Citrus Sinensis ID: 002169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 957 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LET7 | 1022 | Calmodulin-interacting pr | yes | no | 0.916 | 0.858 | 0.609 | 0.0 | |
| Q9DBY8 | 855 | Nuclear valosin-containin | yes | no | 0.550 | 0.616 | 0.410 | 1e-109 | |
| O15381 | 856 | Nuclear valosin-containin | no | no | 0.549 | 0.614 | 0.403 | 1e-108 | |
| O14325 | 779 | Uncharacterized AAA domai | no | no | 0.562 | 0.690 | 0.390 | 1e-106 | |
| Q07844 | 837 | Ribosome biogenesis ATPas | no | no | 0.614 | 0.702 | 0.363 | 1e-103 | |
| Q54SY2 | 867 | Putative ribosome biogene | no | no | 0.538 | 0.594 | 0.362 | 5e-97 | |
| P25694 | 835 | Cell division control pro | no | no | 0.546 | 0.626 | 0.356 | 5e-96 | |
| Q9P3A7 | 815 | Cell division cycle prote | no | no | 0.519 | 0.609 | 0.357 | 1e-95 | |
| Q58556 | 903 | Cell division cycle prote | no | no | 0.287 | 0.304 | 0.568 | 6e-89 | |
| O28972 | 733 | Cell division cycle prote | no | no | 0.305 | 0.398 | 0.538 | 4e-88 |
| >sp|Q9LET7|CI111_ARATH Calmodulin-interacting protein 111 OS=Arabidopsis thaliana GN=CIP111 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/919 (60%), Positives = 672/919 (73%), Gaps = 42/919 (4%)
Query: 26 SQIYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANH 85
+ ++ +V K+ VR+S +L Y +GCP+SGRTVFVY + L+ NG+ + + NH
Sbjct: 141 TTVFSSSKVFKDAVRISLNLCYGLGCPVSGRTVFVYPVSGPSLSDQFNGNGRSRYDDVNH 200
Query: 86 FSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSS 145
S+ C+EL LEL P R+ L+ A E S +Q GNG +S+PKTP + SS
Sbjct: 201 LSLLACKELCLELTPFRNMLQAKNAF--------ESSYEQNGNG-NSTPKTPANLQKFSS 251
Query: 146 QSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCG 205
SP+ EDSV S + + D++EVL +ES+ KLLQ CA+SWLY SLL G
Sbjct: 252 PRPKSPVSPIIEDSVF-SCKQRFSSESSIDLREVLSNESSKKLLQICASSWLYPCSLLYG 310
Query: 206 NLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPL 265
N V+VP+LSEI IF V A+K P+D +N ++AF+IN ETKVYL+ L
Sbjct: 311 NFVSVPILSEICIFCVKRADKRPSDTSNR-------------NHAFMINQETKVYLHHTL 357
Query: 266 NAVSKSLREGTLPNAQI-EFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSL 324
+ S+ + Q E +NV +ISKLGGLSKEYAIL+DII SSS+K++LSSL
Sbjct: 358 DLASEIQGRTFVQGLQFDEGENVGC----EISKLGGLSKEYAILRDIIDSSSIKNSLSSL 413
Query: 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA 384
GLRPTKGVL+HGPPGTGKTSLAR A SGVN F+VNGPE++SQ GESE+AL EVF SA
Sbjct: 414 GLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSA 473
Query: 385 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
S + PAVVFID+LDAIAPARK+GGEELSQRMVATLLNLMDG+ RTDGV+VIAATNRPDSI
Sbjct: 474 SNATPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSI 533
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
EPALRRPGRLDREIEI VPS QR +ILH +L GM HSL + +VE L+MATHGFVGADL+
Sbjct: 534 EPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVGADLS 593
Query: 505 ALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDS 564
ALC EAA VCLRR+ +SS L E +++ SD S + ++S+ C+
Sbjct: 594 ALCCEAAFVCLRRHLDQSSSSSNLP-----LEEAPIAESSSNMSDISSDSSDSASSCI-- 646
Query: 565 ASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKA 624
T TS S L TVS +AD+ N + S M + L + DFE A
Sbjct: 647 ----TISATTSGAQRSFSLDETVSLVADDIQNNGNSCSEQMLRKQGEHTLSVGFEDFENA 702
Query: 625 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGIL 684
+ K+RPSAMREVILEVPKV WEDVGGQ EVK QLMEAVEWPQKHQ+AFKRIGTRPP+GIL
Sbjct: 703 KTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGIL 762
Query: 685 MFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 744
MFGPPGCSKTLMARAVASEA LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF
Sbjct: 763 MFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 822
Query: 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804
FDEID LA+IRGKE+DGVSVSDRVMSQLLVELDGLHQRV VTVIAATNRPDKID ALLRP
Sbjct: 823 FDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRP 882
Query: 805 GRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAI 864
GRFDRLLYVGPPNETDRE I +IHLRKIPCSSD+ ++ELA +++G TGADISLICREAAI
Sbjct: 883 GRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGADISLICREAAI 942
Query: 865 SAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924
+A+EE+L+ I+M+HLK AI ++P+EI SYK LS KFQRLVH++ + +E Q P
Sbjct: 943 AALEESLEMEEISMRHLKAAISQIEPTEILSYKALSEKFQRLVHTDPQREEEVTQ--PGN 1000
Query: 925 SIGSNMWTLIKSISLFLCR 943
++WT ++S+++FL R
Sbjct: 1001 K-SRSLWTPLRSVAMFLRR 1018
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9DBY8|NVL_MOUSE Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/587 (41%), Positives = 331/587 (56%), Gaps = 60/587 (10%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
LG+ P +GVLLHGPPG GKT LA A + + + V PE+VS GESEQ L E+FD
Sbjct: 292 LGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQ 351
Query: 384 ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD---GVCRTDGVLVIAATNR 440
A +AP +VFIDE+DAI P R+ +++ +R+VA LL MD V T VLVI ATNR
Sbjct: 352 AVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNR 411
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA--THGF 498
PDS++PALRR GR DRE+ + +P A R IL L + L + +A T GF
Sbjct: 412 PDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKLR---LPETFNFCHLAHLTPGF 468
Query: 499 VGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESS 558
VGADL ALC EAA+ + R Q + E EG Q+ T +
Sbjct: 469 VGADLMALCREAAMCAVNRVLMKQQAQQKKKP-----EIEGLPSEGDQEERLGAEPTSET 523
Query: 559 RDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLEL 618
+D L LL PL E+ L +EL
Sbjct: 524 QDELQRL--------LGLLRDQDPLS-----------------------EEQMQGLCIEL 552
Query: 619 VDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR 678
DF A +V+PSA RE + VP V W D+G +++ +L+ A+ P ++ + F+ +G
Sbjct: 553 NDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLGLG 612
Query: 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN 738
P GIL+ GPPGC KTL+A+AVA+E+GLNF++VKGPEL + +VGESE+AVR +F +A+ +
Sbjct: 613 TPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 672
Query: 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798
AP +IFFDE+D L R G SV RV++QLL E+DGL R V ++AATNRPD ID
Sbjct: 673 APCVIFFDEVDALCPRRSDRETGASV--RVVNQLLTEMDGLETRQQVFILAATNRPDIID 730
Query: 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLR---KIPCSSDVNIRELAC-LSEGC-TGA 853
PA+LRPGR D+ L+VG P DR I + + K P DVN+ +A L C TGA
Sbjct: 731 PAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGA 790
Query: 854 DISLICREAAISAIEENLDAS---------RITMQHLKTAIRHVQPS 891
D++ + REA++ A+ + + A +++ +H + A + V+PS
Sbjct: 791 DLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPS 837
|
Mus musculus (taxid: 10090) |
| >sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 237/588 (40%), Positives = 329/588 (55%), Gaps = 62/588 (10%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
LG+ P +GVLLHGPPG GKT LA A + + + V PE+VS GESEQ L E+F+
Sbjct: 293 LGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQ 352
Query: 384 ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD---GVCRTDGVLVIAATNR 440
A +AP ++FIDE+DAI P R+ +++ +R+VA LL MD V T VLVI ATNR
Sbjct: 353 AVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNR 412
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA--THGF 498
PDS++PALRR GR DREI + +P A R IL L + L ++ +A T GF
Sbjct: 413 PDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLR---LPQAFDFCHLAHLTPGF 469
Query: 499 VGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESS 558
VGADL ALC EAA+ + R L + +
Sbjct: 470 VGADLMALCREAAMCAVNR---------------VLMKLQEQQ----------------- 497
Query: 559 RDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGC-ALKLE 617
+P DLP+ + SE D + +SE+ L +E
Sbjct: 498 -----KKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIE 552
Query: 618 LVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGT 677
L DF A V+PSA RE + VP V W D+G +++ +L A+ P ++ + FK +G
Sbjct: 553 LNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGL 612
Query: 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARA 737
P G+L+ GPPGC KTL+A+AVA+E+GLNF++VKGPEL + +VGESE+AVR +F +A+
Sbjct: 613 VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKN 672
Query: 738 NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797
+AP +IFFDE+D L R G SV RV++QLL E+DGL R V ++AATNRPD I
Sbjct: 673 SAPCVIFFDEVDALCPRRSDRETGASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDII 730
Query: 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLR---KIPCSSDVNIRELAC-LSEGC-TG 852
DPA+LRPGR D+ L+VG P DR I + + K P +DVN+ +A L C TG
Sbjct: 731 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 790
Query: 853 ADISLICREAAISAIEENLDAS---------RITMQHLKTAIRHVQPS 891
AD+S + REA+I A+ + + +++ +H + A + V+ S
Sbjct: 791 ADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 838
|
Homo sapiens (taxid: 9606) |
| >sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16E9.10c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/607 (39%), Positives = 345/607 (56%), Gaps = 69/607 (11%)
Query: 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA 384
G+ P +GVLLHGPPG GKT LA A++ GV +++ P +VS GESE+ + EVF+ A
Sbjct: 204 GIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEA 263
Query: 385 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RTDG--VLVIAATNR 440
AP ++FIDE+DA+ P R+ E+ +R+VA L MD + +TDG VLVI ATNR
Sbjct: 264 KSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNR 323
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500
PDS++ ALRR GR DREI + VPS R +IL + G++ S D + L+ T G+VG
Sbjct: 324 PDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSG-DFDFRQLAKQTPGYVG 382
Query: 501 ADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRD 560
ADL AL A ++ ++R + + L + + +SD + D S
Sbjct: 383 ADLKALTAAAGIIAIKR---------IFNEISPLNKLDLNSDPRFNELD--------SDM 425
Query: 561 CLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVD 620
LDS + SLPL S I + N D E+ L + D
Sbjct: 426 ALDS-------------NDSLPLDH--SSIIQRYLNAHPDP----LSPEELEPLAICPQD 466
Query: 621 FEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP 680
F +A KV+PS+ RE VP V W ++G + ++ +L A+ P K E ++ +G P
Sbjct: 467 FIEALAKVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAP 526
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAP 740
TG+L++GPPGC KTL+A+AVA+E+ NF++++GPEL +K+VGESE+AVR +F +ARA++P
Sbjct: 527 TGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSP 586
Query: 741 SIIFFDEIDGLAAIRGKESDGVS-VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799
+IFFDE+D + R D +S S RV++ LL ELDGL R V VIAATNRPD IDP
Sbjct: 587 CVIFFDELDAMVPRR---DDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDP 643
Query: 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGC---TGADIS 856
A+LRPGR D+ L V P+ +R EI + ++ P +VN+ L E C +GAD++
Sbjct: 644 AMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLG-RDERCSNFSGADLA 702
Query: 857 LICREAAISAIE-----------------ENLDASRITMQHLKTAIRHVQPSEIHSYKEL 899
+ REAA++A+ L+ R+T + A ++++PS ++
Sbjct: 703 ALVREAAVTALRSAVFADIASNEPEITQHSALEPIRVTNADFELAFKNIKPSVSDRDRQ- 761
Query: 900 SAKFQRL 906
K+QRL
Sbjct: 762 --KYQRL 766
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/663 (36%), Positives = 369/663 (55%), Gaps = 75/663 (11%)
Query: 270 KSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDII-ISSSVKSTLSSLGLRP 328
K +EGT + + + ++ + LGG+ A L ++I + S G+ P
Sbjct: 179 KRSKEGTCKVKRQKIKEDRSPPNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEP 238
Query: 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSA 388
+GVLLHGPPG GKTS+A A + V +++ P VVS GESE+ + ++FD A A
Sbjct: 239 PRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLA 298
Query: 389 PAVVFIDELDAIAPARKDGG--EELSQRMVATLLNLMDGVC--RTDG--VLVIAATNRPD 442
P +VF DE+DAI P R DGG E+ +R+VA LL MD + +T+G V++I ATNRPD
Sbjct: 299 PCLVFFDEIDAITPKR-DGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPD 357
Query: 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA--THGFVG 500
S++ ALRR GR DREI + VP+ RL IL + ++ +D +++ +A T GFVG
Sbjct: 358 SLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLK---IDGAIDFAKLAKLTPGFVG 414
Query: 501 ADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRD 560
ADL AL A ++R QT +++ + T + D M + D + N ESS
Sbjct: 415 ADLKALVTAAGTCAIKRI--FQTYANIKSTPTT--ATDSSEDNM--EIDETANGDESS-- 466
Query: 561 CLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVD 620
L + + LP S+ V + N+ +S E+ L ++ D
Sbjct: 467 -LKNTANMIDPLPLSV----------VQQFIRNYPEPLS--------GEQLSLLSIKYED 507
Query: 621 FEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP 680
F KA ++P+A RE VP V W +VG + V+ +L A+ P K E ++++G P
Sbjct: 508 FLKALPTIQPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAP 567
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAP 740
G+L++GPPGC KTL+A+AVA+E+ NF+++KGPEL +K+VGESE+++R +F +ARA+ P
Sbjct: 568 GGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRARASVP 627
Query: 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 800
+IFFDE+D L R ++ S RV++ LL ELDGL+ R + VI ATNRPD IDPA
Sbjct: 628 CVIFFDELDALVPRR--DTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPA 685
Query: 801 LLRPGRFDRLLYVGPPNETDREEIFRIHLRK--IPCSSDVNIRELACLSEGC---TGADI 855
+LRPGR D+ L++ PN ++ +I + + P SSDV+ E+ +E C +GAD+
Sbjct: 686 MLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEI-IRNEKCNNFSGADL 744
Query: 856 SLICREAAI--------------SAIEENLDASR-------------ITMQHLKTAIRHV 888
+ + RE+++ S ++ +LD +TM ++A+R +
Sbjct: 745 AALVRESSVLALKRKFFQSEEIQSVLDNDLDKEFEDLSVGVSGEEIIVTMSDFRSALRKI 804
Query: 889 QPS 891
+PS
Sbjct: 805 KPS 807
|
Involved in ribosome biogenesis. Seems to be required for restructuring nucleoplasmic 60S pre-ribosomal particles to make them competent for nuclear export. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q54SY2|NVL_DICDI Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 229/632 (36%), Positives = 331/632 (52%), Gaps = 117/632 (18%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
S LG+ P +G+LLHGP G GKT LA+ A + V LF ++ E+ S GESE + +F
Sbjct: 243 SHLGVEPPRGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARVRTLF 302
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--------------- 426
+A AP ++FIDE+DAIAP R+ +++ +R+V+ LL MD +
Sbjct: 303 SNAIAQAPCIIFIDEIDAIAPKRESASKDMERRIVSQLLTCMDSLNYLSSNNSTNEPNEQ 362
Query: 427 -----------------------------------CRTDGVLVIAATNRPDSIEPALRRP 451
+ V+VI ATNRP+S++ ALR
Sbjct: 363 TEQQQQQQQDIIEVDSQATTTTTASNNNNKQQKNDFKKGHVIVIGATNRPESLDTALRIG 422
Query: 452 GRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT--HGFVGADLAALCNE 509
GR D+EI + +P R +IL + S M L++ +Y +AT G+VGAD+ L E
Sbjct: 423 GRFDKEICLGIPDQTARCKILKVITSKMR---LENNFDYEEIATLTPGYVGADINLLVKE 479
Query: 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCT 569
AA + R I TS+ G S + S + NI
Sbjct: 480 AATNSVNR---IFTSN-----------LNGASSSSSSSSSSTTNINNIG----------- 514
Query: 570 SDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVR 629
L T LL S PL EK +L +E++DF+KA KV
Sbjct: 515 --LSTELLISKEPLE-----------------------PEKLNSLYIEMIDFKKALKKVV 549
Query: 630 PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPP 689
P+A RE +P V W+DVG V+ +L ++ P ++ + +K +G P G+LM+GPP
Sbjct: 550 PAAKREGFATIPNVTWDDVGALSGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPP 609
Query: 690 GCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID 749
GC KTL+A+A+ASE NF++VKGPEL +K+VGESE+AVR +F +A A++P +IFFDE D
Sbjct: 610 GCGKTLLAKAIASECQANFISVKGPELLNKYVGESERAVRQVFQRAAASSPCVIFFDEFD 669
Query: 750 GLAAIRGKESDGVS-VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 808
LA RG G + ++RV++QLL E+DGL +R V +IAATNRPD ID A+ RPGR D
Sbjct: 670 ALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLD 729
Query: 809 RLLYVGPPNETDREEIFRIHLRKIPCSSDVNI----RELACLSEGCTGADISLICREAAI 864
+++YV P+ +R EI + KIP DV++ +L C S +GAD+SL+ +EAA
Sbjct: 730 KMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRCHS--FSGADLSLLVKEAAN 787
Query: 865 SAIEENLDAS-----RITMQHLKTAIRHVQPS 891
AI D + +TM+ A+ ++PS
Sbjct: 788 HAISRGFDNNSTEPDTVTMEDFIFALSKIKPS 819
|
Involved in ribosome biogenesis. Dictyostelium discoideum (taxid: 44689) |
| >sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 217/609 (35%), Positives = 320/609 (52%), Gaps = 86/609 (14%)
Query: 274 EGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDII-ISSSVKSTLSSLGLRPTKGV 332
EG N + E N+ DI GG K+ A +++++ + ++G++P +GV
Sbjct: 195 EGEPINREDEENNMNEVGYDDI---GGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGV 251
Query: 333 LLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVV 392
L++GPPGTGKT +AR A+++G F +NGPEV+S+ GESE L + F+ A ++APA++
Sbjct: 252 LMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAII 311
Query: 393 FIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPG 452
FIDE+D+IAP R E+ +R+V+ LL LMDG+ V+VIA A RP
Sbjct: 312 FIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIA----------ATNRPN 361
Query: 453 RLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 512
+D PA R D EV D+ L
Sbjct: 362 SID---------PALR-----------RFGRFDREV-------------DIGIPDATGRL 388
Query: 513 VCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDL 572
LR ++K +D + E G+ + S CS + R+ +D ++
Sbjct: 389 EVLRIHTKNMKLADDVDLEALAAETHGYVGADIA-SLCSEAAMQQIREKMDLIDLDEDEI 447
Query: 573 PTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA 632
+L S + DNF + +S+ PSA
Sbjct: 448 DAEVLDS-------LGVTMDNFRFALGNSN---------------------------PSA 473
Query: 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCS 692
+RE ++E V W+DVGG E+K +L E VE+P H + + + G P G+L +GPPG
Sbjct: 474 LRETVVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTG 533
Query: 693 KTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLA 752
KTL+A+AVA+E NF++VKGPEL S W GESE +R +F KARA AP+++F DE+D +A
Sbjct: 534 KTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIA 593
Query: 753 AIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLL 811
RG D SDRV++QLL E+DG++ + NV VI ATNRPD+IDPA+LRPGR D+L+
Sbjct: 594 KARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLI 653
Query: 812 YVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871
YV P+E R I LRK P + + +A ++G +GAD+ I + AA AI++++
Sbjct: 654 YVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSI 713
Query: 872 DASRITMQH 880
+A R QH
Sbjct: 714 EAHR---QH 719
|
Involved in spindle disassembly, degradation of ubiquitinated proteins and protein export from the endoplasmic reticulum to the cytoplasm. Acts as a chaperone that collects ubiquitinated substrates. Has a role in the endoplasmic reticulum-associated degradation (ERAD) pathway. Required for the proteasome-dependent processing/activation of MGA2 and SPT23 transcription factors leading to the subsequent expression of OLE1. Has an additional role in the turnover of OLE1 where it targets ubiquitinated OLE1 and other proteins to the ERAD. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc48 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 206/576 (35%), Positives = 311/576 (53%), Gaps = 79/576 (13%)
Query: 298 LGGLSKEYAILKDII-ISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356
+GG ++ A +++++ + S+G++P +G+L++GPPGTGKT +AR A+++G
Sbjct: 226 IGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAF 285
Query: 357 LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMV 416
F +NGPE++S+ GESE L + F+ A +++PA++FIDE+D+IAP R+ E+ +R+V
Sbjct: 286 FFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVV 345
Query: 417 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476
+ LL LMDG+ V+V+A A RP +D PA R
Sbjct: 346 SQLLTLMDGMKARSNVVVMA----------ATNRPNSID---------PALR-------- 378
Query: 477 SGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFE 536
D EV D+ L LR ++K +D + E
Sbjct: 379 ---RFGRFDREV-------------DVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAE 422
Query: 537 FEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHN 596
G+ + L S CS + R+ +D ++ +L S + DNF
Sbjct: 423 THGYVGSDLA-SLCSEAAMQQIREKMDMIDLDEDEIDAEVLDS-------LGVTMDNFRF 474
Query: 597 GVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKT 656
+ S+ PSA+RE ++EVP V+WED+GG EVK
Sbjct: 475 ALGSSN---------------------------PSALRETVVEVPNVRWEDIGGLEEVKR 507
Query: 657 QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716
+L E V+ P + E F R G P G+L FGPPG KTL+A+A+A+E NF++VKGPEL
Sbjct: 508 ELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPEL 567
Query: 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776
S W GESE VR +F KARA AP ++F DE+D +A RG + DRV++QLL E+
Sbjct: 568 LSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEM 627
Query: 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS 836
DG++ + NV VI ATNRPD+IDPAL+RPGR D+L+YV P+E R I + LR P +
Sbjct: 628 DGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAE 687
Query: 837 DVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
DV++R +A + G +GAD+ + + A AI+++++
Sbjct: 688 DVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIE 723
|
Involved in spindle disassembly, degradation of ubiquitinated proteins and protein export from the endoplasmic reticulum to the cytoplasm. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 157/276 (56%), Positives = 208/276 (75%), Gaps = 1/276 (0%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
LK+ + DF++A V PSAMREV++EVP VKWED+GG EVK +L EAVEWP K +E F+
Sbjct: 420 LKVTMDDFKEALKDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFE 479
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
+IG RPP G+L+FGPPG KTL+A+AVA+E+G NF++VKGPE+FSKWVGESEKA+R +F
Sbjct: 480 KIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFR 539
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KAR +AP IIFFDEID +A RG++ +V+D+V++QLL ELDG+ + +V VIAATNR
Sbjct: 540 KARQSAPCIIFFDEIDAIAPKRGRDLSS-AVTDKVVNQLLTELDGMEEPKDVVVIAATNR 598
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD IDPALLRPGR DR++ V P+E R +IF+IH R + + DVN+ ELA +EG TGA
Sbjct: 599 PDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGA 658
Query: 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889
DI +CREAA+ A+ E++ L+ I ++Q
Sbjct: 659 DIEALCREAAMLAVRESIGKPWDIEVKLRELINYLQ 694
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 167/310 (53%), Positives = 215/310 (69%), Gaps = 18/310 (5%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
LK+ DF +A + PSAMREV++EVP VKWED+GG K +LMEAVEWP K+ E F+
Sbjct: 423 LKVTREDFMEALKNIEPSAMREVLVEVPNVKWEDIGGLEHAKQELMEAVEWPLKYPEVFR 482
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
+PP GIL+FGPPG KTL+A+AVA+E+ NF++VKGPEL SKWVGESEK VR +F
Sbjct: 483 AANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFR 542
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KAR AP +IFFDEID LA RG D V++RV+SQLL ELDGL + +V VIAATNR
Sbjct: 543 KARQVAPCVIFFDEIDSLAPRRGGIGDS-HVTERVVSQLLTELDGLEELKDVVVIAATNR 601
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD IDPALLRPGR +R +Y+ PP++ R EIF+IHLR P + DVNI ELA +EG +GA
Sbjct: 602 PDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGA 661
Query: 854 DISLICREAAISAI----------EENLDAS---RITMQHLKTAIRHVQPS----EIHSY 896
DI +CREA + AI EE +A+ +IT +H + A++ V+PS ++ Y
Sbjct: 662 DIEAVCREAGMLAIRELIKPGMTREEAKEAAKKLKITKKHFEEALKKVRPSLTKEDVEKY 721
Query: 897 KELSAKFQRL 906
++L F R+
Sbjct: 722 EKLIEDFHRM 731
|
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 957 | ||||||
| 224089933 | 1042 | predicted protein [Populus trichocarpa] | 0.916 | 0.841 | 0.687 | 0.0 | |
| 359481434 | 1030 | PREDICTED: cell division cycle protein 4 | 0.928 | 0.863 | 0.655 | 0.0 | |
| 255552465 | 1094 | calmodulin-binding protein, putative [Ri | 0.894 | 0.782 | 0.664 | 0.0 | |
| 356503365 | 1036 | PREDICTED: cell division cycle protein 4 | 0.916 | 0.846 | 0.602 | 0.0 | |
| 6760428 | 1022 | calmodulin-binding protein [Arabidopsis | 0.916 | 0.858 | 0.607 | 0.0 | |
| 297820436 | 1025 | CIP111 [Arabidopsis lyrata subsp. lyrata | 0.914 | 0.853 | 0.608 | 0.0 | |
| 15228991 | 1022 | Cam interacting protein 111 [Arabidopsis | 0.916 | 0.858 | 0.609 | 0.0 | |
| 449517549 | 1027 | PREDICTED: calmodulin-interacting protei | 0.924 | 0.861 | 0.586 | 0.0 | |
| 449438683 | 1026 | PREDICTED: calmodulin-interacting protei | 0.923 | 0.861 | 0.585 | 0.0 | |
| 357509263 | 1046 | AAA family ATPase CDC48 subfamily [Medic | 0.869 | 0.795 | 0.550 | 0.0 |
| >gi|224089933|ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|222854846|gb|EEE92393.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1228 bits (3177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/894 (68%), Positives = 714/894 (79%), Gaps = 17/894 (1%)
Query: 28 IYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANHFS 87
++P +V KN RLSS+L+Y MGCP SG+ VFV+TI+++ LT +VNG++ P A+ S
Sbjct: 152 VFPSCKVSKNGARLSSNLAYMMGCPASGKVVFVHTIRNKLLTDIVNGNDTPEGANADDLS 211
Query: 88 VCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSSQS 147
+ C EL+LELVP R+KM S MK+SAE+ D+ NG+ SSPKTP+ QP+LSS S
Sbjct: 212 LHNCNELYLELVPFMDRVKMKSDTMSAMKLSAEKRHDRSENGMISSPKTPLCQPKLSSPS 271
Query: 148 VNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNL 207
L SP+ E++ S N N +V +IKEVLEDESA KLLQ CA SWLYSR L+CGNL
Sbjct: 272 PIHLTSPICEEAASNISNSNGTDVGLLNIKEVLEDESAKKLLQVCATSWLYSRVLICGNL 331
Query: 208 VAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNA 267
VA+P+LS + IF V ANKLPAD + H +AF IN ETKVYL+ +N+
Sbjct: 332 VAIPVLSNLCIFRVKSANKLPAD------------ELSHMKDAFSINRETKVYLHQHMNS 379
Query: 268 VSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLR 327
++ ++ LP Q E N + + + SKLGGL KEY +LKDII+SS+ K+TLS GLR
Sbjct: 380 TAERPQKQGLPLMQSECINGKTIIGNERSKLGGLHKEYTVLKDIIVSST-KNTLSCFGLR 438
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
TKGVLLHGPPGTGKTSLARLC D+GVNLF+VNGPE+ SQ YGESEQA+H+VFDSA QS
Sbjct: 439 TTKGVLLHGPPGTGKTSLARLCVIDAGVNLFSVNGPEIFSQYYGESEQAMHKVFDSACQS 498
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447
APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG+ RTDG+LVIAATNRPDSIEPA
Sbjct: 499 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGIARTDGLLVIAATNRPDSIEPA 558
Query: 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 507
LRRPGRLDREIEI VPSP+QRL+ILH LLS MEHS+ D +++ L+MATHGFVGADLAALC
Sbjct: 559 LRRPGRLDREIEIGVPSPSQRLDILHTLLSEMEHSVSDMQLKQLAMATHGFVGADLAALC 618
Query: 508 NEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASP 567
NEAALVCL+R+++ + S S G+ +EGHSD+M++ SDCS + RD DSAS
Sbjct: 619 NEAALVCLKRHARSKKSDYSSRSKGSSIAYEGHSDSMVKGSDCSTGARDMLRDGADSASS 678
Query: 568 CTSDLPTSL--LSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKAR 625
TS LP SL LSSS G VSEI DN G+ F+ E+ L + DFE AR
Sbjct: 679 STSHLPVSLENLSSSCS-DGDVSEITDNTEKGIIACPREEFLVEEEALLNIVSEDFEMAR 737
Query: 626 MKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILM 685
MKVRPSAMREVILEVPKV WEDVGGQ E+KTQLMEAV WPQ HQ+AFKRIGTRPPTGILM
Sbjct: 738 MKVRPSAMREVILEVPKVNWEDVGGQGEIKTQLMEAVLWPQTHQDAFKRIGTRPPTGILM 797
Query: 686 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 745
FGPPGCSKTLMARAVAS+AGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF
Sbjct: 798 FGPPGCSKTLMARAVASKAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 857
Query: 746 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 805
DEIDGLA IRGKESDGVSVSDRVMSQLL+ELDGL QRVNVTVIAATNRPDKIDPALLRPG
Sbjct: 858 DEIDGLAVIRGKESDGVSVSDRVMSQLLIELDGLQQRVNVTVIAATNRPDKIDPALLRPG 917
Query: 806 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 865
RFDRLLYVGPPN+ DRE+IFRIHL K+PCSSDVNI+ELACL++GCTGADI+LICREAA++
Sbjct: 918 RFDRLLYVGPPNQNDREDIFRIHLHKVPCSSDVNIKELACLTDGCTGADIALICREAAVA 977
Query: 866 AIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQ 919
AIEEN+DAS + MQHLKTAI+ VQP+EI+SY++LSAKFQRLVHS ++ DE G Q
Sbjct: 978 AIEENIDASEVPMQHLKTAIQQVQPTEINSYQDLSAKFQRLVHS-SDKDELGNQ 1030
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481434|ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 homolog AF_1297-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/935 (65%), Positives = 715/935 (76%), Gaps = 46/935 (4%)
Query: 10 FFVQAGNS---DLSYHRDCSQIYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQ 66
F V +GN + + + ++P +VLKN VRLS +L +TMG P S R VFVY IQSQ
Sbjct: 125 FQVDSGNKMPGEAGNYFALATVFPSCKVLKNGVRLSLNLYHTMGSPASARIVFVYLIQSQ 184
Query: 67 FLTGLVNGSNKPYNGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQL 126
+TG VNGS K ++ N S+ C+EL+LE++P ++ +N S ++VS E + Q+
Sbjct: 185 SVTGFVNGSRKSHSTTINGLSLYKCKELYLEMIPSKNGSTVNSDMQSTVQVSTETTNYQV 244
Query: 127 GNGIDSSPKTPM-YQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESA 185
NG SSPKTP+ YQ +L S + NQL SP+ +DSVS N N+ +FDI EVL DE+A
Sbjct: 245 SNGAASSPKTPVSYQSKLISPNSNQLTSPICDDSVSSLSNPNNKIFASFDITEVLGDETA 304
Query: 186 IKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPAD-----LTNERSQ--- 237
KLLQ+CAASWLYSRSLL GNLV +P+LSE+ F V GA KL D LT+ERS
Sbjct: 305 KKLLQSCAASWLYSRSLLTGNLVTIPILSELCTFCVRGAIKLSPDSDNHDLTDERSHGLF 364
Query: 238 PQVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISK 297
+ +S+ H +A V++ ETKVYLY P N+ S++ ++G P+ ++EF+N +A V + K
Sbjct: 365 SRAPDSVSHVDDACVVDRETKVYLYLPSNSSSETPQKGRPPHVELEFKNFKANVGSAV-K 423
Query: 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL 357
LGGLS+EYA+LKDIIIS+SVK+TLSS+GLR TKGVLLHGPPGTGKTSLA+LC D+GVNL
Sbjct: 424 LGGLSEEYAVLKDIIISTSVKNTLSSMGLRTTKGVLLHGPPGTGKTSLAQLCICDAGVNL 483
Query: 358 FTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA 417
F+VNG E+VSQ YGESEQALHE+FDSASQ+APAVVFIDELDAIAPARKDGGEELS R+VA
Sbjct: 484 FSVNGAEIVSQYYGESEQALHEIFDSASQAAPAVVFIDELDAIAPARKDGGEELSHRIVA 543
Query: 418 TLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS 477
TLLNLMDG+ RTDG+LVIAATNRPDSIEPALRRPGRLDRE+EI VPSP QR +IL LLS
Sbjct: 544 TLLNLMDGISRTDGILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLS 603
Query: 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEF 537
ME+SL D +++ L+ THGFVGADLAALCNEAALVCLRRY K + S D H T
Sbjct: 604 EMENSLSDMQIQQLATVTHGFVGADLAALCNEAALVCLRRYVKFKKSCDDFHCNRTSIVH 663
Query: 538 EGHSDTMLQDSDCSRNITES-SRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHN 596
+G + D D S + + SRD D AS DL S
Sbjct: 664 DGK----IADPDDSEALEDQFSRDHPDCASSSPPDLSVSR-------------------- 699
Query: 597 GVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKT 656
F+ E+ C L + DFEKARMK+RPSAMREVILEVP+VKWEDVGGQ EVK
Sbjct: 700 --------SFIMEEECMLVVTFEDFEKARMKIRPSAMREVILEVPRVKWEDVGGQNEVKA 751
Query: 657 QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716
QLMEAVEWPQKHQ+AFKRIGTRPPTG+L+FGPPGCSKTLMARAVASEAGLNFLAVKGPEL
Sbjct: 752 QLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 811
Query: 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776
FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLA IRGKESDGVSV+DRVMSQLLVEL
Sbjct: 812 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVADRVMSQLLVEL 871
Query: 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS 836
DGLHQRV+VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE+DR +IF IHL KIP SS
Sbjct: 872 DGLHQRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSS 931
Query: 837 DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSY 896
DV+I ELA L+EG TGADISLICREAAI+AIE+NLDAS ITM+HLKTAIR VQPSE+ SY
Sbjct: 932 DVSIGELAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSY 991
Query: 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMW 931
+ELS KFQRLVHS+ + DESG LR SKS +W
Sbjct: 992 QELSTKFQRLVHSSDKRDESGLPLRSSKSTWMPLW 1026
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis] gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/895 (66%), Positives = 694/895 (77%), Gaps = 39/895 (4%)
Query: 28 IYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANHFS 87
++P + LK+ VR SSSLSYTMGCP SGR VFVY +Q+Q L+GLVNG +KP + + + S
Sbjct: 145 VFPSCKALKDGVRFSSSLSYTMGCPASGRLVFVYPVQNQLLSGLVNGDSKPNDKKIDSLS 204
Query: 88 VCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSSQS 147
ELHLELVP++ R+K + SKM SAE++ Q NG +SSP+TP+ QP+LSS S
Sbjct: 205 SHNFYELHLELVPVKDRVKRSSDVISKMN-SAEKTHGQSENGKNSSPRTPLCQPKLSSSS 263
Query: 148 VNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNL 207
+ AS E+++S N +VD+FDIKEVL+DES +LLQ C SWLYSR L+CGN+
Sbjct: 264 PSLSASSRCEEAMSNLSNRRQTHVDSFDIKEVLKDESVKQLLQACVVSWLYSRILICGNI 323
Query: 208 VAVPMLSEISIFLVIGANK-----LPADLTNERSQ---PQVTESMDHESNAFVINHETKV 259
VA+P+LSE+ IF V+ AN+ DL ERS PQ +ESMDH INHETKV
Sbjct: 324 VAIPILSELCIFRVVSANQSLEDNQNQDLIKERSNSVCPQSSESMDHLKETISINHETKV 383
Query: 260 YLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKS 319
YL+ P+N+ K+ +L QIE +V++ + +I+KLGGL KEYA+LKDII+S+ +K+
Sbjct: 384 YLHLPMNSACKTPYRSSLSFTQIENVHVKSVMAHEITKLGGLHKEYAVLKDIILST-MKN 442
Query: 320 TLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHE 379
SLGLRPTKGVLLHGP GTGKTSLARLCA D+GVNL +VNGPE++SQ +GESEQALHE
Sbjct: 443 DFLSLGLRPTKGVLLHGPTGTGKTSLARLCALDAGVNLLSVNGPEIISQYHGESEQALHE 502
Query: 380 VFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
VF SAS+ APAVVFIDELD+IAPARKDGGE LSQRMVATLLNLMDGV RTDGV++IAATN
Sbjct: 503 VFASASRGAPAVVFIDELDSIAPARKDGGEALSQRMVATLLNLMDGVSRTDGVIIIAATN 562
Query: 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499
RPDSIEPALRRPGRLDREIEI VPSP QRL+IL+ LLS EHSL D +V++L++ATHGFV
Sbjct: 563 RPDSIEPALRRPGRLDREIEIGVPSPKQRLDILNTLLSQREHSLSDLQVQHLAVATHGFV 622
Query: 500 GADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSR 559
GADLAALCNEAAL+CLRRY K + S++ LHS G+ E + + ML S S
Sbjct: 623 GADLAALCNEAALICLRRYVKSRKSNNYLHSMGSPTVGESYHEIMLNGS---------SE 673
Query: 560 DCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELV 619
C DS S + +A + N +S S + E LK+
Sbjct: 674 TCEDSVS------------------SNLQSLAASSENSLSTSEAILVAEES--ILKVVFE 713
Query: 620 DFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP 679
DFEKARMKVRPSAMREVILEVPKV WEDVGGQ+EVK QLMEAVEWPQKHQ+AF+RIGTRP
Sbjct: 714 DFEKARMKVRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHQDAFQRIGTRP 773
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA 739
PTG+LMFGPPGCSKTLMARAVASEAGLNF AVKGPELFSKWVGESEKAVRSLFAKARANA
Sbjct: 774 PTGVLMFGPPGCSKTLMARAVASEAGLNFFAVKGPELFSKWVGESEKAVRSLFAKARANA 833
Query: 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799
PSIIFFDEIDGLA IRGKE+DGVSVSDRVM+QLLVELDGLHQRVNVTVIAATNRPDKIDP
Sbjct: 834 PSIIFFDEIDGLAVIRGKENDGVSVSDRVMTQLLVELDGLHQRVNVTVIAATNRPDKIDP 893
Query: 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLIC 859
ALLRPGRFDRLLYVGPPN TDRE IFRIHLRKIPCSSDV+I+EL+ L+EGCTGADIS IC
Sbjct: 894 ALLRPGRFDRLLYVGPPNATDREAIFRIHLRKIPCSSDVSIKELSHLTEGCTGADISFIC 953
Query: 860 REAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEAD 914
REAA++AIEE +DAS +TM+H +TAIR +P SY ELSAKFQRLVHSN D
Sbjct: 954 REAAMAAIEECIDASEVTMKHTRTAIRQAKPLNTESYNELSAKFQRLVHSNHRQD 1008
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503365|ref|XP_003520480.1| PREDICTED: cell division cycle protein 48 homolog AF_1297-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/925 (60%), Positives = 669/925 (72%), Gaps = 48/925 (5%)
Query: 28 IYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANHFS 87
++P +VLKN VRLSS+L Y MGCP G +VFV+ IQ L NGSN+ ++ E N
Sbjct: 147 VFPSSKVLKNGVRLSSNLYYAMGCPPLGTSVFVHPIQK----SLANGSNEQHSTENNCLP 202
Query: 88 VCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSSQS 147
+ C+EL+L+LVP ++ L + F +S +S Q N I +SP TP + S+
Sbjct: 203 IYNCKELYLQLVPSKNGLPLKFNNFPSSGMSKVKSHVQSENDIIASPATPSNGSKFSN-- 260
Query: 148 VNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNL 207
++SP+ +DS S N NS ++++FD+ L DES+ ++L T A WLYSRSLL GNL
Sbjct: 261 AIGMSSPLFDDSASSVPNLNSQSLNSFDVSLALRDESSKEILLTGAKPWLYSRSLLLGNL 320
Query: 208 VAVPMLSEISIFLVIGANKLPADLT-------NERSQPQVTESMDHESNAFVINHETKVY 260
V VPMLSE+ F VIGA K P + N P+ ++ + + AF +N ETKV+
Sbjct: 321 VNVPMLSELCFFQVIGAKKQPVTKSDHCPSNGNSDLYPEDSDIAESVNQAFTVNDETKVF 380
Query: 261 LYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKST 320
L P NA S+ + +P ++E + A++ ISKLGGLSKEY +LKDII SS +
Sbjct: 381 LSLPSNAASEEPIQRDIPCVKLEHKVANASLHDKISKLGGLSKEYTLLKDIISSSVSDAL 440
Query: 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEV 380
SS GLR T+GVLLHGPPGTGKTSLA+LCAHD GV F +NGPE+V+Q YGESEQ LHE+
Sbjct: 441 -SSFGLRTTRGVLLHGPPGTGKTSLAQLCAHDVGVKFFPINGPEIVTQYYGESEQQLHEL 499
Query: 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440
FDSA Q+APAVVFIDELDAIAPARKDGGEELSQR+VATLLNL+DG+ R++G+LVIAATNR
Sbjct: 500 FDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLVDGISRSEGLLVIAATNR 559
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500
PD IEPALRRPGR D+EIEI VPSP QR +IL LLS M+HSL + ++E L+ THGFVG
Sbjct: 560 PDHIEPALRRPGRFDKEIEIGVPSPNQRSDILLTLLSEMDHSLAELQIENLATVTHGFVG 619
Query: 501 ADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITES--- 557
ADLAALCNEAAL+CLRRY+ + + D CS ITE
Sbjct: 620 ADLAALCNEAALICLRRYANFKKTYD----------------------SCSDYITEQPAL 657
Query: 558 ---SRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCAL 614
+ + +D + TS + ++SS L + + + DS E+ L
Sbjct: 658 MNGATNSIDHSGDATSSVSDMSVASSRVLPSCMIGMTSEAMEIIPDSG------EEEQIL 711
Query: 615 KLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKR 674
K+ DF+KARMK+RPSAMREVILEVPKV WEDVGGQ+EVK QLMEAVEWPQKH +AF R
Sbjct: 712 KVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFNR 771
Query: 675 IGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAK 734
IGTRPPTG+LMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAK
Sbjct: 772 IGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAK 831
Query: 735 ARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794
ARANAPSI+FFDEID LA RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP
Sbjct: 832 ARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 891
Query: 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGAD 854
DKIDPALLRPGRFDRLLYVGPPNE DREEIFRIHLRKIPC SDV+++ELA L++GCTGAD
Sbjct: 892 DKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLKELARLTDGCTGAD 951
Query: 855 ISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEAD 914
ISLICREAA++AIEE+LDAS ITM+HLK AI+ +QPSE+HSY++LS KFQR V D
Sbjct: 952 ISLICREAAVAAIEESLDASVITMEHLKMAIKQIQPSEVHSYQKLSTKFQRAVRCCDIKD 1011
Query: 915 ESGYQLRPSKSIGSNMWTLIKSISL 939
E S+S ++W IKS +L
Sbjct: 1012 EFNDMPCDSRSTQFSIWKFIKSYTL 1036
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6760428|gb|AAF28347.1| calmodulin-binding protein [Arabidopsis thaliana] gi|6760430|gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/919 (60%), Positives = 668/919 (72%), Gaps = 42/919 (4%)
Query: 26 SQIYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANH 85
+ ++ +V K+ VR+S +L Y +GCP+SGRTVFVY + L+ NG+ + + NH
Sbjct: 141 TTVFSSSKVFKDAVRISLNLCYGLGCPVSGRTVFVYPVSGPSLSDQFNGNGRSRYDDVNH 200
Query: 86 FSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSS 145
S+ C+EL LEL P R+ L+ A E S +Q GNG +S+PKTP + SS
Sbjct: 201 LSLLACKELCLELTPFRNMLQAKNAF--------ESSYEQNGNG-NSTPKTPANLQKFSS 251
Query: 146 QSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCG 205
SP+ EDSV S + + D++EVL +ES+ KLLQ CA+SWLY SLL G
Sbjct: 252 PRPKSPVSPIIEDSVF-SCKQRFSSESSIDLREVLSNESSKKLLQICASSWLYPCSLLYG 310
Query: 206 NLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPL 265
N V+VP+LSEI IF V A+K P+D +N ++AF+IN ETKVYL+ L
Sbjct: 311 NFVSVPILSEICIFCVKRADKRPSDTSNR-------------NHAFMINQETKVYLHHTL 357
Query: 266 NAVSKSLREGTLPNAQI-EFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSL 324
+ S+ + Q E +NV +ISKLGGLSKEYAIL+DII SSS+K++LS L
Sbjct: 358 DLASEIQGRTFVQGLQFDEGENVGC----EISKLGGLSKEYAILRDIIDSSSIKNSLSGL 413
Query: 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA 384
GLRPTKGVL+HGPPGTGKTSLAR A SGVN F+VNGPE++SQ GESE+AL EVF SA
Sbjct: 414 GLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSA 473
Query: 385 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
S + PA VFID+LDAIAPARK+GGEELSQRMVATLLNLMDG+ RTDGV+VIAATNRPDSI
Sbjct: 474 SNATPAAVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSI 533
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
EPALRRPGRLDREIEI PS QR +ILH +L GM HSL + +VE L+MATHGFVGADL+
Sbjct: 534 EPALRRPGRLDREIEIGAPSSTQRSDILHVILCGMRHSLSNIQVEQLAMATHGFVGADLS 593
Query: 505 ALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDS 564
ALC EAA VCLRR+ SS L E +++ SD S + ++S+ C+
Sbjct: 594 ALCCEAAFVCLRRHLDQSYSSSNLP-----LEEAPIAESSSSMSDISSDSSDSASSCI-- 646
Query: 565 ASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKA 624
T TS S L TVS +AD+ N + S M + L + DFE A
Sbjct: 647 ----TISATTSGAQRSFSLDETVSLVADDNQNNGNSCSEQMLRKQGEHTLSVGFEDFENA 702
Query: 625 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGIL 684
+ K+RPSAMREVILEVPKV WEDVGGQ EVK QLMEAVEWPQKHQ+AFKRIGTRPP+GIL
Sbjct: 703 KTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGIL 762
Query: 685 MFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 744
MFGPPGCSKTLMARAVASEA LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF
Sbjct: 763 MFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 822
Query: 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804
FDEID LA+IRGKE+DGVSVSDRVMSQLLVELDGLHQRV VTVIAATNRPDKID ALLRP
Sbjct: 823 FDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRP 882
Query: 805 GRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAI 864
GRFDRLLYVGPPNETDRE I +IHLRKIPCSSD+ ++ELA +++G TGADISLICREAAI
Sbjct: 883 GRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGADISLICREAAI 942
Query: 865 SAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924
+A+EE+L+ I+M+HLK AI ++P+EI SYK LS KFQRLVH++ + +E Q P
Sbjct: 943 AALEESLEMEEISMRHLKAAISQIEPTEILSYKALSEKFQRLVHTDPQREEEVTQ--PGN 1000
Query: 925 SIGSNMWTLIKSISLFLCR 943
++WT +KS+++FL R
Sbjct: 1001 K-SRSLWTPLKSVAMFLRR 1018
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820436|ref|XP_002878101.1| CIP111 [Arabidopsis lyrata subsp. lyrata] gi|297323939|gb|EFH54360.1| CIP111 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/920 (60%), Positives = 679/920 (73%), Gaps = 45/920 (4%)
Query: 28 IYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANHFS 87
++ +VLK+ VR+S +L Y +GCP+SGRTVFVY + L+ +G+ + + NH S
Sbjct: 143 VFSSSKVLKDAVRISLNLCYGLGCPVSGRTVFVYPVSGPSLSDQFHGNGGSLSDDVNHLS 202
Query: 88 VCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSSQS 147
+ C+EL LEL P R+ L+ K E S +Q GNG +S+PKTP + SS
Sbjct: 203 LLACKELCLELTPFRNMLQA--------KNGFESSHEQNGNG-NSTPKTPSNLQKFSSPR 253
Query: 148 VNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNL 207
ASP+ +DSV S S + + D++EVL +ES+ KLLQ CA+SWLY SLL GN
Sbjct: 254 PESPASPILQDSVFSSKQRFS-SESSIDLREVLSNESSKKLLQICASSWLYPCSLLYGNF 312
Query: 208 VAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNA 267
VAVP+LSEI IF V A+K +D T++R+Q AF+IN ETKVYL+ L+
Sbjct: 313 VAVPILSEICIFCVKRADKRQSD-TSKRNQ------------AFIINQETKVYLHHTLDL 359
Query: 268 VSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLR 327
S+ ++ Q + + V +ISKLGGLSKEYAIL+DI++SSS K++LSSLGLR
Sbjct: 360 ASEIRERKSVQGLQFDEDDEGENVGCEISKLGGLSKEYAILRDIVVSSSTKNSLSSLGLR 419
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
PTKGVL++GPPGTGKTSLAR A DSGVN F+VNGPE++SQ GESE+AL EVF SAS +
Sbjct: 420 PTKGVLIYGPPGTGKTSLARSFARDSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 479
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447
PAVVFID+LDAIAPARK+GGEELSQRMVATLLNLMDG+ R+DGV+VIAATNRPDSIEPA
Sbjct: 480 TPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRSDGVVVIAATNRPDSIEPA 539
Query: 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 507
LRRPGRLDREIEI VPS AQR +IL +L GM HSL D ++E L+MATHGFVGADL+ALC
Sbjct: 540 LRRPGRLDREIEIGVPSSAQRSDILRVILHGMRHSLSDIQIEQLAMATHGFVGADLSALC 599
Query: 508 NEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDS---DCSRNITESSRDCLDS 564
EAA VCLRR+ +SS S+ L+++ + S N+++ S D DS
Sbjct: 600 CEAAFVCLRRHLDQSSSS---------------SNLPLEEAPIAESSTNMSDISSDSSDS 644
Query: 565 ASPCTSDLPT-SLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEK 623
AS C + PT S + L GTVS +AD+ + + S + E L + DFE
Sbjct: 645 ASSCITVSPTTSGAQRTFSLNGTVSRVADDIQSSSNSCSEQILRKEDERTLSVGFEDFEN 704
Query: 624 ARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGI 683
A+ K+RPSAMREVILEVPKV WEDVGGQ EVK QLMEAVEWPQKHQ+AFKRIGTRPP+GI
Sbjct: 705 AKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGI 764
Query: 684 LMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSII 743
LMFGPPGCSKTLMARAVASEA LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSII
Sbjct: 765 LMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSII 824
Query: 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLR 803
FFDEID LA+IRGKE+DGVSVSDRVMSQLLVELDGLHQRV VTVIAATNRPDKID ALLR
Sbjct: 825 FFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLR 884
Query: 804 PGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAA 863
PGRFDRLLYVGPP+E DRE I +IHLRKIPCSSD+ ++E A +++G TGADISLICREAA
Sbjct: 885 PGRFDRLLYVGPPDEADREAILKIHLRKIPCSSDICLKEFASITKGYTGADISLICREAA 944
Query: 864 ISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPS 923
I+A+EE+L+ I+M+HLK AI ++P+EI SYK LS KFQRLVH++ + +E Q P
Sbjct: 945 IAALEESLEMEEISMRHLKAAISQIEPTEIQSYKALSEKFQRLVHTDPQREEEVTQ--PG 1002
Query: 924 KSIGSNMWTLIKSISLFLCR 943
+WT +KS+++FL R
Sbjct: 1003 NK-SRTLWTPLKSVAMFLRR 1021
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228991|ref|NP_191228.1| Cam interacting protein 111 [Arabidopsis thaliana] gi|75334903|sp|Q9LET7.1|CI111_ARATH RecName: Full=Calmodulin-interacting protein 111; Short=CaM-interacting protein 111; AltName: Full=ATPase family AAA domain-containing protein CIP111 gi|9662988|emb|CAC00732.1| calmodulin-binding protein [Arabidopsis thaliana] gi|332646031|gb|AEE79552.1| Cam interacting protein 111 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/919 (60%), Positives = 672/919 (73%), Gaps = 42/919 (4%)
Query: 26 SQIYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANH 85
+ ++ +V K+ VR+S +L Y +GCP+SGRTVFVY + L+ NG+ + + NH
Sbjct: 141 TTVFSSSKVFKDAVRISLNLCYGLGCPVSGRTVFVYPVSGPSLSDQFNGNGRSRYDDVNH 200
Query: 86 FSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSS 145
S+ C+EL LEL P R+ L+ A E S +Q GNG +S+PKTP + SS
Sbjct: 201 LSLLACKELCLELTPFRNMLQAKNAF--------ESSYEQNGNG-NSTPKTPANLQKFSS 251
Query: 146 QSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCG 205
SP+ EDSV S + + D++EVL +ES+ KLLQ CA+SWLY SLL G
Sbjct: 252 PRPKSPVSPIIEDSVF-SCKQRFSSESSIDLREVLSNESSKKLLQICASSWLYPCSLLYG 310
Query: 206 NLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPL 265
N V+VP+LSEI IF V A+K P+D +N ++AF+IN ETKVYL+ L
Sbjct: 311 NFVSVPILSEICIFCVKRADKRPSDTSNR-------------NHAFMINQETKVYLHHTL 357
Query: 266 NAVSKSLREGTLPNAQI-EFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSL 324
+ S+ + Q E +NV +ISKLGGLSKEYAIL+DII SSS+K++LSSL
Sbjct: 358 DLASEIQGRTFVQGLQFDEGENVGC----EISKLGGLSKEYAILRDIIDSSSIKNSLSSL 413
Query: 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA 384
GLRPTKGVL+HGPPGTGKTSLAR A SGVN F+VNGPE++SQ GESE+AL EVF SA
Sbjct: 414 GLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSA 473
Query: 385 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
S + PAVVFID+LDAIAPARK+GGEELSQRMVATLLNLMDG+ RTDGV+VIAATNRPDSI
Sbjct: 474 SNATPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSI 533
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
EPALRRPGRLDREIEI VPS QR +ILH +L GM HSL + +VE L+MATHGFVGADL+
Sbjct: 534 EPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVGADLS 593
Query: 505 ALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDS 564
ALC EAA VCLRR+ +SS L E +++ SD S + ++S+ C+
Sbjct: 594 ALCCEAAFVCLRRHLDQSSSSSNLP-----LEEAPIAESSSNMSDISSDSSDSASSCI-- 646
Query: 565 ASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKA 624
T TS S L TVS +AD+ N + S M + L + DFE A
Sbjct: 647 ----TISATTSGAQRSFSLDETVSLVADDIQNNGNSCSEQMLRKQGEHTLSVGFEDFENA 702
Query: 625 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGIL 684
+ K+RPSAMREVILEVPKV WEDVGGQ EVK QLMEAVEWPQKHQ+AFKRIGTRPP+GIL
Sbjct: 703 KTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGIL 762
Query: 685 MFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 744
MFGPPGCSKTLMARAVASEA LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF
Sbjct: 763 MFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 822
Query: 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804
FDEID LA+IRGKE+DGVSVSDRVMSQLLVELDGLHQRV VTVIAATNRPDKID ALLRP
Sbjct: 823 FDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRP 882
Query: 805 GRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAI 864
GRFDRLLYVGPPNETDRE I +IHLRKIPCSSD+ ++ELA +++G TGADISLICREAAI
Sbjct: 883 GRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGADISLICREAAI 942
Query: 865 SAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924
+A+EE+L+ I+M+HLK AI ++P+EI SYK LS KFQRLVH++ + +E Q P
Sbjct: 943 AALEESLEMEEISMRHLKAAISQIEPTEILSYKALSEKFQRLVHTDPQREEEVTQ--PGN 1000
Query: 925 SIGSNMWTLIKSISLFLCR 943
++WT ++S+++FL R
Sbjct: 1001 K-SRSLWTPLRSVAMFLRR 1018
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517549|ref|XP_004165808.1| PREDICTED: calmodulin-interacting protein 111-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/951 (58%), Positives = 683/951 (71%), Gaps = 66/951 (6%)
Query: 10 FFVQAGNS---DLSYHRDCSQIYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQ 66
F V GNS + + ++I+ + L + V+LS++LS+T+GCP GR VF+ +++
Sbjct: 119 FGVDYGNSIIHEAGNYFALARIFSSGKELNDGVQLSTNLSFTLGCPTIGRVVFISPLKTH 178
Query: 67 FLTGLVNGSNKPYNGEANHFSVCTCQELHLEL-----VPLRSRLKMNGAAFSKMKVSAER 121
+N + K + E N + C+EL L+L V + L + +S+ KV
Sbjct: 179 LCNDPLNDNGKLKSTEVNFLRIYNCKELFLDLASSTNVSTKDNLFPSSTIYSR-KV---H 234
Query: 122 SRDQLGNGIDSSPKTPMYQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLE 181
R + GN L+S S + ASP ++ VS N S V + I+E L
Sbjct: 235 GRSESGN--------------LTSPSTMRSASPKCDEVVS---NLPSPFVHSL-IEESLG 276
Query: 182 DESAIKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPA-----DLTNERS 236
D++ K LQT A++ LY R +L GNLV +P+LS++ F V GA L D N S
Sbjct: 277 DDTVRKTLQTIASNELYKRCVLRGNLVTIPVLSDLCTFHVRGAKGLSGYDDSYDSVNSGS 336
Query: 237 QP--QVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQD 294
Q S ++ + AF I+ TKV++ VS++ +E N + + N++A V+
Sbjct: 337 DDHFQHYSSDEYANCAFNIDQLTKVFINVQSTTVSETNQEIFPSNVEPQNLNIRAKVKPK 396
Query: 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354
+ KLGGLSKEY++LKDIIISSS+ ST+SSLG R TKGVLLHGPPGTGKTSLA+L AHD+G
Sbjct: 397 VRKLGGLSKEYSVLKDIIISSSLNSTMSSLGFRTTKGVLLHGPPGTGKTSLAQLSAHDAG 456
Query: 355 VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQR 414
VNLF +NGPE++SQ +GESEQALH+VF+ ASQ+APAVV IDELDAIAPARKDGGEELSQR
Sbjct: 457 VNLFYLNGPEIISQYHGESEQALHDVFEEASQAAPAVVLIDELDAIAPARKDGGEELSQR 516
Query: 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474
+VATLLNLMDG+ R+ G LVIA+TNRPDSIEPALRRPGRLDREIEI VPSP QRL+ILH
Sbjct: 517 IVATLLNLMDGIKRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHT 576
Query: 475 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTG-T 533
+LS MEHSL +V++L+M THGFVGADLAALCNEAALVC+RRY K + SSD HS G +
Sbjct: 577 ILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYQKFKVSSD-YHSFGRS 635
Query: 534 LFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADN 593
+ E H+ + + + S +I+E + TSD P + +SS+ E+
Sbjct: 636 VIAEEQHNISGVCQNLVSSSISEHT---------FTSD-PLTCVSSN--------EV--- 674
Query: 594 FHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQRE 653
V+DS SE C LK+ DFE ARMKVRPSAMREVILEVPKVKWED+GGQ E
Sbjct: 675 ----VADSEDSFNSSEIKCKLKVVFEDFEIARMKVRPSAMREVILEVPKVKWEDIGGQME 730
Query: 654 VKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713
VK QLME VEWPQKHQ+AFKRIGTRPP G+L+FGPPGCSKTLMARAVASEAGLNFLAVKG
Sbjct: 731 VKAQLMETVEWPQKHQDAFKRIGTRPPAGVLLFGPPGCSKTLMARAVASEAGLNFLAVKG 790
Query: 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773
PELFSKWVGESEKAVRSLFAKARANAPSI+FFDEIDGLA IRGKESDGVSVSDRVMSQLL
Sbjct: 791 PELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLL 850
Query: 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP 833
VELDGLHQRV VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE++REEIFRIHL K+P
Sbjct: 851 VELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVP 910
Query: 834 CSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEI 893
CS DV+ R+LA LS+GCTGADISLICRE+A+ A+EENL+AS I+MQHL+TA RHV+PSE
Sbjct: 911 CSPDVSTRKLASLSQGCTGADISLICRESALLALEENLEASVISMQHLETAARHVKPSET 970
Query: 894 HSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRF 944
Y+ELS++FQRLV S+++ E + S+S + W L+KS L RF
Sbjct: 971 APYRELSSRFQRLVCSSSQ--EVNVVCQQSRSNWFSFWPLVKSAVLLFSRF 1019
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438683|ref|XP_004137117.1| PREDICTED: calmodulin-interacting protein 111-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/951 (58%), Positives = 682/951 (71%), Gaps = 67/951 (7%)
Query: 10 FFVQAGNS---DLSYHRDCSQIYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQ 66
F V GNS + + ++I+ + L + V+LS++LS+T+GCP GR VF+ +++
Sbjct: 119 FGVDYGNSIIHEAGNYFALARIFSSGKELNDGVQLSTNLSFTLGCPTIGRVVFISPLKTH 178
Query: 67 FLTGLVNGSNKPYNGEANHFSVCTCQELHLEL-----VPLRSRLKMNGAAFSKMKVSAER 121
+N + K + E N + C+EL L+L V + L + +S+ KV
Sbjct: 179 LCNDPLNDNGKLKSTEVNFLRIYNCKELFLDLASSTNVSTKDNLFPSSTIYSR-KV---H 234
Query: 122 SRDQLGNGIDSSPKTPMYQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLE 181
R + GN L+S S + ASP ++ VS N S V + + E L
Sbjct: 235 GRSESGN--------------LTSPSTMRSASPKCDEVVS---NLPSPFVHS--LIESLG 275
Query: 182 DESAIKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPA-----DLTNERS 236
D++ K LQT A++ LY R +L GNLV +P+LS++ F V GA L D N S
Sbjct: 276 DDTVRKTLQTIASNELYKRCVLRGNLVTIPVLSDLCTFHVRGAKGLSGYDDSYDSVNSGS 335
Query: 237 QP--QVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQD 294
Q S ++ + AF I+ TKV++ VS++ +E N + + N++A V+
Sbjct: 336 DDHFQHYSSDEYANCAFNIDQLTKVFINVQSTTVSETNQEIFPSNVEPQNLNIRAKVKPK 395
Query: 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354
+ KLGGLSKEY++LKDIIISSS+ ST+SSLG R TKGVLLHGPPGTGKTSLA+L AHD+G
Sbjct: 396 VRKLGGLSKEYSVLKDIIISSSLNSTMSSLGFRTTKGVLLHGPPGTGKTSLAQLSAHDAG 455
Query: 355 VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQR 414
VNLF +NGPE++SQ +GESEQALH+VF+ ASQ+APAVV IDELDAIAPARKDGGEELSQR
Sbjct: 456 VNLFYLNGPEIISQYHGESEQALHDVFEEASQAAPAVVLIDELDAIAPARKDGGEELSQR 515
Query: 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474
+VATLLNLMDG+ R+ G LVIA+TNRPDSIEPALRRPGRLDREIEI VPSP QRL+ILH
Sbjct: 516 IVATLLNLMDGIKRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHT 575
Query: 475 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTG-T 533
+LS MEHSL +V++L+M THGFVGADLAALCNEAALVC+RRY K + SSD HS G +
Sbjct: 576 ILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYQKFKVSSD-YHSFGRS 634
Query: 534 LFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADN 593
+ E H+ + + + S +I+E + TSD P + +SS+ E+
Sbjct: 635 VIAEEQHNISGVCQNLVSSSISEHT---------FTSD-PLTCVSSN--------EV--- 673
Query: 594 FHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQRE 653
V+DS SE C LK+ DFE ARMKVRPSAMREVILEVPKVKWED+GGQ E
Sbjct: 674 ----VADSEDSFNSSEIKCKLKVVFEDFEIARMKVRPSAMREVILEVPKVKWEDIGGQME 729
Query: 654 VKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713
VK QLME VEWPQKHQ+AFKRIGTRPP G+L+FGPPGCSKTLMARAVASEAGLNFLAVKG
Sbjct: 730 VKAQLMETVEWPQKHQDAFKRIGTRPPAGVLLFGPPGCSKTLMARAVASEAGLNFLAVKG 789
Query: 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773
PELFSKWVGESEKAVRSLFAKARANAPSI+FFDEIDGLA IRGKESDGVSVSDRVMSQLL
Sbjct: 790 PELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLL 849
Query: 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP 833
VELDGLHQRV VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE++REEIFRIHL K+P
Sbjct: 850 VELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVP 909
Query: 834 CSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEI 893
CS DV+ R+LA LS+GCTGADISLICRE+A+ A+EENL+AS I+MQHL+TA RHV+PSE
Sbjct: 910 CSPDVSTRKLASLSQGCTGADISLICRESALLALEENLEASVISMQHLETAARHVKPSET 969
Query: 894 HSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRF 944
Y+ELS++FQRLV S+++ E + S+S + W L+KS L RF
Sbjct: 970 APYRELSSRFQRLVCSSSQ--EVNVVCQQSRSNWFSFWPLVKSAVLLFSRF 1018
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509263|ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago truncatula] gi|355499935|gb|AES81138.1| AAA family ATPase CDC48 subfamily [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/895 (55%), Positives = 620/895 (69%), Gaps = 63/895 (7%)
Query: 28 IYPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQSQFLTGLVNGSNKPYNGEANHFS 87
++P +VLK+ VRLS +L + MG P G VFV+ + Q L YN
Sbjct: 145 VFPSNKVLKDGVRLSLNLFFAMGRPPLGTCVFVHPVHKQSLI---------YN------- 188
Query: 88 VCTCQELHLELVPLRSR--LKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTPMYQPRLSS 145
C+E++L+L +S LK+N + + +S +SR Q N I +SPKTP Y R S+
Sbjct: 189 ---CKEIYLQLATCKSGTPLKVNNSP--SLDLSKSKSRVQTENDIVASPKTPSYGSRFSN 243
Query: 146 QSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCG 205
SV +SPV EDS S + N +V +FD+ + L +ES+ KLL+TCA LYSR LL G
Sbjct: 244 DSV--YSSPVYEDSASSVTDNNGQSVTSFDVSKALGNESSKKLLETCATGLLYSRCLLLG 301
Query: 206 NLVAVPMLSEISIFLVIGANKLPADLT----NERSQPQVTES---MDHESNAFVINHETK 258
NLV V MLSE IF V+ K+ + N S + +S +++ + AF +N ETK
Sbjct: 302 NLVTVQMLSEFFIFRVMDIKKVSTTIYDYSLNGSSNLNLKDSEMAVENVNLAFTVNWETK 361
Query: 259 VYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK 318
V+L P N + + L +++ +ISKLGGLSKE +LK II S S+
Sbjct: 362 VFLSLPSNVAFEESIQRDLSCLKLD----------NISKLGGLSKEEILLKRII-SFSLN 410
Query: 319 STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALH 378
LS G + T+GVLLHGPPGTGKTSLA+LCAHD+GVN F++NGPE+V++NYGESE+AL
Sbjct: 411 DILSRFGQQNTRGVLLHGPPGTGKTSLAQLCAHDAGVNFFSINGPEIVTENYGESEKALQ 470
Query: 379 EVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438
EVFDSA Q+APAV+FID++DAIAP RKDGGEELS+R+V TLL LMDG+ R +G++VIAAT
Sbjct: 471 EVFDSAIQAAPAVLFIDKIDAIAPPRKDGGEELSKRLVVTLLGLMDGIRRNEGLVVIAAT 530
Query: 439 NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498
NR D I+PALRRPGR D+E+EI VPS +R +IL A+L ++HSL ++++E L+ THGF
Sbjct: 531 NRLDRIDPALRRPGRFDKEVEIGVPSQVERGDILRAILGEIDHSLSETQIEELASITHGF 590
Query: 499 VGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESS 558
VGADL L N AAL+CLRRY++ + S+ + + + D S IT S
Sbjct: 591 VGADLVGLRNWAALICLRRYAEQKLKKTCNASSDDITKQPTPLKSATNSKDHSGIITSSV 650
Query: 559 RDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLEL 618
D + +SLL S L G SEI D + E+ LK+
Sbjct: 651 SDM---------SVASSLLLPSF-LMGETSEIIDETPD----------HGEEEHILKVTF 690
Query: 619 VDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR 678
DF+KAR ++RPSAMREV LEVPKV WED+GGQ+EVK QL+EAV WPQKH++AF RIGT
Sbjct: 691 EDFQKARPEIRPSAMREVTLEVPKVNWEDIGGQKEVKNQLLEAVVWPQKHRDAFTRIGTD 750
Query: 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN 738
PPT +LMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF KARAN
Sbjct: 751 PPTAVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFDKARAN 810
Query: 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798
AP+IIFFDEID LA RGK+ DGVSVSDRVM+QLLV+LDG+ +RV+V VIAATNRPDKID
Sbjct: 811 APAIIFFDEIDSLAITRGKDGDGVSVSDRVMAQLLVQLDGVLKRVDVIVIAATNRPDKID 870
Query: 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLI 858
PALLR GRFDRLLYVGPPNE DREEIF IHLRK P SDV+++ELA L++G TGADI+ I
Sbjct: 871 PALLRQGRFDRLLYVGPPNEIDREEIFSIHLRKTPYDSDVSMKELAQLTDGYTGADIAHI 930
Query: 859 CREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEA 913
CR+AA++A+EE+ DAS +TM+H K AI+ VQPSE SY++LSAKFQR V S+ A
Sbjct: 931 CRQAALAALEESFDASVVTMKHFKMAIKQVQPSEFQSYQKLSAKFQRAVFSDERA 985
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 957 | ||||||
| TAIR|locus:2103555 | 1022 | CIP111 "Cam interacting protei | 0.782 | 0.732 | 0.610 | 6.4e-267 | |
| DICTYBASE|DDB_G0278435 | 886 | DDB_G0278435 "AAA ATPase domai | 0.286 | 0.309 | 0.565 | 9.1e-139 | |
| UNIPROTKB|E2RC37 | 893 | SPATA5 "Uncharacterized protei | 0.304 | 0.325 | 0.515 | 2.6e-132 | |
| UNIPROTKB|Q8NB90 | 893 | SPATA5 "Spermatogenesis-associ | 0.304 | 0.325 | 0.508 | 4.8e-131 | |
| POMBASE|SPBC56F2.07c | 809 | SPBC56F2.07c "ribosome biogene | 0.303 | 0.358 | 0.527 | 6.1e-131 | |
| MGI|MGI:1927170 | 893 | Spata5 "spermatogenesis associ | 0.304 | 0.325 | 0.512 | 1.1e-129 | |
| SGD|S000004389 | 780 | AFG2 "ATPase of the CDC48/PAS1 | 0.300 | 0.369 | 0.484 | 3.4e-126 | |
| CGD|CAL0002187 | 766 | orf19.6432 [Candida albicans ( | 0.301 | 0.377 | 0.478 | 5.1e-121 | |
| TAIR|locus:2101933 | 815 | AtCDC48B "AT3G53230" [Arabidop | 0.319 | 0.375 | 0.443 | 9.7e-118 | |
| ZFIN|ZDB-GENE-060312-22 | 805 | zgc:136908 "zgc:136908" [Danio | 0.272 | 0.324 | 0.473 | 1e-117 |
| TAIR|locus:2103555 CIP111 "Cam interacting protein 111" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2200 (779.5 bits), Expect = 6.4e-267, Sum P(2) = 6.4e-267
Identities = 472/773 (61%), Positives = 562/773 (72%)
Query: 174 FDIKEVLEDESAIKLLQTCAASWLYSRSLL--CGNLVAVPMLSEISIFLVIGANKLPADL 231
F K+ ES+I L + + S+ LL C + P F+ +
Sbjct: 267 FSCKQRFSSESSIDLREVLSNE--SSKKLLQICASSWLYPCSLLYGNFVSVPILSEICIF 324
Query: 232 TNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATV 291
+R+ + +++ + ++AF+IN ETKVYL+ L+ S+ ++ T ++F + V
Sbjct: 325 CVKRADKRPSDT-SNRNHAFMINQETKVYLHHTLDLASE-IQGRTFVQG-LQFDEGE-NV 380
Query: 292 EQDISKLGGLSKEYAILKDXXXXXXXXXXXXXXXXRPTKGVLLHGPPGTGKTSLARLCAH 351
+ISKLGGLSKEYAIL+D RPTKGVL+HGPPGTGKTSLAR A
Sbjct: 381 GCEISKLGGLSKEYAILRDIIDSSSIKNSLSSLGLRPTKGVLIHGPPGTGKTSLARTFAR 440
Query: 352 DSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEEL 411
SGVN F+VNGPE++SQ GESE+AL EVF SAS + PAVVFID+LDAIAPARK+GGEEL
Sbjct: 441 HSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEEL 500
Query: 412 SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEI 471
SQRMVATLLNLMDG+ RTDGV+VIAATNRPDSIEPALRRPGRLDREIEI VPS QR +I
Sbjct: 501 SQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDI 560
Query: 472 LHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHST 531
LH +L GM HSL + +VE L+MATHGFVGADL+ALC EAA VCLRR+ Q+SS S+
Sbjct: 561 LHIILRGMRHSLSNIQVEQLAMATHGFVGADLSALCCEAAFVCLRRHLD-QSSS----SS 615
Query: 532 GTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCXXXXXXXXXXXXXXXRG-TVSEI 590
E + + +S S N+++ S D DSAS C TVS +
Sbjct: 616 NLPLE-----EAPIAES--SSNMSDISSDSSDSASSCITISATTSGAQRSFSLDETVSLV 668
Query: 591 ADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGG 650
AD+ N + S M + L + DFE A+ K+RPSAMREVILEVPKV WEDVGG
Sbjct: 669 ADDIQNNGNSCSEQMLRKQGEHTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGG 728
Query: 651 QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710
Q EVK QLMEAVEWPQKHQ+AFKRIGTRPP+GILMFGPPGCSKTLMARAVASEA LNFLA
Sbjct: 729 QNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLA 788
Query: 711 VKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770
VKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID LA+IRGKE+DGVSVSDRVMS
Sbjct: 789 VKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMS 848
Query: 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR 830
QLLVELDGLHQRV VTVIAATNRPDKID ALLRPGRFDRLLYVGPPNETDRE I +IHLR
Sbjct: 849 QLLVELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLR 908
Query: 831 KIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890
KIPCSSD+ ++ELA +++G TGADISLICREAAI+A+EE+L+ I+M+HLK AI ++P
Sbjct: 909 KIPCSSDICLKELASITKGYTGADISLICREAAIAALEESLEMEEISMRHLKAAISQIEP 968
Query: 891 SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCR 943
+EI SYK LS KFQRLVH++ + +E Q P S +WT ++S+++FL R
Sbjct: 969 TEILSYKALSEKFQRLVHTDPQREEEVTQ--PGNKSRS-LWTPLRSVAMFLRR 1018
|
|
| DICTYBASE|DDB_G0278435 DDB_G0278435 "AAA ATPase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 9.1e-139, Sum P(3) = 9.1e-139
Identities = 156/276 (56%), Positives = 217/276 (78%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
+KL + D A +V+PS+MREV++E+PKV W D+GGQ +K +L EA+EWP K+ ++F
Sbjct: 590 IKLSMNDMLLALNQVKPSSMREVVVEIPKVFWGDIGGQEHIKQKLKEAIEWPLKYPQSFI 649
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
R+G +PP GIL++GPPGCSKTL+A+A+A+E+GLNF+AVKGPEL SKWVGESE+AVR +F
Sbjct: 650 RMGIKPPKGILLYGPPGCSKTLLAKALATESGLNFIAVKGPELLSKWVGESERAVRDIFK 709
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KAR N+PSI+FFDEIDGLA R E G +RV+SQLL E+DG+ NVT+I ATNR
Sbjct: 710 KARQNSPSILFFDEIDGLAISRSGEGSGAV--ERVVSQLLTEMDGIQPLTNVTIIGATNR 767
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD ID A+LR GR DR+LY+ PP+ R+EIF IHL+K+P SSD++I +L+ L++G +GA
Sbjct: 768 PDIIDKAILRAGRIDRILYISPPDLDARKEIFNIHLKKVPHSSDIDINQLSILTDGYSGA 827
Query: 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889
+++ ICREA+I+A++E+++A I M H +AI +V+
Sbjct: 828 EVTSICREASIAAMKEDINAKEINMSHFISAIGNVK 863
|
|
| UNIPROTKB|E2RC37 SPATA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.6e-132, Sum P(2) = 2.6e-132
Identities = 150/291 (51%), Positives = 212/291 (72%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
+K+ L DF + +RPSAMREV ++VP V W D+GG +K +L +AVEWP KH E+F
Sbjct: 595 VKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFI 654
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
R+G +PP G+L++GPPGCSKT++A+A+A+E+GLNFLA+KGPEL +K+VGESE+AVR +F
Sbjct: 655 RMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFR 714
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KARA +PSIIFFDE+D LA RG S +V+DRV++QLL E+DG+ Q +VT++AATNR
Sbjct: 715 KARAVSPSIIFFDELDALAIERGSSSGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNR 774
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD+ID AL+RPGR DR++YV P+ R EI + +P S+DVN+ EL ++ +GA
Sbjct: 775 PDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNDVNLDELIFQTDTYSGA 834
Query: 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQ 904
+I +CREAA+ A+EE++ A+ IT +H A+ V P S + ++Q
Sbjct: 835 EIIAVCREAALLALEEDIQANSITRRHFTRALSTVTPRISKSLRRFYEEYQ 885
|
|
| UNIPROTKB|Q8NB90 SPATA5 "Spermatogenesis-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 148/291 (50%), Positives = 211/291 (72%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
+K+ L DF +A +RPSAMRE+ ++VP V W D+GG +K +L +AVEWP KH E+F
Sbjct: 595 VKITLKDFLQAMNDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFI 654
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
R+G +PP G+L++GPPGCSKT++A+A+A+E+GLNFLA+KGPEL +K+VGESE+AVR F
Sbjct: 655 RMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFR 714
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KARA APSIIFFDE+D LA RG +V+DRV++QLL E+DG+ Q +VT++AATNR
Sbjct: 715 KARAVAPSIIFFDELDALAVERGSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNR 774
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD+ID AL+RPGR DR++YV P+ R EIF++ +P S++V++ EL ++ +GA
Sbjct: 775 PDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQTDAYSGA 834
Query: 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQ 904
+I +CREAA+ A+EE++ A+ I +H A+ V P S + +Q
Sbjct: 835 EIVAVCREAALLALEEDIQANLIMKRHFTQALSTVTPRIPESLRRFYEDYQ 885
|
|
| POMBASE|SPBC56F2.07c SPBC56F2.07c "ribosome biogenesis factor recycling AAA family ATPase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 155/294 (52%), Positives = 207/294 (70%)
Query: 616 LELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRI 675
+++ D E A VR SAMRE ++E P V W D+GGQ EVK +L E+VEWP H E F R+
Sbjct: 518 VQMDDLEFALSSVRQSAMREFMMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRL 577
Query: 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA 735
G RPP G+L++GPPGCSKT+ A+A+A+E GLNF+AVKGPELF K+VGESE+AVR +F KA
Sbjct: 578 GVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKA 637
Query: 736 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795
R +PS+IFFDEID L A RG+++ SDRV++ LL ELDG+ NV V+AATNRPD
Sbjct: 638 RQASPSVIFFDEIDALTANRGEDNS----SDRVVAALLNELDGIEALRNVLVLAATNRPD 693
Query: 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADI 855
IDPAL+RPGR DRLLYVGPPN R++I +I K+ + DV++ +A +EGC+GA++
Sbjct: 694 MIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEV 753
Query: 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHS 909
+C+EA + A+ E+L+A I H KTA+ ++ + E A F V S
Sbjct: 754 VALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKAITRDMLEYYASFSESVTS 807
|
|
| MGI|MGI:1927170 Spata5 "spermatogenesis associated 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 149/291 (51%), Positives = 209/291 (71%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
+K+ L DF + +RPSAMREV ++VP V W D+GG +K +L +AVEWP KH ++F
Sbjct: 595 VKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFN 654
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
R+G +PP G+L++GPPGCSKT++A+A+A+E+GLNFLA+KGPEL +K+VGESE+AVR +F
Sbjct: 655 RMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFR 714
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KARA APSIIFFDE+D LA RG S +V+DRV++QLL E+DG+ Q NVTV+AATNR
Sbjct: 715 KARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNR 774
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD+ID AL+RPGR DR++YV P+ R EI + +P S++V++ EL ++ +GA
Sbjct: 775 PDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGA 834
Query: 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQ 904
+I +C+EAA+ A+EEN+ A I +H A+ V P S + +Q
Sbjct: 835 EIIAVCKEAALLALEENIKADCIMKRHFTQALSIVTPRIPESLRRFYEDYQ 885
|
|
| SGD|S000004389 AFG2 "ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 143/295 (48%), Positives = 210/295 (71%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 672
+LK+ L D E A + +RPSAMRE+ LE+PKV W D+GGQ E+KT++ E ++ P + E F
Sbjct: 483 SLKVTLKDVESAMVDIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETF 542
Query: 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
R+G P G+L++GPPGCSKTL A+A+A+E+G+NFLAVKGPE+F+K+VGESE+A+R +F
Sbjct: 543 ARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIF 602
Query: 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792
KAR+ APSIIFFDEID L+ R + S ++ V++ LL E+DG+ + V ++AATN
Sbjct: 603 RKARSAAPSIIFFDEIDALSPDR--DGSSTSAANHVLTSLLNEIDGVEELKGVVIVAATN 660
Query: 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCT 851
RPD+ID ALLRPGR DR +YVGPP+ R EI + +K S V++ ELA +EG +
Sbjct: 661 RPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTEGYS 720
Query: 852 GADISLICREAAISAIEENLDASRITMQHLKTAI----RHVQPSEIHSYKELSAK 902
GA++ L+C+EA ++AI E+LD +++ ++H + A R + P + Y+E + +
Sbjct: 721 GAEVVLLCQEAGLAAIMEDLDVAKVELRHFEKAFKGIARGITPEMLSYYEEFALR 775
|
|
| CGD|CAL0002187 orf19.6432 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 142/297 (47%), Positives = 213/297 (71%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 672
A+K+ + D A ++RPSAMRE+ LE+PKV W D+GGQ E+K +L+E V+ P + ++F
Sbjct: 466 AIKVTVDDVYHALPEIRPSAMREIFLEMPKVHWSDIGGQEELKRKLIEVVQLPLEASDSF 525
Query: 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
K +G P G+L++GPPGCSKTL A+A+A+E+GLNFLAVKGPE+F+K+VGESE+A+R +F
Sbjct: 526 KNLGVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIREIF 585
Query: 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792
KARA +PSIIFFDEID +A R +S + S+ V++ LL E+DG+ + V ++ ATN
Sbjct: 586 RKARAASPSIIFFDEIDAIAGDRDGDSSTTAASN-VLTSLLNEIDGVEELKGVVIVGATN 644
Query: 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS---DVNIRELACLSEG 849
+P +IDPALLRPGR DR +YV PP+ R +I + RK S V++++LA L++G
Sbjct: 645 KPTEIDPALLRPGRLDRHIYVAPPDYDARLQILQKCSRKFNLQSGDESVDLQKLAELTDG 704
Query: 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAI----RHVQPSEIHSYKELSAK 902
C+GA+++L+C+EA ++AI EN +A+ +T +H + A+ R + P + Y++ S K
Sbjct: 705 CSGAEVTLLCQEAGLAAIMENKEATTVTNKHFEHALKGISRGITPEMLEYYEKFSKK 761
|
|
| TAIR|locus:2101933 AtCDC48B "AT3G53230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
Identities = 142/320 (44%), Positives = 200/320 (62%)
Query: 621 FEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP 680
F+ A PSA+RE ++EVP V WED+GG VK +L E V++P +H E F++ G P
Sbjct: 456 FQTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS 515
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAP 740
G+L +GPPGC KTL+A+A+A+E NF+++KGPEL + W GESE VR +F KAR +AP
Sbjct: 516 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAP 575
Query: 741 SIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799
++FFDE+D +A RG D +DRV++QLL E+DG++ + V +I ATNRPD IDP
Sbjct: 576 CVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDP 635
Query: 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLIC 859
ALLRPGR D+L+Y+ P+E R +IF+ LRK P + DV++R LA ++G +GADI+ IC
Sbjct: 636 ALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEIC 695
Query: 860 REAAISAIEENL--DASRITMQHLKTAIRHVQPSEIHSYK----ELSAKFQRLVHSNAEA 913
+ + AI EN+ D + + EI K E S K+ R S ++A
Sbjct: 696 QRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAEIKAGHFEESMKYAR--RSVSDA 753
Query: 914 DESGYQ-----LRPSKSIGS 928
D YQ L+ S+ GS
Sbjct: 754 DIRKYQAFAQTLQQSRGFGS 773
|
|
| ZFIN|ZDB-GENE-060312-22 zgc:136908 "zgc:136908" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 1.0e-117, Sum P(3) = 1.0e-117
Identities = 124/262 (47%), Positives = 181/262 (69%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 672
+L + + DF+ A + PSA+RE ++EVP V WED+GG EVK +L E V++P ++ + F
Sbjct: 446 SLAVTMDDFKWALSQSNPSALRETVVEVPHVNWEDIGGLDEVKRELQELVQYPVEYPDKF 505
Query: 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
+ G P G+L +GPPGC KTL+A+A+A+E NF+++KGPEL + W GESE VR +F
Sbjct: 506 LKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVF 565
Query: 733 AKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791
KAR AP I+FFDE+D +A RG + D +DRV++Q+L E+DG+ + NV +I AT
Sbjct: 566 DKARQAAPCILFFDELDSIAKARGGGAGDAGGAADRVINQILTEMDGMTNKKNVFIIGAT 625
Query: 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851
NRPD IDPA+LRPGR D+L+Y+ P+ R I R +LRK P + DV++ L+ ++EG +
Sbjct: 626 NRPDIIDPAILRPGRLDQLIYIPLPDMPSRTAILRANLRKSPVAKDVDLMYLSKITEGFS 685
Query: 852 GADISLICREAAISAIEENLDA 873
GAD++ IC+ A AI E ++A
Sbjct: 686 GADLTEICQRACKLAIREAIEA 707
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LET7 | CI111_ARATH | No assigned EC number | 0.6093 | 0.9164 | 0.8581 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_VI000285 | hypothetical protein (1042 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.06420003 | hypothetical protein (123 aa) | • | 0.485 | |||||||
 | gw1.1458.1.1 | annotation not avaliable (212 aa) | • | 0.420 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 957 | |||
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 1e-116 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-102 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 2e-91 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 4e-91 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 2e-80 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 1e-79 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 3e-72 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 4e-66 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 3e-63 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 1e-60 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 3e-59 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 2e-57 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 9e-57 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 5e-56 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 1e-53 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 7e-53 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 7e-52 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 7e-51 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 4e-50 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 9e-50 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 1e-49 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 8e-48 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 5e-46 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 8e-46 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 7e-45 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 1e-44 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 8e-41 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 2e-38 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 1e-37 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 1e-36 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 5e-35 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 4e-29 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 2e-28 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 2e-26 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 8e-25 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-18 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-14 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 7e-13 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 9e-08 | |
| TIGR02881 | 261 | TIGR02881, spore_V_K, stage V sporulation protein | 5e-07 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 5e-07 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 6e-07 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 7e-07 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 1e-06 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 1e-06 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 2e-06 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 4e-06 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 4e-06 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 1e-05 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 2e-05 | |
| PHA02544 | 316 | PHA02544, 44, clamp loader, small subunit; Provisi | 2e-05 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 2e-05 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 3e-05 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 5e-05 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 1e-04 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 1e-04 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 2e-04 | |
| CHL00206 | 2281 | CHL00206, ycf2, Ycf2; Provisional | 2e-04 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 3e-04 | |
| pfam00910 | 105 | pfam00910, RNA_helicase, RNA helicase | 4e-04 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 5e-04 | |
| COG1484 | 254 | COG1484, DnaC, DNA replication protein [DNA replic | 6e-04 | |
| COG0542 | 786 | COG0542, clpA, ATP-binding subunits of Clp proteas | 7e-04 | |
| COG3284 | 606 | COG3284, AcoR, Transcriptional activator of acetoi | 8e-04 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 0.001 | |
| TIGR02880 | 284 | TIGR02880, cbbX_cfxQ, probable Rubsico expression | 0.002 | |
| TIGR03420 | 226 | TIGR03420, DnaA_homol_Hda, DnaA regulatory inactiv | 0.002 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 0.003 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 0.004 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
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Score = 373 bits (960), Expect = e-116
Identities = 166/313 (53%), Positives = 225/313 (71%), Gaps = 21/313 (6%)
Query: 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
LK+ + DF +A V PSA+REV++EVP V+W D+GG EVK +L EAVEWP KH E F+
Sbjct: 421 LKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFE 480
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
++G RPP G+L+FGPPG KTL+A+AVA+E+G NF+AV+GPE+ SKWVGESEKA+R +F
Sbjct: 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFR 540
Query: 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793
KAR AP+IIFFDEID +A RG SV+DR+++QLL E+DG+ + NV VIAATNR
Sbjct: 541 KARQAAPAIIFFDEIDAIAPARGA-RFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNR 599
Query: 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853
PD +DPALLRPGRFDRL+ V PP+E R+EIF+IH R +P + DV++ ELA ++EG TGA
Sbjct: 600 PDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGA 659
Query: 854 DISLICREAAISAI----------------EENLDASRITMQHLKTAIRHVQPS----EI 893
DI +CREAA++A+ EE L ++ M+H A++ V+PS ++
Sbjct: 660 DIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDM 719
Query: 894 HSYKELSAKFQRL 906
Y+ L+ + +RL
Sbjct: 720 LRYERLAKELKRL 732
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This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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Score = 327 bits (839), Expect = e-102
Identities = 149/297 (50%), Positives = 197/297 (66%), Gaps = 9/297 (3%)
Query: 607 MSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQ 666
+ G + + DFE+A KV PS R V+ E V +D+GG E K +L EA+E P
Sbjct: 205 IDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPL 262
Query: 667 KHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEK 726
K E F+++G RPP G+L++GPPG KTL+A+AVA E+ F++VKG EL SKWVGESEK
Sbjct: 263 KRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEK 322
Query: 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786
+R LF KAR APSIIF DEID LA+ RG DG RV+ QLL ELDG+ + V
Sbjct: 323 NIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEGVL 380
Query: 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELA 844
VIAATNRPD +DPALLRPGRFDRL+YV P+ +R EIF+IHLR K P + DV++ ELA
Sbjct: 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELA 440
Query: 845 CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSA 901
++EG +GADI+ + REAA+ A+ E +T+ A++ ++PS +Y+E
Sbjct: 441 EITEGYSGADIAALVREAALEALREARRR-EVTLDDFLDALKKIKPSV--TYEEWKE 494
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Length = 494 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
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Score = 295 bits (758), Expect = 2e-91
Identities = 129/265 (48%), Positives = 166/265 (62%), Gaps = 9/265 (3%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
R AM EVI E P V +ED+GG E ++ EAVE P K E F+ +G PP G+L++G
Sbjct: 115 PRVQAM-EVI-ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYG 172
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KTL+A+AVA E F+ V G EL K++GE + VR LF AR APSIIF DE
Sbjct: 173 PPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDE 232
Query: 748 IDGLAAIRGKESDGVSVS---DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804
ID +AA R G S R + QLL E+DG R NV +IAATNR D +DPA+LRP
Sbjct: 233 IDAIAAKR--TDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRP 290
Query: 805 GRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAI 864
GRFDR++ V P+E R EI +IH RK+ + DV++ ELA L+EG +GAD+ IC EA +
Sbjct: 291 GRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGM 350
Query: 865 SAIEENLDASRITMQHLKTAIRHVQ 889
AI + D + +TM+ AI V
Sbjct: 351 FAIRD--DRTEVTMEDFLKAIEKVM 373
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Length = 389 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 4e-91
Identities = 139/324 (42%), Positives = 181/324 (55%), Gaps = 27/324 (8%)
Query: 585 GTVSEIADNFHNGVSDSSGGMFMS-----------EKGC--AL---KLELVDFEKARMKV 628
GTV E+ D+ V S+G F+ E G AL +V +
Sbjct: 76 GTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDP 135
Query: 629 RPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGP 688
R S M EV E P V +ED+GG E ++ E VE P K+ E F+ +G PP G+L++GP
Sbjct: 136 RVSVM-EVE-EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGP 193
Query: 689 PGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEI 748
PG KTL+A+AVA++ F+ V G EL K++GE + VR LF AR APSIIF DEI
Sbjct: 194 PGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEI 253
Query: 749 DGLAAIRGKESDGVSVSD----RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804
D AI K D + D R M +LL +LDG R NV VI ATNRPD +DPALLRP
Sbjct: 254 D---AIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRP 310
Query: 805 GRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAI 864
GRFDR + P+E R EI +IH RK+ + DV++ LA L+EG +GAD+ IC EA +
Sbjct: 311 GRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGM 370
Query: 865 SAIEENLDASRITMQHLKTAIRHV 888
AI E +TM+ A+ V
Sbjct: 371 FAIRE--RRDEVTMEDFLKAVEKV 392
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Length = 406 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
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Score = 276 bits (706), Expect = 2e-80
Identities = 128/290 (44%), Positives = 188/290 (64%), Gaps = 20/290 (6%)
Query: 622 EKARMKVRPSAMREVI-LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP 680
E +++R +RE I +VPKV +ED+GG +E K ++ E VE P KH E F+ +G PP
Sbjct: 153 EATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPP 212
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAP 740
G+L++GPPG KTL+A+AVA+EAG F+++ GPE+ SK+ GESE+ +R +F +A NAP
Sbjct: 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP 272
Query: 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 800
SIIF DEID +A R +E G V RV++QLL +DGL R V VI ATNRPD +DPA
Sbjct: 273 SIIFIDEIDAIAPKR-EEVTG-EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPA 330
Query: 801 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICR 860
L RPGRFDR + + P++ R+EI ++H R +P + DV++ +LA ++ G GAD++ + +
Sbjct: 331 LRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390
Query: 861 EAAISAI-----------------EENLDASRITMQHLKTAIRHVQPSEI 893
EAA++A+ E L ++TM+ A++ V+PS I
Sbjct: 391 EAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAI 440
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This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 1e-79
Identities = 123/255 (48%), Positives = 159/255 (62%), Gaps = 4/255 (1%)
Query: 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKT 694
EV E P V +ED+GG E ++ EAVE P KH E F+ +G PP G+L++GPPG KT
Sbjct: 112 EVE-ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKT 170
Query: 695 LMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754
L+A+AVA E F+ V G EL K++GE + VR +F A+ APSIIF DEID +AA
Sbjct: 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAK 230
Query: 755 RGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYV 813
R G R + QLL ELDG R NV VIAATNRPD +DPALLRPGRFDR++ V
Sbjct: 231 RTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEV 290
Query: 814 GPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873
P+ R EI +IH RK+ + DV++ +A ++EG +GAD+ IC EA + AI E D
Sbjct: 291 PLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERD- 349
Query: 874 SRITMQHLKTAIRHV 888
+TM A+ V
Sbjct: 350 -YVTMDDFIKAVEKV 363
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 3e-72
Identities = 109/251 (43%), Positives = 155/251 (61%), Gaps = 4/251 (1%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
E PKV ++DV G E K +LME V++ K+ F ++G + P G+L+ GPPG KTL+A+
Sbjct: 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
AVA EAG+ F ++ G + +VG VR LF +A+ NAP IIF DEID + RG
Sbjct: 107 AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 166
Query: 759 -SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
G ++ ++QLLVE+DG V VIAATNRPD +DPALLRPGRFDR + V P+
Sbjct: 167 LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226
Query: 818 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877
REEI ++H + + DV+++ +A + G +GAD++ + EAA+ A +N IT
Sbjct: 227 IKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTE--IT 284
Query: 878 MQHLKTAIRHV 888
M ++ AI V
Sbjct: 285 MNDIEEAIDRV 295
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 4e-66
Identities = 112/242 (46%), Positives = 158/242 (65%), Gaps = 5/242 (2%)
Query: 278 PNAQIEFQNVQATVEQDISKLGGLSKEYAILKDII-ISSSVKSTLSSLGLRPTKGVLLHG 336
P + + V +DI GGL + +++++ + LG+ P KGVLL+G
Sbjct: 163 PVREEIERKVPKVTYEDI---GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYG 219
Query: 337 PPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDE 396
PPGTGKT LA+ A+++G ++NGPE++S+ YGESE+ L E+F A ++AP+++FIDE
Sbjct: 220 PPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDE 279
Query: 397 LDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDR 456
+DAIAP R++ E+ +R+VA LL LMDG+ V+VI ATNRPD+++PALRRPGR DR
Sbjct: 280 IDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDR 339
Query: 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516
EI I VP R EIL M + D +++ L+ THGFVGADLAAL EAA+ LR
Sbjct: 340 EIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAALAKEAAMAALR 398
Query: 517 RY 518
R+
Sbjct: 399 RF 400
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 3e-63
Identities = 100/222 (45%), Positives = 140/222 (63%), Gaps = 2/222 (0%)
Query: 298 LGGLSKEYAILKDIIISSSVKSTL-SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356
+GGL + LK+ I + + L LGLRP KGVLL+GPPGTGKT LA+ A +S
Sbjct: 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR 303
Query: 357 LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMV 416
+V G E++S+ GESE+ + E+F+ A + AP+++FIDE+D++A R + +R+V
Sbjct: 304 FISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVV 363
Query: 417 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476
LL +DG+ + +GVLVIAATNRPD ++PAL RPGR DR I + +P +RLEI L
Sbjct: 364 GQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423
Query: 477 SGMEHSLLDSEV-EYLSMATHGFVGADLAALCNEAALVCLRR 517
+ L + E L+ T G+ GAD+AAL EAAL LR
Sbjct: 424 RDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE 465
|
Length = 494 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 1e-60
Identities = 98/236 (41%), Positives = 140/236 (59%), Gaps = 7/236 (2%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
E P V + D+GG K ++ EAVE P E +++IG PP G+L++GPPG KT++A+
Sbjct: 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
AVA F+ V G E K++GE + VR +F AR NAPSIIF DE+D +I K
Sbjct: 198 AVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVD---SIATKR 254
Query: 759 SDGVSVSDRVMSQLLVEL----DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
D + +DR + ++L+EL DG Q NV VI ATNR D +DPALLRPGR DR +
Sbjct: 255 FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
P+ + IF+ K+ S +V++ + E + ADI+ IC+EA + A+ +N
Sbjct: 315 LPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370
|
Length = 398 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 3e-59
Identities = 123/329 (37%), Positives = 170/329 (51%), Gaps = 35/329 (10%)
Query: 585 GTVSEIADNFHNGVSDSSGGMF----MS-------EKGCALKL------------ELVDF 621
GT+ EI D H VS S G + +S E GC++ L + VD
Sbjct: 108 GTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDP 167
Query: 622 EKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT 681
+ MKV + P + D+GG + ++ EAVE P H E + IG +PP
Sbjct: 168 LVSVMKVD---------KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPK 218
Query: 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPS 741
G++++GPPG KTL+A+AVA+E FL V G EL K++G+ K VR LF A NAPS
Sbjct: 219 GVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPS 278
Query: 742 IIFFDEIDGLAAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 800
I+F DEID + R S G R M +LL +LDG R +V VI ATNR + +DPA
Sbjct: 279 IVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPA 338
Query: 801 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICR 860
L+RPGR DR + P+E + IF IH K+ + DV++ E + +GADI IC
Sbjct: 339 LIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398
Query: 861 EAAISAIEENLDASRITMQHLKTAIRHVQ 889
EA + A+ E ++T + A V
Sbjct: 399 EAGLLALRER--RMKVTQADFRKAKEKVL 425
|
Length = 438 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 2e-57
Identities = 109/265 (41%), Positives = 159/265 (60%), Gaps = 11/265 (4%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
KV + DV G E K +L E V+ K+ + ++ +G + P G+L+ GPPG KTL+A+AV
Sbjct: 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAV 203
Query: 701 ASEAGLNFLAVKGPELFSKW-VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK-E 758
A EAG+ F ++ G + F + VG VR LF +A+ NAP IIF DEID + RG
Sbjct: 204 AGEAGVPFFSISGSD-FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL 262
Query: 759 SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE 818
G ++ ++QLLVE+DG V VIAATNRPD +DPALLRPGRFDR + V P+
Sbjct: 263 GGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDI 322
Query: 819 TDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878
RE+I ++H + P + DV+++++A + G +GAD++ + EAA+ A N ITM
Sbjct: 323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE--ITM 380
Query: 879 QHLKTAIRHV-----QPSEIHSYKE 898
+ ++ AI V + S + S E
Sbjct: 381 RDIEEAIDRVIAGPERKSRVISEAE 405
|
Length = 596 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 9e-57
Identities = 96/204 (47%), Positives = 126/204 (61%), Gaps = 2/204 (0%)
Query: 318 KSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQAL 377
+G+RP KGVLL GPPGTGKT LA+ A +SG N V GPE++S+ GESE+A+
Sbjct: 476 PEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI 535
Query: 378 HEVFDSASQSAPAVVFIDELDAIAPAR-KDGGEELSQRMVATLLNLMDGVCRTDGVLVIA 436
E+F A Q+APA++F DE+DAIAPAR ++ R+V LL MDG+ V+VIA
Sbjct: 536 REIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIA 595
Query: 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH 496
ATNRPD ++PAL RPGR DR I + P R EI M + D ++E L+ T
Sbjct: 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTE 654
Query: 497 GFVGADLAALCNEAALVCLRRYSK 520
G+ GAD+ A+C EAA+ LR
Sbjct: 655 GYTGADIEAVCREAAMAALRESIG 678
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 5e-56
Identities = 91/209 (43%), Positives = 119/209 (56%), Gaps = 8/209 (3%)
Query: 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFD 382
LG+ P KGVLL+GPPGTGKT LA+ A+ + V G E+V + GE + + E+F+
Sbjct: 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFE 238
Query: 383 SASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
A + AP+++FIDE+DAI R D G+ QR + LLN +DG V VI ATN
Sbjct: 239 LAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298
Query: 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV--EYLSMATHG 497
RPD ++PAL RPGR DR+IE +P R EIL M L +V E L+ T G
Sbjct: 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN---LADDVDLELLARLTEG 355
Query: 498 FVGADLAALCNEAALVCLRRYSKIQTSSD 526
F GADL A+C EA + +R T D
Sbjct: 356 FSGADLKAICTEAGMFAIRERRDEVTMED 384
|
Length = 406 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 1e-53
Identities = 98/250 (39%), Positives = 141/250 (56%), Gaps = 10/250 (4%)
Query: 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS 702
+ + D+ G E K + E V + K E F +G + P G+L+ GPPG KTL+A+A+A
Sbjct: 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238
Query: 703 EAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV 762
EA + F ++ G E +VG VR LF KA+ N+P I+F DEID + RG G+
Sbjct: 239 EAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGA---GI 295
Query: 763 SV----SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE 818
++ ++QLL E+DG V VIAATNR D +D ALLRPGRFDR + V P+
Sbjct: 296 GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355
Query: 819 TDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878
R +I ++H R S DV++ +A + G +GAD++ + EAAI + ITM
Sbjct: 356 EGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK--ATITM 413
Query: 879 QHLKTAIRHV 888
+ + TAI V
Sbjct: 414 KEIDTAIDRV 423
|
Length = 638 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 7e-53
Identities = 95/219 (43%), Positives = 129/219 (58%), Gaps = 20/219 (9%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
V+ EVP V + D+GG Q+ +AVE P H E ++ G +PP G+L++GPPGC KTL
Sbjct: 172 VLEEVPDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTL 231
Query: 696 MARAVA-------SEAGLN---FLAVKGPELFSKWVGESEKAVRSLFAKARANA----PS 741
+A+AVA G FL +KGPEL +K+VGE+E+ +R +F +AR A P
Sbjct: 232 IAKAVANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPV 291
Query: 742 IIFFDEIDGLAAIRGKESDGVS--VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799
I+FFDE+D L RG GVS V V+ QLL E+DG+ NV VI A+NR D IDP
Sbjct: 292 IVFFDEMDSLFRTRGS---GVSSDVETTVVPQLLAEIDGVESLDNVIVIGASNREDMIDP 348
Query: 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-IPCSSD 837
A+LRPGR D + + P+ +IF +L +P D
Sbjct: 349 AILRPGRLDVKIRIERPDAEAAADIFAKYLTDDLPLPED 387
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 7e-52
Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSI 742
+L++GPPG KT +A+AVA E G F+ + G EL SK+VGESEK +R LF A+ AP +
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 743 IFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV-NVTVIAATNRPDKIDPAL 801
IF DEID LA RG S G S S RV++QLL ELDG + V VIAATNRPDK+DPAL
Sbjct: 61 IFIDEIDALAGSRG--SGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPAL 118
Query: 802 LRPGRFDRLLYVG 814
LR GRFDR++
Sbjct: 119 LR-GRFDRIIEFP 130
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 7e-51
Identities = 94/235 (40%), Positives = 135/235 (57%), Gaps = 5/235 (2%)
Query: 298 LGGLSKEYAILKDIIISSSVKSTL-SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356
+GGL ++ +++ + L +G+ P KGVLL+GPPGTGKT LA+ AH++
Sbjct: 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183
Query: 357 LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD---GGEELSQ 413
V G E+V + GE + + E+F+ A + AP+++FIDE+DAIA R D G+ Q
Sbjct: 184 FIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQ 243
Query: 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473
R + LL +DG V VIAATNRPD ++PAL RPGR DR IE+ +P RLEIL
Sbjct: 244 RTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILK 303
Query: 474 ALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVL 528
M+ + D ++E ++ T G GADL A+C EA + +R T D +
Sbjct: 304 IHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFI 357
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 4e-50
Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 2/249 (0%)
Query: 623 KARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTG 682
K M S R + + K + DV G E K ++ E VE+ + F+++G + P G
Sbjct: 129 KGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKG 187
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSI 742
+LM GPPG KTL+A+A+A EA + F + G + +VG VR +F +A+ AP I
Sbjct: 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 247
Query: 743 IFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPAL 801
IF DEID + RG G ++ ++Q+LVE+DG + VIAATNRPD +DPAL
Sbjct: 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 307
Query: 802 LRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICRE 861
LRPGRFDR + VG P+ RE+I ++H+R++P + D++ +A + G +GAD++ + E
Sbjct: 308 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 367
Query: 862 AAISAIEEN 870
AA+ A N
Sbjct: 368 AALFAARGN 376
|
Length = 644 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 9e-50
Identities = 66/130 (50%), Positives = 91/130 (70%), Gaps = 2/130 (1%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
+LL+GPPGTGKT+LA+ A + G ++G E+VS+ GESE+ L E+F++A + AP V
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 392 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIEPALRR 450
+FIDE+DA+A +R GG+ S+R+V LL +DG V+VIAATNRPD ++PAL R
Sbjct: 61 IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLR 120
Query: 451 PGRLDREIEI 460
GR DR IE
Sbjct: 121 -GRFDRIIEF 129
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 1e-49
Identities = 90/208 (43%), Positives = 120/208 (57%), Gaps = 8/208 (3%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
+G+ P KGVLL+GPPGTGKT LA+ AH++ V G E+V + GE + + E+F+
Sbjct: 160 VGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFEL 219
Query: 384 ASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440
A + AP+++FIDE+DAIA R D G+ QR + LL MDG V +IAATNR
Sbjct: 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV--EYLSMATHGF 498
D ++PA+ RPGR DR IE+ +P RLEIL M L +V E L+ T G
Sbjct: 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN---LADDVDLEELAELTEGA 336
Query: 499 VGADLAALCNEAALVCLRRYSKIQTSSD 526
GADL A+C EA + +R T D
Sbjct: 337 SGADLKAICTEAGMFAIRDDRTEVTMED 364
|
Length = 389 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 8e-48
Identities = 106/247 (42%), Positives = 144/247 (58%), Gaps = 8/247 (3%)
Query: 665 PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGES 724
P K E FK++G PP G+L+ GPPG KTL+ARA+A+E G FL++ GPE+ SK+VGES
Sbjct: 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGES 61
Query: 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 784
E +R LF +A APSIIF DEID LA R SD V RV++QLL +DGL R
Sbjct: 62 ELRLRELFEEAEKLAPSIIFIDEIDALAPKR--SSDQGEVERRVVAQLLALMDGLK-RGQ 118
Query: 785 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELA 844
V VI ATNRPD +DPA RPGRFDR + V P+E R EI +IH R + + LA
Sbjct: 119 VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLA 178
Query: 845 CLSEGCTGADISLICREAAISAIE----ENLDASRITMQHLKTAIRHVQPSEIHSYKELS 900
+ G +GAD+ + +EAA+ + + +T + A++ V PS +++
Sbjct: 179 ARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDED 238
Query: 901 AKFQRLV 907
+
Sbjct: 239 VTLDDIG 245
|
Length = 494 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 5e-46
Identities = 87/257 (33%), Positives = 141/257 (54%), Gaps = 16/257 (6%)
Query: 639 EVPKVKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
+ + +DV GQ E K + +ME +E P +R G P +L +GPPG KT+
Sbjct: 114 IISDITLDDVIGQEEAKRKCRLIMEYLENP-------ERFGDWAPKNVLFYGPPGTGKTM 166
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
MA+A+A+EA + L VK EL + VG+ + + L+ +AR AP I+F DE+D +A R
Sbjct: 167 MAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDR 226
Query: 756 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815
+ VS+ +++ LL ELDG+ + V IAATNRP+ +DPA+ RF+ +
Sbjct: 227 RYQELRGDVSE-IVNALLTELDGIKENEGVVTIAATNRPELLDPAI--RSRFEEEIEFKL 283
Query: 816 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADI-SLICREAAISAIEENLDAS 874
PN+ +R EI + +K P D ++R LA ++G +G DI + + A AI E D
Sbjct: 284 PNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE--DRE 341
Query: 875 RITMQHLKTAIRHVQPS 891
++ + ++ A++ +
Sbjct: 342 KVEREDIEKALKKERKR 358
|
Length = 368 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 8e-46
Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 12/202 (5%)
Query: 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFD 382
LG + KGVLL GPPGTGKT LA+ A ++GV F+++G + V G + ++F+
Sbjct: 82 KLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 141
Query: 383 SASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
A ++AP ++FIDE+DA+ R G G + ++ + LL MDG GV+VIAATN
Sbjct: 142 QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN 201
Query: 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMA--T 495
RPD ++PAL RPGR DR++ + +P R EIL HA ++ L +V+ ++A T
Sbjct: 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA-----KNKKLAPDVDLKAVARRT 256
Query: 496 HGFVGADLAALCNEAALVCLRR 517
GF GADLA L NEAAL+ R+
Sbjct: 257 PGFSGADLANLLNEAALLAARK 278
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-45
Identities = 85/208 (40%), Positives = 121/208 (58%), Gaps = 8/208 (3%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
+G+ P +GVLL+GPPGTGKT LA+ AH + V G E V + GE + + +VF
Sbjct: 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRL 233
Query: 384 ASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440
A ++AP+++FIDE+D+IA R D G + QR++ LLN MDG +T V VI ATNR
Sbjct: 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 293
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH--GF 498
D+++PAL RPGRLDR+IE +P Q+ I + S M L EV+ +
Sbjct: 294 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN---LSEEVDLEDFVSRPEKI 350
Query: 499 VGADLAALCNEAALVCLRRYSKIQTSSD 526
AD+AA+C EA + +R+ + D
Sbjct: 351 SAADIAAICQEAGMQAVRKNRYVILPKD 378
|
Length = 398 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-44
Identities = 102/203 (50%), Positives = 129/203 (63%), Gaps = 3/203 (1%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
LG+ P KGVLLHGPPGTGKT LAR A + G ++NGPE++S+ GESE L E+F
Sbjct: 11 KKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGESELRLRELF 69
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441
+ A + AP+++FIDE+DA+AP R E+ +R+VA LL LMDG+ R V+VI ATNRP
Sbjct: 70 EEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRP 128
Query: 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501
D ++PA RRPGR DREIE+ +P A RLEIL M + L+ T G GA
Sbjct: 129 DGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMF-LGPPGTGKTLAARTVGKSGA 187
Query: 502 DLAALCNEAALVCLRRYSKIQTS 524
DL AL EAAL LRR +
Sbjct: 188 DLGALAKEAALRELRRAIDLVGE 210
|
Length = 494 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 8e-41
Identities = 83/196 (42%), Positives = 119/196 (60%), Gaps = 4/196 (2%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
+G++P KGV+L+GPPGTGKT LA+ A+++ V G E++ + G+ + + E+F
Sbjct: 212 IGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRV 271
Query: 384 ASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440
A ++AP++VFIDE+DAI R D GGE+ QR + LLN +DG V VI ATNR
Sbjct: 272 AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR 331
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500
+S++PAL RPGR+DR+IE P + I S M + D ++E MA G
Sbjct: 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSG 390
Query: 501 ADLAALCNEAALVCLR 516
AD+ A+C EA L+ LR
Sbjct: 391 ADIKAICTEAGLLALR 406
|
Length = 438 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-38
Identities = 86/212 (40%), Positives = 123/212 (58%), Gaps = 12/212 (5%)
Query: 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFD 382
++G + KGVLL GPPGTGKT LA+ A ++ V F+++G E V G + ++F
Sbjct: 210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFK 269
Query: 383 SASQSAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
A +++P +VFIDE+DA+ R GG + ++ + LL MDG GV+VIAATN
Sbjct: 270 KAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATN 329
Query: 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMA--T 495
R D ++ AL RPGR DR+I +++P RL+IL HA + L +V +A T
Sbjct: 330 RVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHA-----RNKKLSPDVSLELIARRT 384
Query: 496 HGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
GF GADLA L NEAA++ RR T ++
Sbjct: 385 PGFSGADLANLLNEAAILTARRKKATITMKEI 416
|
Length = 638 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-37
Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 14/215 (6%)
Query: 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEV 380
+LG + KGVLL GPPGTGKT LA+ A ++GV F+++G + V G + ++
Sbjct: 175 YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 234
Query: 381 FDSASQSAPAVVFIDELDAIAPARK----DGGEELSQRMVATLLNLMDGVCRTDGVLVIA 436
F+ A ++AP ++FIDE+DA+ R G +E Q + LL MDG +GV+VIA
Sbjct: 235 FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTL-NQLLVEMDGFGGNEGVIVIA 293
Query: 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMA 494
ATNRPD ++PAL RPGR DR+I + +P R +IL H ++ L +V+ +A
Sbjct: 294 ATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVH-----AKNKPLAEDVDLKKIA 348
Query: 495 --THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
T GF GADLA L NEAAL+ RR K T D+
Sbjct: 349 RGTPGFSGADLANLLNEAALLAARRNKKEITMRDI 383
|
Length = 596 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-36
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 18/236 (7%)
Query: 319 STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALH 378
S LG + KGVL+ GPPGTGKT LA+ A ++ V FT++G + V G +
Sbjct: 175 SRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVR 234
Query: 379 EVFDSASQSAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVI 435
++F+ A ++AP ++FIDE+DA+ R GG + ++ + +L MDG +G++VI
Sbjct: 235 DMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294
Query: 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVE--YLSM 493
AATNRPD ++PAL RPGR DR++ + +P R +IL M L +++ ++
Sbjct: 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV---HMRRVPLAPDIDAAIIAR 351
Query: 494 ATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSD 549
T GF GADLA L NEAAL R ++ ++ EFE D ++ ++
Sbjct: 352 GTPGFSGADLANLVNEAALFAARGNKRVV----------SMVEFEKAKDKIMMGAE 397
|
Length = 644 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 5e-35
Identities = 70/177 (39%), Positives = 109/177 (61%), Gaps = 8/177 (4%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
K VL +GPPGTGKT +A+ A+++ V L V E++ ++ G+ + +HE+++ A ++AP
Sbjct: 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAP 211
Query: 390 AVVFIDELDAIAPARKDGGEELS---QRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+VFIDELDAIA R +EL +V LL +DG+ +GV+ IAATNRP+ ++P
Sbjct: 212 CIVFIDELDAIALDR--RYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503
A+R R + EIE +P+ +RLEIL +D+++ YL+ T G G D+
Sbjct: 270 AIR--SRFEEEIEFKLPNDEERLEILEYYAKKFPLP-VDADLRYLAAKTKGMSGRDI 323
|
Length = 368 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-29
Identities = 84/263 (31%), Positives = 130/263 (49%), Gaps = 23/263 (8%)
Query: 637 ILEV--PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF----KRIGTRPPTGILMFGPPG 690
ILE K D+GG +K W +K +F G P G+L+ G G
Sbjct: 217 ILEFYSVNEKISDIGGLDNLKD-------WLKKRSTSFSKQASNYGLPTPRGLLLVGIQG 269
Query: 691 CSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDG 750
K+L A+A+A++ L L + +LF VGESE +R + A A +P I++ DEID
Sbjct: 270 TGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEID- 328
Query: 751 LAAIRGKESDGVS-VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809
A ES G S ++RV++ + L ++ V V+A N D + +LR GRFD
Sbjct: 329 -KAFSNSESKGDSGTTNRVLATFITWLS--EKKSPVFVVATANNIDLLPLEILRKGRFDE 385
Query: 810 LLYVGPPNETDREEIFRIHLRKI-PCS-SDVNIRELACLSEGCTGADISLICREAAISAI 867
+ ++ P+ +RE+IF+IHL+K P S +I++L+ LS +GA+I EA A
Sbjct: 386 IFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAF 445
Query: 868 EENLDASRITMQHLKTAIRHVQP 890
E + T + A++ P
Sbjct: 446 YEKRE---FTTDDILLALKQFIP 465
|
Length = 489 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 23/198 (11%)
Query: 325 GLRPTKGVLLHGPPGTGKTSLARLCA-----------HDSGVNLFTVNGPEVVSQNYGES 373
GL+P KGVLL+GPPG GKT +A+ A L + GPE++++ GE+
Sbjct: 212 GLKPPKGVLLYGPPGCGKTLIAKAVANSLAARIGAEGGGKSYFL-NIKGPELLNKYVGET 270
Query: 374 EQALHEVFDSASQSA----PAVVFIDELDAIAPARKDG-GEELSQRMVATLLNLMDGVCR 428
E+ + +F A + A P +VF DE+D++ R G ++ +V LL +DGV
Sbjct: 271 ERQIRLIFQRAREKASEGRPVIVFFDEMDSLFRTRGSGVSSDVETTVVPQLLAEIDGVES 330
Query: 429 TDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV 488
D V+VI A+NR D I+PA+ RPGRLD +I I P +I L+ D +
Sbjct: 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAKYLTD------DLPL 384
Query: 489 EYLSMATHGFVGADLAAL 506
A G A AAL
Sbjct: 385 PEDLAAHDGDREATAAAL 402
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 51/173 (29%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA---SEAG 705
GQ E L EA+E P +L++GPPG KT +ARA+A G
Sbjct: 1 VGQEEAIEALREALELPPPK-------------NLLLYGPPGTGKTTLARAIANELFRPG 47
Query: 706 LNFLAVKGPELFSKWVGESEK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV 762
FL + +L V VR LF A P ++F DEID L+
Sbjct: 48 APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR--------- 98
Query: 763 SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815
+ ++ L D R NV VI ATNRP D R D + +
Sbjct: 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 8e-25
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 326 LRPTKGVLLHGPPGTGKTSLARLCAH---DSGVNLFTVNGPEVVSQNYGESEQALHEVFD 382
L P K +LL+GPPGTGKT+LAR A+ G +N +++ V
Sbjct: 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75
Query: 383 S---ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
A ++ P V+FIDE+D++ ++ L L D + V VI ATN
Sbjct: 76 LFELAEKAKPGVLFIDEIDSL-------SRGAQNALLRVLETLNDLRIDRENVRVIGATN 128
Query: 440 RPDSIEPALRRPGRLDREIEIA 461
RP + RLD I I
Sbjct: 129 RPLLGDLDRALYDRLDIRIVIP 150
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 9e-18
Identities = 47/156 (30%), Positives = 65/156 (41%), Gaps = 25/156 (16%)
Query: 679 PPTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKGPELFS--------------KWV 721
P IL+ GPPG KT +ARA+A E G + + G ++ K
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 722 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ 781
G E +R A AR P ++ DEI L D + ++ + L L L
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLL-------DAEQEALLLLLEELRLLLLLKS 113
Query: 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
N+TVI TN + PALLR RFDR + +
Sbjct: 114 EKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 4e-14
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAH---DSGVNLFTVNGPEVVSQNY-------------- 370
P + +L+ GPPG+GKT+LAR A G + ++G +++ +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTD 430
G E L A + P V+ +DE+ ++ A E+ + ++ L L+ +
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDA-----EQEALLLLLEELRLLLLLKSEK 115
Query: 431 GVLVIAATNRPDSIEPALRRPGRLDREIEI 460
+ VI TN + PAL R R DR I +
Sbjct: 116 NLTVILTTNDEKDLGPALLRR-RFDRRIVL 144
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-13
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 10/218 (4%)
Query: 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC 349
+V + IS +GGL LK S S ++ S+ GL +G+LL G GTGK+ A+
Sbjct: 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQA--SNYGLPTPRGLLLVGIQGTGKSLTAKAI 279
Query: 350 AHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELD---AIAPARKD 406
A+D + L ++ ++ GESE + ++ A +P +++IDE+D + + ++ D
Sbjct: 280 ANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD 339
Query: 407 GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPA 466
G + R++AT + + + V V+A N D + + R GR D + +PS
Sbjct: 340 SGT--TNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395
Query: 467 QRLEILHALLSGME-HSLLDSEVEYLSMATHGFVGADL 503
+R +I L S +++ LS ++ F GA++
Sbjct: 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEI 433
|
Length = 489 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 37/145 (25%)
Query: 331 GVLLHGPPGTGKTSLA-RLCAHDSGVNLFTVNGP------EVVSQ-NYGESEQALHE-VF 381
GVLL GPPGTGK+ LA RL A S +F V ++ + N + +
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD------------GVCRT 429
A++ + +DE++ P ++ +LL+L+D
Sbjct: 61 VRAAREG-EIAVLDEINRANPD-----------VLNSLLSLLDERRLLLPEGGELVKAAP 108
Query: 430 DGVLVIAATNRPD----SIEPALRR 450
DG +IA N D + PALR
Sbjct: 109 DGFRLIATMNPLDRGLNELSPALRS 133
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVL---LHGPPGTGKTSLAR 347
VE+++S++ GL + A++K+I + GL+ +K VL G PGTGKT++AR
Sbjct: 1 VERELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVAR 60
Query: 348 LCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAI 400
+ + V +L V ++V + G + Q EV A V+FIDE A
Sbjct: 61 ILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALG---GVLFIDE--AY 115
Query: 401 APAR---KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR-RPGRLDR 456
+ AR KD G+E + TL+ M+ R + VL++A D ++ L PG L
Sbjct: 116 SLARGGEKDFGKE----AIDTLVKGMEDN-RNEFVLILAGY--SDEMDYFLSLNPG-LRS 167
Query: 457 EIEIAVPSPAQRLEILHALLSGM 479
I++ P +E L + M
Sbjct: 168 RFPISIDFPDYTVEELMEIAERM 190
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group [Cellular processes, Sporulation and germination]. Length = 261 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 329 TKGVLLHGPPGTGKTSLARLCAH---DSGV----NLFTVNGPEVVSQNYGESEQALHEVF 381
+ +L GPPGTGKT++AR+ A GV + V+ +++ Q GESE +E+
Sbjct: 312 SNHMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNEII 371
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441
DSA V+F+DE + + + TLL M+ D ++VI A R
Sbjct: 372 DSA---LGGVLFLDEAYTLVETGYGQKDPFGLEAIDTLLARMEN--DRDRLVVIGAGYRK 426
Query: 442 D-----SIEPALRRPGRLDREIEIAVPSPAQRLEILH 473
D + LR R R IE SP + +EI
Sbjct: 427 DLDKFLEVNEGLRS--RFTRVIEFPSYSPDELVEIAR 461
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 24/80 (30%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPA- 390
VLL GPPG GKT+LA + A++ GVNL +GP + A
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGP----------------ALEKPGDLAAIL 98
Query: 391 -------VVFIDELDAIAPA 403
V+FIDE+ ++PA
Sbjct: 99 TNLEEGDVLFIDEIHRLSPA 118
|
Length = 332 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 308 LKDIIISSSVKSTLSSLGLRPTKG-------VLLHGPPGTGKTSLARLCAHDSGVNLFTV 360
L + I VK L L + K +LL+GPPG GKT+LA + A++ GVNL
Sbjct: 3 LAEFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKIT 61
Query: 361 NGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403
+GP + G+ L + V+FIDE+ ++PA
Sbjct: 62 SGPALEKP--GDLAAIL------TNLEEGDVLFIDEIHRLSPA 96
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE 703
+ GQ +VK QL +E + QEA +L++GPPG KT +A +A+E
Sbjct: 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEA--------LDHLLLYGPPGLGKTTLAHIIANE 53
Query: 704 AGLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN--APSIIFFDEIDGLA 752
G+N GP L EK A N ++F DEI L+
Sbjct: 54 MGVNLKITSGPAL--------EKP--GDLAAILTNLEEGDVLFIDEIHRLS 94
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 1e-06
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
++L GPPGTGKT+LAR+ A + ++ V+ + + + E S +
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEALSA---VTSGVKDLREVIEEARQRRSAGRRTI 95
Query: 392 VFIDE 396
+FIDE
Sbjct: 96 LFIDE 100
|
Length = 413 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-06
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363
VLL+GPPG GKT+LA + A++ GVN+ +GP
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGP 85
|
Length = 328 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 646 EDVGGQREVKTQLME-AVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA 704
DV G + K QL E W + +P +L++GPPG KT +A A+A++
Sbjct: 14 SDVVGNEKAKEQLREWIESWLKG----------KPKKALLLYGPPGVGKTSLAHALANDY 63
Query: 705 G-----LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 751
G LN + ++ + GE+ SLF R +I DE+DG+
Sbjct: 64 GWEVIELNASDQRTADVIERVAGEAAT-SGSLFGARR----KLILLDEVDGI 110
|
Length = 482 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 308 LKDIIISSSVKSTLSS-----LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362
L D++ + K L L +P K +LL+GPPG GKTSLA A+D G + +N
Sbjct: 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72
Query: 363 PEVVSQNYGESEQALHEVFDSASQSAP------AVVFIDELDAIAPARKDGG 408
+ + + V A+ S ++ +DE+D I +D G
Sbjct: 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHG-NEDRG 117
|
Length = 482 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 32/132 (24%)
Query: 619 VDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR 678
+ K +RP + E I GQ +VK QL ++ +K EA +
Sbjct: 11 EEEMKIERSLRPKTLDEFI------------GQEKVKEQLQIFIKAAKKRGEALDHV--- 55
Query: 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN 738
L+FGPPG KT +A +A+E G+N GP L EK A N
Sbjct: 56 -----LLFGPPGLGKTTLAHIIANELGVNLKITSGPAL--------EKP--GDLAAILTN 100
Query: 739 --APSIIFFDEI 748
++F DEI
Sbjct: 101 LEEGDVLFIDEI 112
|
Length = 332 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363
VLL+GPPG GKT+LA + A++ GVN+ +GP
Sbjct: 53 VLLYGPPGLGKTTLANIIANEMGVNIRITSGP 84
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
| >gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 25/188 (13%)
Query: 308 LKDIIISSSVKSTLSSL---GLRPTKGVLLHGP-PGTGKTSLARLCAHDSGVNLFTVNGP 363
+ + I+ ++ K T S+ G P +LLH P PGTGKT++A+ ++ G + VNG
Sbjct: 20 IDECILPAADKETFKSIVKKGRIPN--MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77
Query: 364 EVVSQNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422
L + S + V+ IDE D + A +QR + + +
Sbjct: 78 ---DCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD-------AQRHLRSFMEA 127
Query: 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS 482
C I N + I LR R R I+ VP+ +++E++ ++ +
Sbjct: 128 YSKNCS-----FIITANNKNGIIEPLR--SRC-RVIDFGVPTKEEQIEMMKQMIVRCKGI 179
Query: 483 LLDSEVEY 490
L VE
Sbjct: 180 LEAEGVEV 187
|
Length = 316 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 41/175 (23%), Positives = 58/175 (33%), Gaps = 41/175 (23%)
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFLAV------KGPELFSKWVGES-EKAVRSLFAKA 735
+L+ GPPG KTL+ARA+A GL F+ + +L + +
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105
Query: 736 R---ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN-------- 784
A I+ DEI+ R V + LL L+ V
Sbjct: 106 GPLFAAVRVILLLDEIN-----RAPP--------EVQNALLEALEERQVTVPGLTTIRLP 152
Query: 785 --VTVIAATNRPDKID-----PALLRPGRFDRLLYVG-PPNETDREEIFRIHLRK 831
VIA N + ALL RF +YV P +E + I
Sbjct: 153 PPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGV 205
|
Length = 329 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 44/214 (20%), Positives = 72/214 (33%), Gaps = 45/214 (21%)
Query: 304 EYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN-- 361
+ K ++ V L+ L L VLL GPPG GKT LAR A G+ +
Sbjct: 19 RSELEKVVVGDEEVI-ELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77
Query: 362 ---------GPEVVSQNYGESEQALHEVFDSA--SQSAPAVVFIDELDAIAPARKDGGEE 410
G + E + F + ++ +DE++ P
Sbjct: 78 PDLLPSDLLGTYAYAALLLEPGE---FRFVPGPLFAAVRVILLLDEINRAPP-------- 126
Query: 411 LSQRMVATLLNLMDGVCRT----------DGVLVIAATNRPDS-----IEPALRRPGRLD 455
+ LL ++ T +VIA N + + AL R
Sbjct: 127 ---EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181
Query: 456 REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVE 489
I + P + I+ A + G++ L+S V+
Sbjct: 182 LRIYVDYPDSEEEERIILARVGGVDELDLESLVK 215
|
Length = 329 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 334 LHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPA--- 390
L GPPGTGKT+LARL A + ++ V S G + L E+ + A ++
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEALSA--VTS---GVKD--LREIIEEARKNRLLGRR 105
Query: 391 -VVFIDE 396
++F+DE
Sbjct: 106 TILFLDE 112
|
Length = 436 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
PK ++ GQ +VK L +E +K EA + L++GPPG KT +A +
Sbjct: 21 PK-SLDEFIGQEKVKENLKIFIEAAKKRGEALDHV--------LLYGPPGLGKTTLANII 71
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKA--VRSLFAKARANAPSIIFFDEIDGLA 752
A+E G+N GP L EK + ++ ++F DEI L+
Sbjct: 72 ANEMGVNIRITSGPAL--------EKPGDLAAILTNLEEG--DVLFIDEIHRLS 115
|
Length = 328 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
P+ + ++ GQ +VK L +E +K EA +L++GPPG KT +A +
Sbjct: 20 PR-RLDEYIGQEKVKENLKIFIEAAKKRGEA--------LDHVLLYGPPGLGKTTLANII 70
Query: 701 ASEAGLNFLAVKGPEL 716
A+E G+N GP L
Sbjct: 71 ANEMGVNIRITSGPAL 86
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 33/147 (22%)
Query: 682 GILMFGPPGCSKTLMARAVASE-AGLNFLAVKGP------ELFSKW---VGESEKAVRSL 731
G+L+ GPPG K+ +A +A+ + V+ +L + G + L
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60
Query: 732 FAKARANAPSIIFFDEIDGLAAIRGKESDGVSV-----SDRVMSQLLVELDGL--HQRVN 784
AR I DEI+ D ++ +R + LL E L
Sbjct: 61 VRAAR--EGEIAVLDEINRA------NPDVLNSLLSLLDERRL--LLPEGGELVKAAPDG 110
Query: 785 VTVIAATNRPDK----IDPALLRPGRF 807
+IA N D+ + PAL RF
Sbjct: 111 FRLIATMNPLDRGLNELSPALRS--RF 135
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 46/234 (19%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV---------------NGPEVVSQ 368
L L P++G+L+ G GTG++ L + A +S V TV + ++
Sbjct: 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDS 1684
Query: 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM------------- 415
+ + + D+ + + +D + I EL++ M
Sbjct: 1685 DDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDL 1744
Query: 416 ---------VATLLNLMDGVCR---TDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVP 463
+ L+N + C T +LVIA+T+ P ++PAL P +L+ I+I
Sbjct: 1745 NVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRL 1804
Query: 464 SPAQRLEILHALLS----GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513
Q+ + L +E + T G DL AL NEA +
Sbjct: 1805 LIPQQRKHFFTLSYTRGFHLEKKM--FHTNGFGSITMGSNARDLVALTNEALSI 1856
|
Length = 2281 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-04
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 18/73 (24%)
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFL---AVKGPELFSKWVGESEKAVRSLFAKARANA 739
IL +GPPG KT +AR +A F AV K +R + +AR
Sbjct: 40 IL-WGPPGTGKTTLARIIAGATDAPFEALSAV----TSGV------KDLREVIEEARQRR 88
Query: 740 PS----IIFFDEI 748
+ I+F DEI
Sbjct: 89 SAGRRTILFIDEI 101
|
Length = 413 |
| >gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
+ L+GPPG GK++LA+ A +L V S+N + +D + V
Sbjct: 1 IWLYGPPGCGKSTLAKYLARALLKHLGLPKKDSVYSRN------PDDDFWDGYTG--QPV 52
Query: 392 VFIDELDAIAPARKDGGEELSQ--RMVAT---LLNLMDGV----CRTDGVLVIAATNR 440
V ID+ DG + ++ R+V++ M + VI +N
Sbjct: 53 VIIDDF----GQNPDGPSDEAELIRLVSSTPYPPP-MAALEEKGTPFTSKFVIVTSNF 105
|
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 35/147 (23%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 315 SSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE 374
+ L VLL GP GTGKTSL R V + E
Sbjct: 10 ERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAF--S 67
Query: 375 QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434
QAL E+ + A + + +A + E L L+ L++ + LV
Sbjct: 68 QALRELLRQLLRELAAELLLLREALLAALGAELIEGLQ-----DLVELLERLLARARPLV 122
Query: 435 I-------AATNRPDSIEPALRRPGRL 454
+ A D + LRR RL
Sbjct: 123 LVLDDLQWADEESLDLLAALLRRLERL 149
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
| >gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 17/78 (21%)
Query: 330 KGVLLHGPPGTGKTSLA-----RLCAHDSGVNLFTVNGPEVVSQ-----NYGESEQALHE 379
+ ++L GPPG GKT LA L G+++ + P+++S+ + G E+ L
Sbjct: 106 ENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAFDEGRLEEKLLR 163
Query: 380 VFDSASQSAPAVVFIDEL 397
++ ID++
Sbjct: 164 ELKKVD-----LLIIDDI 176
|
Length = 254 |
| >gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 35/172 (20%)
Query: 326 LRPTK-GVLLHGPPGTGKTSLA-----RLCAHD-----SGVNLFTVNGPEVVS-QNY-GE 372
R TK +L G PG GKT++ R+ D +++++ +V+ Y GE
Sbjct: 187 SRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246
Query: 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN--LMDGVCRTD 430
E+ L V +S ++FIDE+ I A G E A LL L G R
Sbjct: 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGA---GATEGGAMDAANLLKPALARGELR-- 301
Query: 431 GVLVIAATN----RPDSIE--PAL-RRPGRLDREIEIAVPSPAQRLEILHAL 475
I AT R IE AL RR +++ + PS + IL L
Sbjct: 302 ---CIGATTLDEYRKY-IEKDAALERRF----QKVLVDEPSVEDTIAILRGL 345
|
Length = 786 |
| >gnl|CDD|225822 COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 53/206 (25%), Positives = 79/206 (38%), Gaps = 60/206 (29%)
Query: 683 ILMFGPPGCSKTLMARAV--ASEAGLNFLAVK---------GPELFS----KWVGESEKA 727
+L+ G G K ++ARA+ SEA F+AV ELF + G K
Sbjct: 339 VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKG 398
Query: 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL----LVELDGLHQRV 783
+ +A +F DEI + +++ R++ L + L G +V
Sbjct: 399 YKGKLEQADG---GTLFLDEIGDMP---------LALQSRLLRVLQEGVVTPLGGTRIKV 446
Query: 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVG--------PP--NETDREE-IFRIHLRK- 831
++ VIAAT+R L+ GRF LY PP +DR + RI R+
Sbjct: 447 DIRVIAATHRDLA---QLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN 503
Query: 832 ---IPCSSDV-----------NIREL 843
+ D NIREL
Sbjct: 504 DWRLQLDDDALARLLAYRWPGNIREL 529
|
Length = 606 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARA 737
+ IL +GPPG KT +AR +A F A+ V K +R + +AR
Sbjct: 47 HLHSMIL-WGPPGTGKTTLARLIAGTTNAAFEALSA-------VTSGVKDLREIIEEARK 98
Query: 738 NAPS----IIFFDEI 748
N I+F DEI
Sbjct: 99 NRLLGRRTILFLDEI 113
|
Length = 436 |
| >gnl|CDD|200217 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 280 AQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLR---PTKGVLLHG 336
A+ E + ++Q +L GL +++I V+ LGL PT + G
Sbjct: 6 AEYEGSGITEVLDQLDRELIGLKPVKTRIREIAALLLVERARQKLGLASAAPTLHMSFTG 65
Query: 337 PPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
PGTGKT++A A H G +L +V ++V Q G + EV A
Sbjct: 66 NPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMG--- 122
Query: 390 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TNRPDSI---E 445
V+FIDE A R D + Q + LL +M+ R D V+++A +R DS
Sbjct: 123 GVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMENN-RDDLVVILAGYKDRMDSFFESN 179
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL 483
P R+ I+ S + LEI +L ++
Sbjct: 180 PGFS--SRVAHHIDFPDYSDEELLEIAGLMLDEQQYRF 215
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. Length = 284 |
| >gnl|CDD|234203 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 31/167 (18%)
Query: 334 LHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVF 393
L G G+GK+ L + G + E QA EV + Q +V
Sbjct: 43 LWGESGSGKSHLLQAACAA-----AEERGKSAIYLPLAELAQADPEVLEGLEQ--ADLVC 95
Query: 394 IDELDAIAPARKDGGEELSQRMVATLLN-LMDGVCRTDGVLVIAATNRPDSIEPALRRP- 451
+D+++AIA + Q + L N + + R L+IA P + LR P
Sbjct: 96 LDDVEAIAGQPEW------QEALFHLYNRVREAGGR----LLIAGRAAPAQL--PLRLPD 143
Query: 452 --GRLDREIEIAVPSP--AQRLEIL--HALLSGMEHSLLDSEV-EYL 491
RL + +P +++ L A G++ L EV +YL
Sbjct: 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ---LPDEVADYL 187
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP [DNA metabolism, DNA replication, recombination, and repair]. Length = 226 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 678 RPPTGILMFGPPGCSKTLMARAVASE--AGLNFLAVKG------PELFSKWVGESEKAVR 729
RP L GP G KT +A+A+A L S+ +G V
Sbjct: 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVG 60
Query: 730 -----SLFAKARANAPSIIFFDEID 749
L R SI+ DEI+
Sbjct: 61 YEEGGQLTEAVRRKPYSIVLIDEIE 85
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 683 ILMFGPPGCSKTLMARAVASE-AGLNFLA------VKGPELFSKWVGESEKAVRSLFAKA 735
+L GPPG KT +AR VA GL L V +L +++GESE + A
Sbjct: 315 MLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNEIIDSA 374
Query: 736 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795
++F DE L + D + + LL ++ + R + VI A R D
Sbjct: 375 LG---GVLFLDEAYTLVETGYGQKDPFGLE--AIDTLLARME--NDRDRLVVIGAGYRKD 427
Query: 796 KIDPAL-----LRPGRFDRLL 811
+D L LR RF R++
Sbjct: 428 -LDKFLEVNEGLR-SRFTRVI 446
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 957 | |||
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 100.0 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 100.0 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.98 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.98 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.98 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.97 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.97 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.97 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.97 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.97 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.97 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.97 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.97 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.97 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.97 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.96 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.96 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.9 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.89 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.88 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.88 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.87 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.86 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.86 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.86 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.86 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.85 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.85 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.85 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.84 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.83 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.83 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.82 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.82 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.82 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.81 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.81 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.81 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.77 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.77 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.76 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.75 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.74 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.73 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.73 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.73 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.72 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.72 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.71 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 99.71 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.71 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.71 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.68 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.68 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.68 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.67 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.67 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.64 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.64 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.64 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.63 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.63 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.63 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.63 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.63 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.62 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.62 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.62 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.62 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.61 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.58 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.58 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.57 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.57 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.56 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.56 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.55 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.54 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.53 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.53 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.53 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.52 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.52 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.51 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.51 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.51 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.51 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.51 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.5 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.5 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.5 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.5 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.5 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.49 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.49 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.49 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.48 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.48 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.48 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.48 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.47 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.47 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.47 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.47 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.46 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.46 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.43 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.43 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.43 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.42 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.42 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.42 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.41 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.41 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.41 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.41 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.41 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.41 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.41 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.41 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 99.41 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.41 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.4 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.4 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.4 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.4 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.4 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.39 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.39 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.39 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.39 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.39 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.39 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.37 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.37 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.37 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.37 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.37 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.36 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.36 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.35 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.35 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.35 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.35 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.34 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.34 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.33 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.33 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.33 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.33 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.32 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.32 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.32 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.32 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.31 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.31 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.31 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.31 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.31 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.3 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.3 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.3 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.29 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.28 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.28 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.27 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.27 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.27 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.26 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.26 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.26 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.26 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.26 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.25 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.25 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.24 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.24 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.24 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.24 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.24 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.24 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.23 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.23 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.23 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.23 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.22 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.22 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.21 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.21 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.2 | |
| PHA02244 | 383 | ATPase-like protein | 99.2 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.2 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.2 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.2 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.18 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.18 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.17 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.16 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.15 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.15 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.14 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.14 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.14 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 99.14 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.14 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.14 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.13 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 99.13 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 99.13 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.13 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.12 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.12 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.11 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.11 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.11 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.1 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.1 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.09 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.09 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.07 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.07 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.07 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.07 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.07 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.07 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.06 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.06 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.05 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.05 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.05 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.04 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.04 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.04 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.03 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.03 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.02 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.02 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.02 | |
| PHA02244 | 383 | ATPase-like protein | 99.02 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.01 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.0 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.0 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 98.99 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.99 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 98.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 98.98 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.98 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.97 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 98.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 98.96 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.96 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 98.96 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 98.96 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 98.95 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 98.94 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 98.94 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 98.93 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.92 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 98.92 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.92 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 98.92 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 98.9 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.9 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.9 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 98.89 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 98.89 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 98.89 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.89 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.88 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 98.88 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 98.87 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 98.86 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 98.86 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.86 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 98.86 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.85 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 98.85 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 98.84 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.84 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 98.84 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.83 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.83 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.82 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 98.81 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 98.81 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.8 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.8 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.8 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 98.79 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 98.78 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.78 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.78 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.78 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 98.77 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.76 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 98.76 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 98.76 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.76 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 98.75 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.74 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 98.74 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 98.74 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.73 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.73 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 98.72 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 98.71 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.71 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.7 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 98.69 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.69 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 98.69 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.69 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 98.68 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.68 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.68 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 98.67 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 98.67 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 98.66 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.66 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 98.66 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.66 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.64 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.64 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 98.64 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.63 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.62 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.62 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.62 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 98.62 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.62 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.62 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.61 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 98.6 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.6 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.59 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.58 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.58 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.58 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 98.57 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.55 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.54 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 98.54 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.53 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.51 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.49 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.48 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.47 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 98.47 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 98.46 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.46 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.46 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.44 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.44 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.43 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.42 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.41 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.4 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.38 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.38 | |
| PRK08181 | 269 | transposase; Validated | 98.38 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.36 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.35 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.35 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.34 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.34 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.33 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.32 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 98.31 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 98.31 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.31 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.31 | |
| PRK06526 | 254 | transposase; Provisional | 98.29 | |
| PRK08181 | 269 | transposase; Validated | 98.29 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 98.29 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.28 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.28 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 98.27 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.26 | |
| PRK06526 | 254 | transposase; Provisional | 98.26 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.26 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.25 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.25 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.25 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.24 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.23 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.23 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.22 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 98.22 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 98.22 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.21 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.21 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.2 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.2 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 98.2 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 98.2 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.19 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 98.18 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 98.18 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.18 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 98.17 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 98.17 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.17 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 98.17 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 98.16 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.15 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 98.15 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 98.15 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 98.15 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.15 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 98.15 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 98.14 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.14 |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-109 Score=922.43 Aligned_cols=681 Identities=44% Similarity=0.643 Sum_probs=555.7
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCccccccccccCcCCCcccchhhhhhhcchhHHHHHHHHHHhhccCCcccCCCEEEE
Q 002169 131 DSSPKTPMYQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNLVAV 210 (957)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (957)
.+++|+ +..++.++ .++-+|+.+|++.-- .+.++ ++.++..|+.+++|++.|.++.
T Consensus 85 kst~~~--~~~~~~s~--~~~~~~~~~ds~~e~--~~~k~----~~~e~~sn~~~kkl~s~~~~r~-------------- 140 (802)
T KOG0733|consen 85 KSTLKD--NLQKFASP--KVSKSPIIEDSVAER--QSEKN----DIIEVDSNEANKKLLSLWAKRA-------------- 140 (802)
T ss_pred cccchh--hHHHhcCC--ccccCccccchHHHH--hcccC----cceeecchHHHHHHHHHHHhhc--------------
Confidence 566666 44455533 556778888866411 11111 7889999999999999997211
Q ss_pred eecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCcccccccccCCCCCchhhhhhccccc
Q 002169 211 PMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQAT 290 (957)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (957)
.+. .++....+..+.+.+.|++.+.......... +..-....+.
T Consensus 141 --------------~~~-------------~~d~~~k~~~~~~~~~~k~~l~~~~a~~~~r---------~~~~~~~~~~ 184 (802)
T KOG0733|consen 141 --------------EKR-------------TEDSKPKNHAEMIVPGTKVSLHLSLARGILR---------QFVEGLEFPE 184 (802)
T ss_pred --------------ccC-------------CccccccccccccCcchhhhhhhhhcchhhh---------hhhcccCCCC
Confidence 110 0112223356777777777754321110000 0000001111
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
...+|.+|||++.+...|.+++.....++.|..+|+.|++|||||||||||||+||+++|++++.+|+.|+++++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 24578999999999999999999965559999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC----CCeEEEEecCCCCCchh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT----DGVLVIAATNRPDSIEP 446 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~----~~v~vI~ttN~~~~ld~ 446 (957)
|++|++++++|+.|....|||+||||||++.++|+..+.++++|++++|++.||++... ..|+||++||+||.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 99999999999999999999999999999999999999999999999999999999554 56999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccccc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 526 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~ 526 (957)
+|||+||||++|.+..|+..+|.+||+.+++++.+. .+.++..||..|+||+|+||.+||.+|+..|++|.......-.
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999888 4888999999999999999999999999999999765333100
Q ss_pred ccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCc
Q 002169 527 VLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMF 606 (957)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (957)
..+-..+.++...+..++ |+... ++--...+.+...+...+.+..+. .
T Consensus 424 -----~~~~~~ed~~~~~~~~d~-----------------S~i~~--~~~~~~~~~ld~v~~~~i~~~~d~--------~ 471 (802)
T KOG0733|consen 424 -----TKVPISEDSSNKDAEEDQ-----------------SSIKI--TSNAERPLELDRVVQDAILNNPDP--------L 471 (802)
T ss_pred -----ccCCccccccCCCccchh-----------------hhhhc--CCcccccccHHHHHHHHHHhCCCC--------c
Confidence 000000111101100000 00000 000001222223333333332222 3
Q ss_pred cccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceee
Q 002169 607 MSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMF 686 (957)
Q Consensus 607 ~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~ 686 (957)
..|....+.+.++||..|+..++|++.||++..+|+|+|+||+++++++.+|..+|.||.++++.|+.+|+..|.|+||+
T Consensus 472 S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~ 551 (802)
T KOG0733|consen 472 SKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLC 551 (802)
T ss_pred ChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEe
Confidence 35777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH
Q 002169 687 GPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD 766 (957)
Q Consensus 687 GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~ 766 (957)
||||||||+||||+|++.+.+||.|++++|+++|||++++++|.+|.+|+..+||||||||+|+|.+.|+..+ ..+..
T Consensus 552 GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~ 629 (802)
T KOG0733|consen 552 GPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSS 629 (802)
T ss_pred CCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997664 57889
Q ss_pred HHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHh--cCCCCCcccHHHHH
Q 002169 767 RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELA 844 (957)
Q Consensus 767 ~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~--~~~~~~~~~l~~la 844 (957)
|++||||++|||+..+.+|.||+|||+|+.||||++||||||+.+|+++|+.++|..||+.+++ +.++..|++++++|
T Consensus 630 RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 630 RVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHcc--CCcHHHHHHHHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 002169 845 CLSE--GCTGADISLICREAAISAIEENLD--------------ASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRL 906 (957)
Q Consensus 845 ~~t~--g~sg~dl~~l~~eA~~~a~~~~~~--------------~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~ 906 (957)
+.+. ||||+||..+|++|.+.|+++.+. ...+|+.||++|+++++|+..+.-++..+.+++.
T Consensus 710 ~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~ 787 (802)
T KOG0733|consen 710 RNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKS 787 (802)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhh
Confidence 9887 999999999999999999998541 1247888999999999999555444444444444
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-95 Score=829.24 Aligned_cols=502 Identities=51% Similarity=0.899 Sum_probs=480.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhH
Q 002169 296 SKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE 374 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e 374 (957)
+++||+..+...+++++++++.+ ..+..+|+++++++|+|||||||||.+++++|++.+++++.+++++++.++.||++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 68999999999999999999988 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCC
Q 002169 375 QALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGR 453 (957)
Q Consensus 375 ~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gR 453 (957)
+.+|..|+.|...+ |++|||||+|++++++..... .+.|+..+|+++||+.....+++||++||+|+.||+++|| ||
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CC
Confidence 99999999999999 999999999999999876655 7899999999999999888999999999999999999999 99
Q ss_pred cceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 002169 454 LDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGT 533 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~ 533 (957)
||++++|+.|+..+|.+|++.+++.++.. ++.+++.+|..++||+|+|+.++|++|++.++|+
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------------- 404 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------------- 404 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------------
Confidence 99999999999999999999999999987 8899999999999999999999999999888765
Q ss_pred cccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCcccccccc
Q 002169 534 LFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCA 613 (957)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 613 (957)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChh
Q 002169 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSK 693 (957)
Q Consensus 614 ~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGK 693 (957)
++++|..++..++|+++|+..+++|+++|+||+|++++|++|++.+.||++|++.|.++|+.||+||||||||||||
T Consensus 405 ---~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~K 481 (693)
T KOG0730|consen 405 ---TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGK 481 (693)
T ss_pred ---hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcch
Confidence 23578889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 694 TLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 694 TtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
|++|||+|++++.+|+.|++++++++|+|++|+.+|.+|++|++.+||||||||||+++..|+.. +.++.+|++++||
T Consensus 482 T~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 482 TLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLL 559 (693)
T ss_pred HHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999743 3389999999999
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHH
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~ 853 (957)
++|||+....+|+||+|||+|+.||+||+||||||++||||+||.+.|.+||+.+++++++.+++++.+||..|+||||+
T Consensus 560 tEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred HHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC----chHHHHHHHH
Q 002169 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS----EIHSYKELSA 901 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~----~~~~y~~~~~ 901 (957)
||.++|++|+..|+++.++...|+.+||++|++.++++ .++.|+.+.+
T Consensus 640 el~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~ 691 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFAA 691 (693)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998 5556666543
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=755.76 Aligned_cols=604 Identities=47% Similarity=0.792 Sum_probs=535.6
Q ss_pred HHHHHHHhhccCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCccc
Q 002169 188 LLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNA 267 (957)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~ 267 (957)
.....++.++.++++..|+.|.+.+.+....|.|..+.|. +.+.+...|.+.+......
T Consensus 107 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~---------------------~~~~~~~~t~~~~~~~~~~ 165 (733)
T TIGR01243 107 DFVDYVKEFLLGKPISKGETVIVPVLEGALPFVVVSTQPA---------------------GFVYVTEATEVEIREKPVR 165 (733)
T ss_pred chHHHHHHHHcCCCCCCCCEEEecccCcceeEEEEecCCC---------------------CcEEECCCceEEecCCccc
Confidence 4456778899999999999999999888888998887774 4677888888886432110
Q ss_pred ccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHH
Q 002169 268 VSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLA 346 (957)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLa 346 (957)
. . ........+|++|+|++.+++.|++++.+++.+ +.+..+++.+++++|||||||||||++|
T Consensus 166 ~------~----------~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 166 E------E----------IERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred c------c----------cccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 0 0 000123467899999999999999999999877 7788999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 347 RLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 347 ralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
+++|++++.+++.++++++.+.+.|+.+..++.+|+.+....|+||||||+|.++++++...++.+.+++.+|+.+|+++
T Consensus 230 raia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 230 KAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred HHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999887766777889999999999999
Q ss_pred ccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHH
Q 002169 427 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506 (957)
Q Consensus 427 ~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l 506 (957)
...+.++||++||+++.+|++++|+|||++.+.++.|+.++|.+|++.+.+.+.+. .+.+++.++..++||+++|+..+
T Consensus 310 ~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 310 KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHH
Confidence 88888999999999999999999999999999999999999999999988887654 56678999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhc
Q 002169 507 CNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGT 586 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (957)
|++|++.+++|..........
T Consensus 389 ~~~a~~~al~r~~~~~~~~~~----------------------------------------------------------- 409 (733)
T TIGR01243 389 AKEAAMAALRRFIREGKINFE----------------------------------------------------------- 409 (733)
T ss_pred HHHHHHHHHHHHhhccccccc-----------------------------------------------------------
Confidence 999999999886431110000
Q ss_pred HHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchh
Q 002169 587 VSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQ 666 (957)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~ 666 (957)
...++.+......++.+||..++..+.|+.+++...+.|.++|++|+|++.+|+.|.+.+.||+
T Consensus 410 ----------------~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~ 473 (733)
T TIGR01243 410 ----------------AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPL 473 (733)
T ss_pred ----------------cccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhh
Confidence 0001122334456889999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEe
Q 002169 667 KHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD 746 (957)
Q Consensus 667 ~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiD 746 (957)
++++.+++++.++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..|+..+|||||||
T Consensus 474 ~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiD 553 (733)
T TIGR01243 474 KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFD 553 (733)
T ss_pred hCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHH
Q 002169 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFR 826 (957)
Q Consensus 747 Eid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~ 826 (957)
|+|++++.|+... ......+++++||.+|+++....+++||+|||+++.||++++||||||+.|++++|+.++|.+||+
T Consensus 554 Eid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 554 EIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred ChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999998876442 235678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC----------------CCCCCHHHHHHHHHhhCC
Q 002169 827 IHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD----------------ASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 827 ~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~----------------~~~It~~d~~~al~~~~p 890 (957)
.+.++.++..++++..+|..|+||+|+||.++|++|++.|+++... ...|+.+||.+|+++++|
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999986421 236999999999999999
Q ss_pred C----chHHHHHHHHHHHH
Q 002169 891 S----EIHSYKELSAKFQR 905 (957)
Q Consensus 891 ~----~~~~y~~~~~~~~~ 905 (957)
+ ++..|++|.+.|.+
T Consensus 713 s~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 713 SVSKEDMLRYERLAKELKR 731 (733)
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9 55689998888753
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=676.74 Aligned_cols=603 Identities=34% Similarity=0.551 Sum_probs=489.9
Q ss_pred HHHHHHHHHhhcc-CCcccCCCEEEEeecCee------------------eEEEEEeecCCCCcCccCCCCccccccccC
Q 002169 186 IKLLQTCAASWLY-SRSLLCGNLVAVPMLSEI------------------SIFLVIGANKLPADLTNERSQPQVTESMDH 246 (957)
Q Consensus 186 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (957)
..++.+-+++++. .|.+..||.+.|++.+.+ +.|.|.++++.
T Consensus 303 ~~~~~~~l~~~f~t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~------------------- 363 (953)
T KOG0736|consen 303 AGNIDVVLKKHFKTPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPG------------------- 363 (953)
T ss_pred hhHHHHHHHHHhCcceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCC-------------------
Confidence 4555666666665 699999999999988653 34455555442
Q ss_pred CCCcEEEcCC-ceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcC
Q 002169 247 ESNAFVINHE-TKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLG 325 (957)
Q Consensus 247 ~~~~~~i~~~-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~ 325 (957)
.+..|+|+++ |++...+..+. . .+..+++...... +-..-+.+..+-.+..+....+.... .+
T Consensus 364 ~~~~~~i~~~~T~lv~~~~~ss---~-~~~lps~~~~l~n---------~~~~~~~~~~~~~l~~vl~p~~~~s~---~~ 427 (953)
T KOG0736|consen 364 NESAYIIDTNHTSLVLVGATSS---R-VPLLPSSLSTLWN---------SLSPPGLEAKVLELVAVLSPQKQPSG---AL 427 (953)
T ss_pred ccceEEEcCCCceEEEcccccc---C-CcCCChhhHHHhc---------cCCCccchHHHHHHHHHhCcccCcch---hc
Confidence 1245777776 99998765542 2 1222222222211 12234555555556666555443322 34
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
+.-...+||+|+||||||++++++|.++|.++++++|.++.....+..+.++...|+.|+...|+|||+-++|.+...++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999985544
Q ss_pred CCCchHHHHHHHHHHHHhh---ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCC
Q 002169 406 DGGEELSQRMVATLLNLMD---GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS 482 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld---~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~ 482 (957)
. ..+.++...+..++. ......+++||++++..+.+++.+++ -|-.+|.++.|++++|.+||++++....+.
T Consensus 508 g---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 508 G---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred C---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 4 234455444444443 23456789999999999999999998 666689999999999999999999888766
Q ss_pred CChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccc
Q 002169 483 LLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCL 562 (957)
Q Consensus 483 l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 562 (957)
.+..+..++.++.||+.+|+.++...+...+..|.....- ++.+.
T Consensus 583 -~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l---------------------------~g~~~------- 627 (953)
T KOG0736|consen 583 -QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGL---------------------------AGGLQ------- 627 (953)
T ss_pred -hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcc---------------------------cccch-------
Confidence 7788899999999999999999988775555444322110 00000
Q ss_pred cCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhh-hhHHhhcC
Q 002169 563 DSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAM-REVILEVP 641 (957)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~-~~~~~e~p 641 (957)
+..+..+ ......++++||.+++...+.+.. ......+|
T Consensus 628 --------------------------~~~~~~~--------------~~~~~~l~~edf~kals~~~~~fs~aiGAPKIP 667 (953)
T KOG0736|consen 628 --------------------------EEDEGEL--------------CAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIP 667 (953)
T ss_pred --------------------------hcccccc--------------ccccceecHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence 0000000 112356889999999988876643 34467899
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 721 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~v 721 (957)
+|+|+||||++++|.+|.+.|..|++|+++|.. |+++..|||||||||||||++|||+|.++..+|++|++++++++|+
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 999999999999999999999999999999986 8899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEEecCCCCCCCh
Q 002169 722 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 722 g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~aTN~~~~id~ 799 (957)
|++|+++|++|++||..+||||||||+|++++.|+..++++++.+|+++|||.+||++. ...+|+||+|||||+.|||
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDp 826 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDP 826 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccCh
Confidence 99999999999999999999999999999999999999999999999999999999997 4668999999999999999
Q ss_pred hhhCCCCcceecccCCCCHH-HHHHHHHHHHhcCCCCCcccHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHhc------
Q 002169 800 ALLRPGRFDRLLYVGPPNET-DREEIFRIHLRKIPCSSDVNIRELACLSE-GCTGADISLICREAAISAIEENL------ 871 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~-er~~Il~~~l~~~~~~~~~~l~~la~~t~-g~sg~dl~~l~~eA~~~a~~~~~------ 871 (957)
||+||||||+.+|+++++.. .+..+|+...+++.++.++++.++|+.+. .|||+|+..+|.+|++.|+++.+
T Consensus 827 ALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g 906 (953)
T KOG0736|consen 827 ALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG 906 (953)
T ss_pred hhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999988765 58899999999999999999999999986 89999999999999999999854
Q ss_pred ---------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 872 ---------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 872 ---------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
....|+++||.++.++.+|+ +...|+.++.+|+
T Consensus 907 ~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 907 TISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred cccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 12358999999999999999 7789999888874
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=570.17 Aligned_cols=454 Identities=36% Similarity=0.588 Sum_probs=404.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
+..+.+|||+||+|||||.|+++++.+.. +++..++|+.+-........+.+..+|..+..++|+||++|++|.|+
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 34467899999999999999999998874 46678999999887777777889999999999999999999999999
Q ss_pred cCCcCCC---chHHHHHHHHHHHHhhccccC-CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc
Q 002169 402 PARKDGG---EELSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 402 ~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~-~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~ 477 (957)
....... +....++...|.+.++.+... ..+.||++.+....+.|.|.++++|+..+.++.|+..+|.+||...++
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 8332222 234556555555666655443 346899999999999999999999999999999999999999999988
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCcccccccccccccccc
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITES 557 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (957)
+........+++.++..|.||...|+..++.+|...|+......
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~------------------------------------ 631 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN------------------------------------ 631 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence 87655566778889999999999999999999988887322110
Q ss_pred ccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHH
Q 002169 558 SRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVI 637 (957)
Q Consensus 558 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~ 637 (957)
... .++.++|.+++....|.++|.+-
T Consensus 632 -----------------------------------------------------~~k-lltke~f~ksL~~F~P~aLR~ik 657 (952)
T KOG0735|consen 632 -----------------------------------------------------GPK-LLTKELFEKSLKDFVPLALRGIK 657 (952)
T ss_pred -----------------------------------------------------Ccc-cchHHHHHHHHHhcChHHhhhcc
Confidence 001 46789999999999999999886
Q ss_pred hhcC-CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 638 LEVP-KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 638 ~e~p-~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..-+ ..+|+||+|+.++|+.+++.++||.+++..|...+++.+.|||||||||||||.||.++|..++..||.|+++++
T Consensus 658 ~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl 737 (952)
T KOG0735|consen 658 LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL 737 (952)
T ss_pred ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH
Confidence 5554 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
+++|+|.+++++|.+|.+|+..+||||||||+|++++.|+.+. .++++|++||||++|||.+...+|.|++||.||+.
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs--TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS--TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC--CCchHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 9999999999999999999999999999999999999998764 46999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
|||||+||||+|+.++.+.|+..+|.+|++..........++|++.+|..|+||+|+|+..++..|-+.|.++.+
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988754
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=565.31 Aligned_cols=483 Identities=51% Similarity=0.810 Sum_probs=442.7
Q ss_pred hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcc
Q 002169 319 STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELD 398 (957)
Q Consensus 319 ~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD 398 (957)
+.++.+++.++++++++||||||||++++++|.. +..+..++++++.+++.|+.+...+.+|+.+....|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~ 86 (494)
T COG0464 8 ELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEID 86 (494)
T ss_pred HHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhh
Confidence 5667789999999999999999999999999999 776688999999999999999999999999999999999999999
Q ss_pred ccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 399 AIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 399 ~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
.+++.+.........+++.+++..++++. ...+.+++.+|++..++++++++|||++.+.+..|+...+.+|++.+...
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~ 165 (494)
T COG0464 87 ALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRL 165 (494)
T ss_pred hcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhc
Confidence 99999887666788899999999999998 44488888999999999999999999999999999999999999998888
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccc
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESS 558 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (957)
+... .+...+.++..+.||+++++..+++++.+.+.+|...
T Consensus 166 ~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-------------------------------------- 206 (494)
T COG0464 166 MFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-------------------------------------- 206 (494)
T ss_pred CCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc--------------------------------------
Confidence 7765 4778999999999999999999999999998877420
Q ss_pred cccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHh
Q 002169 559 RDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVIL 638 (957)
Q Consensus 559 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~ 638 (957)
.....+.++..+|..++..+.|+ +++..
T Consensus 207 --------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 234 (494)
T COG0464 207 --------------------------------------------------LVGEYIGVTEDDFEEALKKVLPS--RGVLF 234 (494)
T ss_pred --------------------------------------------------cCcccccccHHHHHHHHHhcCcc--ccccc
Confidence 01123457788999999999988 78888
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.+.++|++++|++.+|+.+++.+.|++.+++.|...++++++|+|||||||||||++|+++|.+++.+|+.++++++++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+|+|++++.++.+|..|+..+||||||||+|+++..|+...++ ...+++++++.+|+++....+|+||+|||+|+.+|
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld 392 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD 392 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCceEEEecCCCccccC
Confidence 9999999999999999999999999999999999988655332 33799999999999999999999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC--CCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP--CSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~--~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
+|++||||||++|+|++|+..+|.+||+.++.+.. +..++++..+++.|+||+|+||..+|++|++.++.+.. ...|
T Consensus 393 ~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-~~~~ 471 (494)
T COG0464 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-RREV 471 (494)
T ss_pred HhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-cCCc
Confidence 99999999999999999999999999999999554 45789999999999999999999999999999999864 5579
Q ss_pred CHHHHHHHHHhhCCCchHHHHHH
Q 002169 877 TMQHLKTAIRHVQPSEIHSYKEL 899 (957)
Q Consensus 877 t~~d~~~al~~~~p~~~~~y~~~ 899 (957)
+.+||..|++++.|+.. |++|
T Consensus 472 ~~~~~~~a~~~~~p~~~--~~~~ 492 (494)
T COG0464 472 TLDDFLDALKKIKPSVT--YEEW 492 (494)
T ss_pred cHHHHHHHHHhcCCCCC--hhhc
Confidence 99999999999999844 5554
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-54 Score=460.50 Aligned_cols=252 Identities=46% Similarity=0.761 Sum_probs=239.6
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.+.|.++|+||+|+++.+++|+|.++.|+++|++|..+|+.||+|+|||||||||||+||||+|++.++.||++.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
+.+|+|++.+-+|++|+.|+..+||||||||||+++..|...+.+ ...-.|.+-+||++|||+.+.+++-||+|||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999998665433 2334577788999999999999999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+||||+||||||+.|+||+|+.+.|.+||++|.+++.+..++|++.||+.++|+||+|++++|.||++.|+++. ...
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~--R~~ 379 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER--RDE 379 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--cCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 778
Q ss_pred CCHHHHHHHHHhhCC
Q 002169 876 ITMQHLKTAIRHVQP 890 (957)
Q Consensus 876 It~~d~~~al~~~~p 890 (957)
||++||.+|++++..
T Consensus 380 Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 380 VTMEDFLKAVEKVVK 394 (406)
T ss_pred ecHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=427.46 Aligned_cols=261 Identities=37% Similarity=0.607 Sum_probs=231.6
Q ss_pred CceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEE
Q 002169 256 ETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLL 334 (957)
Q Consensus 256 ~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL 334 (957)
...|.+....++....+++...|..... .....+.++|++|||++++++.|+|.|++|+.+ +.|+.+|+.||+||||
T Consensus 113 G~rVal~~~s~~Iv~vLp~~~Dp~V~~M--~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLL 190 (406)
T COG1222 113 GMRVALNRDSYSIVRVLPPEVDPRVSVM--EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLL 190 (406)
T ss_pred CCEEEEcCCcceeeeeCCCccCchhhee--eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEe
Confidence 3444444444444444444444433322 233456789999999999999999999999998 9999999999999999
Q ss_pred EcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chH
Q 002169 335 HGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EEL 411 (957)
Q Consensus 335 ~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~ 411 (957)
|||||||||+||||+|++.++.|+.+.+++++.+|+||..+.+|++|+.|+.++||||||||||+++.+|.+.+ +..
T Consensus 191 YGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrE 270 (406)
T COG1222 191 YGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDRE 270 (406)
T ss_pred eCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986643 456
Q ss_pred HHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHH
Q 002169 412 SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 491 (957)
Q Consensus 412 ~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~L 491 (957)
.+|..-+|++.||++...+++-||+|||+++.|||||+||||||+.|+||.|+.+.|.+||+.|.++|.+. .+.+++.|
T Consensus 271 VQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~l 349 (406)
T COG1222 271 VQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELL 349 (406)
T ss_pred HHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 492 SMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
|..++|++||||+++|.+|.|.|+|..+
T Consensus 350 a~~~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 350 ARLTEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred HHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence 9999999999999999999999998643
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=413.07 Aligned_cols=544 Identities=24% Similarity=0.343 Sum_probs=384.6
Q ss_pred cchhHHHHHHHHHHhhccCCcccCCCEEEEeecC-eeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceE
Q 002169 181 EDESAIKLLQTCAASWLYSRSLLCGNLVAVPMLS-EISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKV 259 (957)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v 259 (957)
..+...+.+-+..++...+.++.+|+.+...|-| ....+.|.++..-... .+..+........-..-++...|.|
T Consensus 111 sep~Dad~ma~qF~~~y~~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D~~----~~~~~~a~~~~~~~~~G~l~~nT~i 186 (744)
T KOG0741|consen 111 SEPFDADEMAKQFKRQYNSQAFSVGQQLVFEFNGNKLLGLKVKDIEAFDPG----ISEGESAVTKRQKIERGLLLGNTQI 186 (744)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCccEEEEEecCceEeeeEEEEEeeeccc----cccCCcccccccceeeeEeecCcEE
Confidence 3444557788888999999999999999999997 6788888766542110 0000000000001122345566666
Q ss_pred EEcCCcccccccccC-CCCCchhhhhhccccccccccc--ccCCcHHHHHHH-HHHHHhhhh-hhhhhhcCCCCCCeEEE
Q 002169 260 YLYPPLNAVSKSLRE-GTLPNAQIEFQNVQATVEQDIS--KLGGLSKEYAIL-KDIIISSSV-KSTLSSLGLRPTKGVLL 334 (957)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~i~Gl~~~~~~l-~e~i~~~~~-~~~~~~l~i~~~~~vLL 334 (957)
.+....+....-.-. ...+..+.. . .+..+|+ .|||++.+...| +........ ++..+++|+..-+|+||
T Consensus 187 ~F~k~~~s~lnL~~~~~~k~~~n~i---i--~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLL 261 (744)
T KOG0741|consen 187 VFEKAENSSLNLIGKSKTKPASNSI---I--NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILL 261 (744)
T ss_pred EEEeccCcceEeeccccccchhccc---c--CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEE
Confidence 554433221110000 001111110 1 1122233 489999888776 344333333 37778999999999999
Q ss_pred EcCCCChHHHHHHHHHHHcCC-cEEEEecccccccccchhHHHHHHHHHHHhcc--------CCeEEEEcCccccccCCc
Q 002169 335 HGPPGTGKTSLARLCAHDSGV-NLFTVNGPEVVSQNYGESEQALHEVFDSASQS--------APAVVFIDELDAIAPARK 405 (957)
Q Consensus 335 ~GppGtGKTtLaralA~~l~~-~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~--------~p~IL~IDEiD~l~~~~~ 405 (957)
|||||||||.+||-+...+++ +--.|||+++.++|+|++|.++|.+|..|... .-.||++||||++|.+|+
T Consensus 262 yGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRG 341 (744)
T KOG0741|consen 262 YGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRG 341 (744)
T ss_pred ECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcC
Confidence 999999999999999999976 34679999999999999999999999987632 235999999999999987
Q ss_pred CCC--chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC---
Q 002169 406 DGG--EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME--- 480 (957)
Q Consensus 406 ~~~--~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~--- 480 (957)
+.. ......+++|||.-||++.+-.++.||+.||+.|.||+||+|||||...++|..|++..|.+|++.|+.+|.
T Consensus 342 S~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~ 421 (744)
T KOG0741|consen 342 SMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENN 421 (744)
T ss_pred CCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcC
Confidence 643 467889999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccc
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRD 560 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (957)
.--+++++++||..|..|+|++|+.+++.|...|+.|........
T Consensus 422 ~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~----------------------------------- 466 (744)
T KOG0741|consen 422 KLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKV----------------------------------- 466 (744)
T ss_pred CCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcce-----------------------------------
Confidence 223788999999999999999999999999999999875522000
Q ss_pred cccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhh-hHH--
Q 002169 561 CLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMR-EVI-- 637 (957)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~-~~~-- 637 (957)
....+..+.++++++||..|+..++|..-. +..
T Consensus 467 --------------------------------------------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 467 --------------------------------------------EVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLE 502 (744)
T ss_pred --------------------------------------------ecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence 011234466899999999999999998521 111
Q ss_pred --hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 638 --LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 638 --~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
+.---+.|..-+ -+.+.+. ....+..+.-...+-..+||.||||+|||+||--+|..++.||+.+-.++
T Consensus 503 ~~~~~Gmi~~g~~v-----~~il~~G----~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 503 RFVMNGMINWGPPV-----TRILDDG----KLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE 573 (744)
T ss_pred HHHhCCceeecccH-----HHHHhhH----HHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH
Confidence 112224454321 1111111 11111122223445566999999999999999999999999999876554
Q ss_pred -cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc-EEEEEecCC
Q 002169 716 -LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN-VTVIAATNR 793 (957)
Q Consensus 716 -l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~-v~VI~aTN~ 793 (957)
+.+..-...-..++.+|+.|.+..-+||++|+|++|.+.- .-+..+++.++.+|+..+....+.++ .+|++||.+
T Consensus 574 ~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v---pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 574 DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV---PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred HccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 3332222234567999999999999999999999998764 23456788888899999988766654 555566665
Q ss_pred CCCCC-hhhhCCCCcceecccCCCCH-HHHHHHHH
Q 002169 794 PDKID-PALLRPGRFDRLLYVGPPNE-TDREEIFR 826 (957)
Q Consensus 794 ~~~id-~aLlr~gRfd~~i~~~~P~~-~er~~Il~ 826 (957)
.+.+. -.++. -|+..+.+|..+. ++..+++.
T Consensus 651 ~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 651 REVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 54432 23444 7888999987766 44555544
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=419.34 Aligned_cols=297 Identities=39% Similarity=0.660 Sum_probs=271.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.++++|.+|+|++....+|.+.+.. ++||+.|..+|+.|++|+||+||||||||+||+|||++++.||+.|+++++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3578999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC----CcEEEEEecCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR----VNVTVIAATNRPD 795 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~----~~v~VI~aTN~~~ 795 (957)
+.|++++++|++|+.|+..+|||+||||||++.+.|... +-....|++.|||+.||++... ..|+||+|||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999998653 4467789999999999998543 5799999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC---
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD--- 872 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~--- 872 (957)
.+||||+|+||||+.|.+..|+..+|.+||+..++++.+..++++..||..|.||.|+|+.++|.+|+..|+++.++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987431
Q ss_pred ---------------------------------------------------------CCCCCHHHHHHHHHhhCCC----
Q 002169 873 ---------------------------------------------------------ASRITMQHLKTAIRHVQPS---- 891 (957)
Q Consensus 873 ---------------------------------------------------------~~~It~~d~~~al~~~~p~---- 891 (957)
...|+.+||++|+..++|+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 1136789999999999998
Q ss_pred -----------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCccc
Q 002169 892 -----------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQS 951 (957)
Q Consensus 892 -----------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~ 951 (957)
++..++.++..|+..+..+......|..+......|.+|| ||+|-|||
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~------------GPPGCGKT 559 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLC------------GPPGCGKT 559 (802)
T ss_pred cceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEe------------CCCCccHH
Confidence 5678999999999999999988888777666656665555 78888886
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=399.21 Aligned_cols=266 Identities=44% Similarity=0.708 Sum_probs=247.4
Q ss_pred hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 634 ~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+.++.+.|+++|+||.|+.++|+.|+|++..|+..|+.|+.+ .+|-+|+|++||||||||+||||+|.+++..|+.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 456677899999999999999999999999999999999974 6788999999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC-Cc---EEEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR-VN---VTVIA 789 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~---v~VI~ 789 (957)
+.+.++|.|++++.+|.+|+.|+..+|++|||||||+|+..|+.. +..++++|+.++||.+|||+... .+ |+|++
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999999999999999999999999776 45688999999999999998543 23 89999
Q ss_pred ecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 790 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 790 aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
|||.||.||+||+| ||.+.||||+|+.+.|..++++.++..+..++++++.+|+.++||||+||.++|++|.++++++
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcC---------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHHH
Q 002169 870 NLD---------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 903 (957)
Q Consensus 870 ~~~---------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~ 903 (957)
.+. ...|+..||++|+.+++|+ .++.|++|...|
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 541 2468999999999999998 667888887766
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=416.91 Aligned_cols=229 Identities=44% Similarity=0.697 Sum_probs=221.0
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
+.++.+|++|||++++|..|++.|.+|+.+ +.|.++|+.|++|||||||||||||++||++|++.+.+|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 456789999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
+|+|++|+.++++|+.|++..|||||+||||+++..|+...+....|++++||++||++....+|+||++||+|+.||+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998666788999999999999999999999999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+.||||||+.|+||+|+.+.|.+||+.++++++.. ++.+++.||+.|+||+|+||..+|++|+..|+++.
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988 66899999999999999999999999999999864
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=393.83 Aligned_cols=382 Identities=25% Similarity=0.385 Sum_probs=298.7
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHH
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~ 467 (957)
.|.|+++.+++.++.. . .+...|.++...+....+.+||.+.+ -.+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~------~---~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND------I---SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc------h---HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 3789999999998721 1 12233333333333344555555542 457777775 44568999999999
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCcccccc
Q 002169 468 RLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQD 547 (957)
Q Consensus 468 r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (957)
+.++++.+.......+++..++.+++.+.|++-.+++.++..+.. +... .+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~~-~~~----------------------- 198 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----TYKT-IDE----------------------- 198 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCC-CCh-----------------------
Confidence 999999888777778899999999999999999999988765321 1000 000
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHh
Q 002169 548 SDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMK 627 (957)
Q Consensus 548 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~ 627 (957)
+. +.. -+......
T Consensus 199 -------------------------------------------------------------~~---~~~---i~~~k~q~ 211 (489)
T CHL00195 199 -------------------------------------------------------------NS---IPL---ILEEKKQI 211 (489)
T ss_pred -------------------------------------------------------------hh---HHH---HHHHHHHH
Confidence 00 000 00000001
Q ss_pred cCchhhhhHHhh--cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC
Q 002169 628 VRPSAMREVILE--VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 628 ~~ps~~~~~~~e--~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
+... ...+ .+.++|++|+|++.+|+.+.+.... ......+.|+++++|+|||||||||||++||++|++++
T Consensus 212 ~~~~----~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 212 ISQT----EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred Hhhh----ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 1111 1122 2578899999999999988875432 23445678999999999999999999999999999999
Q ss_pred CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcE
Q 002169 706 LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785 (957)
Q Consensus 706 ~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 785 (957)
.+|+.++++.++++|+|+++..++.+|..|+..+||||||||||.++..+...+ ..+...+++.+++..|+. ...++
T Consensus 285 ~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~-d~~~~~rvl~~lL~~l~~--~~~~V 361 (489)
T CHL00195 285 LPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG-DSGTTNRVLATFITWLSE--KKSPV 361 (489)
T ss_pred CCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC-CchHHHHHHHHHHHHHhc--CCCce
Confidence 999999999999999999999999999999999999999999999887544332 235678999999999985 35589
Q ss_pred EEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC--CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 786 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS--SDVNIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 786 ~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~--~~~~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
+||+|||+++.+|++++|+||||+.|+++.|+.++|.+||+.++.+.... .+.++..+|..|+||||+||+++|++|+
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886533 4788999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 864 ISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 864 ~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..|..+. ..++.+||..|++++.|.
T Consensus 442 ~~A~~~~---~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 442 YIAFYEK---REFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHcC---CCcCHHHHHHHHHhcCCC
Confidence 9998764 569999999999999997
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=393.53 Aligned_cols=245 Identities=42% Similarity=0.680 Sum_probs=233.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+++|+|+-|.+++|++|.|.+++ ++.|+.|.++|-+.|+||||+||||||||+||||+|+|.+.||+...++++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 4588999999999999999999987 799999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
|||...+.+|.+|+.|++.+||||||||||++...|..... ...+..++|||.+|||+.++.+++||+|||.|+.+|+
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999988865432 3788999999999999999999999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~ 879 (957)
||.||||||+.|.+|.||...|.+||+.|+.++++..++|+.-+|+-|.||+|+||+++++.|++.|.... ...|++.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--a~~VtM~ 532 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--AEMVTMK 532 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--cccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 6789999
Q ss_pred HHHHHHHhhC
Q 002169 880 HLKTAIRHVQ 889 (957)
Q Consensus 880 d~~~al~~~~ 889 (957)
|++.|-.++.
T Consensus 533 ~LE~akDrIl 542 (752)
T KOG0734|consen 533 HLEFAKDRIL 542 (752)
T ss_pred HHhhhhhhee
Confidence 9999987754
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=358.23 Aligned_cols=254 Identities=41% Similarity=0.712 Sum_probs=239.5
Q ss_pred HHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 636 ~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
.+..+|+.+|+-++|++..+++++|.++.|.+||++|+.+|+..|+|+|||||||||||++|+|+|....+.||++++++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
+..+|+|+..+-+|++|-.|+..+|+|||.||||++...|...+.+ .+.-.|.+-+||+.+|+++...++-||+|||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 9999999999999999999999999999999999999888655433 344567778899999999999999999999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~ 874 (957)
+.+||||+||||+|+.|+||+|+.+.|.+|+++|.+++.+...+++..+|+...|.||+++..+|.+|++.|+++. ..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer--rv 374 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER--RV 374 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--hc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred CCCHHHHHHHHHhhCCC
Q 002169 875 RITMQHLKTAIRHVQPS 891 (957)
Q Consensus 875 ~It~~d~~~al~~~~p~ 891 (957)
.+|.+||+-|+.++...
T Consensus 375 hvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 375 HVTQEDFEMAVAKVMQK 391 (404)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 89999999999887654
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=357.33 Aligned_cols=251 Identities=40% Similarity=0.692 Sum_probs=235.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.+++.||+|++-.|++++|+++.|+.|.++++++|+.||+|+|+|||||||||+||||+|+.....||++.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+|.|+..+.+|.+|..|+.++|+||||||+|+++..|-....+ ...-.|++-+||+.|||+....+|-||+|||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999999888554322 233457778899999999999999999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
||||+||||+|+.|+||+|+..+++-+|.....++.+.+++|++.+..+.+..||+||..+|++|++.|.+++ .-.|.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--ryvvl 385 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN--RYVVL 385 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 66789
Q ss_pred HHHHHHHHHhhCCC
Q 002169 878 MQHLKTAIRHVQPS 891 (957)
Q Consensus 878 ~~d~~~al~~~~p~ 891 (957)
..||+++.+.....
T Consensus 386 ~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 386 QKDFEKAYKTVVKK 399 (408)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999998875543
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=361.25 Aligned_cols=249 Identities=40% Similarity=0.708 Sum_probs=232.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
..|..+|.||+|++..+++|+|.++.|+.||+.+..+|+.||+|++|||+||||||+||||+|+...+.|+++-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCC-cchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~-~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+|.|+..+-+|++|..|...+|+|+||||||++...|-...+++ ..-.|.+-+||+.+|++..+++|-||+|||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999998885543332 22345566788899999999999999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
||||+||||+|+.|.|+.||...+++||.+|..++.+..+++++.+...-+.+||+||.++|.+|++.|+++. ...++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer--Rm~vt 415 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER--RMKVT 415 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH--Hhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 77899
Q ss_pred HHHHHHHHHhhC
Q 002169 878 MQHLKTAIRHVQ 889 (957)
Q Consensus 878 ~~d~~~al~~~~ 889 (957)
++||..|.+++.
T Consensus 416 ~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 416 MEDFKKAKEKVL 427 (440)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=390.58 Aligned_cols=235 Identities=36% Similarity=0.601 Sum_probs=218.7
Q ss_pred ccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 287 VQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 287 ~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
.++.+.+.|+||||++++|..|.+-|.+|+.|..+...|+++..|||||||||||||.+|||+|.++...|+.|.|++++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 35678899999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC--chHHHHHHHHHHHHhhccc--cCCCeEEEEecCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG--EELSQRMVATLLNLMDGVC--RTDGVLVIAATNRPD 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~--~~~~~~i~~~Ll~~ld~l~--~~~~v~vI~ttN~~~ 442 (957)
++|+|++|+++|++|++|+...|||||+||+|+++|+|+..+ +.+..|++.||+.+||++. ....++||++|||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 999999999999999999999999999999999999997655 5688999999999999996 567899999999999
Q ss_pred CchhhhhCCCCcceeeeecCC-CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 443 SIEPALRRPGRLDREIEIAVP-SPAQRLEILHALLSGMEHSLLDSEVEYLSMAT-HGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t-~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.|||+|.||||||+-++++++ +.+.+..||+...+++.+. .++++..+|+.+ ..|+|||+.++|..|.+.|++|...
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 5567789999999999988 888999999985 6799999999999999999999765
Q ss_pred cc
Q 002169 521 IQ 522 (957)
Q Consensus 521 ~~ 522 (957)
..
T Consensus 902 ~i 903 (953)
T KOG0736|consen 902 DI 903 (953)
T ss_pred Hh
Confidence 33
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=351.80 Aligned_cols=260 Identities=42% Similarity=0.691 Sum_probs=238.9
Q ss_pred cCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 628 ~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+.|+-.-..+.|.|+++++|++|-++.++.++|.++.|+.||+.|-.+|+.||+|+|+|||||||||++|+|+|+..+..
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 44444333456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEE
Q 002169 708 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 708 ~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
||++-+++++.+|+|+..+-+|++|+.|+....|||||||||++.+.|-..+. +...-.|.+-+|+++||++..++++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999988865532 22334566677888899999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++|||+|+.+||||+||||+|+.++|.+|+.+.|.+||++|.+.+.+..++.++-+|+.+..-+|++|+.+|.+|++.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~ 889 (957)
++.. .+..|..||.+|+.++.
T Consensus 399 irar--rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 399 IRAR--RKVATEKDFLDAVNKVV 419 (435)
T ss_pred HHHH--hhhhhHHHHHHHHHHHH
Confidence 9876 67789999999998764
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=346.78 Aligned_cols=251 Identities=42% Similarity=0.695 Sum_probs=235.2
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 717 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~ 717 (957)
-+.|...|+||+|++..++++.+++..|+.|++.|+++|++||+|+|+|||||||||++|||.|...+..|..+-++.++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
..|+|...+-+|..|+.|+..+|+||||||+|++...|.... .+...-.|.+-+||+.|||+.+..++-||+|||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 999999999999999999999999999999999988875543 2233345667788999999999999999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
+||||+|.||+|+.|+||.|+.+.|.+|+++|.+++....|+++++||+-|++|+|++..++|-+|++.|+++. ...|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~--atev 400 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG--ATEV 400 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 7789
Q ss_pred CHHHHHHHHHhhCC
Q 002169 877 TMQHLKTAIRHVQP 890 (957)
Q Consensus 877 t~~d~~~al~~~~p 890 (957)
+.+||.+.+..++.
T Consensus 401 ~heDfmegI~eVqa 414 (424)
T KOG0652|consen 401 THEDFMEGILEVQA 414 (424)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887764
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=343.90 Aligned_cols=267 Identities=34% Similarity=0.534 Sum_probs=236.5
Q ss_pred cCCceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeE
Q 002169 254 NHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGV 332 (957)
Q Consensus 254 ~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~v 332 (957)
.|.+.+.++..+|.....+++...+...+. .....+..+|.++||++-+|+.+++.+++|+.+ +.++..|+.||+||
T Consensus 115 kps~svalhrhsnalvdvlppeadssi~ml--~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgv 192 (408)
T KOG0727|consen 115 KPSASVALHRHSNALVDVLPPEADSSISML--GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGV 192 (408)
T ss_pred CCccchhhhhcccceeeccCCccccccccc--CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcce
Confidence 345666666666655555554444333222 223446678999999999999999999999998 88899999999999
Q ss_pred EEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---c
Q 002169 333 LLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---E 409 (957)
Q Consensus 333 LL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~ 409 (957)
|||||||||||+|++++|+...+.|+.+.|++++.+|.|+....++.+|..|+.+.|+||||||+|+++.+|-+.+ +
T Consensus 193 llygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgad 272 (408)
T KOG0727|consen 193 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGAD 272 (408)
T ss_pred EEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886654 4
Q ss_pred hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHH
Q 002169 410 ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVE 489 (957)
Q Consensus 410 ~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~ 489 (957)
...+|++-+|++.||++....++-||++||+.+.+||++.||||+|+.|+||.|+..+++-+|..++.++.+. ++.+++
T Consensus 273 revqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle 351 (408)
T KOG0727|consen 273 REVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLE 351 (408)
T ss_pred HHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 490 YLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 490 ~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
.+..+.+..+|+||.++|++|.|.|+|..+....
T Consensus 352 ~~v~rpdkis~adi~aicqeagm~avr~nryvvl 385 (408)
T KOG0727|consen 352 DLVARPDKISGADINAICQEAGMLAVRENRYVVL 385 (408)
T ss_pred HHhcCccccchhhHHHHHHHHhHHHHHhcceeee
Confidence 9999999999999999999999999998665443
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=354.65 Aligned_cols=266 Identities=36% Similarity=0.659 Sum_probs=240.1
Q ss_pred hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe
Q 002169 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 712 (957)
Q Consensus 633 ~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~ 712 (957)
...++.|-|++.|+||.|++.+|+.|+|++..|.+.|++|.. +..|-+|+||||||||||+.||||+|.+.+..|++|+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 345678999999999999999999999999999999999986 6778899999999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEec
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAAT 791 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aT 791 (957)
.++|+++|+|++++-++.+|+.|+.+.|+||||||||+++..|... ...+.+|+..++|.+|+++. ...+++|++||
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 9999999999999999999999999999999999999999887544 34688999999999999984 45689999999
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
|-|+.+|.|++| ||++.||+|+|+...|..+|+.++...+.. .+.|+.+|++.|+||||+||.-+++.|.+.-+++.
T Consensus 277 NiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 277 NIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred CCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 999999999999 999999999999999999999999887754 45789999999999999999999999999877752
Q ss_pred c--------------------------------------------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHH
Q 002169 871 L--------------------------------------------DASRITMQHLKTAIRHVQPS----EIHSYKELSAK 902 (957)
Q Consensus 871 ~--------------------------------------------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~ 902 (957)
. -...||+.||..++.+.+|+ ++...+++.+.
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~d 434 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTED 434 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Confidence 1 13468999999999999998 55566666655
Q ss_pred H
Q 002169 903 F 903 (957)
Q Consensus 903 ~ 903 (957)
|
T Consensus 435 F 435 (439)
T KOG0739|consen 435 F 435 (439)
T ss_pred h
Confidence 5
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=391.78 Aligned_cols=248 Identities=44% Similarity=0.754 Sum_probs=233.2
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
..++|.|+.|.+++|++|+|.+.+ +++|+.|.++|.+.|+|+||+||||||||+||||+|+|.+.||+.+++++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 468999999999999999999986 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC--CCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK--ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~--~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+|.....+|.+|..|+.++|||+|+||||++...|+. ...++...+..++|||.+||+.....+|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999998852 23445667788999999999998888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
+||+||||||+.|+++.|+...|.+|++.|+++..+. +++++..+|.+|.||+|+||.++|++|++.|.++. ...|+
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~--~~~i~ 542 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG--LREIG 542 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc--cCccc
Confidence 9999999999999999999999999999999999985 77889999999999999999999999999999986 67899
Q ss_pred HHHHHHHHHhhCCC
Q 002169 878 MQHLKTAIRHVQPS 891 (957)
Q Consensus 878 ~~d~~~al~~~~p~ 891 (957)
..||..|++++.-.
T Consensus 543 ~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 543 TKDLEYAIERVIAG 556 (774)
T ss_pred hhhHHHHHHHHhcc
Confidence 99999999976655
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=352.96 Aligned_cols=231 Identities=35% Similarity=0.556 Sum_probs=215.1
Q ss_pred ccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 287 VQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 287 ~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...++...|++|.|+.+.|+.|+|.|.+|+....|.+-...|.++||++||||||||+||+|+|.+++..||.|+.+.+.
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 45566788999999999999999999999888777777788999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC-chHHHHHHHHHHHHhhccccC-CC---eEEEEecCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-EELSQRMVATLLNLMDGVCRT-DG---VLVIAATNRP 441 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~-~~~~~~i~~~Ll~~ld~l~~~-~~---v~vI~ttN~~ 441 (957)
++|.|++|+.+|-+|+.|+.++|++|||||||+|+.+|+..+ .+.++|+.++||..||++... .+ |+|+++||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999987655 578899999999999998432 33 8999999999
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
++||+|++| ||.+.|+||+|+.+.|..+++..++..... ++..++.++..++||+|+||..+|++|.|.++||...
T Consensus 363 WdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 363 WDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred cchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999988776 7888999999999999999999999999999999765
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=367.14 Aligned_cols=253 Identities=39% Similarity=0.665 Sum_probs=234.3
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.+.|.++|+||+|++.+|+++++.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
..+|+|++++.++.+|..|+..+|+||||||+|.++..|.....+ .....+++.+++..|+++....++.||+|||+++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999998776433222 2334578889999999987778999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++||||||+.|+|++|+.++|..||+.++.++++..++++.+++..|+||+|+||.++|++|++.|+++. ...
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--RYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 568
Q ss_pred CCHHHHHHHHHhhCCC
Q 002169 876 ITMQHLKTAIRHVQPS 891 (957)
Q Consensus 876 It~~d~~~al~~~~p~ 891 (957)
|+.+||.+|+.++...
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999987543
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=328.59 Aligned_cols=264 Identities=34% Similarity=0.547 Sum_probs=232.4
Q ss_pred EEcCCceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCC
Q 002169 252 VINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTK 330 (957)
Q Consensus 252 ~i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~ 330 (957)
-+.+.+.+.+...+....+.++....|-..+. -..+++..+|+-+||++.+++.|++.|++|..+ +.|+.+|+..|+
T Consensus 105 ~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLM--mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK 182 (404)
T KOG0728|consen 105 DVTPSSRVALRNDSYTLHKILPNKVDPLVSLM--MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 182 (404)
T ss_pred hcCCcceEEEeccchHHHHhcccccchhhHHH--hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc
Confidence 35566777777666655555544444332221 234556778999999999999999999999988 889999999999
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC--
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-- 408 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~-- 408 (957)
|+|||||||||||.||+++|+...+.|+.++|++++.+|+|+....++++|-.|+.++|+|||+||||++...|.+++
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g 262 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG 262 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875533
Q ss_pred -chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHH
Q 002169 409 -EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSE 487 (957)
Q Consensus 409 -~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~ 487 (957)
+...+|..-+|++.+|++....++-||++||+.+-+|||+.||||+|+.|+||.|+++.|.+|++.+.+++++. ...+
T Consensus 263 gdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~ 341 (404)
T KOG0728|consen 263 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGIN 341 (404)
T ss_pred ccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccC
Confidence 44566777788899999999999999999999999999999999999999999999999999999999998876 6677
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 488 VEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 488 l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+..+|+...|-+|++++.+|.+|.|.|+|..
T Consensus 342 l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 342 LRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred HHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 9999999999999999999999999999854
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=332.98 Aligned_cols=244 Identities=33% Similarity=0.572 Sum_probs=221.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
..++++++|++||+++|+.++-.+++ +.+|+.|.+| .|+++|||||||||||++|||+|++.+.|++.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 45789999999999999998877765 7888887664 6899999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.++|+..+.+++++++|++.+|||+||||+|+++-.|....-- +.-.+++|+||++||++.++.+|+.|+|||+|+.+|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR-GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR-GDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc-ccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 9999999999999999999999999999999998766443222 234678999999999999999999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHH-HHHHHHHHHHHHHhcCCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADIS-LICREAAISAIEENLDASRIT 877 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~-~l~~eA~~~a~~~~~~~~~It 877 (957)
+|+++ ||...|+|.+|+.++|.+|++.+.+++|+.-+.++..++..|.|+||+||. .++..|...|+.+. ...|+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--~e~v~ 344 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--REKVE 344 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc--hhhhh
Confidence 99999 999999999999999999999999999999999999999999999999996 56777888888886 67899
Q ss_pred HHHHHHHHHhhCCC
Q 002169 878 MQHLKTAIRHVQPS 891 (957)
Q Consensus 878 ~~d~~~al~~~~p~ 891 (957)
.+|++.|+++..+.
T Consensus 345 ~edie~al~k~r~~ 358 (368)
T COG1223 345 REDIEKALKKERKR 358 (368)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999975543
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=359.65 Aligned_cols=233 Identities=35% Similarity=0.557 Sum_probs=219.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
...+|+++.|+++.|++|.|+|++...+..|.++|-+-|+||||+||||||||+||||+|++.+.+|+...|+++-..++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 45679999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhC
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r 450 (957)
|...+++|.+|+.|++.+||||||||||++..+|........+..++|||..||++.+..+++||++||.|+.+|+||.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 99999999999999999999999999999999998776668889999999999999999999999999999999999999
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccc
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~ 524 (957)
|||||++|.+|.||...|.+||++|+.+..+. .+++...+|+-|.||+|+||+++++.|+..|..........
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999998877 78899999999999999999999999999987765554443
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=381.37 Aligned_cols=387 Identities=32% Similarity=0.507 Sum_probs=305.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPE 364 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~ 364 (957)
...+|+++||++.++..|+|+|.+|+.+ +.|+++++.|++|||||||||||||+.|+++|..+ ...|+.-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3467999999999999999999999887 88999999999999999999999999999999877 34567788999
Q ss_pred ccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 365 VVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 365 l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
..++|+|+.+..++.+|+.|+...|+|||+||||.+++.|...++.....++.+|+.+||++..++.++||++||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccc
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~ 524 (957)
|||+|||||||++++|++|+.+.|.+|+..+.++....+....+..+|+.+.||.|+||+++|.+|++.+++|-...+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999886553332
Q ss_pred ccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCC
Q 002169 525 SDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGG 604 (957)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (957)
...
T Consensus 500 s~~----------------------------------------------------------------------------- 502 (1080)
T KOG0732|consen 500 SSD----------------------------------------------------------------------------- 502 (1080)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCcc--------ccc-------cCChHHHHHHHHHHHhchhhcH
Q 002169 605 MFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVK--------WED-------VGGQREVKTQLMEAVEWPQKHQ 669 (957)
Q Consensus 605 ~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~--------~~d-------i~G~~~vk~~l~e~i~~~~~~~ 669 (957)
...-....+++..+||..|+.++.|+..|.......+.. +.+ +.-.......+.+...|..+..
T Consensus 503 -kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~ 581 (1080)
T KOG0732|consen 503 -KLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSF 581 (1080)
T ss_pred -cccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhh
Confidence 000111234577888888888888877664332221111 000 1111111122222222211111
Q ss_pred HHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-CCcEEEEeCCCccccc-ccchHHHHHHHHHHHHhCCCeEEEEeC
Q 002169 670 EAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGPELFSKW-VGESEKAVRSLFAKARANAPSIIFFDE 747 (957)
Q Consensus 670 ~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~~~~i~v~~~~l~~~~-vg~~~~~ir~~f~~A~~~~p~ILfiDE 747 (957)
+.+-.+.+--...+++-|..|.|-+.+.+||-+.+ +.+......+.++..- .+.....+..+|.+|+...||||||-.
T Consensus 582 e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~ 661 (1080)
T KOG0732|consen 582 ESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPN 661 (1080)
T ss_pred hcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccc
Confidence 11000111122348889999999999999997766 5666666666655543 455678889999999999999999999
Q ss_pred Cchhhhhc
Q 002169 748 IDGLAAIR 755 (957)
Q Consensus 748 id~l~~~r 755 (957)
+|.+....
T Consensus 662 ~d~w~~~~ 669 (1080)
T KOG0732|consen 662 VDEWARVI 669 (1080)
T ss_pred hhhhhhcC
Confidence 99876443
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=368.21 Aligned_cols=247 Identities=43% Similarity=0.732 Sum_probs=234.0
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
...++|.|+.|.+++|+++.|.+.. ++.|..|..+|.+.|+|++|+||||||||+||||+|.+.+.||+.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4679999999999999999999986 789999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
|+|.....+|.+|..|++++|||+||||||++...|+.. +++...-+..++|||.+||+...+.+|+||++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999998655 3444455679999999999999888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
+||+||||||+.|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+.+++++|++.|.+++ ...|++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n--~~~i~~ 380 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN--KKEITM 380 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--CeeEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 778999
Q ss_pred HHHHHHHHhhC
Q 002169 879 QHLKTAIRHVQ 889 (957)
Q Consensus 879 ~d~~~al~~~~ 889 (957)
.||.+|..++.
T Consensus 381 ~~i~ea~drv~ 391 (596)
T COG0465 381 RDIEEAIDRVI 391 (596)
T ss_pred cchHHHHHHHh
Confidence 99999999865
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=360.29 Aligned_cols=255 Identities=47% Similarity=0.779 Sum_probs=235.5
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
..+.+.|.+.|++|+|++++++.+.+.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.+.++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++..+|+|++++.++.+|..|+..+|+||||||+|.++..+.....+ .....+.+.+++.++++.....++.||+|||+
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred HHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998776543322 12335667788888898877779999999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
++.+|++++|||||++.|+|++|+.++|.+||+.+++++++..++++..+|..|+||+|+|++++|++|++.|+++. .
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--~ 357 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--R 357 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999885 6
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 002169 874 SRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 874 ~~It~~d~~~al~~~~p~ 891 (957)
..|+.+||.+|+.++++.
T Consensus 358 ~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 358 TEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred CCcCHHHHHHHHHHHhcc
Confidence 679999999999999876
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=333.07 Aligned_cols=230 Identities=36% Similarity=0.609 Sum_probs=213.5
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
.+.+..+|.+|||++.+++.|++.+++|+.| +.++..|+.||+||+|||+||||||.||+|+|+...+.|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 3445678999999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
.+|.|+..+.+|++|+.|..++|+|+||||||++..+|-+.. +...+|..-+|++.+|++..++.+-||++||+++.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 999999999999999999999999999999999999885543 34455666678888899988999999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+||||.||||+|+.|+|+.|+...+..||+.|..++.+. .++.++.+...-+.++|+||+++|.+|.+.|+|..
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999887 77889999988999999999999999999999864
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=325.73 Aligned_cols=239 Identities=40% Similarity=0.639 Sum_probs=222.4
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+...|++|||++.+++.|.+.|.+|+.+ +.|.++|+.||+|+|+|||||||||.+||+.|.+.+..|+.+.++.++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 345568999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.|+|+..+.+|..|..|+..+|+||||||+|++..+|-+. ++...+|..-+|++.+|+++....+-||++||+.+-+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 9999999999999999999999999999999999888554 3445667777788899999999999999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccc
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~ 524 (957)
||++.|.||+|+.|+||.|+++.|..|++.|.+++... ++..++.||+.|++|+|+..+++|-+|.|.|+||...+..+
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~h 402 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTH 402 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccH
Confidence 99999999999999999999999999999999999887 88899999999999999999999999999999998877766
Q ss_pred cccc
Q 002169 525 SDVL 528 (957)
Q Consensus 525 ~~~~ 528 (957)
+++.
T Consensus 403 eDfm 406 (424)
T KOG0652|consen 403 EDFM 406 (424)
T ss_pred HHHH
Confidence 6554
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=328.58 Aligned_cols=231 Identities=31% Similarity=0.544 Sum_probs=220.0
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
...+.+.|+++.||+..|+.|++.|.+|.....|..-+..|.++|||||||||||+.||+++|.+.+..|+.|+.+++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 34566789999999999999999999998888887778889999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-ccCCCeEEEEecCCCCCchh
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-~~~~~v~vI~ttN~~~~ld~ 446 (957)
+|.|++++.++.+|+.|+.++|+||||||||.++..|.++.++.++|+..+||-.|.++ ....++.|+++||-|+.||.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 44578999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
|+|| ||++.|+||.|+...|..+|+.++...++.+++.++..|+..|+||+|+||.-+++.|.|..+|+.+.
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999998754
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=355.61 Aligned_cols=230 Identities=38% Similarity=0.634 Sum_probs=219.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..|++|||+.++++.|+++|++|-++ ..|.+..++.+.|||||||||||||.||-++|...+..|+.+.|+++.++|+|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 57899999999999999999999887 88899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCC
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 451 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~ 451 (957)
.+|+.+|.+|++|...+|||||+||+|+++|+|+........|++++|++.||+...-.+|.|+++|.+||.|||||+||
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRp 823 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRP 823 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCC
Confidence 99999999999999999999999999999999999888999999999999999999899999999999999999999999
Q ss_pred CCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 452 GRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 452 gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
||+|+.++.+.|++.+|.+|++.+....... ++.+++.+|..|+||+|+||..++-.|-+.|++++....+
T Consensus 824 GRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 824 GRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988877666 7899999999999999999999999999999988766444
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=336.03 Aligned_cols=229 Identities=40% Similarity=0.672 Sum_probs=214.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
.-.++|+||+|++++++++++.+..|++++++|..-+ .++++|||||||||||||++|||+|++.+.+||.|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3478999999999999999999999999999997433 678999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc--EEEEEecCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDK 796 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~--v~VI~aTN~~~~ 796 (957)
+|.|++++.++.+|..|...+||||||||+|+++..|+ ....++...+.++++..=||+....+ |+|++|||+|..
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 99999999999999999999999999999999999983 34457888889999999999976554 999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~ 872 (957)
+|.|++| |+.+.++|+.|+..+|.+|++..+++..+..++|+.++|..|+||||.||.++|+.|+...+++.+.
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999887653
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=354.55 Aligned_cols=251 Identities=41% Similarity=0.696 Sum_probs=232.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 717 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~ 717 (957)
.+.|.++|+||+|+++.++++.+++.+|+.+++.|+.+++.+++++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.+|+|+.+..++.+|..|+...|+||||||+|.++..+..... +.....+.+.+++..|+++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 9999999999999999999999999999999999877654322 222345667788999998877779999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
+|++++||||||+.|+|++|+.++|.+||+.++.++.+..++++..++..++||+|+||+++|++|++.|+++. ...|
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--r~~V 412 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER--RMKV 412 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886 6689
Q ss_pred CHHHHHHHHHhhCC
Q 002169 877 TMQHLKTAIRHVQP 890 (957)
Q Consensus 877 t~~d~~~al~~~~p 890 (957)
+.+||.+|+.++..
T Consensus 413 t~~D~~~A~~~v~~ 426 (438)
T PTZ00361 413 TQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998753
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=322.68 Aligned_cols=247 Identities=34% Similarity=0.576 Sum_probs=223.9
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
+..+.++|.++||.+++++.|++.+++|+.+ +.|.++|+.||++||||||||||||..||++|+..++.|+.+-+++++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 3456788999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
.+|+|+....++++|+.|+..+.||||+||+|++.+.|-+. +++..+|..-+|++.+|++..++++-|+++||+|+.
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999999887543 345566777778888999999999999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
+||||.||||+|+.++|..|+.+.|..||+.|.+.+... .+.-++.+|..+..-+|++|+++|.+|.|.|+|..++...
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairarrk~at 407 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVAT 407 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhh
Confidence 999999999999999999999999999999999998876 6777899999999999999999999999999987766555
Q ss_pred cccccccccccc
Q 002169 524 SSDVLHSTGTLF 535 (957)
Q Consensus 524 ~~~~~~~~~~~~ 535 (957)
..+++.+..+++
T Consensus 408 ekdfl~av~kvv 419 (435)
T KOG0729|consen 408 EKDFLDAVNKVV 419 (435)
T ss_pred HHHHHHHHHHHH
Confidence 555554444444
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=341.04 Aligned_cols=307 Identities=31% Similarity=0.478 Sum_probs=250.4
Q ss_pred hcCCccccc--cCChHHHH-HHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-cEEEEeCC
Q 002169 639 EVPKVKWED--VGGQREVK-TQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NFLAVKGP 714 (957)
Q Consensus 639 e~p~v~~~d--i~G~~~vk-~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-~~i~v~~~ 714 (957)
-.|+..|++ |+|++.-- ...+++...-.-.|+..+++|+..-+|+|||||||||||++||-|.+.++. +--.|+++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 346667776 57876544 445566666666789999999999999999999999999999999999975 55679999
Q ss_pred CcccccccchHHHHHHHHHHHHhC--------CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 715 ELFSKWVGESEKAVRSLFAKARAN--------APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~--------~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
+++++|+|+++.++|.+|+.|... .--||+|||||+++..|++..++.++.+.++||||..|||+++-.+++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEE
Confidence 999999999999999999998641 124999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC----CCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CSSDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~----~~~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
||+.|||.+.||+||+|||||...+++.+||+..|.+|+++|..++. +..|+|+.+||..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997753 56899999999999999999999999999
Q ss_pred HHHHHHHhcC-------------CCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhh
Q 002169 863 AISAIEENLD-------------ASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN 929 (957)
Q Consensus 863 ~~~a~~~~~~-------------~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 929 (957)
...|+.+.+. ...|+++||..|+..++|.-.-.-+.+.....+.++..-..... .-.-|..
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~------il~~G~l 525 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTR------ILDDGKL 525 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHH------HHhhHHH
Confidence 9999988652 33689999999999999982222233333333333222211111 0011222
Q ss_pred hhh-----ccCCceEEEeecccCCccc
Q 002169 930 MWT-----LIKSISLFLCRFPAGLSQS 951 (957)
Q Consensus 930 L~~-----~~k~~~~fl~~~~~~~g~~ 951 (957)
|-. ...+..|-|+.||.|+|||
T Consensus 526 lv~qvk~s~~s~lvSvLl~Gp~~sGKT 552 (744)
T KOG0741|consen 526 LVQQVKNSERSPLVSVLLEGPPGSGKT 552 (744)
T ss_pred HHHHhhccccCcceEEEEecCCCCChH
Confidence 322 2345568999999999998
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=307.19 Aligned_cols=288 Identities=28% Similarity=0.434 Sum_probs=239.3
Q ss_pred HHHHHHHHHHhhccCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCC
Q 002169 185 AIKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPP 264 (957)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~ 264 (957)
+.++.+..++.+..|-.+.+|+++-=.-.=.-..|.|.++.|. +..+++..|.+.+..+
T Consensus 49 n~~~F~~YArdQW~Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~---------------------~~~i~~st~i~vl~~~ 107 (368)
T COG1223 49 NPEVFNIYARDQWLGEVVREGDYLFDTRMFPDYAFKVIRVVPS---------------------GGGIITSTTIFVLETP 107 (368)
T ss_pred CHHHHHHHHHHhhcceeeecCceEeecccccccceeEEEEeCC---------------------CCceecceEEEEecCc
Confidence 5678888999999999999999873322222467899999886 3456666555554332
Q ss_pred cccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHH
Q 002169 265 LNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTS 344 (957)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTt 344 (957)
-. ... ......+++++.|.++.|...+=++++...++.|.+ -.|++||||||||||||+
T Consensus 108 ~~-~~~-----------------e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm 166 (368)
T COG1223 108 RE-EDR-----------------EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTM 166 (368)
T ss_pred ch-hhh-----------------hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHH
Confidence 11 100 112345789999999999999988888766676544 459999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC-chHHHHHHHHHHHHh
Q 002169 345 LARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-EELSQRMVATLLNLM 423 (957)
Q Consensus 345 LaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~-~~~~~~i~~~Ll~~l 423 (957)
+|+++|++.+.+++.+++.++++.++|+....++++|+.|...+|||+||||+|+++-.|.-.. ......+++.||+.|
T Consensus 167 ~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel 246 (368)
T COG1223 167 MAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL 246 (368)
T ss_pred HHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999987764322 223567899999999
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
|++....+++.|++||+++.||+++|+ ||..+|+|..|+.++|.+|++.+++.+++.+ +..++.++..+.||+|+||
T Consensus 247 Dgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 247 DGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred cCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCCchhH
Confidence 999999999999999999999999999 9999999999999999999999999999884 4559999999999999999
Q ss_pred HH-HHHHHHHHHHHH
Q 002169 504 AA-LCNEAALVCLRR 517 (957)
Q Consensus 504 ~~-l~~~A~~~a~rr 517 (957)
.. +++.|..+|+..
T Consensus 324 kekvlK~aLh~Ai~e 338 (368)
T COG1223 324 KEKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHHHh
Confidence 74 667777777653
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=351.82 Aligned_cols=251 Identities=43% Similarity=0.739 Sum_probs=230.2
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.|.++|+||+|++++|+++.+.+.+ +++++.+..++..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3456899999999999999999999887 789999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+.|+|...+.++.+|+.|+..+||||||||||.+...++.. ........++++++|.+||++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 999999999999999999999999999999999998877542 1223345688999999999998888899999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++||||||+.|+++.|+.++|.+|++.++++.+...+.++..+|..+.||+++||+++|++|+..|.++. ...
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--~~~ 282 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--KTE 282 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CCC
Confidence 999999999999999999999999999999999999888788899999999999999999999999999888765 567
Q ss_pred CCHHHHHHHHHhhCC
Q 002169 876 ITMQHLKTAIRHVQP 890 (957)
Q Consensus 876 It~~d~~~al~~~~p 890 (957)
|+.+||++|+.++..
T Consensus 283 i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 283 ITMNDIEEAIDRVIA 297 (495)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998753
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=335.33 Aligned_cols=229 Identities=38% Similarity=0.613 Sum_probs=210.7
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+..+|++|||++.+++.|++.+++|+.+ +.|..+|+.+++++|||||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 356678999999999999999999999887 7889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+|.|+.+..++.+|+.|....|+||||||+|.++.++.+.. +...++++.+|+..|+++....+++||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998774332 234567888899999998777889999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
||+++|+||||++|+|+.|+.++|.+|++.++.++.+. .+.+++.++..++||+|+||.++|++|++.|+++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999988766 67789999999999999999999999999998763
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=351.60 Aligned_cols=237 Identities=38% Similarity=0.608 Sum_probs=220.5
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
...+.|.|+.|+++.|++|.|+|.+...++.|.++|+..|+|+||+||||||||+||+|+|++.+.+|+.+++++++..+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34478999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC----CCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD----GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~----~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
.|....+++.+|..|+...|||+||||||++...|+. +++......++||+..||+....++++|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999998842 345566788999999999998888999999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccc
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 525 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~ 525 (957)
+|++||||||+.|.++.|+..+|.+|++.|+++.....++.++..+|.+|+||+|+||.++|++|+..|.|+........
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~ 544 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTK 544 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchh
Confidence 99999999999999999999999999999999998877888899999999999999999999999999999876655444
Q ss_pred c
Q 002169 526 D 526 (957)
Q Consensus 526 ~ 526 (957)
+
T Consensus 545 ~ 545 (774)
T KOG0731|consen 545 D 545 (774)
T ss_pred h
Confidence 3
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=354.06 Aligned_cols=447 Identities=22% Similarity=0.313 Sum_probs=309.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++++.|.+++++.+.+++ ......+++|+||||||||++|+++|..+ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVL------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHH------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 346788999999998777663 22345689999999999999999999887 67889999
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
+..+. .+|.|+.+.+++.+|+.+....|+||||||+|.+.+.+...++.. ...+.|...+ .++.+.+|++||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~--~~~~~L~~~l----~~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM--DASNLLKPAL----SSGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH--HHHHHHHHHH----hCCCeEEEEecC
Confidence 88887 468899999999999999877899999999999987654322211 1223344443 357899999999
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC----CCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~----~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+ +.|+++.| ||. .|.++.|+.+++.+|++.....+ ...+++..++.++..++.|.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi----------- 385 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI----------- 385 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc-----------
Confidence 743 57999999 996 59999999999999999766542 23344444444443332221
Q ss_pred HHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHH
Q 002169 511 ALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEI 590 (957)
Q Consensus 511 ~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (957)
. .|++|+++++++|++++.........
T Consensus 386 ---------~------------------------------~r~~P~kai~lld~a~a~~~~~~~~~-------------- 412 (731)
T TIGR02639 386 ---------N------------------------------DRFLPDKAIDVIDEAGASFRLRPKAK-------------- 412 (731)
T ss_pred ---------c------------------------------cccCCHHHHHHHHHhhhhhhcCcccc--------------
Confidence 1 35688888998888777554321110
Q ss_pred HhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchh-------hhhHHhhcCCccccccCChHHHHHHHHHHHh
Q 002169 591 ADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVE 663 (957)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~-------~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~ 663 (957)
....++.+|+.........-. ..+........-...|+||+++++.+.+.+.
T Consensus 413 ---------------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~ 471 (731)
T TIGR02639 413 ---------------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIK 471 (731)
T ss_pred ---------------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHH
Confidence 011244444444433321110 0112222333345678999999999988876
Q ss_pred chhhcHHHHHhcCC----CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc------------cccchHHH
Q 002169 664 WPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK------------WVGESEKA 727 (957)
Q Consensus 664 ~~~~~~~~~~~l~~----~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~------------~vg~~~~~ 727 (957)
+. +.|+ +|...+||+||+|||||++|++||..++.+++.++++++... |+|..+
T Consensus 472 ~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~-- 541 (731)
T TIGR02639 472 RS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ-- 541 (731)
T ss_pred HH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--
Confidence 42 1222 233348999999999999999999999999999999886432 344322
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCC---
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD--- 795 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~--- 795 (957)
...+.+.++....+||||||+|.+ ...+.+.|++.|+... ...+++||+|||...
T Consensus 542 ~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 542 GGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred hhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 223455556677789999999955 4567888999988531 123678999998642
Q ss_pred ----------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHH
Q 002169 796 ----------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIREL 843 (957)
Q Consensus 796 ----------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~l~~l 843 (957)
.+.|.++. |||.+|.|.+.+.++..+|++..+.+. ++. .+...+.|
T Consensus 609 ~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~L 686 (731)
T TIGR02639 609 SKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYL 686 (731)
T ss_pred hhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHH
Confidence 13567776 999999999999999999999887532 111 12224555
Q ss_pred HHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 002169 844 ACL--SEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 844 a~~--t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+.. ...|.+|.++.++++.....+.+
T Consensus 687 a~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 687 AEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 553 33556788888888777666554
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=363.34 Aligned_cols=263 Identities=20% Similarity=0.261 Sum_probs=209.3
Q ss_pred cHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc---------------------------
Q 002169 668 HQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW--------------------------- 720 (957)
Q Consensus 668 ~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~--------------------------- 720 (957)
......++|..+|+|+||+||||||||+||||+|+++++||+.|+++++++++
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34566788999999999999999999999999999999999999999988654
Q ss_pred --------------ccchHH--HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---c
Q 002169 721 --------------VGESEK--AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---Q 781 (957)
Q Consensus 721 --------------vg~~~~--~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---~ 781 (957)
++..+. .++.+|+.|++++||||||||||+++... .....+++|+.+|++.. .
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------cceehHHHHHHHhccccccCC
Confidence 122223 37999999999999999999999997541 11224789999999763 3
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH--hcCCCCCc-ccHHHHHHHccCCcHHHHHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL--RKIPCSSD-VNIRELACLSEGCTGADISLI 858 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l--~~~~~~~~-~~l~~la~~t~g~sg~dl~~l 858 (957)
..+|+||||||+|+.+||||+||||||+.|+++.|+..+|.+++..++ +++.+..+ +++..+|+.|.||+||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 458999999999999999999999999999999999999999988654 45555533 579999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-----------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh
Q 002169 859 CREAAISAIEENLDASRITMQHLKTAIRHVQPS-----------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG 927 (957)
Q Consensus 859 ~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~-----------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 927 (957)
|+||++.|+++. ...|+.++++.|+.++... ++..|+...+..+..+.+.+......... .
T Consensus 1850 vNEAaliAirq~--ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yEiGhAvvq~~L~~~~pv~kISIy~------~ 1921 (2281)
T CHL00206 1850 TNEALSISITQK--KSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCPIDPISIYM------K 1921 (2281)
T ss_pred HHHHHHHHHHcC--CCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhHHhHHHHHHhccCCCCcceEEEec------C
Confidence 999999999986 6789999999999876533 44467777777776666655544442111 1
Q ss_pred hhhhhccCCceEEEeecccCCc
Q 002169 928 SNMWTLIKSISLFLCRFPAGLS 949 (957)
Q Consensus 928 ~~L~~~~k~~~~fl~~~~~~~g 949 (957)
..+| +.-.+|++.|+.+.|
T Consensus 1922 ~~~~---r~~~~yl~~wyle~~ 1940 (2281)
T CHL00206 1922 KKSC---KEGDSYLYKWYFELG 1940 (2281)
T ss_pred Cccc---cCcccceeEeecCCc
Confidence 1234 223467888877765
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=329.80 Aligned_cols=250 Identities=48% Similarity=0.791 Sum_probs=228.5
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.|.+.|+|++|++++++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.+.++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
...|+|+....++.+|..|+...|+||||||+|.+...+.....+ .....+.+.+++.++++.....++.||+|||+++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999998766433221 2233466778888888876667899999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++|||||++.|+|+.|+.++|.+|++.++.+..+..++++..++..++||+|+|++++|++|++.|+++. ...
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~--~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE--RDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCc
Confidence 999999999999999999999999999999999999988888999999999999999999999999999999885 678
Q ss_pred CCHHHHHHHHHhh
Q 002169 876 ITMQHLKTAIRHV 888 (957)
Q Consensus 876 It~~d~~~al~~~ 888 (957)
|+.+||.+|+.++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
|
Many proteins may score above the trusted cutoff because an internal |
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=337.98 Aligned_cols=229 Identities=43% Similarity=0.697 Sum_probs=215.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
...+.|+++||++.+++.+++.+++++.+ +.|...++.+++++|||||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 34578899999999999999999999887 77777899999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
|+|++++.++.+|+.|+...||||||||+|++++.++........+++.+|+..|+++....+++||++||+++.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987766666899999999999999999999999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCC-CChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~-l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+||||||+.|+|+.|+.++|.+||+.++...... ..+.+++.++..+.||+|+||..+|++|++.++++.
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999976653 467899999999999999999999999999998763
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=310.01 Aligned_cols=245 Identities=39% Similarity=0.683 Sum_probs=223.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
.+++|+.++|...+..++++.++.|+.++++|.++|+.+|++++||||||||||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHH---HHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRV---MSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v---~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.|++.+-+|+.|..|+...|||||+||||++++.+.+... .....+ +-.|+++|++......|-+|+|||+|+.+
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~T--s~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT--SSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecccc--chhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 9999999999999999999999999999999988844322 233333 44566677777778899999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
||||+||||+|+.+.+|.|+...|..|++.+...+......+.+++.+..+||+|+|+++.|+||.+.|+.+. ...+-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~--~~~vl 362 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE--RDEVL 362 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh--hHHHh
Confidence 9999999999999999999999999999999999988888999999999999999999999999999998875 45567
Q ss_pred HHHHHHHHHhhC
Q 002169 878 MQHLKTAIRHVQ 889 (957)
Q Consensus 878 ~~d~~~al~~~~ 889 (957)
.++|..++.++.
T Consensus 363 ~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 363 HEDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHHH
Confidence 788888887654
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=337.71 Aligned_cols=450 Identities=20% Similarity=0.290 Sum_probs=295.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
-.++.+.|.++++..+.+++.. ....++||+||||||||++|+++|..+ +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3567899999999988887422 235678999999999999999999764 455666666
Q ss_pred cccc--ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 363 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 363 ~~l~--~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
..++ ..|.|+.+.+++.+|+.+....+.||||||+|.+++.+...+.. ..+ .+++..+...+.+.+|++|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~----~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDA----ANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHH----HHHHHHHHhCCCeEEEecCCh
Confidence 6665 35789999999999999887788999999999998776432221 122 223333335678999999998
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
++ ..|+++.| ||+ .|.++.|+.+++.+||+.+...+. ..+++..+...+..
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~l----------------- 384 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVEL----------------- 384 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-----------------
Confidence 65 57999999 996 699999999999999998765533 22233222222211
Q ss_pred HHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHH
Q 002169 512 LVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIA 591 (957)
Q Consensus 512 ~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (957)
..|+.. .+++|+++++++|++++..+..+.....
T Consensus 385 ---s~ryi~------------------------------~r~lPdKaidlldea~a~~~~~~~~~~~------------- 418 (758)
T PRK11034 385 ---AVKYIN------------------------------DRHLPDKAIDVIDEAGARARLMPVSKRK------------- 418 (758)
T ss_pred ---hhcccc------------------------------CccChHHHHHHHHHHHHhhccCcccccc-------------
Confidence 122221 3668888999998888766543211000
Q ss_pred hhcccCCCCCCCCCccccccccccccHHHHHHHHHhcC--ch-h----hhhHHhhcCCccccccCChHHHHHHHHHHHhc
Q 002169 592 DNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVR--PS-A----MREVILEVPKVKWEDVGGQREVKTQLMEAVEW 664 (957)
Q Consensus 592 ~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~--ps-~----~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~ 664 (957)
..++.+|+........ |. . ..+....+...--..|+||+++++.+.+++..
T Consensus 419 ----------------------~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~ 476 (758)
T PRK11034 419 ----------------------KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKM 476 (758)
T ss_pred ----------------------cccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHH
Confidence 0122222221111110 00 0 01111112222234689999999999998864
Q ss_pred hhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc------------ccccchHHHHHHHH
Q 002169 665 PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------------KWVGESEKAVRSLF 732 (957)
Q Consensus 665 ~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------------~~vg~~~~~ir~~f 732 (957)
....- . -..+|...+||+||||||||++|+++|..++.+|+.++++++.. .|+|.... ..+.
T Consensus 477 ~~~gl---~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~--g~L~ 550 (758)
T PRK11034 477 SRAGL---G-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLT 550 (758)
T ss_pred Hhccc---c-CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccccc--chHH
Confidence 21100 0 01233345999999999999999999999999999999987643 13332111 1233
Q ss_pred HHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCC---------
Q 002169 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRP--------- 794 (957)
Q Consensus 733 ~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~--------- 794 (957)
+..+....+||||||+|.+ ...+++.|++.|+... ...++++|+|||..
T Consensus 551 ~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~ 617 (758)
T PRK11034 551 DAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_pred HHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhccc
Confidence 4445566689999999965 4568888999998431 12477899999932
Q ss_pred ----------------CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-------CCCCCccc---HHHHHHHc-
Q 002169 795 ----------------DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCSSDVN---IRELACLS- 847 (957)
Q Consensus 795 ----------------~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-------~~~~~~~~---l~~la~~t- 847 (957)
..+.|+++. |+|.+|.|++.+.++..+|++..+.+ .++.-.++ ++.|+...
T Consensus 618 g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~ 695 (758)
T PRK11034 618 GLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGY 695 (758)
T ss_pred CcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCC
Confidence 124577877 99999999999999999998876642 23332222 34444332
Q ss_pred -cCCcHHHHHHHHHHHHHHHHHH
Q 002169 848 -EGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 848 -~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
..|.+|.++.++++-....+.+
T Consensus 696 ~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 696 DRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CCCCCCchHHHHHHHHHHHHHHH
Confidence 2344678887777666555443
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=324.97 Aligned_cols=229 Identities=38% Similarity=0.628 Sum_probs=208.7
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+..+|++|||++.+++.|++++.+++.+ +.|..+|+.+++++|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 345678999999999999999999999887 7788999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.|.|+.+..++.+|+.|....|+||||||+|.++.++... ++....+.+.+|+..|+++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999876432 2334456677888888888777889999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
|+++.|+||||+.|+|+.|+.++|.+||+.++.++... .+.+++.++..++||+|+||.++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888765 56789999999999999999999999999998764
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=330.01 Aligned_cols=250 Identities=39% Similarity=0.695 Sum_probs=211.5
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---------
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--------- 707 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~--------- 707 (957)
..+.|+++|+||+|++..++++++.+.+|+.++++|..+++.+++|+|||||||||||++||++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 35679999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred -EEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 708 -FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 708 -~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
|+.+++++++++|+|++++.++.+|..|+.. .|+||||||+|.++..|+... +.....+++++||.+||++...
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccccC
Confidence 6778889999999999999999999998864 699999999999998775432 2244578899999999999887
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-CCCCC---------cccHHHHHH-------
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-IPCSS---------DVNIRELAC------- 845 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-~~~~~---------~~~l~~la~------- 845 (957)
.+++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.+ .++.. ..+...+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34411 111222211
Q ss_pred ----------------------HccCCcHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHh
Q 002169 846 ----------------------LSEGCTGADISLICREAAISAIEENLD--ASRITMQHLKTAIRH 887 (957)
Q Consensus 846 ----------------------~t~g~sg~dl~~l~~eA~~~a~~~~~~--~~~It~~d~~~al~~ 887 (957)
.++.+||++|+++|.+|...|+++.+. ...|+.+|+..|+..
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 245678888888888888888877652 346888888887764
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.65 Aligned_cols=228 Identities=40% Similarity=0.648 Sum_probs=207.0
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+.+.|++|+|++++++.|++.+.+++.+ +.|..+|+.++++||||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 345678899999999999999999999887 8888999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.|.|+.+..++.+|+.+....|+||||||+|.+++.+.... .....+.+.+++..++++...+++.||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999998775443 223456667788888887777789999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
|++++||||||+.|+|+.|+.++|.+||+.+++++... .+.++..++..+.||+|+||.++|++|++.|+++
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999887765 4567999999999999999999999999999865
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=348.42 Aligned_cols=299 Identities=42% Similarity=0.719 Sum_probs=255.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|+||+|++++++.+.+.+.+|+.+++.++.+++.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
|.|++++.++.+|+.|....|+||||||+|.+...+... ......+++++|+..|+++.....++||++||+++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~--~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV--TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC--cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999998776433 234567899999999999988888999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-------
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------- 872 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~------- 872 (957)
+++|+|||++.++++.|+.++|.+|++.+.+.+++..+.++..++..+.||+++|+..+|++|+..++++...
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999999888899999999999999999999999999998876432
Q ss_pred ----------CCCCCHHHHHHHHHhhCCCc---------------hHHHHHHHHHHHHHhcCchhhhhcccccccchhhh
Q 002169 873 ----------ASRITMQHLKTAIRHVQPSE---------------IHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG 927 (957)
Q Consensus 873 ----------~~~It~~d~~~al~~~~p~~---------------~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 927 (957)
...++.+||..|+..+.|+. +..++..++.+++.+..+......+...
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~------- 482 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM------- 482 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc-------
Confidence 23578999999999988872 1234445555555544433322221110
Q ss_pred hhhhhccCCceEEEeecccCCcccc
Q 002169 928 SNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 928 ~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
. .++-...|+.||+|.|||.
T Consensus 483 ----g-~~~~~giLL~GppGtGKT~ 502 (733)
T TIGR01243 483 ----G-IRPPKGVLLFGPPGTGKTL 502 (733)
T ss_pred ----C-CCCCceEEEECCCCCCHHH
Confidence 1 1222357889999999983
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=338.89 Aligned_cols=245 Identities=40% Similarity=0.679 Sum_probs=225.3
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
+.++|+|++|++++++++.+.+.+ +++++.|..++...++|+||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 568999999999999999998876 7888999999999999999999999999999999999999999999999998889
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
+|.....++.+|+.|+..+||||||||+|.+...|+... ........++++||.+||+.....+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 998889999999999999999999999999987775432 2234456789999999999887889999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~ 879 (957)
+++||||||+.|++++|+.++|.+||+.++++..+..+.++..+|+.+.||+|+||+++|++|++.|.++. ...|+.+
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--~~~It~~ 414 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--KATITMK 414 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCCcCHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999988775 5679999
Q ss_pred HHHHHHHhh
Q 002169 880 HLKTAIRHV 888 (957)
Q Consensus 880 d~~~al~~~ 888 (957)
||++|+.++
T Consensus 415 dl~~Ai~rv 423 (638)
T CHL00176 415 EIDTAIDRV 423 (638)
T ss_pred HHHHHHHHH
Confidence 999999887
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=308.94 Aligned_cols=228 Identities=34% Similarity=0.574 Sum_probs=212.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l-~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
..++|++|||++.+++.+++.|.+|+++ +.|..- -..+++|||||||||||||++|+++|.+.|..|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 4578999999999999999999999988 555322 25699999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC--eEEEEecCCCCCchh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG--VLVIAATNRPDSIEP 446 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~--v~vI~ttN~~~~ld~ 446 (957)
|+|+.++.++.+|-.|...+|+||||||+|.++..|.....+....+.++|....|++...++ ++|+++||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999777778889999999999999966655 999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKI 521 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~ 521 (957)
|+.| |+.+.++|+.|+..+|.+||+.+++..... ++.++..+|..|.||+|+||..+|+.|++..+|.+...
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999 999999999999999999999999998877 88999999999999999999999999999999987764
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=318.18 Aligned_cols=267 Identities=37% Similarity=0.636 Sum_probs=237.1
Q ss_pred hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe
Q 002169 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 712 (957)
Q Consensus 633 ~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~ 712 (957)
+.++....+++.|+|+.|++.+|+.+.+.+.||...+++|..+ ..+.+++||+||||+|||+|++|||.|++..|..++
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 3455666788999999999999999999999999999999875 567789999999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEEe
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAA 790 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~a 790 (957)
++.+.++|+|++++.+|.+|.-|+..+|+|+||||+|+++..| .+.......++..++|...++.. ..++|+||+|
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 9999999999999999999999999999999999999999998 33445778899999999988764 3458999999
Q ss_pred cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 791 TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
||+|+.+|.|++| ||.+++|+|+|+.+.|..+|+..+.+.+.. .+.+++.+++.|+||++.||.++|.+|++.-++.
T Consensus 297 TN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 297 TNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred CCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 9999999999999 999999999999999999999999887433 5578999999999999999999999999866554
Q ss_pred hc-----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 870 NL-----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 870 ~~-----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
.. ....++..||+++++.++|+ ..+.|.+|...|.
T Consensus 375 ~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 375 LGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFG 424 (428)
T ss_pred cccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhc
Confidence 32 23568899999999999988 5667877776653
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=329.64 Aligned_cols=236 Identities=38% Similarity=0.622 Sum_probs=219.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
....|.|+-|.++.|+.+.++|.+...+..|..+|...|+||||+||||||||+|||++|++.+.+|+.+++++++..++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 34678899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
|-...++|.+|++|+..+|||+||||+|++...|+.+ +++..+..+++|+..||+.....++++|++||+|+-+|+|
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A 304 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA 304 (596)
T ss_pred CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHh
Confidence 9999999999999999999999999999999888533 3455667899999999999888899999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~ 527 (957)
|.||||||+.|.++.|+...|.+|++.|+++..+. .+.++..+|+.|.||+|+|+.+++++|+..|.|+........+.
T Consensus 305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i 383 (596)
T COG0465 305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDI 383 (596)
T ss_pred hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccch
Confidence 99999999999999999999999999999998888 78889999999999999999999999999999998776655443
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=339.14 Aligned_cols=249 Identities=43% Similarity=0.706 Sum_probs=226.9
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCC
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPE 715 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~ 715 (957)
..+.|++|+|++.++++++|.+..|+.+|+.|.++++.||+|+||+||||||||++|+++|..+ ...|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 5789999999999999999999999999999999999999999999999999999999999887 34677778999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+++|+|+.++.++.+|+.|+...|+|+|+||||.+++.|..... .....+++.||..|+|+..++.|+||+|||+++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 999999999999999999999999999999999999998854422 456789999999999999999999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc---
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL--- 871 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~--- 871 (957)
.+||||+||||||+.+||++|+.+.|.+|+.++.++..-. ...-+..+|..+.||-|+||+++|.+|++.++++..
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 9999999999999999999999999999999999987633 334578899999999999999999999999998753
Q ss_pred -----------CCCCCCHHHHHHHHHhhCCC
Q 002169 872 -----------DASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 872 -----------~~~~It~~d~~~al~~~~p~ 891 (957)
....|...||..|+.++.|+
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 12348899999999998876
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=317.57 Aligned_cols=221 Identities=26% Similarity=0.400 Sum_probs=195.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++|||++..|+.+++..... ......+|+.++++||||||||||||++|+++|++++.+++.+++..+.++|+|
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 356889999999999998765322 233456899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC-CCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhC
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD-GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~-~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r 450 (957)
+++.+++.+|+.|....||||||||+|.++.++.. +......+++.+|+.+|+. ...+++||+|||+++.+|++++|
T Consensus 302 ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 302 ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhC
Confidence 99999999999999999999999999999876433 2345678899999999986 35679999999999999999999
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHcCCCCC-CChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~-l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
+||||+.|+++.|+.++|.+||+.++.+.... ..+.+++.+|..|+||+|+||+++|.+|+..|..
T Consensus 380 ~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 380 KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886533 3577899999999999999999999999887753
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=327.75 Aligned_cols=246 Identities=39% Similarity=0.707 Sum_probs=225.7
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 721 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~v 721 (957)
...|+++.|.+..++.+.+.+.+ +..++.+..++...++|++|+||||||||++|+++|++++.+|+.++++++...++
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45789999999999999999887 56677788888899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChh
Q 002169 722 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 800 (957)
Q Consensus 722 g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~a 800 (957)
|.....++.+|..|+..+||||||||+|.+...|+.. +++.....++++++|.+||+.....+++||+|||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999998877543 222344567899999999999888899999999999999999
Q ss_pred hhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 002169 801 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 880 (957)
Q Consensus 801 Llr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d 880 (957)
++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.|.||+|+||.++|++|+..|.++. ...|+..|
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--~~~i~~~d 384 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVSMVE 384 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--CCcccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875 67899999
Q ss_pred HHHHHHhhCC
Q 002169 881 LKTAIRHVQP 890 (957)
Q Consensus 881 ~~~al~~~~p 890 (957)
|++|+.++.+
T Consensus 385 ~~~a~~~v~~ 394 (644)
T PRK10733 385 FEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHhc
Confidence 9999987754
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-33 Score=291.21 Aligned_cols=226 Identities=37% Similarity=0.615 Sum_probs=201.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
..++|+.+||+..++..+++.|++|+.+ +.+..+|+.+|++++||||||||||.+|+++|..+|++|+.+..+.+.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 4578999999999999999999999987 777888999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH---HHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM---VATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i---~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.||+.+.||+.|..|....||||||||||++.+.+...+....+.+ +-.|++.|++...-++|-+|+|||+|+.|+|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 9999999999999999999999999999999998865554444444 4455556666677788999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+|.||||+|+.+++|.|+...|+.|++.+...+... -+.+.+++.+..+||.|+|+...|++|.+-+++.
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999887765433 3445788889999999999999999998877654
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=323.71 Aligned_cols=481 Identities=21% Similarity=0.282 Sum_probs=297.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++++.|.++++.++.+++ ..+...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDIL------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHH------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 446788999999866666553 22334578999999999999999999876 24577777
Q ss_pred cccccc--cccchhHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVVS--QNYGESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~~--~~~ge~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...+.. .+.|+.+..++.+|+.+.. ..+.||||||+|.+.+.+...+.. ...+.|... ..++.+.+|++|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~----l~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPA----LARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHH----hhCCCeEEEEec
Confidence 777663 5789999999999998864 458899999999998765432211 111223333 356789999999
Q ss_pred CCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC----CCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 439 NRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 439 N~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~----~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..+ .+|++|+| ||. .|.++.|+.+++.+||+.+...+ ...+++..+..++..+.+|..
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~--------- 391 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP--------- 391 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc---------
Confidence 8753 58999999 995 69999999999999987666543 345567777766666655531
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchh-----
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLR----- 584 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 584 (957)
.|++|+++||++|++++..+............+.
T Consensus 392 -----------------------------------------~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~ 430 (852)
T TIGR03345 392 -----------------------------------------GRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAA 430 (852)
T ss_pred -----------------------------------------cccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2567777777777777655432111110000000
Q ss_pred --------------------------h-------cHHHHHhhcccCCCCC----------CCCCcc-cccc---------
Q 002169 585 --------------------------G-------TVSEIADNFHNGVSDS----------SGGMFM-SEKG--------- 611 (957)
Q Consensus 585 --------------------------~-------~~~~~~~~~~~~~~~~----------~~~~~~-~e~~--------- 611 (957)
. .+..+... |...... ..+... .+..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (852)
T TIGR03345 431 LELELDALEREAALGADHDERLAELRAELAALEAELAALEAR-WQQEKELVEAILALRAELEADADAPADDDAALRAQLA 509 (852)
T ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHH
Confidence 0 00000000 0000000 000000 0000
Q ss_pred ---------------ccccccHHHHHHHHHhcCc--h-hh----hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcH
Q 002169 612 ---------------CALKLELVDFEKARMKVRP--S-AM----REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQ 669 (957)
Q Consensus 612 ---------------~~~~v~~~df~~a~~~~~p--s-~~----~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~ 669 (957)
....|+..|+......... - .+ .+....+...--..|+||+++++.+.+.+.....
T Consensus 510 ~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~-- 587 (852)
T TIGR03345 510 ELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA-- 587 (852)
T ss_pred HHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc--
Confidence 0001122222111111000 0 00 0001111112224689999999999888854211
Q ss_pred HHHHhcC-CCCCCc-ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc------------ccccchHHHHHHHH
Q 002169 670 EAFKRIG-TRPPTG-ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS------------KWVGESEKAVRSLF 732 (957)
Q Consensus 670 ~~~~~l~-~~~~~g-iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~------------~~vg~~~~~ir~~f 732 (957)
.+. -..|.+ +||.||||||||.+|+++|..+ ...++.++++++.. .|+|..+.. .+.
T Consensus 588 ----gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~ 661 (852)
T TIGR03345 588 ----GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLT 661 (852)
T ss_pred ----CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHH
Confidence 111 122333 8999999999999999999988 45789999877632 255543322 234
Q ss_pred HHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCC--------
Q 002169 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD-------- 795 (957)
Q Consensus 733 ~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~-------- 795 (957)
...+....+||+||||+. +...+.+.|++.++... ...+.+||+|||...
T Consensus 662 ~~v~~~p~svvllDEiek-------------a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~ 728 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEK-------------AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCA 728 (852)
T ss_pred HHHHhCCCcEEEEechhh-------------cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhcc
Confidence 555667789999999984 35677888888887542 124788999998421
Q ss_pred ---------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC--------CCC---CcccHHHH
Q 002169 796 ---------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--------PCS---SDVNIREL 843 (957)
Q Consensus 796 ---------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~--------~~~---~~~~l~~l 843 (957)
...|+++. |++ +|.|.+++.++..+|++..+.+. ++. ++...+.|
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~L 805 (852)
T TIGR03345 729 DPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHI 805 (852)
T ss_pred CcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHH
Confidence 13567777 997 88999999999999998776432 332 12224556
Q ss_pred HHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 002169 844 ACLSE--GCTGADISLICREAAISAIEE 869 (957)
Q Consensus 844 a~~t~--g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+.... .|.+|.++.+++.-....+.+
T Consensus 806 a~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 806 VARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 66553 355889998888766655544
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=323.50 Aligned_cols=477 Identities=22% Similarity=0.280 Sum_probs=303.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
.-.++.+.|.+++++++.+++ ......+++|+||||||||++|+.+|..+ +..++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L------------~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQIL------------GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHH------------cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 345788999999999999883 33456689999999999999999999876 46789999
Q ss_pred cccccc--cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 362 GPEVVS--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 362 ~~~l~~--~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
...++. +|.|+.+.+++.+|+.+....+.||||||+|.+.+.+...++. .+.+.|. ..-.++.+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLk----p~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILK----PALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhH----HHHhCCCcEEEEeCC
Confidence 888773 6889999999999999987788999999999998765433221 1222222 323467899999999
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+ ..++++.+ ||.. |.++.|+.++...|++..... ....++++.+..++..+.+|.+
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~---------- 382 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA---------- 382 (821)
T ss_pred HHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc----------
Confidence 764 47899999 9964 899999999999998865432 2333556666655555554431
Q ss_pred HHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHH
Q 002169 511 ALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEI 590 (957)
Q Consensus 511 ~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (957)
.|++|+++++++|++++..+......+.....+...+..+
T Consensus 383 ----------------------------------------~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~ 422 (821)
T CHL00095 383 ----------------------------------------DRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREI 422 (821)
T ss_pred ----------------------------------------cccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 2566777777777776655432211111111000000000
Q ss_pred Hhh--------------------------------cccCCCCCCCCCccccccccccccHHHHHHHHHhcCchh---h--
Q 002169 591 ADN--------------------------------FHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA---M-- 633 (957)
Q Consensus 591 ~~~--------------------------------~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~---~-- 633 (957)
... .|..... .......++.+|+.........-. +
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~ 494 (821)
T CHL00095 423 LKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEE--------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTK 494 (821)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------ccccCCccCHHHHHHHHHHHHCCCchhhch
Confidence 000 0000000 000112355555544333222111 1
Q ss_pred --hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcE
Q 002169 634 --REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNF 708 (957)
Q Consensus 634 --~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~ 708 (957)
.+-...+...--..|+||+++++.+..++...... +. -.-+|...+||+||+|||||++|++||..+ ..++
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g---l~-~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~ 570 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG---LK-NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAM 570 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc---cc-CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccce
Confidence 01111222222356899999999998888542110 00 011222348999999999999999999987 4689
Q ss_pred EEEeCCCcccc------------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 709 LAVKGPELFSK------------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 709 i~v~~~~l~~~------------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
+.++++++... |+|..+ ...+.+.++....+|++|||+|.+ ...+.+.|++.|
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-------------~~~v~~~Llq~l 635 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-------------HPDIFNLLLQIL 635 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-------------CHHHHHHHHHHh
Confidence 99998876421 333322 123555666666689999999954 567888899998
Q ss_pred hccc---------cCCcEEEEEecCCCCC-------------------------------------CChhhhCCCCccee
Q 002169 777 DGLH---------QRVNVTVIAATNRPDK-------------------------------------IDPALLRPGRFDRL 810 (957)
Q Consensus 777 d~~~---------~~~~v~VI~aTN~~~~-------------------------------------id~aLlr~gRfd~~ 810 (957)
+... ...+.++|+|||.... ..|.++. |+|.+
T Consensus 636 e~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~i 713 (821)
T CHL00095 636 DDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEI 713 (821)
T ss_pred ccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeE
Confidence 8531 1347889999985311 1355666 99999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC-------CCCCcc---cHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 002169 811 LYVGPPNETDREEIFRIHLRKI-------PCSSDV---NIRELACL--SEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 811 i~~~~P~~~er~~Il~~~l~~~-------~~~~~~---~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
|.|.+.+.++..+|++..+.+. ++.-.. ..+.|+.. ...|.+|.|+.++++-....+.+
T Consensus 714 i~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 714 IVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999988777542 222111 23445543 12344677777777655544433
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=297.72 Aligned_cols=228 Identities=40% Similarity=0.659 Sum_probs=203.7
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
.+.+.|++|+|++++++.|++.+.+++.+ +.+..+|+.+++++|||||||||||++|+++|++++.+++.+.+.++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 45678899999999999999999998776 77889999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
+.|+....++.+|+.+....|+||||||+|.+...+.... .....+.+.+++..++++...+++.||+|||+++.+|
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999987765432 2233456677777788776667899999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
++++|+||||+.|+|+.|+.++|.+|++.++..+... .+.+++.++..+.||+|+||.++|++|++.|+++.
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999887654 44678999999999999999999999999998763
|
Many proteins may score above the trusted cutoff because an internal |
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=313.22 Aligned_cols=229 Identities=38% Similarity=0.626 Sum_probs=207.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++++|++.+++.+++++.+....+.+..++..+++++||+||||||||++|+++|++++.+++.++++++...+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 129 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence 34678999999999999999998854457788899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
|+.+..++.+|+.|....|+||||||+|.++.+++.+ ......+++++|+..||++....+++||++||+++.+||+
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~a 209 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPA 209 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHH
Confidence 9999999999999999999999999999999877652 2345567889999999999888899999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
++||||||+.|+++.|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|+..+.++...
T Consensus 210 l~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 210 LLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred HhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999887655 6678999999999999999999999999888776543
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=309.40 Aligned_cols=478 Identities=22% Similarity=0.288 Sum_probs=317.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
-.++.++|-++++.++.+++ ..+...+-+|+|+||+|||.++..+|... +..++.++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL------------~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQIL------------SRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHH------------hccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 45788999999999988884 33445567899999999999999999765 456788887
Q ss_pred ccccc--cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 363 PEVVS--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 363 ~~l~~--~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
..++. +|.|+.|.+++.+++.+....+.||||||+|.+.+.....++ ... .-+++.....++...+|++|+.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~D----AaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMD----AANLLKPALARGELRCIGATTL 308 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccc----hhhhhHHHHhcCCeEEEEeccH
Confidence 77766 488999999999999999888999999999999877654331 111 2233333335788899999976
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
-+ +-|+||.| ||.. |.+..|+.++-..||+.+...+. ..+++..+. |+
T Consensus 309 ~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~--------------------aA 365 (786)
T COG0542 309 DEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALV--------------------AA 365 (786)
T ss_pred HHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHH--------------------HH
Confidence 44 56899999 9955 89999999999999997655432 222333222 22
Q ss_pred HHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHH
Q 002169 512 LVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIA 591 (957)
Q Consensus 512 ~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (957)
..-..|+.. +|++|+++||++|+++++...... .+.....+...+..+.
T Consensus 366 v~LS~RYI~------------------------------dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~ 414 (786)
T COG0542 366 VTLSDRYIP------------------------------DRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLE 414 (786)
T ss_pred HHHHHhhcc------------------------------cCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHH
Confidence 222334433 488999999999999999876433 2222111111111111
Q ss_pred hhcccCCCCCC--C------------CCccc--cccccccccHHHHHHHHHhcC---chh----hhhHHhhcCCcccccc
Q 002169 592 DNFHNGVSDSS--G------------GMFMS--EKGCALKLELVDFEKARMKVR---PSA----MREVILEVPKVKWEDV 648 (957)
Q Consensus 592 ~~~~~~~~~~~--~------------~~~~~--e~~~~~~v~~~df~~a~~~~~---ps~----~~~~~~e~p~v~~~di 648 (957)
.....-..+.. . +.++. ..... .|+.+++......+. ... -++.....+..--..|
T Consensus 415 ~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rV 493 (786)
T COG0542 415 IEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRV 493 (786)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcce
Confidence 10000000000 0 00000 00000 144444444333222 111 1233334444455679
Q ss_pred CChHHHHHHHHHHHhchhhcHHHHHhcCC----CCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccc--
Q 002169 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK-- 719 (957)
Q Consensus 649 ~G~~~vk~~l~e~i~~~~~~~~~~~~l~~----~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~-- 719 (957)
+||++++..+..+|... +.|+ +|-..+||.||+|+|||.+||+||..+. ..+++++++++..+
T Consensus 494 iGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 494 IGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred eChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHH
Confidence 99999999999988632 2233 3333589999999999999999999986 79999999998653
Q ss_pred ----------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------
Q 002169 720 ----------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 780 (957)
Q Consensus 720 ----------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------- 780 (957)
|||..+.. .+-+.++....|||+||||+ +++..+++-||+.||.-.
T Consensus 566 VSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIE-------------KAHpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIE-------------KAHPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred HHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhh-------------hcCHHHHHHHHHHhcCCeeecCCCCEE
Confidence 77765533 36667777778999999998 578899999999998642
Q ss_pred cCCcEEEEEecCCCC----------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC
Q 002169 781 QRVNVTVIAATNRPD----------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI 832 (957)
Q Consensus 781 ~~~~v~VI~aTN~~~----------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~ 832 (957)
...+.+||+|||--. ...|+++. |+|.+|.|.+.+.+...+|++..+.+.
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 124789999998321 02567777 999999999999999999998777532
Q ss_pred -------CCCCc---ccHHHHHHHcc--CCcHHHHHHHHHHHHHHHHH
Q 002169 833 -------PCSSD---VNIRELACLSE--GCTGADISLICREAAISAIE 868 (957)
Q Consensus 833 -------~~~~~---~~l~~la~~t~--g~sg~dl~~l~~eA~~~a~~ 868 (957)
++.-. ...+.++...- .|.+|-++.++++-....+.
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHH
Confidence 22211 12344444332 45577777777765544443
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=302.23 Aligned_cols=190 Identities=34% Similarity=0.628 Sum_probs=171.8
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------E
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------L 357 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------~ 357 (957)
..+..+|++|||++++++.|++.|.+++.+ +.|..+|+.+++++|||||||||||++|+++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 345678999999999999999999999877 88889999999999999999999999999999998644 5
Q ss_pred EEEecccccccccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCC-CchHHHHHHHHHHHHhhccccCCCe
Q 002169 358 FTVNGPEVVSQNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDG-GEELSQRMVATLLNLMDGVCRTDGV 432 (957)
Q Consensus 358 i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~-~~~~~~~i~~~Ll~~ld~l~~~~~v 432 (957)
+.+.++++.++|.|+++..++.+|+.+... .|+||||||+|.+++.++.+ .++...+++.+|++.||++...+++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677888999999999999999999988753 69999999999999887654 3456678899999999999877899
Q ss_pred EEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 433 LVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 433 ~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
+||+|||+++.|||+++||||||++|+|+.|+.++|.+||+.++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998864
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=312.62 Aligned_cols=485 Identities=21% Similarity=0.293 Sum_probs=299.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++.+.|.++++.++.+++ ..+...+++|+||||||||++++.+|..+ +.+++.++
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVL------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHH------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 345778999999877777763 23345678999999999999999999875 56788888
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...+. .+|.|+.+..++.+|+.+... .|.||||||+|.+.+.+...+. ....+ .+......+.+.+|++|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~----~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGN----MLKPALARGELHCIGAT 309 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHH----HhchhhhcCceEEEEeC
Confidence 77775 457899999999999988653 5899999999999865433221 11222 22333356789999999
Q ss_pred CCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 439 NRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 439 N~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..+ .+|+++.| ||.. |.++.|+.+++..|++.+...+. ..+.+..+...+..+++|.
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi---------- 376 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI---------- 376 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc----------
Confidence 9864 57999999 9964 89999999999999998766543 2334444444444433332
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcH--
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTV-- 587 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 587 (957)
..|++|++++|++|++++.++......+.....+...+
T Consensus 377 ----------------------------------------~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~ 416 (852)
T TIGR03346 377 ----------------------------------------TDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQ 416 (852)
T ss_pred ----------------------------------------cccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 13678888888888888766542111111000000000
Q ss_pred ---------------------------HHHHhh------cccCCCCC----------------------CC---------
Q 002169 588 ---------------------------SEIADN------FHNGVSDS----------------------SG--------- 603 (957)
Q Consensus 588 ---------------------------~~~~~~------~~~~~~~~----------------------~~--------- 603 (957)
..+... .|...... ..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (852)
T TIGR03346 417 LEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAEL 496 (852)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 000000 00000000 00
Q ss_pred --CCccc-----------------cccccccccHHHHHHHHHhcC--chh-----hhhHHhhcCCccccccCChHHHHHH
Q 002169 604 --GMFMS-----------------EKGCALKLELVDFEKARMKVR--PSA-----MREVILEVPKVKWEDVGGQREVKTQ 657 (957)
Q Consensus 604 --~~~~~-----------------e~~~~~~v~~~df~~a~~~~~--ps~-----~~~~~~e~p~v~~~di~G~~~vk~~ 657 (957)
+.+.. +......++.+|+........ |.. ..+........-...|+|++.+++.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~ 576 (852)
T TIGR03346 497 QYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEA 576 (852)
T ss_pred hhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHH
Confidence 00000 000000122222222222110 000 0011111122234568999999999
Q ss_pred HHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc------------ccc
Q 002169 658 LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVG 722 (957)
Q Consensus 658 l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~------------~vg 722 (957)
+.+.+...... +. -..+|...+||+||+|||||++|++||..+ +.+++.++++++... |+|
T Consensus 577 v~~~i~~~~~g---l~-~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g 652 (852)
T TIGR03346 577 VSDAIRRSRAG---LS-DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVG 652 (852)
T ss_pred HHHHHHHHhcc---CC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccC
Confidence 98887632100 00 011234458999999999999999999986 468999999876432 233
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCC
Q 002169 723 ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNR 793 (957)
Q Consensus 723 ~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~ 793 (957)
..+. ..+....+....+|||||||+.+ ...+++.|++.|+... ...+.+||+|||.
T Consensus 653 ~~~~--g~l~~~v~~~p~~vlllDeieka-------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 653 YEEG--GQLTEAVRRKPYSVVLFDEVEKA-------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cccc--cHHHHHHHcCCCcEEEEeccccC-------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 2221 22344445555679999999944 5677888999886431 1246789999997
Q ss_pred CCC-------------------------CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-------CCCC---Ccc
Q 002169 794 PDK-------------------------IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS---SDV 838 (957)
Q Consensus 794 ~~~-------------------------id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-------~~~~---~~~ 838 (957)
... ..|.|+. |+|.++.|.+++.++..+|+...+.. .++. .+.
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~ 795 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDA 795 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHH
Confidence 321 2456666 99999999999999999988876642 2222 222
Q ss_pred cHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 002169 839 NIRELACLSE--GCTGADISLICREAAISAIEE 869 (957)
Q Consensus 839 ~l~~la~~t~--g~sg~dl~~l~~eA~~~a~~~ 869 (957)
.++.|+...- .+..|.+++++++.....+.+
T Consensus 796 a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 796 ALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 3455665422 456899999998887766654
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=309.93 Aligned_cols=485 Identities=21% Similarity=0.286 Sum_probs=293.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++.+.|.+.++.++.+++ ......+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVL------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHH------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 345788999999877777763 23345679999999999999999999887 67888888
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...++ .+|.|+.+.+++.+|+.+.. ..++||||||+|.+.+.+...++. ...+.|. ....++.+.+|++|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~lk----p~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLK----PALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHhc----chhhcCCCeEEEcC
Confidence 87776 35789999999999998643 568999999999998765433221 1122222 33356889999999
Q ss_pred CCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 439 NRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 439 N~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..+ ++|+++.| ||+. |.++.|+.+++..|++.+...+. +.+.+..+...+..+++|.
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~---------- 381 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI---------- 381 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc----------
Confidence 9876 48999999 9974 88999999999999988765532 2334444433333333222
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHH
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSE 589 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (957)
. .+++|+++++++|..++.........+.....+...+..
T Consensus 382 ----------~------------------------------~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~ 421 (857)
T PRK10865 382 ----------A------------------------------DRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQ 421 (857)
T ss_pred ----------c------------------------------CCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHH
Confidence 1 367888889988888888765432211111100000000
Q ss_pred HHhhc-----------------------------------ccCCCCCCCC--Ccccccc---------------------
Q 002169 590 IADNF-----------------------------------HNGVSDSSGG--MFMSEKG--------------------- 611 (957)
Q Consensus 590 ~~~~~-----------------------------------~~~~~~~~~~--~~~~e~~--------------------- 611 (957)
+.... |.......++ ....+..
T Consensus 422 L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~ 501 (857)
T PRK10865 422 LKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSEL 501 (857)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHh
Confidence 00000 0000000000 0000000
Q ss_pred -------------------------ccccccHHHHHHHHHhcC--chh-----hhhHHhhcCCccccccCChHHHHHHHH
Q 002169 612 -------------------------CALKLELVDFEKARMKVR--PSA-----MREVILEVPKVKWEDVGGQREVKTQLM 659 (957)
Q Consensus 612 -------------------------~~~~v~~~df~~a~~~~~--ps~-----~~~~~~e~p~v~~~di~G~~~vk~~l~ 659 (957)
....|+.+|+........ |-. ..+....+...-...++|++.+++.+.
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~ 581 (857)
T PRK10865 502 QYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVS 581 (857)
T ss_pred hhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHH
Confidence 000012222111111100 000 001111222233456889999999998
Q ss_pred HHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc------------cccch
Q 002169 660 EAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGES 724 (957)
Q Consensus 660 e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~------------~vg~~ 724 (957)
..+...... +. -.-+|...++|+||+|||||++|++||..+ +.+++.++++++... |+|..
T Consensus 582 ~~i~~~~~g---l~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~ 657 (857)
T PRK10865 582 NAIRRSRAG---LS-DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYE 657 (857)
T ss_pred HHHHHHHhc---cc-CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccc
Confidence 888542100 00 001222358999999999999999999886 457999998776432 22222
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCC
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD 795 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~ 795 (957)
+. ..+....+....+||||||++.+ ...+++.|++.|+... ...+.+||+|||...
T Consensus 658 ~~--g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~ 722 (857)
T PRK10865 658 EG--GYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGS 722 (857)
T ss_pred hh--HHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcch
Confidence 21 11223333444489999999854 4567788888886421 123567899999631
Q ss_pred -------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCCCccc---H
Q 002169 796 -------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCSSDVN---I 840 (957)
Q Consensus 796 -------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~~~~~---l 840 (957)
...|+|+. |+|.++.|.+++.++..+|++.++.+. ++.-.++ +
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al 800 (857)
T PRK10865 723 DLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800 (857)
T ss_pred HHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHH
Confidence 23578887 999999999999999998888777542 2222233 3
Q ss_pred HHHHHHc--cCCcHHHHHHHHHHHHHHHHHH
Q 002169 841 RELACLS--EGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 841 ~~la~~t--~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+.|+... ..|.+|.|+.+++.-+...+.+
T Consensus 801 ~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred HHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 3343321 1233678888888766655544
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=306.89 Aligned_cols=230 Identities=37% Similarity=0.599 Sum_probs=207.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++++|+++.++.+.+++.+....+.|..++...++++||+||||||||++|+++|++++.+++.++++++...+.|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 45789999999999999999988655677888999999999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....++.+|+.|....||||||||+|.++..++.+ .+......+.+|+..||++....+++||++||+++.+|+++
T Consensus 259 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~AL 338 (638)
T CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAAL 338 (638)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhh
Confidence 888899999999999999999999999998776432 23455678899999999987788999999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQ 522 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~ 522 (957)
+||||||+.|.++.|+.++|.+|++.+++..... .+.++..+|..+.||+|+||..+|++|+..+.++.....
T Consensus 339 lRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~I 411 (638)
T CHL00176 339 LRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATI 411 (638)
T ss_pred hccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999885544 677899999999999999999999999998887755433
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=277.54 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=178.8
Q ss_pred cccccc-CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 293 QDISKL-GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 293 ~~~~~i-~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
.+|+++ ||+--...-+..++ ....+..+..+++++|.+++||||||||||++|+++|++++.+++.++++++.++|+|
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~-~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVA-VHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred cchhhhcCccccCHHHHHHHH-HHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 456666 77765555555443 3334455556889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHHHHH-HHHHHHhhcc------------ccCCCeE
Q 002169 372 ESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMV-ATLLNLMDGV------------CRTDGVL 433 (957)
Q Consensus 372 e~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~-~~Ll~~ld~l------------~~~~~v~ 433 (957)
|+++.++++|+.|.. .+||||||||||++++.++..+.....+++ .+|+++||+. ....++.
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999875 469999999999999998755555545554 8999999863 2356799
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC----CcHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG----FVGADLAALCNE 509 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g----~~gaDi~~l~~~ 509 (957)
||+|||+|+.|||+|+|+||||+.+ +.|+.++|.+|++.++++..+ +..++..|+..+.| |.|+--..+..+
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~ 346 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQPLDFFGALRARVYDD 346 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999954 689999999999999998654 57889999998876 566655555555
Q ss_pred HHHHHHHH
Q 002169 510 AALVCLRR 517 (957)
Q Consensus 510 A~~~a~rr 517 (957)
+....+.+
T Consensus 347 ~v~~~i~~ 354 (413)
T PLN00020 347 EVRKWIAE 354 (413)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=279.84 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=170.6
Q ss_pred Ccccccc-CChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 642 KVKWEDV-GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 642 ~v~~~di-~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
..+|+++ +|..-.+.-+.......- ...+...++++|.+++||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3456666 444433433333322111 1122336789999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH-HHHHHHHhcc------------ccC
Q 002169 721 VGESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM-SQLLVELDGL------------HQR 782 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~-~~LL~~ld~~------------~~~ 782 (957)
+|++++.+|++|..|.. .+||||||||||++++.++. .+..+..+++ .+|+++||+. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 57999999999999998863 2334445565 7999999863 235
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC----CcHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG----CTGADISLI 858 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g----~sg~dl~~l 858 (957)
.+|.||+|||+|+.|||+|+||||||+.+ ..|+.++|.+|++.++++.++. ..++..|+..+.| |.|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 57999999999999999999999999865 5899999999999999998776 5788888888876 445444444
Q ss_pred HHHHHHHHHH
Q 002169 859 CREAAISAIE 868 (957)
Q Consensus 859 ~~eA~~~a~~ 868 (957)
..++....+.
T Consensus 344 yd~~v~~~i~ 353 (413)
T PLN00020 344 YDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=288.71 Aligned_cols=227 Identities=35% Similarity=0.557 Sum_probs=208.3
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
....+.|+++.|++..++.+.+++.+|..+ ..|. ---.+.+++||.||||+|||+|++++|.+.++.|+.++++++.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~-glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL-GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhh-ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 345578999999999999999999999876 4443 33467889999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccCCCeEEEEecCCCCCch
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~~~v~vI~ttN~~~~ld 445 (957)
+|+|+.++.++.+|+-|+..+|+|+||||+|.++.+|.+...+.++++..+++..+++. ...++++||+|||+|+++|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 99999999999999999999999999999999999997777888899999999888886 3456799999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
.+++| ||.+.++|+.|+.+.|..+++.++...++.+.+.+++.+++.|+||+|.||.++|++|++.-.+..
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 99999 999999999999999999999999998888999999999999999999999999999988776654
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=316.02 Aligned_cols=201 Identities=24% Similarity=0.334 Sum_probs=168.6
Q ss_pred hhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc----------cc------------------
Q 002169 320 TLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN----------YG------------------ 371 (957)
Q Consensus 320 ~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~----------~g------------------ 371 (957)
....+|+.+++||||+||||||||.|||++|++.+++|+.|++++++..+ +|
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 33578899999999999999999999999999999999999999998654 11
Q ss_pred -------------hh--HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---cCCCeE
Q 002169 372 -------------ES--EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---RTDGVL 433 (957)
Q Consensus 372 -------------e~--e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---~~~~v~ 433 (957)
+. ..+++.+|+.|++++||||||||||+++.+.. ....+.+|++.|++.. ...+++
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCEE
Confidence 12 23589999999999999999999999986521 1123788999999763 356899
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc--CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS--GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~--~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
||||||+|+.||||++||||||+.|.++.|+..+|.+++..++. +....-...+++.+|..|.||+||||+++|++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886543 3443323356899999999999999999999999
Q ss_pred HHHHHHhcccccccc
Q 002169 512 LVCLRRYSKIQTSSD 526 (957)
Q Consensus 512 ~~a~rr~~~~~~~~~ 526 (957)
+.|+++....++..+
T Consensus 1855 liAirq~ks~Id~~~ 1869 (2281)
T CHL00206 1855 SISITQKKSIIDTNT 1869 (2281)
T ss_pred HHHHHcCCCccCHHH
Confidence 999998766555543
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=297.97 Aligned_cols=229 Identities=35% Similarity=0.606 Sum_probs=206.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
..|+++.|++..++.+.+++.+......+..++...+++++|+||||||||++++++|++++.+|+.++++++...+.|.
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~ 228 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcc
Confidence 45778999999999999999887555667778888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
....++.+|+.+....|+||||||+|.++..+..+ +.....+++++|+..||++....+++||++||+++.+|++++
T Consensus 229 ~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~ 308 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 308 (644)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHh
Confidence 99999999999999999999999999999877542 234556788999999999988889999999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccc
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQ 522 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~ 522 (957)
||||||+.|.|+.|+.++|.+|++.++++.++. .+.++..++..+.||+|+||.++|++|+..|.++.....
T Consensus 309 RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i 380 (644)
T PRK10733 309 RPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 380 (644)
T ss_pred CCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999987765 566788999999999999999999999999988654433
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=255.92 Aligned_cols=286 Identities=19% Similarity=0.261 Sum_probs=215.3
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
.+-.+++++|+++..+.+.+.+. .+...+++|+||||||||++|+++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 45578899999999988776653 3345689999999999999999999987 678889
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
++...+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.+...++ ...+.+.|...|. ++.+.+|
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~----~~~~~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG----SMDASNLLKPALS----SGKLRCI 315 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc----cHHHHHHHHHHHh----CCCeEEE
Confidence 9988887 4799999999999999998878999999999999866432221 1223344444444 5689999
Q ss_pred EecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC-----CCcccHHHHHHHccCCc-----HH
Q 002169 789 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC-----SSDVNIRELACLSEGCT-----GA 853 (957)
Q Consensus 789 ~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~-----~~~~~l~~la~~t~g~s-----g~ 853 (957)
+|||..+ .+|+|+.| ||. .|+++.|+.+++.+|++.....+.- ..+..+..++..+..|- ++
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999743 47999999 996 7999999999999999977765321 13445667777776664 45
Q ss_pred HHHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccc
Q 002169 854 DISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPS 923 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~ 923 (957)
....++++|+.....+. .....|+.+|+..++.....- +...+..+.+.+++.+++++.+... .....
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~--l~~~i 470 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDS--LVSSI 470 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHH--HHHHH
Confidence 56778888776443221 123469999999999886422 5678889999999999999877443 22222
Q ss_pred hhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 924 KSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 924 ~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
......+-...|+.++|||.||+|+||||
T Consensus 471 ~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 471 KRSRAGLGNPNKPVGSFLFTGPTGVGKTE 499 (731)
T ss_pred HHHhcCCCCCCCCceeEEEECCCCccHHH
Confidence 22223355677899999999999999996
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=219.24 Aligned_cols=251 Identities=22% Similarity=0.325 Sum_probs=189.1
Q ss_pred hcCCccccccCChHHHHH---HHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 639 EVPKVKWEDVGGQREVKT---QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~---~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
...+.++++++||+++.. .|.++++ .....+++|||||||||||+|++||+..+.+|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 445678899999998873 3444443 234567999999999999999999999999999998743
Q ss_pred cccccccchHHHHHHHHHHHHhCC----CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 716 LFSKWVGESEKAVRSLFAKARANA----PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~----p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
.+.+.+|.++++|+... ..|||+||||++.... +..||-.|+ .+.+++|+||
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------------QD~lLp~vE----~G~iilIGAT 139 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------------QDALLPHVE----NGTIILIGAT 139 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------------hhhhhhhhc----CCeEEEEecc
Confidence 36788999999996533 4799999999986543 234777776 5578889887
Q ss_pred --CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHh--cCCCC------CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 792 --NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCS------SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 792 --N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~--~~~~~------~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
|....+++||++ |+ +++.+.+.+.++..++++..+. +.++. ++...+.++..+.| |.+.+++-
T Consensus 140 TENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 140 TENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred CCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 555679999999 76 4888999999999999988443 33333 33456778888888 66666654
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhcc
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLI 934 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~ 934 (957)
.-+.+..... ...+..+.+++.+.+..+. ..+.++++...|+|++++++.++.+||..|+.......+|-.+
T Consensus 213 LE~~~~~~~~-~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiAR 287 (436)
T COG2256 213 LELAALSAEP-DEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIAR 287 (436)
T ss_pred HHHHHHhcCC-CcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHH
Confidence 3333332221 2244588888888886664 5678899999999999999999999999999887776666443
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=244.80 Aligned_cols=285 Identities=19% Similarity=0.235 Sum_probs=210.1
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v 711 (957)
.-.++.++|.++..+++.+.+.. +...++||+||||||||++|+++|... +..++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 44677899999999888876642 345678999999999999999999764 4556666
Q ss_pred eCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 712 KGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 712 ~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+...++ .+|.|+++..++.+|..+....++||||||+|.+...+...++ ...+.+.|...+ .++.+.+|+
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g----~~d~~nlLkp~L----~~g~i~vIg 320 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG----QVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc----HHHHHHHHHHHH----hCCCeEEEe
Confidence 655555 4688999999999999998888899999999999876532211 122222232233 466899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccH-----HHHHHHcc-----CCcHHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNI-----RELACLSE-----GCTGAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l-----~~la~~t~-----g~sg~d 854 (957)
+||.++ ..|++|.| ||+ .|.++.|+.+++..|++.+..++....++.+ ...+..+. .+-+..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999875 47999999 995 7999999999999999998887776655543 33333333 334668
Q ss_pred HHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccch
Q 002169 855 ISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 924 (957)
...++.+|+....... .....|+.+|+.+.+.+...- +.+.+..+.+.+++.+++++.+... .....+
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~--l~~~i~ 475 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA--LTEAIK 475 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHH--HHHHHH
Confidence 8999999986542211 113458889999888775532 5567888999999999999887543 222222
Q ss_pred hhhhhhhhccCCceEEEeecccCCcccc
Q 002169 925 SIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 925 ~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
..-..|-+..||+.+|||.||+|+||||
T Consensus 476 ~~~~gl~~~~kp~~~~Lf~GP~GvGKT~ 503 (758)
T PRK11034 476 MSRAGLGHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_pred HHhccccCCCCCcceEEEECCCCCCHHH
Confidence 2223456678899999999999999996
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-22 Score=234.35 Aligned_cols=285 Identities=20% Similarity=0.267 Sum_probs=214.6
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
....+|-++|.++.++++.+.+. .+...+.+|+|+||+|||.++..+|... +..++.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~-------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILS-------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHh-------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 45678899999999988877763 4567789999999999999999999764 567788
Q ss_pred EeCCCccc--ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 711 VKGPELFS--KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 711 v~~~~l~~--~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
++.+.+.. +|.|+++..++.+++.+....+.||||||||.+.+.....+++.++.+-+.. . -.++.+.+|
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP----a----LARGeL~~I 303 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP----A----LARGELRCI 303 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH----H----HhcCCeEEE
Confidence 88887765 5999999999999999998889999999999998765443211223322222 2 246788999
Q ss_pred EecCCCCC-----CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCccc-----HHHHHHHccC-----CcHH
Q 002169 789 AATNRPDK-----IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-----IRELACLSEG-----CTGA 853 (957)
Q Consensus 789 ~aTN~~~~-----id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~-----l~~la~~t~g-----~sg~ 853 (957)
+||+..+. -|+||-| || +.|++..|+.++...|++-...++...+.+. +.+.+..+.. +-+.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPD 380 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPD 380 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCc
Confidence 99986553 4999999 99 4889999999999999998888776654432 3333433333 3344
Q ss_pred HHHHHHHHHHHHHHHHh----------------------------------------------------cCCCCCCHHHH
Q 002169 854 DISLICREAAISAIEEN----------------------------------------------------LDASRITMQHL 881 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~----------------------------------------------------~~~~~It~~d~ 881 (957)
....++.+|+.....+. +.. .|+.+++
T Consensus 381 KAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~I 459 (786)
T COG0542 381 KAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDI 459 (786)
T ss_pred hHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHH
Confidence 45555555554432210 001 2566777
Q ss_pred HHHHHhhCC--------CchHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 882 KTAIRHVQP--------SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 882 ~~al~~~~p--------~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
.+.+.+..- .+.+.+.++.+.+++.+++++.+... +.+.++.....|-++.||++||||.|||||||||
T Consensus 460 a~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~a--vs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTE 536 (786)
T COG0542 460 AEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEA--VSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTE 536 (786)
T ss_pred HHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHH--HHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHH
Confidence 777766442 26678999999999999999998766 6677777778899999999999999999999998
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=237.58 Aligned_cols=286 Identities=21% Similarity=0.253 Sum_probs=198.9
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
..+-.+++++|+++....+.+.+. .+...+++|+||||||||++|+.+|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 345678999999998777766543 3445689999999999999999999876 35577
Q ss_pred EEeCCCccc--ccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 710 AVKGPELFS--KWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 710 ~v~~~~l~~--~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
.++.+.+.. .|.|+++..++.+|+.++. ..++||||||+|.+.+.++..+ +.. +-+.|+..| .++.+.
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d----~~n~Lkp~l----~~G~l~ 318 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD----AANLLKPAL----ARGELR 318 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc----HHHHhhHHh----hCCCeE
Confidence 888777663 6899999999999999875 4688999999999987654321 111 122333333 366899
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHccCCc-----
Q 002169 787 VIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCT----- 851 (957)
Q Consensus 787 VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----~~~~l~~la~~t~g~s----- 851 (957)
+|+||+..+ .+|+||.| ||. .|.++.|+.+++.+||+.+.+.+... .+..+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 999998754 37999999 995 89999999999999987766554322 2344566666666654
Q ss_pred HHHHHHHHHHHHHHHHHHh-------------------------------------------------------------
Q 002169 852 GADISLICREAAISAIEEN------------------------------------------------------------- 870 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~------------------------------------------------------------- 870 (957)
+.....++.+|+.....+.
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQ 475 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444433221100
Q ss_pred ------------------------------------------------cCCCCCCHHHHHHHHHhhCC--------CchH
Q 002169 871 ------------------------------------------------LDASRITMQHLKTAIRHVQP--------SEIH 894 (957)
Q Consensus 871 ------------------------------------------------~~~~~It~~d~~~al~~~~p--------~~~~ 894 (957)
.....|+.+|+.+.+.+... .+.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~ 555 (852)
T TIGR03345 476 EKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIE 555 (852)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHH
Confidence 00012455555555544332 2556
Q ss_pred HHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 895 SYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 895 ~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
.+..+.+.+++.+++++.+... +....+..-..|-+..||+++|||.||+|+||||
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~--v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~ 611 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEA--IAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTE 611 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHH--HHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHH
Confidence 7788889999999999887543 3333333334466778999999999999999996
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=240.62 Aligned_cols=285 Identities=21% Similarity=0.275 Sum_probs=209.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
..-.|+.++|.++..+++.+.+. .+...+++|+||||||||++|+++|... +..++.
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 34568999999999999888764 3456789999999999999999999876 468899
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
+++..++ .+|.|+++..++.+|+.+....++||||||+|.+.+.++..+ +. .+.+-|...+ .++.+.+|
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~----~~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AI----DAANILKPAL----ARGELQCI 311 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-cc----cHHHHhHHHH----hCCCcEEE
Confidence 9988876 468999999999999999888899999999999986653321 11 1222232333 36689999
Q ss_pred EecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----CC-CCcccHHHHHHHccCCc-----HH
Q 002169 789 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PC-SSDVNIRELACLSEGCT-----GA 853 (957)
Q Consensus 789 ~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~----~~-~~~~~l~~la~~t~g~s-----g~ 853 (957)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++.....+ .+ ..+..+..++..+.+|. ++
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCch
Confidence 9999765 47999999 996 67999999999989888655322 22 23344666777777665 34
Q ss_pred HHHHHHHHHHHHHHHHh-------------------------------------------------------------cC
Q 002169 854 DISLICREAAISAIEEN-------------------------------------------------------------LD 872 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~-------------------------------------------------------------~~ 872 (957)
....++.+|+....... ..
T Consensus 389 kaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (821)
T CHL00095 389 KAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLE 468 (821)
T ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 55566666654332110 00
Q ss_pred CCCCCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeec
Q 002169 873 ASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRF 944 (957)
Q Consensus 873 ~~~It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~ 944 (957)
...|+.+|+.+.+....-- +.+.+..+.+.+++.+++++.+... +....+..-..|-...||+++|||.|
T Consensus 469 ~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~--l~~~i~~~~~gl~~~~~p~~~~lf~G 546 (821)
T CHL00095 469 VPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVA--VSKAIRRARVGLKNPNRPIASFLFSG 546 (821)
T ss_pred CCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHH--HHHHHHHHhhcccCCCCCceEEEEEC
Confidence 1358888888888775422 5567889999999999999888554 22333322334667899999999999
Q ss_pred ccCCcccc
Q 002169 945 PAGLSQSE 952 (957)
Q Consensus 945 ~~~~g~~e 952 (957)
|+|+||||
T Consensus 547 p~GvGKt~ 554 (821)
T CHL00095 547 PTGVGKTE 554 (821)
T ss_pred CCCCcHHH
Confidence 99999996
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=208.85 Aligned_cols=215 Identities=18% Similarity=0.196 Sum_probs=166.0
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCC---cceeeCCCCChhhHHHHHHHHHhC-------CcEEEEeCC
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT---GILMFGPPGCSKTLMARAVASEAG-------LNFLAVKGP 714 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~---giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v~~~ 714 (957)
+.+++|++++|+++.+.+.| ...++.....|..++. +++|+||||||||++|+++|..+. .+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35799999999999999988 3455666777765543 489999999999999999998752 368999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
++.+.|+|+++...+.+|++|..+ ||||||+|.+...+. .......++..|+..|+.. ..+++||++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~gg---VLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMGG---VLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccCC---EEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999999988888999988654 999999999864321 1235678889999999853 3568888888643
Q ss_pred C-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHH----H--ccCCc-HHHHHHHHHH
Q 002169 795 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRELAC----L--SEGCT-GADISLICRE 861 (957)
Q Consensus 795 ~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l~~la~----~--t~g~s-g~dl~~l~~e 861 (957)
. .++|++.+ ||+..|+|++|+.+++.+|++.++.+....-.. ....+.. . ...|. +|++++++++
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34799999 999999999999999999999999876543222 2222222 1 13344 8999999999
Q ss_pred HHHHHHHHhc
Q 002169 862 AAISAIEENL 871 (957)
Q Consensus 862 A~~~a~~~~~ 871 (957)
|......+..
T Consensus 250 ~~~~~~~r~~ 259 (287)
T CHL00181 250 ARMRQANRIF 259 (287)
T ss_pred HHHHHHHHHH
Confidence 9887766654
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=206.89 Aligned_cols=215 Identities=23% Similarity=0.290 Sum_probs=173.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHcC-------CcEEEEeccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDSG-------VNLFTVNGPEVV 366 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLaralA~~l~-------~~~i~i~~~~l~ 366 (957)
+++|++++|++|++++.+...+..+...|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 69999999999999998876666666677654 45699999999999999999998752 258999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC----
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---- 442 (957)
+.|.|+++..++.+|+.+.. +||||||+|.+...+. ........+..|+..|+.. ..+++||++++...
T Consensus 104 ~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred HHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHH
Confidence 99999998888889988753 5999999999875432 2345677888999999863 45688888876422
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH------cCCCc-HHHHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA------THGFV-GADLAALCNEAALVC 514 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~------t~g~~-gaDi~~l~~~A~~~a 514 (957)
.++|++++ ||+..|+|+.|+.+++.+|++.++.+....+++.....+... .+.|. +++++++++.|..+-
T Consensus 177 ~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 177 YESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 23589999 999999999999999999999999988777777766655543 24454 899999999998888
Q ss_pred HHHhcc
Q 002169 515 LRRYSK 520 (957)
Q Consensus 515 ~rr~~~ 520 (957)
..|...
T Consensus 255 ~~r~~~ 260 (287)
T CHL00181 255 ANRIFE 260 (287)
T ss_pred HHHHHc
Confidence 777654
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=203.24 Aligned_cols=217 Identities=23% Similarity=0.302 Sum_probs=171.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEecc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNGP 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLaralA~~l-------~~~~i~i~~~ 363 (957)
.+++++|++++|+.|++++.+..........|+. ...+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4678999999999999999888776555556654 34578999999999999999999864 2368899999
Q ss_pred cccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC-
Q 002169 364 EVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD- 442 (957)
Q Consensus 364 ~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~- 442 (957)
++.+.++|+....++.+|+.+. ++||||||+|.|.+.. ........+..|+..|+.. ..++++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 9999999999999999998875 3599999999997422 1223456777888888774 45566776665432
Q ss_pred ----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc---------CCCcHHHHHHHHHH
Q 002169 443 ----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT---------HGFVGADLAALCNE 509 (957)
Q Consensus 443 ----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t---------~g~~gaDi~~l~~~ 509 (957)
.++|++++ ||+..|.|+.++.+++.+|++.++......+++..++.++... ..-.++.+.+++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 36789998 9988899999999999999999998887778888887775432 12357888899998
Q ss_pred HHHHHHHHhcc
Q 002169 510 AALVCLRRYSK 520 (957)
Q Consensus 510 A~~~a~rr~~~ 520 (957)
|..+...|...
T Consensus 234 a~~~~~~r~~~ 244 (261)
T TIGR02881 234 AIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHhc
Confidence 88877777654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-21 Score=212.11 Aligned_cols=214 Identities=25% Similarity=0.364 Sum_probs=169.6
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
.+..+.| .+|+.++-..+.|+.|.+-+....+..+.+++.|....+|.|||||||||||+++.|+|+.++..++.++..
T Consensus 191 ~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt 269 (457)
T KOG0743|consen 191 SVGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELT 269 (457)
T ss_pred ecCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeec
Confidence 3344556 789999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-----CcchHHHHHHHHHHHhccccCC--cEEE
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-----VSVSDRVMSQLLVELDGLHQRV--NVTV 787 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-----~~~~~~v~~~LL~~ld~~~~~~--~v~V 787 (957)
+... .. .+|.++..+... +||+|.+||.-+..+...... .....-.++.||+.+||+-... ..+|
T Consensus 270 ~v~~-----n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 270 EVKL-----DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred cccC-----cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 6533 22 278888776554 599999999876644333221 1123466889999999997655 7899
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC--CcHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG--CTGADISLIC 859 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g--~sg~dl~~l~ 859 (957)
|+|||..+.+||||+||||+|..|+++..+.++-+.+++.++.--. +..-++++.+..++ .|+||+...+
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999886432 22333444433332 4677765443
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=202.46 Aligned_cols=225 Identities=20% Similarity=0.248 Sum_probs=166.8
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCC---CcceeeCCCCChhhHHHHHHHHHh-------CCcEEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP---TGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~---~giLL~GPpGtGKTtlAkaiA~~~-------~~~~i~v~~ 713 (957)
.+++++|++++|+++.+.+.|+... ......|..++ .+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3578999999999999999887554 33334455433 358999999999999999999874 247888999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
+++.+.|+|+....++.+|+.|.. +||||||+|.+... .........++.|+..|+.. ..++++|++++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~-----~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG-----GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC-----CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 999999999999999999998864 49999999998531 11124467788899988864 345666666543
Q ss_pred CC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHH-------cc--CCcHHHHHHH
Q 002169 794 PD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACL-------SE--GCTGADISLI 858 (957)
Q Consensus 794 ~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~-------t~--g~sg~dl~~l 858 (957)
.+ .++|++.+ ||+..|.|+.++.+++.+|++.++...+..-+ ..+..++.. .. .-++|.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 36889998 99989999999999999999999987654322 223333221 11 1268999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHH
Q 002169 859 CREAAISAIEENLDASRITMQHL 881 (957)
Q Consensus 859 ~~eA~~~a~~~~~~~~~It~~d~ 881 (957)
+..|......+.+....++.+++
T Consensus 231 ~e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 231 IEKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHHHHHHHhccCCCCHHHH
Confidence 99988877766555444544443
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=204.00 Aligned_cols=215 Identities=24% Similarity=0.277 Sum_probs=175.5
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHcC-------CcEEEEeccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDSG-------VNLFTVNGPEVV 366 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLaralA~~l~-------~~~i~i~~~~l~ 366 (957)
+++|++++|++|++++.+...+..+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 59999999999999999876667777778764 55899999999999999999997762 268999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC--C--
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP--D-- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~--~-- 442 (957)
+.+.|+++..++.+|+.+.. ++|||||+|.+.+.+. .......++..|+..|+. ...+++||++++.. +
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred HhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHH
Confidence 99999998889999998754 5999999999865432 234566788889999986 34678888887653 2
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-------THGFVGADLAALCNEAALVC 514 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~-------t~g~~gaDi~~l~~~A~~~a 514 (957)
.++|++++ ||+..|+|+.++.+++.+|++.++.+....+++..++.+... ...-++++++++++.|..+.
T Consensus 176 ~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 176 FESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 24689999 999999999999999999999999988777788777777665 22335899999999998888
Q ss_pred HHHhcc
Q 002169 515 LRRYSK 520 (957)
Q Consensus 515 ~rr~~~ 520 (957)
..|...
T Consensus 254 ~~r~~~ 259 (284)
T TIGR02880 254 ANRLFC 259 (284)
T ss_pred HHHHhc
Confidence 777654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-20 Score=203.41 Aligned_cols=213 Identities=17% Similarity=0.214 Sum_probs=167.1
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCC---CCcceeeCCCCChhhHHHHHHHHHhC-------CcEEEEeCCC
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP---PTGILMFGPPGCSKTLMARAVASEAG-------LNFLAVKGPE 715 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~---~~giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v~~~~ 715 (957)
++++|++++|+++.+.+.| ...++.+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999999988 56777777778764 34799999999999999999998762 3799999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC-
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP- 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~- 794 (957)
+.+.|.|+++..++.+|+.|.. ++|||||+|.+...+. .......+++.|+..|+.. ..+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999999998889999998865 4999999998854321 1245678889999999853 4578888887643
Q ss_pred -C---CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHc------cCC-cHHHHHHHHHHH
Q 002169 795 -D---KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRELACLS------EGC-TGADISLICREA 862 (957)
Q Consensus 795 -~---~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l~~la~~t------~g~-sg~dl~~l~~eA 862 (957)
+ .++|++.+ ||+..|+||+++.+++..|++.++.+....-+. ....++... +.+ ++++++++++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 24899999 999999999999999999999999886543222 233333321 111 589999999999
Q ss_pred HHHHHHHh
Q 002169 863 AISAIEEN 870 (957)
Q Consensus 863 ~~~a~~~~ 870 (957)
......+.
T Consensus 250 ~~~~~~r~ 257 (284)
T TIGR02880 250 RLRQANRL 257 (284)
T ss_pred HHHHHHHH
Confidence 88776654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-20 Score=197.43 Aligned_cols=209 Identities=24% Similarity=0.381 Sum_probs=160.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
+.--+++|+-.......|..+....-.. .....+-++|+||||||||||++||-||..+|..+..+.+.++...
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 4445788888888887777654321111 1123456679999999999999999999999999998888886432
Q ss_pred ccchHHHHHHHHHHHHhCCCe-EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPS-IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~-ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
-.+....++++|+.|+..... +|||||+|+++..|....- +......+|+||-.-. ....+++++.+||+|..+|.
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym-SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh-cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 234566789999999876543 8899999999988865422 2455666777764433 34558889999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC---------------------------CcccHHHHHHHccCCcH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS---------------------------SDVNIRELACLSEGCTG 852 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~---------------------------~~~~l~~la~~t~g~sg 852 (957)
|+-. |||++++||+|..++|.+++..++.++-.. .+..+.+.|..|+||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9999 999999999999999999999999765321 01125678999999999
Q ss_pred HHHHHHHH
Q 002169 853 ADISLICR 860 (957)
Q Consensus 853 ~dl~~l~~ 860 (957)
++|..++-
T Consensus 579 REiakLva 586 (630)
T KOG0742|consen 579 REIAKLVA 586 (630)
T ss_pred HHHHHHHH
Confidence 99999975
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=226.50 Aligned_cols=286 Identities=22% Similarity=0.269 Sum_probs=199.3
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
..+-.++.++|+++..+++.+.+. .+...+++|+||||||||++|+++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 345578899999998777776653 3456779999999999999999999875 66788
Q ss_pred EEeCCCcc--cccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 710 AVKGPELF--SKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 710 ~v~~~~l~--~~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
.++...+. .+|.|+.++.++.+|+.+.. ..++||||||+|.+.+.+...+ + ..+.+.|... ..++.+.
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~----~d~~~~Lk~~----l~~g~i~ 304 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-A----MDAGNMLKPA----LARGELH 304 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-h----hHHHHHhchh----hhcCceE
Confidence 88877775 46889999999999999865 4589999999999976442221 1 1222333322 2466899
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHccCCc-----
Q 002169 787 VIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-----NIRELACLSEGCT----- 851 (957)
Q Consensus 787 VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-----~l~~la~~t~g~s----- 851 (957)
+|++|+..+ .+|+++.| ||. .|+++.|+.+++..|++.+..++.....+ .+..++..+.+|-
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999999774 47999999 996 68999999999999999888776654333 3445555555544
Q ss_pred HHHHHHHHHHHHHHHHHHh-------------------------------------------------------------
Q 002169 852 GADISLICREAAISAIEEN------------------------------------------------------------- 870 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~------------------------------------------------------------- 870 (957)
+.....++.+|+..+..+.
T Consensus 382 PdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (852)
T TIGR03346 382 PDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEK 461 (852)
T ss_pred chHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444443211100
Q ss_pred -------------------------------------------------------------cCCCCCCHHHHHHHHHhhC
Q 002169 871 -------------------------------------------------------------LDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 871 -------------------------------------------------------------~~~~~It~~d~~~al~~~~ 889 (957)
.....|+.+|+...+.+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~t 541 (852)
T TIGR03346 462 AAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWT 541 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhc
Confidence 0012356666666666532
Q ss_pred --CC------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 890 --PS------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 890 --p~------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
|. +.+.+..+.+.+.+.++++..+... +....+.....|-+..||..+|||.||+|+|||+
T Consensus 542 gip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~--v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~ 610 (852)
T TIGR03346 542 GIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEA--VSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 610 (852)
T ss_pred CCCcccccHHHHHHHHHHHHHhhcccCCChHHHHH--HHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHH
Confidence 21 4567778888888888888777544 2333333334466778899999999999999986
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-20 Score=177.11 Aligned_cols=130 Identities=45% Similarity=0.781 Sum_probs=118.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCch
Q 002169 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEE 410 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~ 410 (957)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.++..+.+..+|+.+.... |+||||||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999999887555567
Q ss_pred HHHHHHHHHHHHhhccccC-CCeEEEEecCCCCCchhhhhCCCCcceeeeecC
Q 002169 411 LSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAV 462 (957)
Q Consensus 411 ~~~~i~~~Ll~~ld~l~~~-~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~ 462 (957)
....++..|+..++..... .++++|++||.++.++++++| +||+..|+++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7889999999999998654 569999999999999999998 89999998863
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-20 Score=178.05 Aligned_cols=130 Identities=46% Similarity=0.754 Sum_probs=117.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~ 761 (957)
+||+||||||||++|+++|+.++.+++.++++++.+.+.++..+.++.+|..++... |+||||||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999998999999999999999999988 9999999999998877 2334
Q ss_pred CcchHHHHHHHHHHHhccccC-CcEEEEEecCCCCCCChhhhCCCCcceecccCC
Q 002169 762 VSVSDRVMSQLLVELDGLHQR-VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~-~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~ 815 (957)
......++++|+..++..... .+++||++||+++.++++++| +||+..|++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 567788999999999987654 569999999999999999998 89999999874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=224.07 Aligned_cols=170 Identities=23% Similarity=0.340 Sum_probs=133.2
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
.+-.+++++|+++..+++.+.+. .+...+++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 45578899999998777776653 3455679999999999999999999987 678889
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++...+. .+|.|++++.++.+|+.+.. ..++||||||+|.+.+.+... ++ ....+.|...+ .++.+.+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~----~d~~~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA----MDAGNMLKPAL----ARGELHC 310 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc----hhHHHHhcchh----hcCCCeE
Confidence 9888876 46889999999999998644 568999999999998664322 11 11223333333 4678999
Q ss_pred EEecCCCCC-----CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC
Q 002169 788 IAATNRPDK-----IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS 835 (957)
Q Consensus 788 I~aTN~~~~-----id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~ 835 (957)
|+||+..+. +|+|+.| ||+ .|+++.|+.+++..|++....++...
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 999998874 7999999 997 68899999999999998877665443
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-20 Score=193.74 Aligned_cols=237 Identities=27% Similarity=0.385 Sum_probs=177.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhC---------CcEEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~v~~ 713 (957)
-|+.++--.++|+++.......+...+.--.-. +...+-+||+||||||||+|+||+|..+. .-+++++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 478888778899998887654443332111101 22344499999999999999999998862 36789999
Q ss_pred CCcccccccchHHHHHHHHHHHHhC-----CCeEEEEeCCchhhhhcCCCC--CCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARAN-----APSIIFFDEIDGLAAIRGKES--DGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~-----~p~ILfiDEid~l~~~r~~~~--~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
..++++|.+++.+.+..+|.+.... .--.++|||+++++..|.... ......-|++|++|++||++....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999886542 223567999999998884432 334456799999999999999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC---C--C-------------cccHHHHHHH-c
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC---S--S-------------DVNIRELACL-S 847 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~---~--~-------------~~~l~~la~~-t 847 (957)
+++|+|-.+.||.|+.. |-|-+.|+++|+...+.+|++..+.++-. . . +.....++.. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 99999999999999999999987764321 1 0 0011223333 5
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 848 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.|.|||-|+.+=- .|..+......|+..+|..|+.
T Consensus 378 ~gLSGRtlrkLP~----Laha~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 378 VGLSGRTLRKLPL----LAHAEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred cCCccchHhhhhH----HHHHhccCCCccChHHHHHHHH
Confidence 7999998887743 3334444455788888876654
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-20 Score=209.47 Aligned_cols=278 Identities=23% Similarity=0.342 Sum_probs=200.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------- 718 (957)
+|..|++++|+++.|++.--.. .|-...+-++|+||||+|||++||.||+.+|..|++++...+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5789999999999999864211 12334445899999999999999999999999999998766533
Q ss_pred --ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------------cCC
Q 002169 719 --KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 783 (957)
Q Consensus 719 --~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------------~~~ 783 (957)
.|+|....++-+.++++...+| +++|||||.+.. +..++. -++||..||.-. .-.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh-------HHHHHHhcChhhccchhhhccccccchh
Confidence 3999999999999999999999 999999999973 222222 124666665321 234
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-----CCCCCc-ccHH--HHHHHccCCc----
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-----IPCSSD-VNIR--ELACLSEGCT---- 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-----~~~~~~-~~l~--~la~~t~g~s---- 851 (957)
.|++|+|.|..+.|+++|+. |+ ++|.++-+..++..+|.+.|+-. .++..+ +++. .+..+.+.|+
T Consensus 554 kVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAG 630 (906)
T ss_pred heEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHh
Confidence 79999999999999999999 98 59999999999999999988843 333311 2221 1111111111
Q ss_pred ----HHHHHHHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHh-----hCCCchHHHHHHHHHHHHHhcCchhhh
Q 002169 852 ----GADISLICREAAISAIEENL--------DASRITMQHLKTAIRH-----VQPSEIHSYKELSAKFQRLVHSNAEAD 914 (957)
Q Consensus 852 ----g~dl~~l~~eA~~~a~~~~~--------~~~~It~~d~~~al~~-----~~p~~~~~y~~~~~~~~~~v~~~~~~~ 914 (957)
-+.|..+||.+++.-.+... .....+..+.+++... ..+.....+..-..++++.+..+.+..
T Consensus 631 VRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~ 710 (906)
T KOG2004|consen 631 VRNLQKQIEKICRKVALKVVEGENSKEESAEKNGRESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTS 710 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccH
Confidence 24566777776665554431 1112333334333311 112234456667788999999999999
Q ss_pred hcccccccchhhhhhhhhccCCceEEEee
Q 002169 915 ESGYQLRPSKSIGSNMWTLIKSISLFLCR 943 (957)
Q Consensus 915 ~~~~~~~~~~~~g~~L~~~~k~~~~fl~~ 943 (957)
...|..+++....++.|+.+++.+.|++.
T Consensus 711 e~~y~~tp~GVvmGLaWT~mGG~~lyvEt 739 (906)
T KOG2004|consen 711 ERMYEVTPPGVVMGLAWTAMGGSTLYVET 739 (906)
T ss_pred HHHhccCCCeeEEEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999984
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=183.56 Aligned_cols=193 Identities=25% Similarity=0.339 Sum_probs=133.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 717 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~ 717 (957)
..+.+.+|+|++||++++..+.-++...... -.+..+++||||||+||||||+.||++++.+|..++++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 3456678999999999999887766532111 23456799999999999999999999999999999987642
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc----------------
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------------- 781 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~---------------- 781 (957)
....+..++.... ...||||||||++. ..+...|+..|+...-
T Consensus 88 ------k~~dl~~il~~l~--~~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 88 ------KAGDLAAILTNLK--EGDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp ------SCHHHHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred ------hHHHHHHHHHhcC--CCcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 1234445555443 34599999999874 4455668888875320
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
-...++|+||++...+.++|+. ||.-+..+..++.++..+|++.....+++.-+ ....++|+.+.| ++|=..++++
T Consensus 147 l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1257899999999999999999 99888889999999999999998888777643 346788999998 7887777776
Q ss_pred HH
Q 002169 861 EA 862 (957)
Q Consensus 861 eA 862 (957)
.+
T Consensus 224 rv 225 (233)
T PF05496_consen 224 RV 225 (233)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=181.95 Aligned_cols=255 Identities=19% Similarity=0.272 Sum_probs=179.9
Q ss_pred cCCccccccCChHHHHHH---HHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---EEEEeC
Q 002169 640 VPKVKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKG 713 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~---l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---~i~v~~ 713 (957)
..+.+++|.+||+++..+ |+.+++ ...-..++|+||||||||+||+.||.....+ ||.+++
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ie-------------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIE-------------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHH-------------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 355677888888877643 222232 1234569999999999999999999987665 888776
Q ss_pred CCcccccccchHHHHHHHHHHHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
..- ..+.+|.+|+.++. ....||||||||++....++ .+|-.++ .+.+++|
T Consensus 199 t~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-------------~fLP~VE----~G~I~lI 254 (554)
T KOG2028|consen 199 TNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-------------TFLPHVE----NGDITLI 254 (554)
T ss_pred ccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-------------cccceec----cCceEEE
Confidence 432 46678999998875 34579999999998654322 2444443 5689999
Q ss_pred Eec--CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc----------CCC----CCcccHHHHHHHccCCcH
Q 002169 789 AAT--NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK----------IPC----SSDVNIRELACLSEGCTG 852 (957)
Q Consensus 789 ~aT--N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~----------~~~----~~~~~l~~la~~t~g~sg 852 (957)
+|| |.--.++.||++ |+ +++.+.....+....||.+...- ++- ..+..++.++..++| ..
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG-Da 330 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG-DA 330 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc-hH
Confidence 887 444568999999 76 36777777888888888774431 111 123447888999998 22
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh
Q 002169 853 ADISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG 927 (957)
Q Consensus 853 ~dl~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 927 (957)
|-.-+.++.++.+...+. .+...++.+|+++.+++-.-. ..+.+++....|++++++.+..+.+||..|+.....
T Consensus 331 R~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGE 410 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGE 410 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCC
Confidence 222333333333333332 245679999999999875432 456777888999999999999999999999998888
Q ss_pred hhhhhccC
Q 002169 928 SNMWTLIK 935 (957)
Q Consensus 928 ~~L~~~~k 935 (957)
..||-.++
T Consensus 411 dPLYVARR 418 (554)
T KOG2028|consen 411 DPLYVARR 418 (554)
T ss_pred CcHHHHHH
Confidence 88886654
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=184.95 Aligned_cols=182 Identities=29% Similarity=0.350 Sum_probs=145.8
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhh--hhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEecc
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTL--SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGP 363 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~--~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~ 363 (957)
|+.+.==...|+.+..++...+.-... ..--+..++-||||||||||||+||+++|+.+. ..++++|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 444444445677777776555433111 111245678899999999999999999998873 356899999
Q ss_pred cccccccchhHHHHHHHHHHHhcc---C--CeEEEEcCccccccCCcCC----CchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 364 EVVSQNYGESEQALHEVFDSASQS---A--PAVVFIDELDAIAPARKDG----GEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 364 ~l~~~~~ge~e~~i~~vf~~a~~~---~--p~IL~IDEiD~l~~~~~~~----~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
.++++|.+|+.+.+..+|+..... . -..++|||+++|+..|... ......|+++++++.||.+.+..++++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999976532 1 2357899999998877432 223567999999999999999999999
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
++|+|-.+.||.|+.. |-|-+.++++|+...+.+|++..+..
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999987764
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=174.02 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=170.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+-.|++.+||+++|+.+.-++.....+ -...-|+|||||||.||||||..||++++.++...+++.+-
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 44567899999999999999888754333 23456799999999999999999999999999999988763
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
....+-.++.....+ +||||||||++.+. +-.-|...|+.+. .-.
T Consensus 90 ----K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 90 ----KPGDLAAILTNLEEG--DVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----ChhhHHHHHhcCCcC--CeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 344555555554444 59999999988532 2223444555431 123
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
..++|+||.+...+...|+. ||.....+..++.++..+|+.+....+.+.-+ ....++|+++.| ++|=...++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 67899999999999999999 99999999999999999999999988877644 346788999998 888888888888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
-..|.-+. ...|+.+-..+|+....-.
T Consensus 228 RDfa~V~~--~~~I~~~ia~~aL~~L~Vd 254 (332)
T COG2255 228 RDFAQVKG--DGDIDRDIADKALKMLDVD 254 (332)
T ss_pred HHHHHHhc--CCcccHHHHHHHHHHhCcc
Confidence 88887654 6678888888888876654
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=186.26 Aligned_cols=200 Identities=23% Similarity=0.312 Sum_probs=147.7
Q ss_pred cccccCCcHHHHHHHHH-HHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 294 DISKLGGLSKEYAILKD-IIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e-~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
+|+.+.=-.+.|+.|.+ +..+....+.+++.|....+|.|||||||||||+++.|+|++++..++.++-.+...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 45566333445555544 434444458888999999999999999999999999999999999998887665532
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCc-------hHHHHHHHHHHHHhhccccCC--CeEEEEecCCCCC
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE-------ELSQRMVATLLNLMDGVCRTD--GVLVIAATNRPDS 443 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~-------~~~~~i~~~Ll~~ld~l~~~~--~v~vI~ttN~~~~ 443 (957)
... ++.++-.+.. .+||+|++||.-+.-+..... ....-.+..||+.+|+++... .-+||+|||.++.
T Consensus 274 n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 DSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred cHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 222 7777766543 469999999977543322211 123356788999999996654 6799999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC-CCCChHHHHHHHHHcCC--CcHHHHHH
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME-HSLLDSEVEYLSMATHG--FVGADLAA 505 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~-~~l~~~~l~~La~~t~g--~~gaDi~~ 505 (957)
|||||.||||+|..|+++.-+.++...+++.++.--. +. ..+.+.+..++ .++||+..
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHH
Confidence 9999999999999999999999999999999886643 33 23333333333 47888764
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=180.26 Aligned_cols=177 Identities=29% Similarity=0.469 Sum_probs=138.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccC-CeEEEEcCccccccCCc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARK 405 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~ 405 (957)
.|-++|+||||||||||++|+-||...|..+-.+.|.++..- -.+.-..|+++|+++.... .-+|||||.|+++..|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 356889999999999999999999999999998888886442 1355678999999998765 45789999999988875
Q ss_pred CCC-chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCC---
Q 002169 406 DGG-EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEH--- 481 (957)
Q Consensus 406 ~~~-~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~--- 481 (957)
... ++..+..++.||---. .....++++.+||+|..+|-++-. |+|..++|+.|..++|..++..++.++-.
T Consensus 461 ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 533 3333344444432211 234568999999999999999988 99999999999999999999988865321
Q ss_pred -------------------C----CChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 482 -------------------S----LLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 482 -------------------~----l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
. ..+..+...|..|.||+|++|..|+.
T Consensus 537 ~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 537 TSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred CCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 1 12344677889999999999998864
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=197.34 Aligned_cols=202 Identities=22% Similarity=0.278 Sum_probs=143.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc--------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-------- 717 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-------- 717 (957)
++++|++++|+.+.+.+.+.... +......++|+||||||||++|++||+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 46889999999999987653211 122334699999999999999999999999999999875542
Q ss_pred -cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc-----c--------cCC
Q 002169 718 -SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-----H--------QRV 783 (957)
Q Consensus 718 -~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~-----~--------~~~ 783 (957)
..|+|.....+...|..+....| ||||||||.+...... ...+.|+..||.. . ...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 35788888888888888877666 8999999999743211 1234566666531 0 124
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-----hcCCCCC---cc---cHHHHHH-HccCCc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSS---DV---NIRELAC-LSEGCT 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-----~~~~~~~---~~---~l~~la~-~t~g~s 851 (957)
++++|+|||..+.++++|++ ||+ +|.|+.|+.+++.+|++.++ ...++.. .+ .+..+++ .+..+.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 78999999999999999999 995 88999999999999998876 2233321 12 2344443 233334
Q ss_pred HHHHHHHHHHHHHHHH
Q 002169 852 GADISLICREAAISAI 867 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~ 867 (957)
.|+++..+...+..+.
T Consensus 540 ~R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 540 VRNLERQIEKICRKAA 555 (775)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 5666655555444443
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=168.42 Aligned_cols=181 Identities=23% Similarity=0.334 Sum_probs=126.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
.+.+++++.|+++.++.++-++...... -.+..++|||||||+||||||+.+|++++.++..++++.+-. .
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~ 89 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A 89 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H
Confidence 4567899999999999988776554222 134568999999999999999999999999999988865422 1
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-----c-----------CCCeEE
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----R-----------TDGVLV 434 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----~-----------~~~v~v 434 (957)
++ +..++.... ...||||||||.+. +.....|+..|+... . -..+++
T Consensus 90 ~d----l~~il~~l~--~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 GD----LAAILTNLK--EGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HH----HHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HH----HHHHHHhcC--CCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 22 333443332 35699999999984 445566888887641 1 135899
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|++|++...+.+.|+. ||.-...+..++.++..+|++.....++..+++....++|.++.|-.
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 9999999999999999 99887889999999999999998888999999999999999988753
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=192.09 Aligned_cols=255 Identities=20% Similarity=0.276 Sum_probs=175.3
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------- 718 (957)
.|..|++++|+++.|.+.-.... +--...-++|+||||+|||+|++.||+.++..|++++...+..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56789999999999988642111 1112233889999999999999999999999999998766533
Q ss_pred --ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------------cCC
Q 002169 719 --KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 783 (957)
Q Consensus 719 --~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------------~~~ 783 (957)
.|+|.....+-+-+.+|...+| +++|||||.+........ -++||..||.-. ...
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchh
Confidence 3999999999999999999999 999999999965432221 135666666321 234
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-----hcCCCCCc-c--cHHHHHHHccCCc----
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSSD-V--NIRELACLSEGCT---- 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-----~~~~~~~~-~--~l~~la~~t~g~s---- 851 (957)
+|++|+|+|..+.|+.+|+. |+ ++|.+.-++.++..+|.+.|+ ++.++..+ + .-+.+-.+...|+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 79999999999999999999 98 599999999999999999887 33444422 1 1122222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 852 ----GADISLICREAAISAIEENLDAS-RITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 852 ----g~dl~~l~~eA~~~a~~~~~~~~-~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
-++|..+||.++..-+....... .|+.. .+++.+..+.+.....+.-..+...
T Consensus 543 VR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~----------------------~l~~yLG~~~f~~~~~~~~~~vGvV 600 (782)
T COG0466 543 VRNLEREIAKICRKAAKKILLKKEKSIVKIDEK----------------------NLKKYLGVPVFRYGKAEEEDQVGVV 600 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCcccceeeCHH----------------------HHHHHhCCcccCccccccCCCCeeE
Confidence 14445555544443333221111 22322 3444444444444444445555566
Q ss_pred hhhhhhccCCceEEEe
Q 002169 927 GSNMWTLIKSISLFLC 942 (957)
Q Consensus 927 g~~L~~~~k~~~~fl~ 942 (957)
-+..|+..++..++++
T Consensus 601 tGLAWT~vGGd~L~IE 616 (782)
T COG0466 601 TGLAWTEVGGDLLTIE 616 (782)
T ss_pred eeeeeecCCceEEEEE
Confidence 6789999999999998
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=176.05 Aligned_cols=218 Identities=23% Similarity=0.296 Sum_probs=161.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+.+|++++|++++++.+..++..... .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 3455899999999999999888753211 124567899999999999999999999999988877765432
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
....+..++... ..++||||||+|.+... ..+.+...|+... ...
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 123344444443 34679999999987421 1122333343221 112
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
++.+|++||++..++++|++ ||...+.+++|+.+++.+|++......++.- +..+..+++.+.| +.+.+..+++.+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 9988999999999999999999888766543 3347888999998 568888888887
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
...+..+. ...|+.+++..++......
T Consensus 227 ~~~a~~~~--~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 227 RDFAQVKG--DGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHHHcC--CCCCCHHHHHHHHHHhCCC
Confidence 77766543 4579999999999876544
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=182.69 Aligned_cols=238 Identities=24% Similarity=0.346 Sum_probs=173.8
Q ss_pred cCCccccccCChHHHHHH---HHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~---l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.++++++|++++... +.+++.. ....+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 455678999999999665 7666642 234579999999999999999999999999999987542
Q ss_pred ccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC
Q 002169 717 FSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
....++.+++.+. .+...||||||+|.+.. ...+.|+..++. ..+++|++|+
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-------------AQQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-------------HHHHHHHHHhhc----CcEEEEEeCC
Confidence 3445666776664 23567999999998742 334566666663 4567777653
Q ss_pred --CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC--CC--CCcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 793 --RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--PC--SSDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 793 --~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~--~~--~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
....+++++++ || .++.+++++.++...+++..+... ++ ..+..+..+++.+.| +.+.+.++++.++..
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~- 203 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG- 203 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-
Confidence 34578999999 88 688999999999999998877542 21 123346677887766 666666666665533
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchh
Q 002169 867 IEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKS 925 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 925 (957)
...|+.+++.+++...... ..+.+.++...|.+++++++.++.+++..+....
T Consensus 204 ------~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~ 259 (413)
T PRK13342 204 ------VDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEA 259 (413)
T ss_pred ------cCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 3469999999988764322 3356788888899999999999888777775543
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=172.24 Aligned_cols=212 Identities=23% Similarity=0.278 Sum_probs=154.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGE 723 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~ 723 (957)
+|++++|++++++.|..++..... ....+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999999888753211 1234567999999999999999999999998877766543321
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCCcEEE
Q 002169 724 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVNVTV 787 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~~v~V 787 (957)
...+...+... ..+.+|||||+|.+.+. ....|+..|+... ...++.+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 12233333332 34569999999987432 1223444443221 1124789
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||++..+++++++ ||...+.+++|+.+++.++++......+.. .+..++.+++.+.| +.+.+..+++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHH
Confidence 9999999999999998 998889999999999999999888765544 23446788999998 4578888888777666
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.... ...|+.+++..++..+.
T Consensus 210 ~~~~--~~~it~~~v~~~l~~l~ 230 (305)
T TIGR00635 210 QVRG--QKIINRDIALKALEMLM 230 (305)
T ss_pred HHcC--CCCcCHHHHHHHHHHhC
Confidence 5443 45699999999988753
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=191.07 Aligned_cols=161 Identities=24% Similarity=0.349 Sum_probs=113.0
Q ss_pred cccCCc-HHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEeccc
Q 002169 296 SKLGGL-SKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPE 364 (957)
Q Consensus 296 ~~i~Gl-~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~ 364 (957)
+.+.|- ++.++.+-++ +..+..++-+|+|.||+|||.++.-+|+.. +..++.++...
T Consensus 186 dPvigr~deeirRvi~i------------L~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEI------------LSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCccCCchHHHHHHHHH------------HhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 344444 7777777776 333445788999999999999999999765 23455555544
Q ss_pred ccc--cccchhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 365 VVS--QNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 365 l~~--~~~ge~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
+.. ++.|+.+.+++.+...+. .....||||||++-+.......+ ... ..+.+.....++++.+|+||...
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d----~~nlLkp~L~rg~l~~IGatT~e 326 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AID----AANLLKPLLARGGLWCIGATTLE 326 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHH----HHHhhHHHHhcCCeEEEecccHH
Confidence 443 467899999999999988 44567899999999987654421 111 22222222345669999988632
Q ss_pred C-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 442 D-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 442 ~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
. +-+|++.| ||+. +.++.|+.++...||......
T Consensus 327 ~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 327 TYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 2 45699999 9976 779999998888888776555
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-16 Score=180.76 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=163.9
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
...++.+|++++|++++++.|..++.. -+.+.++||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 345677899999999999988887753 234566999999999999999999998764
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
.++.+++..- .....+|.+.+.+.. ....||||||+|.+. ...+
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-------------~~a~ 134 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-------------KEAF 134 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------HHHH
Confidence 3555554321 123455666665542 234699999999873 2345
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+.+..+++++++ |+ .++.|.+++.++...+++..+...++. .+..+..+++.+.
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 6788888753 3467888888888899999998 87 489999999999999999888765543 3345777888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhccccc
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQL 920 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~ 920 (957)
| +.|++.+.++.++..+ ...||.+++.+++..... +....|.+++.+.+.....++..
T Consensus 210 G-dlR~aln~Le~l~~~~------~~~It~e~V~~~l~~~~~-------~~i~~li~si~~~d~~~Al~~l~ 267 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS------EGKITLETVHEALGLIPI-------EVVRDYINAIFNGDVKRVFTVLD 267 (472)
T ss_pred C-CHHHHHHHHHHHHHhc------CCCCCHHHHHHHHcCCCH-------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 5566656555433221 234999999988865432 44455566666666665554433
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=180.73 Aligned_cols=224 Identities=18% Similarity=0.206 Sum_probs=161.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++++|+++++..|..++.. -+.+..+||+||+||||||+|+++|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 44567899999999999998888753 2234558999999999999999999988652
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......+|.+.+.+. .+...|+||||+|.+ ....++
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~N 139 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFN 139 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHH
Confidence 33333321 112345566655544 344579999999977 345678
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
+||..|+. ...++++|++|+.++.|.+++++ || ..+.|..++.++..+.++..+.+.++. .+..+..+++.++|
T Consensus 140 ALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 140 ALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999984 34689999999999999999999 88 478898899888888888888776654 34567888999998
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAE 912 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~ 912 (957)
+.||..+++..+...+ ...|+.+++.+.+.-. . ......|.+.+++.+.
T Consensus 215 -d~RdAL~lLeq~i~~~------~~~it~~~V~~~lg~~------~-~~~~~~l~~si~~~d~ 263 (484)
T PRK14956 215 -SVRDMLSFMEQAIVFT------DSKLTGVKIRKMIGYH------G-IEFLTSFIKSLIDPDN 263 (484)
T ss_pred -hHHHHHHHHHHHHHhC------CCCcCHHHHHHHhCCC------C-HHHHHHHHHHHHcCCc
Confidence 7788888877655321 3358888887776321 2 3333445556666544
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=181.29 Aligned_cols=190 Identities=19% Similarity=0.225 Sum_probs=146.4
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
+....+|++|+|++++++.|..++.. -+.+..+||+||+||||||+|++||+.+++
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 45667899999999999999988753 234556899999999999999999998764
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.++..+ ......+|.+++.+.. ....|+||||+|.| +...++
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~N 137 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFN 137 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHH
Confidence 233443321 1234456777776643 33579999999977 345577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.||+.|+.. ..++.+|++||+++.|.+.+++ || ..|.|..++.++..+.|+..+.+.++. ++..+..+++.++|
T Consensus 138 ALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 138 AMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred HHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899998853 4578999999999999999999 88 689999999999999999888766654 34457888899998
Q ss_pred CcHHHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAAIS 865 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~ 865 (957)
+.|+..+++.++...
T Consensus 213 -smRdALsLLdQAia~ 227 (830)
T PRK07003 213 -SMRDALSLTDQAIAY 227 (830)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788888887776643
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-16 Score=187.80 Aligned_cols=246 Identities=18% Similarity=0.237 Sum_probs=171.8
Q ss_pred cCCccccccCChHHHHH---HHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKT---QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~---~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.++++++|++++.. .+++.+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 45567899999999885 44444431 233579999999999999999999999999988876431
Q ss_pred ccccccchHHHHHHHHHHHH-----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 717 FSKWVGESEKAVRSLFAKAR-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
..+.++..++.+. .....+|||||+|.+.. ...+.|+..++ ...+++|++|
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------------~qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------------AQQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-------------HHHHHHHHHhc----CceEEEEEec
Confidence 1223444444442 13456999999998742 22345666665 3467777766
Q ss_pred CC--CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-------CCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 792 NR--PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 792 N~--~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-------~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
+. ...+++++++ |+ .++.+++++.+++..+++..+.. .++. .+..+..|++.+.| +.|++.++++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 43 3468899998 65 47899999999999999988862 2222 23346778888876 67888888887
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCC---CchHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQP---SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p---~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
++..+.........|+.+++++++..... ...+.+.+....|.+++++++.++.++|..++....
T Consensus 221 a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~G 288 (725)
T PRK13341 221 AVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAG 288 (725)
T ss_pred HHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 66433222212234888888888876332 123456678889999999999999999988877544
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=190.30 Aligned_cols=203 Identities=22% Similarity=0.256 Sum_probs=148.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc---------c
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV---------S 367 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~---------~ 367 (957)
++.|++++++.|.+++...... +-..+.+++|+||||||||++|+++|+.++.+++.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 5889999999999987655322 112345799999999999999999999999999988765432 2
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------------ccCCCeEE
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------------CRTDGVLV 434 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------------~~~~~v~v 434 (957)
.|.|.....+...|..+....| ||||||+|.+.+..... ..+.|++.||.. ....++++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 4667777777888887766555 89999999998643221 134566666531 11257899
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc-----C-----CCCCCChHHHHHHHHH-cCCCcHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS-----G-----MEHSLLDSEVEYLSMA-THGFVGADL 503 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~-----~-----~~~~l~~~~l~~La~~-t~g~~gaDi 503 (957)
|+|||.++.+++++++ ||+ .|+|+.|+.+++.+|++.++. . ....+++..+..+++. +..+..++|
T Consensus 467 I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 467 IATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 9999999999999999 995 689999999999999987752 1 1345678888888774 444555666
Q ss_pred HHHHHHHHHHHHH
Q 002169 504 AALCNEAALVCLR 516 (957)
Q Consensus 504 ~~l~~~A~~~a~r 516 (957)
+..+......+.+
T Consensus 544 ~r~i~~~~~~~~~ 556 (775)
T TIGR00763 544 ERQIEKICRKAAV 556 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 6655554444433
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=179.51 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=145.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
+....+|++|+|++++++.|.+++.. -+.+..+||+||+||||||+|++||+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 45667899999999999999988863 234556899999999999999999998865
Q ss_pred -----------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 707 -----------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 707 -----------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
.++.++... ......+|.+++.+.. +...|+||||+|.|.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------
Confidence 233333321 1234556777766542 345799999999773
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 002169 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELA 844 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la 844 (957)
....|.||+.|+. ...++++|++||.++.|.+.+++ || ..+.|..++.++..+.++..+.+.++..+ ..+..++
T Consensus 138 ~~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 138 NHAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred HHHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4567889999885 35578999999999999999999 88 68999999999999888888776655433 3467788
Q ss_pred HHccCCcHHHHHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICREAAI 864 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~ 864 (957)
+.+.| +.++..+++.++..
T Consensus 213 ~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 213 QAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHcCC-CHHHHHHHHHHHHH
Confidence 89888 88888888876654
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=175.47 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=154.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
..++.+|++|+|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 45667899999999999999888852 244567899999999999999999998764
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++++- .....+|.+++.+.. +...|+||||+|.|. ....+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-------------~~A~N 136 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-------------THSFN 136 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------HHHHH
Confidence 3445544321 134567777766532 345799999999773 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+.+.++.. +..+..+++.+.|
T Consensus 137 ALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 137 ALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888853 4577888999999999999987 87 5889999999999999988887766543 3457788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.|++.+++..+... ....|+.+++...+.
T Consensus 212 -dLRdALnLLDQaIay------g~g~IT~edV~~lLG 241 (702)
T PRK14960 212 -SLRDALSLTDQAIAY------GQGAVHHQDVKEMLG 241 (702)
T ss_pred -CHHHHHHHHHHHHHh------cCCCcCHHHHHHHhc
Confidence 788888887766532 234577777766544
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.1e-15 Score=176.87 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=141.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF---------- 708 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~---------- 708 (957)
+.++.+|++|+|++++++.|+.++.. -+.+..+||+|||||||||+|+++|+.++...
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 45667899999999999999888752 13455579999999999999999999986531
Q ss_pred --------------EEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 709 --------------LAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 709 --------------i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
+.+++.+ ......+|.+.+.+. .+...|+||||+|.| ....++
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqN 137 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFN 137 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHH
Confidence 1222211 012344666666554 234569999999977 456778
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.||..|+. ...++++|++|+.+..|.+.+++ |+ .++.|++++.++..+.++..+...++. .+..+..+++.+.|
T Consensus 138 ALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999985 34578888899999999999998 87 588999999999988888877664443 23457788889988
Q ss_pred CcHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAA 863 (957)
Q Consensus 850 ~sg~dl~~l~~eA~ 863 (957)
+.|++.++|..+.
T Consensus 213 -d~R~ALnLLdQal 225 (944)
T PRK14949 213 -SMRDALSLTDQAI 225 (944)
T ss_pred -CHHHHHHHHHHHH
Confidence 7888888887666
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-15 Score=164.94 Aligned_cols=194 Identities=22% Similarity=0.278 Sum_probs=145.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK---- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC----
Confidence 346789999999999999887543221 235678999999999999999999999999887777654321
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEE
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVI 435 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI 435 (957)
...+..++... ..++||||||+|.+... ....|...|+... .-.++++|
T Consensus 90 --~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 90 --PGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred --hHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 22334444433 34679999999988531 1122444444321 11347899
Q ss_pred EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 436 ~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
++||++..+++++++ ||...+.++.|+.+++.+|++......+..+++..++.++..+.|.. +.+..+++.+...+
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 999999999999998 99888999999999999999999998888899999999999998865 55555555544433
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=157.36 Aligned_cols=180 Identities=24% Similarity=0.326 Sum_probs=146.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+..|++..|.+++|+.|+=.|.....+ -....|+||+||||.||||||+.+|+++|.++-..+|+-+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK---- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK---- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC----
Confidence 456788999999999999888766443 134679999999999999999999999999999888877632
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEE
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVI 435 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI 435 (957)
...+-.++.....+ +||||||||.+.+.. -..|...|+.++ .-..+++|
T Consensus 91 --~gDlaaiLt~Le~~--DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 91 --PGDLAAILTNLEEG--DVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred --hhhHHHHHhcCCcC--CeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 23344455554444 699999999996532 334677777641 12458999
Q ss_pred EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 436 ~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
++|.+...+...|+. ||.....+..++.++..+|+......+...+++.....+|+++.|--
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 999999999999998 99999999999999999999999999999999999999999988754
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=173.56 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=144.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++|+|++.+++.|...+.. -+.+..+||+||+||||||+|+++|+.++..
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 34567899999999999999888753 2345558999999999999999999987652
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++..- .....+|.+.+.+. .+...|+||||+|.| ....++
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~N 137 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFN 137 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHH
Confidence 344443220 12345666666543 234579999999977 345678
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.||..|+. ...++.+|++|++++.|.+.+++ || ..++|..++.++....++..+...++.. +..+..+++.+.|
T Consensus 138 ALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999985 35578899999999999999998 87 6899999999999999988887655543 3457788889888
Q ss_pred CcHHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAAI 864 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~ 864 (957)
+.|++.+++..+..
T Consensus 213 -s~R~Al~lldqaia 226 (647)
T PRK07994 213 -SMRDALSLTDQAIA 226 (647)
T ss_pred -CHHHHHHHHHHHHH
Confidence 78888888876553
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=177.19 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=150.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcE
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNF 708 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~ 708 (957)
..++.+|++++|++..++.++..+.. ..+.++||+||||||||++|++++..+ +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34678899999999999888765421 235689999999999999999998652 3689
Q ss_pred EEEeCCCc-------ccccccchH----------------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 709 LAVKGPEL-------FSKWVGESE----------------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 709 i~v~~~~l-------~~~~vg~~~----------------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
+.+++... .....+... ......+.+|.. .+||||||+.+ .
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~g---G~L~IdEI~~L-------------~ 188 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHG---GVLFIDEIGEL-------------H 188 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCC---cEEEEechhhC-------------C
Confidence 99987531 111111000 001123344433 49999999977 3
Q ss_pred HHHHHHHHHHHhccc--------------------------cCCcEEEEEe-cCCCCCCChhhhCCCCcceecccCCCCH
Q 002169 766 DRVMSQLLVELDGLH--------------------------QRVNVTVIAA-TNRPDKIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~--------------------------~~~~v~VI~a-TN~~~~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
...++.|+..|+... ...++.+|++ |+.++.+++++++ ||. .++|++++.
T Consensus 189 ~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ 265 (531)
T TIGR02902 189 PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLD 265 (531)
T ss_pred HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCH
Confidence 445666777665310 0124555554 5789999999999 884 778889999
Q ss_pred HHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 819 TDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 819 ~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+++.+|++..+++.++.- +..++.++..+. ++|++.++++.|+..|..+. ...|+.+|++.++..-
T Consensus 266 eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~--~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 266 EEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG--RKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC--CcEEcHHHHHHHhCCc
Confidence 999999999998876542 233555565554 78999999999998887654 5679999999998743
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-15 Score=173.13 Aligned_cols=208 Identities=17% Similarity=0.203 Sum_probs=155.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|+||+|++++++.|..++.. -+.+..+||+||+|||||++|+++|+.++..
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 45667899999999999999988853 2345568999999999999999999988542
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......+|.+++.+.. +...|+||||+|.+. ...++
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-------------~~a~n 137 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-------------GHSFN 137 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------HHHHH
Confidence 45555432 1234457777766542 334699999999773 34577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+++..+.+.+++ |+ ..+.|..++..+....++..+.+.++. .+..+..+++.+.|
T Consensus 138 aLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 138 ALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999854 4468888999999999989988 87 578899888888888888888776654 33457778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+.+++.+++..++.. ....||.+++.+.+....
T Consensus 213 -slR~al~lLdq~ia~------~~~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 213 -SVRDALSLLDQSIAY------GNGKVLIADVKTMLGTIE 245 (509)
T ss_pred -cHHHHHHHHHHHHhc------CCCCcCHHHHHHHHCCCC
Confidence 788888888776533 134577777776655433
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=164.81 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=151.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++|+|++++++.++.++.. -+.+..++|+||+|||||++|+++|+.+...
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 44667899999999999999888752 2345568999999999999999999987532
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......++.+++.+.. ....|++|||+|.+. ...++
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------~~a~n 137 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------RHSFN 137 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------HHHHH
Confidence 22232211 1233456777666542 234699999999762 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.+.. .+..+..++..+.|
T Consensus 138 aLLk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 138 ALLKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888853 4467888888888899999988 87 588999999999999999888876643 33456778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.++++.++.. ....|+.+++.+++..
T Consensus 213 -~~R~al~~l~~~~~~------~~~~It~~~v~~~l~~ 243 (363)
T PRK14961 213 -SMRDALNLLEHAINL------GKGNINIKNVTDMLGL 243 (363)
T ss_pred -CHHHHHHHHHHHHHh------cCCCCCHHHHHHHHCC
Confidence 788888888766532 2456888888776653
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=162.25 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=141.1
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchh
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 373 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~ 373 (957)
+|+++.|.+++++.|+.++...... -..+.+++|+||||||||++|+++|++++..+..+.+..+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~-- 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG-- 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch--
Confidence 4678999999999999987543221 134568999999999999999999999998877666543321 11
Q ss_pred HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEEe
Q 002169 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIAA 437 (957)
Q Consensus 374 e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~t 437 (957)
.+...+... ..+.+|||||+|.+.+. ....|+..|+... ....+++|++
T Consensus 71 --~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 71 --DLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred --hHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 222223222 34679999999988532 1233555554321 1234789999
Q ss_pred cCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 438 TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 438 tN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
||++..+++++++ ||...+.++.|+.+++.++++..+......+++..++.+++.+.|+. +.+..+++.+...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 9999999999998 99888899999999999999999888888889999999999998865 5556666655433
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=153.05 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=139.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------cEEEE
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------NFLAV 711 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------~~i~v 711 (957)
.+..+.+++++.||+.+++.|+.++.. +...++|||||||||||+.|+++|+++.. .+...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 345677899999999999999988742 34567999999999999999999999865 23334
Q ss_pred eCCCcccccccchHHHHHHHHHHHHhCC----------CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc
Q 002169 712 KGPELFSKWVGESEKAVRSLFAKARANA----------PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ 781 (957)
Q Consensus 712 ~~~~l~~~~vg~~~~~ir~~f~~A~~~~----------p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~ 781 (957)
+.++..+..++. .+ ..-|++..... +.|++|||.|.+ ....+++|.+.|+..
T Consensus 95 naSderGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~-- 156 (346)
T KOG0989|consen 95 NASDERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDF-- 156 (346)
T ss_pred cccccccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhcc--
Confidence 444443332211 11 12233333222 269999999977 455677899999964
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
...+++|.+||+.+.|...+.+ |+. .+.|+....+.....|+....+.++.-+ ..++.++..++| +-|+....++
T Consensus 157 s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lq 232 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQ 232 (346)
T ss_pred ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 4478899999999999999998 884 6778777778888888888877776644 447788888888 5555555565
Q ss_pred HHHH
Q 002169 861 EAAI 864 (957)
Q Consensus 861 eA~~ 864 (957)
.++.
T Consensus 233 sls~ 236 (346)
T KOG0989|consen 233 SLSL 236 (346)
T ss_pred Hhhc
Confidence 5554
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=168.03 Aligned_cols=206 Identities=18% Similarity=0.230 Sum_probs=157.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------------- 705 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~------------- 705 (957)
...+.+|+|++|++.+++.|..++.. -+.+.++||+||+||||||+|+++|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 45667899999999999999887753 24567899999999999999999998653
Q ss_pred -----------CcEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 706 -----------LNFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 706 -----------~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
..++.+++++- .+...+|.+++.+... ...|++|||+|.+. ...++
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~N 134 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFN 134 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHH
Confidence 24556655432 2345678888777533 34699999999772 35678
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+.++.+.+.+++ |+ ..+.|..++.++....++..+.+.+.. ++..+..+++.+.|
T Consensus 135 aLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999854 4478888999999999999998 87 578999999999999999888776654 33457788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.+++..++..+ ...||.+++.+.+..
T Consensus 210 -slR~alslLdqli~y~------~~~It~e~V~~llg~ 240 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS------NNKISEKSVRDLLGC 240 (491)
T ss_pred -CHHHHHHHHHHHHHhc------CCCCCHHHHHHHHcc
Confidence 8888888888776543 236788887766543
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=176.21 Aligned_cols=262 Identities=18% Similarity=0.226 Sum_probs=170.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------- 718 (957)
.++.|++++|+.+.+++..... .+......++|+||||||||++++++|+.++.+|++++......
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4588999999999988763211 12223445999999999999999999999999999998765422
Q ss_pred --ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc-------------ccCC
Q 002169 719 --KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------------HQRV 783 (957)
Q Consensus 719 --~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~-------------~~~~ 783 (957)
.|.|.....+...+..+....| ||||||+|.+...... ...+.|+..||.- ....
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCC
Confidence 3677777777777777665566 8999999988643211 1245677777631 1235
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-----CCCCC---ccc---HHHHHHH-ccCCc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-----IPCSS---DVN---IRELACL-SEGCT 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-----~~~~~---~~~---l~~la~~-t~g~s 851 (957)
++++|+|+|.. .|+++|+. ||. +|.++.++.++..+|.+.++.. .++.. ..+ +..+++. +..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 88999999887 59999999 994 8999999999999999988842 22221 112 3334331 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 852 GADISLICREAAISAIEENL-----DASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~~-----~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
.|.++..++..+...+.+.+ ....|+.+++.+.+..-+ ...........+...
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~----------------------~~~~~~~~~~~~G~~ 598 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQR----------------------FDYGRADNENRVGQV 598 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCc----------------------cccchhhcCCCceEE
Confidence 57777777665555544432 123456666555554222 111111112233344
Q ss_pred hhhhhhccCCceEEEee-cccCCcc
Q 002169 927 GSNMWTLIKSISLFLCR-FPAGLSQ 950 (957)
Q Consensus 927 g~~L~~~~k~~~~fl~~-~~~~~g~ 950 (957)
-+..|+..++...+++. ...|-||
T Consensus 599 ~gla~t~~gg~~l~iE~~~~~g~g~ 623 (784)
T PRK10787 599 TGLAWTEVGGDLLTIETACVPGKGK 623 (784)
T ss_pred EEeEEeCCCeEEEEEEEEEecCCce
Confidence 46789999998888882 2234444
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-15 Score=170.02 Aligned_cols=191 Identities=22% Similarity=0.346 Sum_probs=145.6
Q ss_pred ccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHH
Q 002169 268 VSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLAR 347 (957)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar 347 (957)
|...++|+......++...++.... ++-.|++++|++|-|+|.....+ |--.++-++|+||||+|||++++
T Consensus 386 wlt~LPWgk~S~En~dl~~Ak~iLd---eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~k 456 (906)
T KOG2004|consen 386 WLTSLPWGKSSTENLDLARAKEILD---EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAK 456 (906)
T ss_pred HHHhCCCCCCChhhhhHHHHHHhhc---ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHH
Confidence 3345677766666666555544332 46789999999999998776443 33457889999999999999999
Q ss_pred HHHHHcCCcEEEEecc------ccccc---ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHH
Q 002169 348 LCAHDSGVNLFTVNGP------EVVSQ---NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVAT 418 (957)
Q Consensus 348 alA~~l~~~~i~i~~~------~l~~~---~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~ 418 (957)
.||..++..|+.++-. ++.++ |+|....++-+.++......| +++|||+|.+...-+.... +.
T Consensus 457 SIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sA 528 (906)
T KOG2004|consen 457 SIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SA 528 (906)
T ss_pred HHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HH
Confidence 9999999999887643 44443 788888888888888877766 8999999999743322211 35
Q ss_pred HHHHhhccc-------------cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 419 LLNLMDGVC-------------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 419 Ll~~ld~l~-------------~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
||++||.-+ .-.+|.||+|.|..+.|+++|+. |+. .|+++-+..++...|.+.|+-.
T Consensus 529 LLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 529 LLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred HHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 666666421 22469999999999999999998 884 4999999999999999988753
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=168.48 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=158.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
.+..+-+|+|++|++.+++.|..++.. -+.+.++||+||+||||||+|+++|+.++..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 345667899999999999998887642 2456789999999999999999999988642
Q ss_pred ------------------EEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 708 ------------------FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 708 ------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
++.+++.. ..+...++.+++.+... ...|++|||+|.+.
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------- 141 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------- 141 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-------------
Confidence 22222211 12456778888887543 34699999999773
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 002169 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELA 844 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la 844 (957)
...++.|+..|+. ....+++|++|+.++.+.+++++ |+ ..++|..++.++...+++..+++.+...+ ..+..++
T Consensus 142 ~~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 142 KGAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3457788888884 34578888889999999999998 87 57899999999999999999987765433 4577888
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 845 CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+.+.| +.+++.++++.++..+-. +...||.+++.+.+....
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~~~---~~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMSAK---SDNIISPQVINQMLGLVD 257 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhhcc---CCCCcCHHHHHHHHCCCC
Confidence 88887 888888888887655421 123577777776654433
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=170.22 Aligned_cols=207 Identities=18% Similarity=0.233 Sum_probs=154.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
.+..+.+|+||+|++++++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 345677899999999999999988763 2446679999999999999999999987542
Q ss_pred --------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 708 --------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 708 --------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++.+++.. +.....+|.+++.+.. ....|+||||+|.+ ....+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~ 136 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAF 136 (709)
T ss_pred cHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHH
Confidence 22222211 1234567777776532 34579999999966 34456
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~ 848 (957)
+.||..|+.. ...+.+|++|+++..+.+.+++ || ..+.|+.++.++....++..+.+.++.. +..+..|++.+.
T Consensus 137 NALLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 137 NAMLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 7899999853 4578889999999999999987 87 5788889999999999998888776543 345788888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
| +.|++.+++..+.... ...|+.+++...+..
T Consensus 212 G-slRdAlnLLDqaia~g------~g~It~e~V~~lLG~ 243 (709)
T PRK08691 212 G-SMRDALSLLDQAIALG------SGKVAENDVRQMIGA 243 (709)
T ss_pred C-CHHHHHHHHHHHHHhc------CCCcCHHHHHHHHcc
Confidence 7 8888888888766532 234666666655543
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=165.73 Aligned_cols=208 Identities=23% Similarity=0.289 Sum_probs=151.3
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|+||+|++++++.|..++.. -+.+..+||+|||||||||+|+++|+.+..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 355677899999999999999888753 234455799999999999999999998743
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++.+ ......+|.+.+.+.. ..+.|++|||+|.+ ....++
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHH
Confidence 244444431 1123445665554432 35679999999865 345577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++||.++.+.+++.+ |+. .+.|++|+.++....++..+.+.++. .+..+..+++.+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888853 3467888889999999999998 774 78999999999999999988877665 33457788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+.+++.++++.++.. ...||.+++...+....
T Consensus 210 -dlR~aln~Lekl~~~-------~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 210 -AMRDAESLLERLLAL-------GTPVTRKQVEEALGLPP 241 (504)
T ss_pred -CHHHHHHHHHHHHhc-------CCCCCHHHHHHHHCCCc
Confidence 666777766655321 23577777776654433
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=167.89 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=153.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|++++|++++++.++.++.. -+.++.+||+||+|||||++|+++|+.++.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345677899999999999999888753 234566999999999999999999988642
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
+++.+++.. +.....+|.+.+.+.. ....|+||||+|.+. ...+
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------~~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------TGAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHH
Confidence 344454422 2345567888877663 234699999999772 3467
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+.++.+.+.+++ |+. .+.|+.|+..+....++..+.+.++..+ ..+..++..+.
T Consensus 137 naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 137 NALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899888853 4578888888889999999998 874 7889999999999999998887775433 45677888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+++..+...+ ...|+.+++...+
T Consensus 212 G-~~R~al~~Ldq~~~~~------~~~It~~~V~~vl 241 (559)
T PRK05563 212 G-GMRDALSILDQAISFG------DGKVTYEDALEVT 241 (559)
T ss_pred C-CHHHHHHHHHHHHHhc------cCCCCHHHHHHHh
Confidence 7 7888888887765432 2346666555443
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-14 Score=167.33 Aligned_cols=204 Identities=18% Similarity=0.243 Sum_probs=150.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+-+|++++|++++++.|..++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 44567899999999999999988753 234556899999999999999999998764
Q ss_pred -----------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 707 -----------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 707 -----------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
.++.+++.. ......+|.+++.+... ...|++|||+|.|.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------- 137 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------- 137 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------
Confidence 233333221 12344677777776432 24699999999773
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 002169 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELA 844 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la 844 (957)
...++.|+..|+.. ...+.+|++|+++..+.+.+++ |+ ..+.|..++.++..+.++..+.+.++..+ ..+..++
T Consensus 138 ~~a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 138 NTAFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred HHHHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44577888888853 4578888899999999999988 87 58899999999999999988877666533 3478888
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 845 CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+.+.| +.+++.+++.++.... ...|+.+++.+.+
T Consensus 213 ~~s~G-slR~al~lLdq~ia~~------~~~It~~~V~~~L 246 (618)
T PRK14951 213 RAARG-SMRDALSLTDQAIAFG------SGQLQEAAVRQML 246 (618)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc------CCCcCHHHHHHHH
Confidence 88888 7888888876655432 3346666665544
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=165.10 Aligned_cols=226 Identities=22% Similarity=0.317 Sum_probs=159.4
Q ss_pred cccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHH
Q 002169 271 SLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA 350 (957)
.++|........+...++.... .+..|++++|++|-+++........ -.+.-++|+||||+|||+|++.+|
T Consensus 301 ~lPW~~~sk~~~Dl~~a~~iLd---~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 301 DLPWGKRSKDKLDLKKAEKILD---KDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred hCCCccccchhhhHHHHHHHhc---ccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHH
Confidence 3455554444444444443332 3578999999999999866544321 235678899999999999999999
Q ss_pred HHcCCcEEEEecc------ccccc---ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 351 HDSGVNLFTVNGP------EVVSQ---NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 351 ~~l~~~~i~i~~~------~l~~~---~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+.++..|+.++-. ++.++ |+|....++-+-+..|....| +++|||||.+...-..... ++||+
T Consensus 372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLE 443 (782)
T COG0466 372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLE 443 (782)
T ss_pred HHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHh
Confidence 9999999988743 44443 788888888888888877777 9999999999865433322 34666
Q ss_pred Hhhccc-------------cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----------
Q 002169 422 LMDGVC-------------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG---------- 478 (957)
Q Consensus 422 ~ld~l~-------------~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~---------- 478 (957)
.||.-+ .-.+|+||+|+|..+.|+.+|+. |+. .|++.-++.++..+|.+.|+-.
T Consensus 444 VLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~ 520 (782)
T COG0466 444 VLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK 520 (782)
T ss_pred hcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCc
Confidence 666421 22469999999999999999998 884 5999999999999999988632
Q ss_pred CCCCCChHHHHHHHHHc---CCCcH--HHHHHHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMAT---HGFVG--ADLAALCNEAALVCLR 516 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t---~g~~g--aDi~~l~~~A~~~a~r 516 (957)
-.+.+++..+..+.+.- .|-.+ +.|..+|+.++..-+.
T Consensus 521 ~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 521 GELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILL 563 (782)
T ss_pred cceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 12345666666555431 22222 4466666666554443
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-14 Score=164.83 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=147.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
...+.++++++|++++++.+.+++.... .-.+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~---------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL---------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 3456789999999999999999885321 1234778999999999999999999999999999999887532
Q ss_pred ccccchHHHHHHHHHHHHh------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC
Q 002169 719 KWVGESEKAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
...++.++..+.. ..+.||+|||+|.+... .....+++|+..++. .+..+|++||
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~---------~d~~~~~aL~~~l~~----~~~~iIli~n 138 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN---------EDRGGARAILELIKK----AKQPIILTAN 138 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc---------cchhHHHHHHHHHHc----CCCCEEEecc
Confidence 2233444333322 25679999999987531 122334566666662 2455778889
Q ss_pred CCCCCCh-hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 793 RPDKIDP-ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 793 ~~~~id~-aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+..+.+ .+.+ |+ ..|.|+.|+..++..+++..+.+.++. .+..+..+++.+.| |++.+++.....+.
T Consensus 139 ~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a~--- 208 (482)
T PRK04195 139 DPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIAE--- 208 (482)
T ss_pred CccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHhc---
Confidence 9888877 5655 54 589999999999999999988776654 23456777777766 88887776554321
Q ss_pred cCCCCCCHHHHHHHH
Q 002169 871 LDASRITMQHLKTAI 885 (957)
Q Consensus 871 ~~~~~It~~d~~~al 885 (957)
....|+.+++....
T Consensus 209 -~~~~it~~~v~~~~ 222 (482)
T PRK04195 209 -GYGKLTLEDVKTLG 222 (482)
T ss_pred -CCCCCcHHHHHHhh
Confidence 23456666665444
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=162.75 Aligned_cols=206 Identities=19% Similarity=0.249 Sum_probs=149.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|++++|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 44567899999999999999888753 234556899999999999999999998753
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++..- .....++.+++.+.. +...|+||||+|.+ ....++
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~n 137 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFN 137 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHH
Confidence 3333433211 122345666655442 34569999999976 345677
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++|+++..+.+.+++ |+ ..++|..++.++....++..+.+.++.. +..+..+++.+.|
T Consensus 138 aLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 138 ALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999853 4577888888889889888888 87 6899999999998888888887766543 3446778888877
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.+++..++... ...|+.+++++++..
T Consensus 213 -dlR~alnlLek~i~~~------~~~It~~~V~~~l~~ 243 (546)
T PRK14957 213 -SLRDALSLLDQAISFC------GGELKQAQIKQMLGI 243 (546)
T ss_pred -CHHHHHHHHHHHHHhc------cCCCCHHHHHHHHcc
Confidence 7788888887766432 245777777765543
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=157.48 Aligned_cols=174 Identities=24% Similarity=0.383 Sum_probs=129.5
Q ss_pred ccccccccCCcHHHHH---HHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 291 VEQDISKLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~---~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
.+.+++++.|++..+. -|+.+|+.. .-..++|||||||||||||++||+.++.+|..+++..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAG------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcC------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 3457889999987663 445554322 2346999999999999999999999999999998633
Q ss_pred cccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec--CCC
Q 002169 368 QNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT--NRP 441 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt--N~~ 441 (957)
..-+.++.+++.|+.. ...||||||||.+....+ ..||..|+ .+.+++|++| |+-
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATTENPs 144 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATTENPS 144 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccCCCCC
Confidence 3456788899988543 257999999999865433 34777774 4678888877 556
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCC-----CCChHHHHHHHHHcCCCcHH
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEH-----SLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~-----~l~~~~l~~La~~t~g~~ga 501 (957)
-.+.+|+++ |. +.+++...+.++..++++..+.. .++ .+++..++.++..+.|-..+
T Consensus 145 F~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 145 FELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred eeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 689999999 43 34889999999999999884332 222 36788899999988874433
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-14 Score=161.34 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=139.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|+++.|.+.+++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 4567899999999999988886432 224458999999999999999999988653
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++..- ..-..++++.+.+. .....|+||||+|.+. ....+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHHH
Confidence 233332110 11234455544433 3346799999999984 3456778888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+. ...++++|++|+.++.|.+++++ |+. .+.|..++.++..+.++..+...+..+++..+..++..++|- .+|
T Consensus 145 LEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~Rd 218 (484)
T PRK14956 145 LEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-VRD 218 (484)
T ss_pred hhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-HHH
Confidence 876 35688999999999999999999 774 488999999999999999988888888999999999998874 455
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
...++..+
T Consensus 219 AL~lLeq~ 226 (484)
T PRK14956 219 MLSFMEQA 226 (484)
T ss_pred HHHHHHHH
Confidence 55555543
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=161.46 Aligned_cols=184 Identities=22% Similarity=0.303 Sum_probs=131.1
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------------- 707 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------------- 707 (957)
.|++|+|++++++.|++++.....+ +...+.+.+.++||+||+|+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5899999999999999999764332 222344467789999999999999999999876442
Q ss_pred -------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 708 -------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 708 -------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
+..+.... ..-....+|.+++.+.. +...|+||||+|.+. ....+.||..|
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-------------~~aanaLLk~L 141 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-------------ERAANALLKAV 141 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-------------HHHHHHHHHHh
Confidence 11221111 01134557888887764 334699999999873 33457899999
Q ss_pred hccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHH
Q 002169 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADIS 856 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~ 856 (957)
+.. ..++++|.+|+.++.+.|++++ |+ ..++|++|+.++..+++... .+.. ......++..+.|..++.+.
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 853 4456677777779999999999 87 58999999999887777632 2332 33466788889987665444
Q ss_pred H
Q 002169 857 L 857 (957)
Q Consensus 857 ~ 857 (957)
-
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=163.42 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=145.9
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
....+.+|++|+|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 345677899999999999999888753 1335679999999999999999999988642
Q ss_pred --------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 708 --------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 708 --------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++.+++..- .....+|.+.+.+. .....||||||+|.+. ...+
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~ 136 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAF 136 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHH
Confidence 444443211 11233444433332 2345799999999773 4456
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++||.++.+.+.+++ |+ ..+.|+.++.++...+++..+.+.++. .+..+..+++.+.
T Consensus 137 naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 137 NALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888888853 3478899999999999989888 87 478999999999999998888776653 3445777888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+++.+++ +. ....|+.+++..++
T Consensus 212 G-dlR~Al~lLeqll--~~----g~~~It~d~V~~~l 241 (624)
T PRK14959 212 G-SVRDSMSLLGQVL--AL----GESRLTIDGARGVL 241 (624)
T ss_pred C-CHHHHHHHHHHHH--Hh----cCCCcCHHHHHHHh
Confidence 7 5666666666542 11 23457777665444
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=155.28 Aligned_cols=201 Identities=14% Similarity=0.151 Sum_probs=137.4
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+.+|++++|++++++.|+.++.. ....+++|+||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 34667899999999999988876642 1224699999999999999999999872 34666776
Q ss_pred CCcccccccchHHHHHHHHHHHH-------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++..+ ...++..+.... ...+.|++|||+|.+. ....+.|+..|+.. ...+.
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-------------~~aq~aL~~~lE~~--~~~t~ 131 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-------------SGAQQALRRTMEIY--SNTTR 131 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-------------HHHHHHHHHHHhcc--cCCce
Confidence 65422 123343333211 1346799999999874 23355677777643 23456
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
+|++||....+.+++++ |+ ..+.|++|+.++....++..+++.++. .+..+..++..+.| |++.+++..-..
T Consensus 132 ~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~ 204 (319)
T PLN03025 132 FALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQAT 204 (319)
T ss_pred EEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence 78889999999999998 77 489999999999999999888776654 34457778887776 555555433222
Q ss_pred HHHHhcCCCCCCHHHHHHH
Q 002169 866 AIEENLDASRITMQHLKTA 884 (957)
Q Consensus 866 a~~~~~~~~~It~~d~~~a 884 (957)
+. . ...|+.+++.+.
T Consensus 205 ~~--~--~~~i~~~~v~~~ 219 (319)
T PLN03025 205 HS--G--FGFVNQENVFKV 219 (319)
T ss_pred Hh--c--CCCCCHHHHHHH
Confidence 21 1 234666665543
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=159.11 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=146.4
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhc--CC-CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-ccccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRI--GT-RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVG 722 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l--~~-~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~~vg 722 (957)
.|+||+++|+.+..++...++.-...... .. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 48999999999987774322221100000 11 2356799999999999999999999999999999998875 36888
Q ss_pred chHHH-HHHHHHHH----HhCCCeEEEEeCCchhhhhcCCCCCCC-cchHHHHHHHHHHHhccc-----------cCCcE
Q 002169 723 ESEKA-VRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLH-----------QRVNV 785 (957)
Q Consensus 723 ~~~~~-ir~~f~~A----~~~~p~ILfiDEid~l~~~r~~~~~~~-~~~~~v~~~LL~~ld~~~-----------~~~~v 785 (957)
..... +..++..+ ....++||||||||.+...+....... -....+++.||..|++.. ...+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 75443 34444332 234578999999999976532221111 123468899999998631 11234
Q ss_pred EEEEecCCCC----------------------------------------------------CCChhhhCCCCcceeccc
Q 002169 786 TVIAATNRPD----------------------------------------------------KIDPALLRPGRFDRLLYV 813 (957)
Q Consensus 786 ~VI~aTN~~~----------------------------------------------------~id~aLlr~gRfd~~i~~ 813 (957)
++|.|+|-.. -+.|+++ ||++.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 5566655410 0234444 499999999
Q ss_pred CCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 814 GPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 814 ~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
.+.+.++..+|+.. .++ ..++. .+..++.+++. ..++-+|.|+.++++.....+.+..
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999999999873 222 22222 22235666664 3456688999999988887776643
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=164.52 Aligned_cols=204 Identities=21% Similarity=0.281 Sum_probs=149.6
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE---------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF--------- 708 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~--------- 708 (957)
...++.+|++|+|++.+++.|+.++.. -+.++.+||+||+|||||++|+++|+.+.+.-
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 345677899999999999999988853 23456689999999999999999999875421
Q ss_pred ------------EEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 709 ------------LAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 709 ------------i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
+.+++. ...+...+|.+.+.+.. +...|++|||+|.+. ...++.|
T Consensus 78 ~C~~~~~~~~Dvieidaa------sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-------------~~A~NAL 138 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAA------SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-------------KSAFNAL 138 (725)
T ss_pred HHHHhhcCCCcEEEEecc------ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------HHHHHHH
Confidence 111110 01234557888877764 345799999999773 3467789
Q ss_pred HHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCc
Q 002169 773 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCT 851 (957)
Q Consensus 773 L~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s 851 (957)
|..|+.. ...+++|++|+.++.+.+++++ |+ ..+.|.+++.++....++..+.+.++..+ ..+..+|..+.| +
T Consensus 139 LKtLEEP--P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-s 212 (725)
T PRK07133 139 LKTLEEP--PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-S 212 (725)
T ss_pred HHHhhcC--CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4578888999999999999998 88 48999999999999999888877665433 346778888887 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002169 852 GADISLICREAAISAIEENLDASRITMQHLKTA 884 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~a 884 (957)
.+++..++..++... ...|+.+++.+.
T Consensus 213 lR~AlslLekl~~y~------~~~It~e~V~el 239 (725)
T PRK07133 213 LRDALSIAEQVSIFG------NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHHHHhc------cCCCCHHHHHHH
Confidence 777777777654322 223666655544
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=164.61 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=150.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++|+|++++++.+..++.. -+.+..+||+||+||||||+|+++|+.++..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 44567899999999999999888753 2345568999999999999999999988542
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......+|.+++.+.. +...|+||||+|.+. ....+
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-------------~~a~n 137 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-------------KSAFN 137 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------HHHHH
Confidence 22332211 1234567777777643 234699999999763 44577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g 849 (957)
.||..|+.. ...+.+|++|++++.+.+.+++ |+ ..++|+.++.++..+.++..+.+.++..+ ..+..+++.+.|
T Consensus 138 aLLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 138 AMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999863 4578888899989998888888 87 68999999999998888887776655433 346778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.+++.+++..+... ....|+.+++.+.+.
T Consensus 213 -slr~al~lldqai~~------~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 213 -SMRDALSLLDQAIAY------GGGTVNESEVRAMLG 242 (527)
T ss_pred -CHHHHHHHHHHHHHh------cCCCcCHHHHHHHHC
Confidence 788888888776643 134466666655443
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-14 Score=163.97 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=140.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------- 355 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------------- 355 (957)
....+|++|.|.+.+++.|++++... +.+..+||+||+||||||+|+++|+.+.+
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 34567899999999999999986433 22456899999999999999999998865
Q ss_pred ---------------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHH
Q 002169 356 ---------------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMV 416 (957)
Q Consensus 356 ---------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~ 416 (957)
.++++++.+- ..-..++++++.+. .....|+||||+|.|. ....
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~Aa 141 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAF 141 (700)
T ss_pred cccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHH
Confidence 2233333210 11234555555443 3345799999999984 2345
Q ss_pred HHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcC
Q 002169 417 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH 496 (957)
Q Consensus 417 ~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~ 496 (957)
+.||+.|++ ...+++||++||.++.|.+.+++ |+ ..+.|..++.++..+.++.++...+..+++..++.++..+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 678888887 35678999999999999999999 76 45899999999999999988877777778888888888877
Q ss_pred CCcHHHHHHHHHHHH
Q 002169 497 GFVGADLAALCNEAA 511 (957)
Q Consensus 497 g~~gaDi~~l~~~A~ 511 (957)
|- .++..+++..+.
T Consensus 217 Gs-~RdALsLLdQai 230 (700)
T PRK12323 217 GS-MRDALSLTDQAI 230 (700)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 455556655443
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=164.08 Aligned_cols=190 Identities=21% Similarity=0.231 Sum_probs=143.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+-+|++|+|++++++.|..++.. -+.+..+|||||+|||||++|+++|+.++..
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 44667899999999999999988753 2445668999999999999999999987532
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++... .....+|.+.+.+... ...|++|||+|.+. ....+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------~~a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------TNAFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------HHHHH
Confidence 344443221 2345577777766532 23699999999773 44577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ..++++|++|+.++.|.+.+++ |+ ..+.|..++..+....++..+++.++. .+..+..+++.+.|
T Consensus 138 aLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 138 ALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 899999853 4578899999999999999998 87 488999999999888888888776654 34457778888887
Q ss_pred CcHHHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAAIS 865 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~ 865 (957)
+.+++.+++..+...
T Consensus 213 -~lr~al~~Ldqliay 227 (576)
T PRK14965 213 -SMRDSLSTLDQVLAF 227 (576)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 677777777655443
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-13 Score=160.74 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=146.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|++++|++.+++.+..++.. -+.++++||+||+|||||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 44667899999999999999887742 244567999999999999999999998742
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++... ..-..+|.+++.+... ...|++|||+|.+. ....+
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-------------~~A~N 137 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-------------TSAWN 137 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------HHHHH
Confidence 3344433221 1234567777665542 23699999999773 33567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++|+.++.+.+++++ |+. .+.|++++..+....++..+.+.+.. .+..+..++..+.|
T Consensus 138 aLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 138 ALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899998853 4478888899999999999998 874 89999999999998998888766543 33456778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTA 884 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~a 884 (957)
+.+++.++++.++... ...|+.+++.+.
T Consensus 213 -dlR~AlnlLekL~~y~------~~~It~e~V~el 240 (605)
T PRK05896 213 -SLRDGLSILDQLSTFK------NSEIDIEDINKT 240 (605)
T ss_pred -cHHHHHHHHHHHHhhc------CCCCCHHHHHHH
Confidence 6777777777644322 122666555543
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=168.20 Aligned_cols=189 Identities=18% Similarity=0.158 Sum_probs=140.8
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
..+...+|++|+|++.+++.|+.++.. -+.++.+||+||+|||||++|++||+.+++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 345677899999999999999888752 234556899999999999999999998854
Q ss_pred ---------------cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHH
Q 002169 707 ---------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDR 767 (957)
Q Consensus 707 ---------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~ 767 (957)
.++.+++... .....+|.+.+.+. .....|+||||+|.| +..
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~ 135 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQ 135 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHH
Confidence 2333333221 12344555544432 345579999999987 345
Q ss_pred HHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHH
Q 002169 768 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACL 846 (957)
Q Consensus 768 v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~ 846 (957)
..+.||+.|+.. ...+++|++|+.++.|-+.|++ |+ .++.|..++.++..++++..+.+.++..+ ..+..+++.
T Consensus 136 a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 136 GFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 677899999964 4478888899999999999998 77 58899999999999999988877666533 345667777
Q ss_pred ccCCcHHHHHHHHHHHH
Q 002169 847 SEGCTGADISLICREAA 863 (957)
Q Consensus 847 t~g~sg~dl~~l~~eA~ 863 (957)
..| +.+++.+++++.+
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 777 7778888777655
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=162.78 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=141.4
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
....+|++|.|.+.+++.|++.+... +.+..+||+||+||||||+++++|+.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 34568899999999999999886422 224567999999999999999999988642
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+++++..+- ..-..++.+++.+. .....|+||||+|.|.. ...+.|++
T Consensus 79 Cr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHHH
Confidence 333333211 11234566666543 23457999999999842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|++. ..++.||++||.++.|.+.+++ |+ ..+.|..++.++..++|+.++...++.+++..+..+++...|-. +
T Consensus 142 tLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm-R 215 (830)
T PRK07003 142 TLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM-R 215 (830)
T ss_pred HHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-H
Confidence 88773 4578999999999999999999 77 45899999999999999999988888889999999999988754 5
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
+..+++..+.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=161.09 Aligned_cols=189 Identities=19% Similarity=0.183 Sum_probs=140.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+-+|++|+|++++++.|+.++.. -+.+..+||+||+||||||+|+++|+.++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 34567899999999999999988753 234555899999999999999999988753
Q ss_pred --------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 707 --------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 707 --------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
.++.+++... .....+|.+.+.+.. ....|++|||+|.+. ...
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-------------~~A 134 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-------------TAG 134 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-------------HHH
Confidence 2333333221 123455666555432 334699999999773 346
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t 847 (957)
++.||..|+.. ...+++|++|+.++.+.+++++ |+ ..+.|..++.++..+.++..+.+.+... +..+..+++.+
T Consensus 135 ~NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 135 FNALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 78899999853 4588999999999999999998 76 5899999999999999998888776543 33456677777
Q ss_pred cCCcHHHHHHHHHHHHH
Q 002169 848 EGCTGADISLICREAAI 864 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA~~ 864 (957)
.| +.+++.++++.++.
T Consensus 210 ~G-dlR~aln~Ldql~~ 225 (584)
T PRK14952 210 GG-SPRDTLSVLDQLLA 225 (584)
T ss_pred CC-CHHHHHHHHHHHHh
Confidence 76 77888888877654
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=160.69 Aligned_cols=203 Identities=20% Similarity=0.224 Sum_probs=144.8
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc---------
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS--------- 367 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~--------- 367 (957)
++.|++++|++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 4889999999999887644221 1134668999999999999999999999999998887554321
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------------ccCCCeEE
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------------CRTDGVLV 434 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------------~~~~~v~v 434 (957)
.|.|.....+...+..+....| |++|||+|.+.+..+.. ....|+..+|.- ..-+++++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 2455555555555655544444 89999999997653221 234677777641 12368999
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----------CCCCCChHHHHHHHHH-cCCCcHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----------MEHSLLDSEVEYLSMA-THGFVGADL 503 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----------~~~~l~~~~l~~La~~-t~g~~gaDi 503 (957)
|+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.++.. ..+.+++..++.++.. +..+-.+.+
T Consensus 469 i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 469 VATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 9999987 59999998 995 5899999999999999887741 2345677788888754 344445677
Q ss_pred HHHHHHHHHHHHHH
Q 002169 504 AALCNEAALVCLRR 517 (957)
Q Consensus 504 ~~l~~~A~~~a~rr 517 (957)
+..++..+...+.+
T Consensus 545 eR~I~~i~r~~l~~ 558 (784)
T PRK10787 545 EREISKLCRKAVKQ 558 (784)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666655554444
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=153.55 Aligned_cols=205 Identities=21% Similarity=0.263 Sum_probs=148.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
+.++..|++++|++++++.+.+.+.. -+.+..+|||||||+|||++|+++|+.+..
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34677899999999999999887752 234567899999999999999999988642
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
+++.+++.+ ......++.+++.+... ...|++|||+|.+. ...++
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-------------~~~~~ 135 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-------------KSAFN 135 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------HHHHH
Confidence 234444321 12334567777776542 23699999999763 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..++.. ..++++|++|++++.+.+++.+ |+ ..+.+++|+.++...+++..+++.+..- +..+..++..+.|
T Consensus 136 ~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 136 ALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888753 3467888888988888899988 87 4789999999999999999888776543 3446667777776
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.+.+.+.++.+...+ ...||.+++++++.
T Consensus 211 -~~~~a~~~lekl~~~~------~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG------NGNITYEDVNELLG 240 (355)
T ss_pred -ChHHHHHHHHHHHhhc------CCCCCHHHHHHHhC
Confidence 6677777766655432 23477777766554
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=164.83 Aligned_cols=262 Identities=22% Similarity=0.335 Sum_probs=182.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l 716 (957)
....+|++|+|......++.+.+.. ....+..||+.|++||||.++|++|.+.+ +.|||.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4567899999999998888776643 35567789999999999999999998876 579999999654
Q ss_pred ---------ccccccchHHH----HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---
Q 002169 717 ---------FSKWVGESEKA----VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--- 780 (957)
Q Consensus 717 ---------~~~~vg~~~~~----ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--- 780 (957)
++..-|.+..+ -..+|+.|..+ .||||||..| ...++..||+.|+...
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-------------pl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-------------PLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-------------CHHHHHHHHHHHhhceEEe
Confidence 44333433333 35789999888 9999999855 5667778888887532
Q ss_pred ------cCCcEEEEEecCCCCCCChhhhCCCCcceecc-------cCCCCHHHHH--------HHHHHHHhcCCCCCc-c
Q 002169 781 ------QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY-------VGPPNETDRE--------EIFRIHLRKIPCSSD-V 838 (957)
Q Consensus 781 ------~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~-------~~~P~~~er~--------~Il~~~l~~~~~~~~-~ 838 (957)
...+|.||+|||+.-. .++..|||.+-+| +..|...+|. .+++.+.++++.... +
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~---~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLE---KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHH---HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 2348999999997643 4556688876444 4567666664 333444444443321 2
Q ss_pred c---HHHHHHHc-cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHhh--CC-----CchHHHHHHHHHHHHH
Q 002169 839 N---IRELACLS-EGCTGADISLICREAAISAIEENLDASRITMQHLK-TAIRHV--QP-----SEIHSYKELSAKFQRL 906 (957)
Q Consensus 839 ~---l~~la~~t-~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~-~al~~~--~p-----~~~~~y~~~~~~~~~~ 906 (957)
. +..|.+.. .| +.|++++++.++...+-. ...|+..|+- .++..- .+ ......++..+.+++.
T Consensus 449 s~~a~~~L~~y~WPG-NVRELeNviER~v~~~~~----~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~ 523 (560)
T COG3829 449 SPDALALLLRYDWPG-NVRELENVIERAVNLVES----DGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKH 523 (560)
T ss_pred CHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccCC----cceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHH
Confidence 2 33333332 34 689999999998864322 3347777776 555443 11 2344677788888888
Q ss_pred hcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 907 VHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 907 v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
++........++..+.++..| .+||.++|.
T Consensus 524 ~I~~aL~~~~gn~~~aAk~LgIsrttL~rKlkk 556 (560)
T COG3829 524 LIREALERHGGNKSKAAKELGISRTTLYRKLKK 556 (560)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 888888877777777777776 789999876
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=160.12 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=142.2
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------- 355 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------------- 355 (957)
-+..+|+++.|.+.+++.|+.++... +.+..+||+||+||||||+|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 34567899999999999999886422 23567899999999999999999998865
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
.++.+++.+- ..-..+|.+.+.+. .....|+||||+|.|.. ...+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHHH
Confidence 2344444321 12234566665442 23457999999998842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ..++.+|++|+.+..+.+.+++ |+. .++|..++.++..+.++..+.+.+..+++..+..++..+.| ..+
T Consensus 141 tLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88873 4567888888888889888887 763 48999999999999999999888888899999999998876 566
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=160.86 Aligned_cols=205 Identities=18% Similarity=0.228 Sum_probs=149.7
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|++|+|++.+++.|+.++.. -+.++.+|||||+|+|||++|+++|+.+..
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 445677899999999999999888852 234566999999999999999999998754
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
+++.+++.. ......++.+.+.+. .....|++|||+|.+ ....+
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~ 136 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAF 136 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHH
Confidence 233333221 012345666655443 244579999999977 34467
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+. ....+++|++|+.++.+.+++++ |+. .+.|.+++.++..++++..+.+.++. .+..+..+++.+.
T Consensus 137 naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~ 211 (563)
T PRK06647 137 NALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKST 211 (563)
T ss_pred HHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888885 34578888999889999999998 874 78899999999999998888766654 3345677888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+++..++..+ ...|+.+++...+
T Consensus 212 G-dlR~alslLdklis~~------~~~It~e~V~~ll 241 (563)
T PRK06647 212 G-SVRDAYTLFDQVVSFS------DSDITLEQIRSKM 241 (563)
T ss_pred C-CHHHHHHHHHHHHhhc------CCCCCHHHHHHHh
Confidence 7 7888888887665432 2346666666544
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-13 Score=156.80 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=147.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
..++.+|++++|++.+++.++.++.. -+.+..+|||||+|+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 45667899999999999999888853 234556899999999999999999998753
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.++++. ......+|.+.+.+.. +...|++|||+|.+. ....+
T Consensus 77 ~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-------------~~a~n 137 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-------------KEAFN 137 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------HHHHH
Confidence 122222211 1123445666665543 345799999999763 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++|+.++.+.+++.+ |+. .+.|++++.++...+++..++..++.. +..+..++..+.|
T Consensus 138 aLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 138 ALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888854 4467777888888889999988 774 789999999999999999988777653 3346777888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.+++.++++.++..+ ...||.+++.+.+.
T Consensus 213 -~lr~al~~Ldkl~~~~------~~~It~~~V~~~lg 242 (486)
T PRK14953 213 -GMRDAASLLDQASTYG------EGKVTIKVVEEFLG 242 (486)
T ss_pred -CHHHHHHHHHHHHHhc------CCCcCHHHHHHHhC
Confidence 6777777777765432 33577777666543
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=156.95 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=150.6
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|++++|++.+++.|...+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999999999888752 234566899999999999999999988732
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
.++.+++..- ..-..+|.+...+.. ....|++|||+|.+ ....+
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~ 134 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAF 134 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHH
Confidence 2333332211 123566777665432 22369999999976 35567
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.||..|+.. ...+.+|++|+++..+.+++++ |+ ..++|.+++.++..+.++..+.+.+.. .+..+..+++.+.
T Consensus 135 NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 135 NALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899999864 4467888888889999999999 86 588999999999888888888776654 3345778888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
| +.|++.+++..++..+ ...||.+++.+.+.
T Consensus 210 G-dlR~alnlLdqai~~~------~~~It~~~V~~~lg 240 (535)
T PRK08451 210 G-SLRDTLTLLDQAIIYC------KNAITESKVADMLG 240 (535)
T ss_pred C-cHHHHHHHHHHHHHhc------CCCCCHHHHHHHhC
Confidence 7 7888888888776554 23466666655543
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=157.85 Aligned_cols=199 Identities=22% Similarity=0.239 Sum_probs=154.6
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE-------E
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF-------L 709 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~-------i 709 (957)
..+.++-+|+|++||+.+...|..++.. -+...++||.||.||||||+||.+|+.+++.- .
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 4456677899999999999999999863 34567799999999999999999999876531 1
Q ss_pred E------EeCC---Cccc--ccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHH
Q 002169 710 A------VKGP---ELFS--KWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 774 (957)
Q Consensus 710 ~------v~~~---~l~~--~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~ 774 (957)
. ++.. +++. .-...+-..+|.+.+++.- ....|++|||+|.| +...+|+||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhc
Confidence 1 1111 1100 0111245567888888753 34579999999977 4667889999
Q ss_pred HHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHH
Q 002169 775 ELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGA 853 (957)
Q Consensus 775 ~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~ 853 (957)
.|+. +..+|.+|+||..++.+.+.+++ |+ +.+.|...+.++....++..+.+.++..+ ..+..+|+..+| +.|
T Consensus 142 TLEE--PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 142 TLEE--PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred cccc--CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chh
Confidence 9984 56689999999999999999999 87 57889999999999999999988777654 447788999998 899
Q ss_pred HHHHHHHHHHHHH
Q 002169 854 DISLICREAAISA 866 (957)
Q Consensus 854 dl~~l~~eA~~~a 866 (957)
|...++..|....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred hHHHHHHHHHHcc
Confidence 9999999887653
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=150.13 Aligned_cols=212 Identities=23% Similarity=0.308 Sum_probs=142.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+.+|++++|++++++.+..++.. ....+++|+||||||||++|+++++++. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 34566799999999999999887752 1223699999999999999999999873 35677887
Q ss_pred CCccccc-------------ccc-------hHHHHHHHHHHHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 714 PELFSKW-------------VGE-------SEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 714 ~~l~~~~-------------vg~-------~~~~ir~~f~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
.++...+ .+. ....++.+...... ..+.+|+|||+|.+. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-------------~~~ 141 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-------------EDA 141 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-------------HHH
Confidence 6653221 111 11233444333322 234699999999763 223
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t 847 (957)
.+.|...++... ....+|++|+.+..+.+.+.+ |+ ..+.+++|+.++..++++..+.+.++. .+..+..++..+
T Consensus 142 ~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 142 QQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 445666666443 245566777777778888887 76 478999999999999999988876654 344567777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 848 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.| +++.+++.....+. ....||.+++.+++....
T Consensus 217 ~g----dlr~l~~~l~~~~~----~~~~It~~~v~~~~~~~~ 250 (337)
T PRK12402 217 GG----DLRKAILTLQTAAL----AAGEITMEAAYEALGDVG 250 (337)
T ss_pred CC----CHHHHHHHHHHHHH----cCCCCCHHHHHHHhCCCC
Confidence 65 45555544433331 234689999888776543
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=156.07 Aligned_cols=217 Identities=25% Similarity=0.319 Sum_probs=141.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcE
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNF 708 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~ 708 (957)
.+.+.+|++++|++...+.+.+.+.. ..+.+++|+|||||||||+|+++++.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 34677899999999998887665532 234579999999999999999998765 3578
Q ss_pred EEEeCCCccc-------ccccchHH----HHHH-------------HHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcc
Q 002169 709 LAVKGPELFS-------KWVGESEK----AVRS-------------LFAKARANAPSIIFFDEIDGLAAIRGKESDGVSV 764 (957)
Q Consensus 709 i~v~~~~l~~-------~~vg~~~~----~ir~-------------~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~ 764 (957)
+.+++..+-. .+.|.... ..+. .+..+ ...+|||||++.|
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~a---sgGvL~LDEi~~L------------- 277 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDA---HGGVLFIDEIGEL------------- 277 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhc---CCCeEEEeccccC-------------
Confidence 9999876521 11121110 0111 11122 2349999999866
Q ss_pred hHHHHHHHHHHHhccc--------------------------cCCcEEEEEec-CCCCCCChhhhCCCCcceecccCCCC
Q 002169 765 SDRVMSQLLVELDGLH--------------------------QRVNVTVIAAT-NRPDKIDPALLRPGRFDRLLYVGPPN 817 (957)
Q Consensus 765 ~~~v~~~LL~~ld~~~--------------------------~~~~v~VI~aT-N~~~~id~aLlr~gRfd~~i~~~~P~ 817 (957)
....+..|+..|+... ...++++|++| +.++.++++|++ ||. .+++++++
T Consensus 278 d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls 354 (615)
T TIGR02903 278 DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLT 354 (615)
T ss_pred CHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCC
Confidence 3344555666664321 12245666554 568889999988 986 66888999
Q ss_pred HHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHhhC
Q 002169 818 ETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENL------DASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 818 ~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~------~~~~It~~d~~~al~~~~ 889 (957)
.+++.+|++..+.+.+..- +..+..+++.+. .++...+.+..+...+..+.. ....|+.+|+++++..-+
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 9999999999988765432 223444444443 567776777666555433321 223689999999887644
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-13 Score=155.64 Aligned_cols=174 Identities=17% Similarity=0.290 Sum_probs=130.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
++.+|+++.|.+..++.|+..+... ..+..+||+|||||||||+|+++|+.++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 4567899999999988888875432 23456899999999999999999998764
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++..- ..-..++.+.+.+.. ....|+||||+|.+. ......|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHHH
Confidence 3445544321 112345555554432 235699999999884 2334567777
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
++.. .+.+++|++|+.+..+++++++ |+. .++|..++.++...+++..+...+..+++..++.++..+.|
T Consensus 141 LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 141 LEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 7763 4567888888888899999998 774 58999999999999999998888888899999999998765
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=149.80 Aligned_cols=223 Identities=21% Similarity=0.231 Sum_probs=148.1
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---------CcEEEEeC
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKG 713 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~v~~ 713 (957)
..-++++|.++..+.|...+..... -..+.+++++||||||||++++++++++. ..++.+++
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~---------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR---------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3345789999999998887753211 13456799999999999999999987652 46788887
Q ss_pred CCcccc----------cc--c-------c-hHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 714 PELFSK----------WV--G-------E-SEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 714 ~~l~~~----------~v--g-------~-~~~~ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
....+. .. | . ..+..+.++.... ...+.||+|||+|.+... ...++.++
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l 152 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQL 152 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhH
Confidence 654321 10 1 0 1222344444443 345779999999998621 11233444
Q ss_pred HHHHhc-cccCCcEEEEEecCCCC---CCChhhhCCCCcc-eecccCCCCHHHHHHHHHHHHhcC---CCCCcccHHHH-
Q 002169 773 LVELDG-LHQRVNVTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKI---PCSSDVNIREL- 843 (957)
Q Consensus 773 L~~ld~-~~~~~~v~VI~aTN~~~---~id~aLlr~gRfd-~~i~~~~P~~~er~~Il~~~l~~~---~~~~~~~l~~l- 843 (957)
+...+. .....++.+|++||+++ .+++.+.+ ||. ..++|++++.++..+|++..+... ....+..++.+
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 433111 11235789999999886 47888877 774 679999999999999999888631 11122223333
Q ss_pred --HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 844 --ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 844 --a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+..+.| ..+.+.++|+.|+..|..+. ...|+.+|+..|+..+.
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~--~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREG--AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Confidence 344456 56777788999988887664 56799999999887764
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=157.96 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=139.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+++++.|.+.+++.|++++..... | .+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~-------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK-------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc-------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 45678999999999999999754421 1 347899999999999999999999999999999998775322
Q ss_pred hhHHHHHHHHHHHhc------cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 372 ESEQALHEVFDSASQ------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 372 e~e~~i~~vf~~a~~------~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
..++.+...+.. ..+.||+|||+|.+.... +......|+..++. .+..+|+++|.+..+.
T Consensus 79 ---~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 79 ---DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTANDPYDPS 144 (482)
T ss_pred ---HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccCccccc
Confidence 123333333221 246799999999986532 12234556666653 3446777888888887
Q ss_pred h-hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 446 P-ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 446 ~-al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+ .+++ |+ ..|.|+.|+..++..+++..+...+..+++..++.++..+.| |++.+++.
T Consensus 145 ~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 145 LRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred hhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 7 6665 43 459999999999999999999888888899999999998765 55555544
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=151.60 Aligned_cols=241 Identities=24% Similarity=0.312 Sum_probs=162.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhc-CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-cccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG- 722 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l-~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg- 722 (957)
+.|+||+++|+.+..++...++.......+ .-.+|+++||+||||||||++|++||..++.+|+.+++..+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 458999999999988876432222211111 1234688999999999999999999999999999999988864 6888
Q ss_pred chHHHHHHHHHHHH------------------------------------------------------------------
Q 002169 723 ESEKAVRSLFAKAR------------------------------------------------------------------ 736 (957)
Q Consensus 723 ~~~~~ir~~f~~A~------------------------------------------------------------------ 736 (957)
..+..++.+|+.|.
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 46666666665550
Q ss_pred -------------------------------------------------------------------------hCCCeEE
Q 002169 737 -------------------------------------------------------------------------ANAPSII 743 (957)
Q Consensus 737 -------------------------------------------------------------------------~~~p~IL 743 (957)
...-.|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0123499
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEec----CCCCCCChhhhCCCCcceec
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDRLL 811 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aT----N~~~~id~aLlr~gRfd~~i 811 (957)
||||||.++...... +..-...-++..||..|+|-. ...++++|++. ..|+.+-|.|. |||..++
T Consensus 252 fiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 252 FIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 999999998654221 222233558889999998742 34578888765 34666777776 5999999
Q ss_pred ccCCCCHHHHHHHHH--------HHH---hcCCCC---CcccHHHHHHHc-------cCCcHHHHHHHHHHHHHHHHHHh
Q 002169 812 YVGPPNETDREEIFR--------IHL---RKIPCS---SDVNIRELACLS-------EGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 812 ~~~~P~~~er~~Il~--------~~l---~~~~~~---~~~~l~~la~~t-------~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+..++.++..+||. .+. +-.++. .+..+.++|+.+ ++--.|-|+.++......+.-+.
T Consensus 329 ~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 329 ELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred ECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC
Confidence 999999999988882 222 222222 233456666554 34446788888887776665543
Q ss_pred cC----CCCCCHHHHHHHHHhhC
Q 002169 871 LD----ASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 871 ~~----~~~It~~d~~~al~~~~ 889 (957)
-+ ...|+.+.+.+.+..+.
T Consensus 409 p~~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 409 PDLSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred CCCCCCEEEECHHHHHhHHHHHH
Confidence 22 23467766666665543
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=152.89 Aligned_cols=224 Identities=21% Similarity=0.257 Sum_probs=147.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC----C-CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG----T-RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SK 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~----~-~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~ 719 (957)
+.|+||+++++.+..++...++.-....... . ....++||+||||||||++|+++|..++.+|+.+++..+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 4589999999999877632111110000000 1 1135799999999999999999999999999999988765 35
Q ss_pred cccch-HHHHHHHHHHH----HhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhcccc-----------C
Q 002169 720 WVGES-EKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQ-----------R 782 (957)
Q Consensus 720 ~vg~~-~~~ir~~f~~A----~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~-----------~ 782 (957)
|+|.. +..+..++..+ ....++||||||||.+...+...... .-....+++.||+.|++... .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 88875 34444444432 23456799999999998654222111 11224688899999976421 1
Q ss_pred CcEEEEEecCCC---------------------------C-----------------------CCChhhhCCCCcceecc
Q 002169 783 VNVTVIAATNRP---------------------------D-----------------------KIDPALLRPGRFDRLLY 812 (957)
Q Consensus 783 ~~v~VI~aTN~~---------------------------~-----------------------~id~aLlr~gRfd~~i~ 812 (957)
.+.++|.|+|-. + .+.|+++ ||++.+++
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 346777777751 0 0234555 49999999
Q ss_pred cCCCCHHHHHHHHHHH----Hhc----C---CCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 813 VGPPNETDREEIFRIH----LRK----I---PCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 813 ~~~P~~~er~~Il~~~----l~~----~---~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
|.+.+.++..+|+... .++ + ++. .+..++.+++. ...+.+|-++.++++.....+.+..
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 9999999999988753 221 1 222 22235666665 3456689999999988888777654
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-13 Score=153.55 Aligned_cols=210 Identities=16% Similarity=0.164 Sum_probs=146.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
....+.+|++|+|++.+++.|+.++.. -+.+..+||+||||||||++|+++|+.+...
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 345677899999999999999887752 2456679999999999999999999988552
Q ss_pred ----------------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCC
Q 002169 708 ----------------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 708 ----------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~ 761 (957)
++.+++.+. .....++.+.+.+.. ....|+||||+|.+.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------- 140 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------- 140 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------
Confidence 222222111 123556666655532 234699999999773
Q ss_pred CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccH
Q 002169 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNI 840 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l 840 (957)
...++.|+..|+.. ....++|++|+.+..+-+++.+ |+ .++.|.+++.++....++..+++.+.. .+..+
T Consensus 141 ----~~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 141 ----IAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred ----HHHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23456788888743 3466777777878888888888 76 488999999999888888888766543 34457
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 841 RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 841 ~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
..++..+.| +.+.+.+.++.+...+-. .-+...|+.+++.+.+
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~~~-~~~~~~It~~~v~~~v 254 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFSVE-SEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhccc-cCCCCccCHHHHHHHH
Confidence 778888887 667777777665544311 0123467777666554
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-13 Score=154.07 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=143.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|+||+|++.+++.+...+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 34567899999999999999888753 234567999999999999999999988643
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
.++.+++.... .-..++.+.+.+. .....|++|||+|.+. ....
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-------------~~~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-------------KEAF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-------------HHHH
Confidence 23444432211 1234444443332 2456799999999773 3356
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+.+..+.+++.+ |+ ..++|+.++.++..+.++..+++.+.. ++..+..++..+.
T Consensus 139 n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~ 213 (451)
T PRK06305 139 NSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQ 213 (451)
T ss_pred HHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888898864 4477888888988999999998 87 478999999999998888888776654 3345777888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+.++..... . ...|+.+++.+.+
T Consensus 214 g-dlr~a~~~Lekl~~~-----~-~~~It~~~V~~l~ 243 (451)
T PRK06305 214 G-SLRDAESLYDYVVGL-----F-PKSLDPDSVAKAL 243 (451)
T ss_pred C-CHHHHHHHHHHHHHh-----c-cCCcCHHHHHHHH
Confidence 7 556666665544322 1 1336666665544
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-13 Score=160.39 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=138.2
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL------------ 357 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~------------ 357 (957)
.+..+|++|.|.+.+++.|++++... +.+..+||+|||||||||+||++|+.+++.-
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 34567899999999999999886432 2244579999999999999999999886531
Q ss_pred ------------EEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 358 ------------FTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 358 ------------i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+.+++.+ ...-..+|.+.+.+. .+...|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLK 141 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLK 141 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHH
Confidence 1122111 011223455554433 2345799999999983 345677888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. .+++.+|++|+.+..|.+.+++ |+ ..+.|..++.++..+.++..+...+..+.+..++.++..+.|- .+
T Consensus 142 tLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R 215 (944)
T PRK14949 142 TLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MR 215 (944)
T ss_pred HHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 88873 4577888889999999999988 76 4589999999999999998887777778888999999988774 45
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
++..++..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=154.47 Aligned_cols=189 Identities=19% Similarity=0.278 Sum_probs=142.9
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
..+.+|+++.|.+..++.|+..+... +.+..+||+||+||||||+|+++|+.+++.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 34567899999999999888875322 335689999999999999999999988652
Q ss_pred ---------------EEEEecccccccccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHH
Q 002169 357 ---------------LFTVNGPEVVSQNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVA 417 (957)
Q Consensus 357 ---------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~ 417 (957)
++++++.+ ......++.+++.+... ...|++|||+|.+.. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHH
Confidence 12222111 12234667777766432 356999999998842 3456
Q ss_pred HHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 418 TLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 418 ~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.|+..|+. ....+++|++|+.++.+.+++++ |+ ..+++..++.++..++++..+...+..+++..++.++..+.|
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777776 35578888889889999999988 76 458899999999999999999988888889999999998877
Q ss_pred CcHHHHHHHHHHHHH
Q 002169 498 FVGADLAALCNEAAL 512 (957)
Q Consensus 498 ~~gaDi~~l~~~A~~ 512 (957)
+.+++.++++.+..
T Consensus 222 -slR~al~~Ldkai~ 235 (507)
T PRK06645 222 -SARDAVSILDQAAS 235 (507)
T ss_pred -CHHHHHHHHHHHHH
Confidence 66777777766643
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=150.81 Aligned_cols=186 Identities=20% Similarity=0.268 Sum_probs=136.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
.+.+|+++.|.+..++.++..+... +.+..+||+|||||||||+|+++|+.+.+.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4567899999999999998886332 224468999999999999999999987532
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++.+++.+ ...-..++.+.+.+.. ....|++|||+|.+. ....+.|+..
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk~ 142 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHHH
Confidence 22222211 0122345666665432 234699999999883 2234567888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
++.. ...+.+|++|+.++.+.+.+++ |+ ..+++..|+.++..++++..+...+..+++..++.++..+.| ..++
T Consensus 143 lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~ 216 (363)
T PRK14961 143 LEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRD 216 (363)
T ss_pred HhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8763 4567788888888889999988 76 458999999999999999988888888889999999998876 4556
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
+..+++.+
T Consensus 217 al~~l~~~ 224 (363)
T PRK14961 217 ALNLLEHA 224 (363)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=156.12 Aligned_cols=213 Identities=18% Similarity=0.174 Sum_probs=153.8
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe-C--
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK-G-- 713 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~-~-- 713 (957)
.....+.+|++++|++.+++.|..++.. -+.+..+||+||+|+|||++|+++|+.+++.....+ +
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 3445667899999999999999888753 245677999999999999999999998865322111 0
Q ss_pred ------------------CCccccc--ccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 714 ------------------PELFSKW--VGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 714 ------------------~~l~~~~--vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++++... .......+|.+++.+... ...|++|||+|.+. ....
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~ 149 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAF 149 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHH
Confidence 1111000 011245678888776533 35799999999773 3457
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+.+|++|+.++.+.+.+++ |+ ..+.|+.++.++....++..+++.+...+ ..+..+++.+.
T Consensus 150 naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899888854 4468888888888888889888 87 58999999999999999988887765433 45677788888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
| +.+++.++++.++... ...||.+++...+.
T Consensus 225 G-dlr~al~~Ldkli~~g------~g~It~e~V~~llg 255 (598)
T PRK09111 225 G-SVRDGLSLLDQAIAHG------AGEVTAEAVRDMLG 255 (598)
T ss_pred C-CHHHHHHHHHHHHhhc------CCCcCHHHHHHHhC
Confidence 7 7888888887765332 23577777776654
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-13 Score=151.08 Aligned_cols=240 Identities=24% Similarity=0.332 Sum_probs=161.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-cccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG- 722 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg- 722 (957)
..|+||+++|+.+..++...++.......+. -..+.++||+||||||||++|++||..++.+|+.+++.++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4589999999999888753222211111111 113578999999999999999999999999999999998875 6888
Q ss_pred chHHHHHHHHHHHH------------------------------------------------------------------
Q 002169 723 ESEKAVRSLFAKAR------------------------------------------------------------------ 736 (957)
Q Consensus 723 ~~~~~ir~~f~~A~------------------------------------------------------------------ 736 (957)
..+..++.+|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44566666666651
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 002169 737 ------------------------------------------------------------------------ANAPSIIF 744 (957)
Q Consensus 737 ------------------------------------------------------------------------~~~p~ILf 744 (957)
...-.|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01224999
Q ss_pred EeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEec----CCCCCCChhhhCCCCcceecc
Q 002169 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDRLLY 812 (957)
Q Consensus 745 iDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aT----N~~~~id~aLlr~gRfd~~i~ 812 (957)
|||||.++...+. .+..-...-++..||..|+|-. ...++++|++- ..|+.+-|.|. |||..++.
T Consensus 255 iDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 255 IDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999876432 1222233558889999999732 34578888764 35666778887 49999999
Q ss_pred cCCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHHc-------cCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 813 VGPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACLS-------EGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 813 ~~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~~t-------~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+..++.++..+||.. ..+ -.++. .+..+.++|+.+ ++.-+|-|+.++.+....+.-+.-
T Consensus 332 L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p 411 (443)
T PRK05201 332 LDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAP 411 (443)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCC
Confidence 999999999888831 222 12222 233456666554 344467888888877766654432
Q ss_pred C----CCCCCHHHHHHHHHhh
Q 002169 872 D----ASRITMQHLKTAIRHV 888 (957)
Q Consensus 872 ~----~~~It~~d~~~al~~~ 888 (957)
+ ...|+.+.+...+..+
T Consensus 412 ~~~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 412 DMSGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred CCCCCEEEECHHHHHHHHHHH
Confidence 1 2346666666555543
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=155.81 Aligned_cols=209 Identities=16% Similarity=0.195 Sum_probs=146.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
..++.+|++|+|++.+++.|+.++.. -+.+.++||+||+||||||+|+++|+.+...
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 45677899999999999999887752 2456679999999999999999999988652
Q ss_pred ---------------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCC
Q 002169 708 ---------------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGV 762 (957)
Q Consensus 708 ---------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~ 762 (957)
++.+++.. ......++.+.+.+. .....|++|||+|.+.
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt---------- 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS---------- 140 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------
Confidence 12222111 012456677666663 2345699999999773
Q ss_pred cchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHH
Q 002169 763 SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIR 841 (957)
Q Consensus 763 ~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~ 841 (957)
....+.|+..|+.. ...+++|++|+.++.+-+++.+ |+ .++.|..++.++....++..+.+.+.. .+..+.
T Consensus 141 ---~~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 141 ---TAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred ---HHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 33467888888854 3457777778888889999988 76 589999999999888888877766643 344577
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 842 ELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 842 ~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.++..+.| +.+++.+.++.....+. ..-+...|+.+++.+.+
T Consensus 213 ~La~~s~G-dlr~al~eLeKL~~y~~-~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 213 LIARKAQG-SMRDAQSILDQVIAFSV-GSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhcc-ccccCCccCHHHHHHHH
Confidence 78888887 66666666665544431 00123456666665544
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=157.64 Aligned_cols=191 Identities=16% Similarity=0.247 Sum_probs=132.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...++||||+|||||+|++++++++ +..++.+++.++...+..........-|..... .+.+|+|||+|.+...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 456778888776554433322111122222222 4679999999987432
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHH
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l 829 (957)
. .....++..++.+......+||+++..|.. +++.+.+ ||. .++.+.+|+.++|.+|++..+
T Consensus 227 ~-----------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 227 E-----------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred H-----------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 1 223345555555544444455555555544 6788888 885 478999999999999999999
Q ss_pred hcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 830 RKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 830 ~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
...++. ++..++.+|....| +.|++..+++.....+... ...||...+++++..+
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~---~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT---GKPITLELAKEALKDL 349 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHh
Confidence 865543 34457888888887 8899999998776665543 3568888888888875
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=145.83 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=112.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+.++++++|++++++.+..++.. -..+..++|+||||+|||++|++++++.+.+++.+++.+ ..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~ 80 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR 80 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc
Confidence 4566889999999999999888752 223455677999999999999999999999999998876 22
Q ss_pred cccchHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+......+........ ...+.+|+|||+|.+.. ......|...++.. ..++.+|++||.+..++
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------------ADAQRHLRSFMEAY--SKNCSFIITANNKNGII 145 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------------HHHHHHHHHHHHhc--CCCceEEEEcCChhhch
Confidence 1111111222211111 13578999999997621 11233444556643 34678899999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
+++++ ||. .+.++.|+.+++..+++.+.
T Consensus 146 ~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 146 EPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 99998 884 78999999999987776543
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=153.12 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=144.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|+++.|.+..++.|++.+... +.+..+||+||+|+||||+|+++|+.+.+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 4567899999999999988775322 33568999999999999999999986532
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++++++.+- ..-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHHHH
Confidence 3455555432 123456677766542 2357999999998842 345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+.+|++|+.++.+.+.+++ |+ ..++|..++.++..+.++..+.+.+..+++..++.+++.+.| +.++
T Consensus 140 LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~ 213 (491)
T PRK14964 140 LEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRN 213 (491)
T ss_pred HhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8874 4568888889988999999998 66 348999999999999999999988888999999999999876 6667
Q ss_pred HHHHHHHHHH
Q 002169 503 LAALCNEAAL 512 (957)
Q Consensus 503 i~~l~~~A~~ 512 (957)
+.+++..+..
T Consensus 214 alslLdqli~ 223 (491)
T PRK14964 214 ALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHH
Confidence 7777766543
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=156.06 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=141.6
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
..+.+|+++.|.+.+++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 34567899999999999999986432 224468999999999999999999988642
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++++++.+- ..-..++.+.+.+. .....|+||||+|.+.. ...+.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHHH
Confidence 444544321 12234566665543 23356999999999842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...+..+++..++.++..+.| +.+
T Consensus 142 ~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88874 4568888888889999989988 66 347899999999999999888888888889999999998865 567
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
++.+++..+.
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 7777776653
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=158.69 Aligned_cols=197 Identities=23% Similarity=0.314 Sum_probs=138.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEE
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTV 360 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i 360 (957)
...+|+++.|.+..++.++..+. ...+.++||+||||||||++|++++... +.+|+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 44678899999999988876531 1235789999999999999999998652 3578999
Q ss_pred ecccccccccchhHHHH-----------------------HHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHH
Q 002169 361 NGPEVVSQNYGESEQAL-----------------------HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA 417 (957)
Q Consensus 361 ~~~~l~~~~~ge~e~~i-----------------------~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~ 417 (957)
+|........+-.+..+ ...+..+ ...+|||||+|.+.+ ...+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~-----------~~q~ 193 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP-----------VQMN 193 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH-----------HHHH
Confidence 98632110000000000 0012222 246999999998843 3345
Q ss_pred HHHHHhhccc--------------------------cCCCeEEE-EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHH
Q 002169 418 TLLNLMDGVC--------------------------RTDGVLVI-AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLE 470 (957)
Q Consensus 418 ~Ll~~ld~l~--------------------------~~~~v~vI-~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~ 470 (957)
.|+..|+.-. ...++.+| +||+.++.++|++++ |+. ++.++.++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHH
Confidence 5666654310 01123444 556779999999999 874 58899999999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 471 ILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 471 Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
|++..+++....+++..++.++..+. +++++.++++.|+..+..+.
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~ 316 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG 316 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC
Confidence 99999998888889999998887654 78999999999988776543
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=155.58 Aligned_cols=187 Identities=19% Similarity=0.224 Sum_probs=138.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
+.+..+|++++|++++++.|..++.. -+...++||+||+|||||++|+++|+.++..
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 45667899999999999999888863 1234679999999999999999999987652
Q ss_pred ---------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 708 ---------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 708 ---------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
++.++.. .......+|++++.+.. +...|+||||+|.| ....
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a 137 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAA 137 (620)
T ss_pred ccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHH
Confidence 2222221 12345678888877753 23469999999977 3456
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t 847 (957)
.+.||..|+. ....+++|++|++++.+-+.+++ |+ ..+.|+.++.++....++..+.+.+.. ....+..+++.+
T Consensus 138 ~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 138 FNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 7789999984 34578888889989999999988 87 578898888888877777777665443 234477788888
Q ss_pred cCCcHHHHHHHHHHH
Q 002169 848 EGCTGADISLICREA 862 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA 862 (957)
.| +.+++.++++..
T Consensus 213 ~G-~lr~A~~lLekl 226 (620)
T PRK14948 213 QG-GLRDAESLLDQL 226 (620)
T ss_pred CC-CHHHHHHHHHHH
Confidence 87 556666666653
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=148.12 Aligned_cols=212 Identities=21% Similarity=0.237 Sum_probs=146.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc-
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL- 716 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l- 716 (957)
....+.+|++++|++.+++.+...+.. -+.+.++|||||||+|||++|+++|+.+..+........+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 345677899999999999999888753 2345689999999999999999999987542111000000
Q ss_pred -----ccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 717 -----FSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 717 -----~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
...........++.+++.+.. ..+.|++|||+|.+. ...++.++..++.. ....++
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~--~~~~~~ 141 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEP--PAHAIF 141 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCC--CCceEE
Confidence 000011234567777776643 235699999999663 23466788777753 335677
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++|+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.++. .+..+..++..+.| +.+.+.+.++..+..+
T Consensus 142 Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~ 217 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC 217 (367)
T ss_pred EEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 7778888899999988 76 478999999999999998888777753 34557777887776 6677777776555432
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 002169 867 IEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~ 886 (957)
- . .||.++++..+.
T Consensus 218 ~-----~-~it~~~v~~~~~ 231 (367)
T PRK14970 218 G-----K-NITRQAVTENLN 231 (367)
T ss_pred C-----C-CCCHHHHHHHhC
Confidence 1 1 266666665554
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=153.24 Aligned_cols=190 Identities=17% Similarity=0.273 Sum_probs=131.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
..+++||||+|||||.|++++++++ +..++.+++.++...+...... .+..+.+..+ .+.+|+|||+|.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4568999999999999999999886 5678888877665443322111 1122222222 256999999998753
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~ 828 (957)
.. .....++..++........+||.++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..
T Consensus 214 ~~-----------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 214 KE-----------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CH-----------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 21 223345555554433434445555444543 5678887 886 47899999999999999999
Q ss_pred HhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 829 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 829 l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+...++. .+..++.+|....+ +.+++..+++.....|... ...||.+.+++++...
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~---~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT---GKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHh
Confidence 9876654 34457788888886 8899999999877666543 3568888888888765
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-12 Score=146.78 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=151.1
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFS 718 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~ 718 (957)
.-+.++|.++..+++...+.... .-..+.+++++||||||||++++.+++++ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~---------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL---------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 33568898988888877764211 11334569999999999999999999876 46788898865422
Q ss_pred c----------cc-------cc-hHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc
Q 002169 719 K----------WV-------GE-SEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL 779 (957)
Q Consensus 719 ~----------~v-------g~-~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~ 779 (957)
. .. +. ....+..+.+.... ..+.||+|||+|.+.... ....+..++..++..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~ 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEY 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhcc
Confidence 1 11 11 12222333333332 456799999999886211 123455666655544
Q ss_pred ccCCcEEEEEecCCCC---CCChhhhCCCCcc-eecccCCCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHccCC--
Q 002169 780 HQRVNVTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKI---PCSSDVNIRELACLSEGC-- 850 (957)
Q Consensus 780 ~~~~~v~VI~aTN~~~---~id~aLlr~gRfd-~~i~~~~P~~~er~~Il~~~l~~~---~~~~~~~l~~la~~t~g~-- 850 (957)
. ..++.+|+++|..+ .+++.+.+ ||. ..|+|++++.++..+|++..++.- ....+..++.+++.+.+.
T Consensus 170 ~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 P-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred C-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 3 23788999988764 46777776 553 578999999999999999887642 122334456677766432
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 851 TGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 851 sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..+.+..+|+.|+..|..+. ...|+.+|+..|+..+.+.
T Consensus 247 d~r~a~~ll~~a~~~a~~~~--~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREG--SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHHH
Confidence 35666788888888887664 5679999999999887543
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=156.46 Aligned_cols=186 Identities=20% Similarity=0.289 Sum_probs=138.5
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+..+... +.+..+||+||+||||||+|+++|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 4567899999999999998886432 124457999999999999999999988652
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++.+- ..-..++.+.+.+. .+...|+||||+|.|. ....+.|+..
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHH
Confidence 233333210 11233555555432 2345799999999884 3456778898
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+. ..+++.+|++|+.+..|.+.+++ |+ ..+.|..++.++..+.++..+...+..+++..+..++..+.|- .++
T Consensus 143 LEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~R~ 216 (647)
T PRK07994 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-MRD 216 (647)
T ss_pred HHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHH
Confidence 887 35678888899999999999998 75 5699999999999999999887777777888899999888774 455
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
...++..+
T Consensus 217 Al~lldqa 224 (647)
T PRK07994 217 ALSLTDQA 224 (647)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=148.81 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=132.3
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 356 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------------- 356 (957)
.|++|+|.+.+++.|++++.....+ +..++...+..+||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 3678999999999999998765332 222444567789999999999999999999876442
Q ss_pred ------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 357 ------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 357 ------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
+..+.... .. -.-..++.+++.+.. ....|+||||+|.+.. ...+.|++.|+..
T Consensus 81 ~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aanaLLk~LEep 144 (394)
T PRK07940 81 AGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANALLKAVEEP 144 (394)
T ss_pred cCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHHHHHHhhcC
Confidence 11221110 11 112346777776543 3356999999999842 2346688888874
Q ss_pred ccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHH
Q 002169 427 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506 (957)
Q Consensus 427 ~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l 506 (957)
..++++|++|+.++.+.|.+++ |+ ..+.|+.|+.++..+++... .+ +++.....++..++|..+..+.-+
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4456677777778999999999 76 46999999999887777632 22 356777889999999988776654
Q ss_pred HH
Q 002169 507 CN 508 (957)
Q Consensus 507 ~~ 508 (957)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 43
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=147.05 Aligned_cols=177 Identities=17% Similarity=0.214 Sum_probs=127.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEecccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEV 365 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l 365 (957)
.+.+++++.|.+++++.|+.++... ...++||+||||||||++|+++|+++. ..++++++++.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 3457889999999999988874321 123699999999999999999999872 24567776654
Q ss_pred cccccchhHHHHHHHHHHHh---ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 366 VSQNYGESEQALHEVFDSAS---QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~a~---~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
.+. ......++..-+... ...+.|++|||+|.+.. ...+.|+..|+.. ...+.+|+++|...
T Consensus 76 ~~~--~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~--~~~t~~il~~n~~~ 140 (319)
T PLN03025 76 RGI--DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIY--SNTTRFALACNTSS 140 (319)
T ss_pred ccH--HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhcc--cCCceEEEEeCCcc
Confidence 321 111222222111110 12367999999999853 2235567777654 23456788899888
Q ss_pred CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.+.+++++ |+ ..++|+.|+.++....++..+++.+..+++..++.++....|
T Consensus 141 ~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 141 KIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred ccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999998 65 358999999999999999999888888899999999988765
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=153.13 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=142.3
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
....+|++|.|.+.+++.|+..+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 34567899999999999999986432 235679999999999999999999987542
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++++++.+ ......++.+++.+. .....|+||||+|.+. ....+.|+.
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 12222211 112345677776543 2235799999999873 234567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. .+.+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...+..+++..+..|++.+.| +.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 88863 4567888899999999999887 77 447888999999999999999988888899999999998865 567
Q ss_pred HHHHHHHHHHH
Q 002169 502 DLAALCNEAAL 512 (957)
Q Consensus 502 Di~~l~~~A~~ 512 (957)
++.+++..+..
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=138.46 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=133.2
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------cEEEEeccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------NLFTVNGPE 364 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~------~~i~i~~~~ 364 (957)
.+.+++++.|.+.+++.|+..+.- ....+.|||||||||||+.|+++|+++.. .+.+.+.++
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 345788999999999999888522 33558999999999999999999998855 234455555
Q ss_pred ccccccchhHHHHHHHHHHHhcc---------C-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 365 VVSQNYGESEQALHEVFDSASQS---------A-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 365 l~~~~~ge~e~~i~~vf~~a~~~---------~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
-.+..+. ..+++ -|...... . +.|++|||.|.+. ....+.|...|+.. ...+.+
T Consensus 99 erGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~--s~~trF 162 (346)
T KOG0989|consen 99 ERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDF--SRTTRF 162 (346)
T ss_pred cccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhcc--ccceEE
Confidence 4443211 11111 12221111 1 2699999999884 45567899999985 346789
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
|+.||..+.|.+.+.+ |..+ +.|+....+.....|+.+..+.+..+++..++.+++.++|-
T Consensus 163 iLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred EEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 9999999999999988 7644 78888888899999999999999999999999999988874
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=145.75 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=150.1
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhh-h--cCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccch
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLS-S--LGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE 372 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~-~--l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge 372 (957)
|.|++..++.|...+..+...-... . -.+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 8999999999977765443321000 0 011 24678999999999999999999999999999999988764 57776
Q ss_pred h-HHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccc-----------cCCCeE
Q 002169 373 S-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVC-----------RTDGVL 433 (957)
Q Consensus 373 ~-e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~-----------~~~~v~ 433 (957)
. +..+..+++.+ ....++||||||+|.+.+++.+.+ +.....+...|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 33445555432 234578999999999987643221 1122357788999998531 112345
Q ss_pred EEEecCCCC----------------------------------------------------CchhhhhCCCCcceeeeec
Q 002169 434 VIAATNRPD----------------------------------------------------SIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 434 vI~ttN~~~----------------------------------------------------~ld~al~r~gRfd~~I~i~ 461 (957)
+|.|+|... -+.|.|. ||+|..+.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 566655400 0123443 4999999999
Q ss_pred CCCHHHHHHHHHH----HHc---------CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 462 VPSPAQRLEILHA----LLS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 462 ~P~~~~r~~Il~~----~l~---------~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
..+.++..+|+.. +++ +..+.+++..++.+++. ...+-.+.|+.+++......+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999972 222 24456788999999986 456777889988888777766554
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=147.78 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=129.3
Q ss_pred cccccccCCcHHHHHH---HHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYAI---LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~---l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
..+++++.|.+..++. |+.++.. ....+++|+|||||||||+|+++|+.++..++.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 3567889999988766 7766522 123479999999999999999999999999999887532
Q ss_pred ccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC--CCC
Q 002169 369 NYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN--RPD 442 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN--~~~ 442 (957)
....++.+++.+. .....||||||+|.+.. .....|+..++. +.+++|++|+ ...
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le~----~~iilI~att~n~~~ 133 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVED----GTITLIGATTENPSF 133 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhhc----CcEEEEEeCCCChhh
Confidence 1234455555543 23567999999998742 223456666653 4567777653 345
Q ss_pred CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC--CC-CCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM--EH-SLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~--~~-~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
.+++++++ |+ ..+.+..++.++...+++..+... +. .+++..++.++..+.| ..+.+.++++.+
T Consensus 134 ~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 134 EVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred hccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 78899998 77 568999999999999999876542 33 6778888999988855 344444444444
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=140.49 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=131.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVV 366 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~ 366 (957)
+++.|.+++++.|...+..... + ..+..++|+||||||||++++++++++. ..+++++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 4689999999999998754422 1 3356799999999999999999997652 467889986543
Q ss_pred ccc-------------------cc-hhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 367 SQN-------------------YG-ESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 367 ~~~-------------------~g-e~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
+.+ .+ ........+++... ...+.||+|||+|.+.... ..++.+|+.+.+.
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~~ 158 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARSN 158 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhccccc
Confidence 210 00 11223344444443 2346799999999997221 1233444444211
Q ss_pred c-ccCCCeEEEEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHc---
Q 002169 426 V-CRTDGVLVIAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMAT--- 495 (957)
Q Consensus 426 l-~~~~~v~vI~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t--- 495 (957)
. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+.. ....+++..++.++...
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1 1235689999999876 46777777 664 56899999999999999988762 22335666666655543
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 002169 496 HGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 496 ~g~~gaDi~~l~~~A~~~a~r 516 (957)
.|. .+.+..+|+.|+..|..
T Consensus 237 ~Gd-~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 237 HGD-ARKAIDLLRVAGEIAER 256 (365)
T ss_pred cCC-HHHHHHHHHHHHHHHHH
Confidence 443 33445577777666644
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-13 Score=153.40 Aligned_cols=260 Identities=21% Similarity=0.277 Sum_probs=180.5
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCc---
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL--- 716 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l--- 716 (957)
..+.+++|.....+++.+.+... ......||+.|++||||.++|++|...+ +.|||.+||..+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 45678999999999998887542 3456679999999999999999998876 469999999654
Q ss_pred ------ccccccchHHHH---HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------
Q 002169 717 ------FSKWVGESEKAV---RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------- 780 (957)
Q Consensus 717 ------~~~~vg~~~~~i---r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------- 780 (957)
++...|.+..+. ...|+.|.++ .||||||..+ ...++..||..|+.-.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCC
Confidence 443334333333 3578888888 9999999865 5667778888887431
Q ss_pred --cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH--------HHHHHHHhcCCCC-CcccHHH
Q 002169 781 --QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE--------EIFRIHLRKIPCS-SDVNIRE 842 (957)
Q Consensus 781 --~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~--------~Il~~~l~~~~~~-~~~~l~~ 842 (957)
-..+|.||+|||+.-. .+...|||.. ++.+..|...+|. ++++.+....+.. ..+.-+.
T Consensus 271 ~~i~vdvRiIaaT~~dL~---~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRDLE---EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcCHH---HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 1347999999997643 4555677765 4455677777765 3444444545432 3344455
Q ss_pred HHHHcc-CC--cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-----hhCCC-c-----hHHHHHHHHHHHHHhc
Q 002169 843 LACLSE-GC--TGADISLICREAAISAIEENLDASRITMQHLKTAIR-----HVQPS-E-----IHSYKELSAKFQRLVH 908 (957)
Q Consensus 843 la~~t~-g~--sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~-----~~~p~-~-----~~~y~~~~~~~~~~v~ 908 (957)
++.+.. .+ +.|+++++++.++..+- ...|+.+++...+. ...+. . ...+....+.+++.++
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I 422 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSE-----GPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVERQLI 422 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCC-----ccccchhhccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 544433 22 57999999999988763 33455555542210 00000 1 1347888889999999
Q ss_pred Cchhhhhcccccccchhhh---hhhhhccCCc
Q 002169 909 SNAEADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
........++....++..| .+||.++|.-
T Consensus 423 ~~aL~~~~g~~~~aA~~LGi~R~tLy~Klk~~ 454 (464)
T COG2204 423 LQALERTGGNKSEAAERLGISRKTLYRKLKEY 454 (464)
T ss_pred HHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999988888888888887 8899998874
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=147.99 Aligned_cols=190 Identities=22% Similarity=0.252 Sum_probs=141.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|++|+|++.+++.|..++.. -+.+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 34567899999999999999888752 234566999999999999999999998752
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
+++.+++.+. .....++.+++.+... ...|++|||+|.+. ....
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-------------~~a~ 138 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-------------QAAF 138 (614)
T ss_pred chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-------------HHHH
Confidence 3344443211 1245677777766433 24699999999773 3457
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+....+-+++++ |+ .++.|.+++.++....++..+.+.++..+ ..+..++..+.
T Consensus 139 naLLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~ 213 (614)
T PRK14971 139 NAFLKTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD 213 (614)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899999864 3467788888888899999998 77 47999999999999999988887776543 34777888887
Q ss_pred CCcHHHHHHHHHHHHHH
Q 002169 849 GCTGADISLICREAAIS 865 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~ 865 (957)
| +.+++.+.+...+..
T Consensus 214 g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 214 G-GMRDALSIFDQVVSF 229 (614)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 666666666655443
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-12 Score=151.87 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=142.2
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------- 355 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------------- 355 (957)
-.+.+|+++.|.+.+++.|++.+... ..+..+||+||+|||||++|+.+|+.+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 34567899999999999999886432 23556899999999999999999988743
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+++.+++.+ +.....++.+.+.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHHH
Confidence 234444321 1233456677666542 2357999999998842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.++.. ...+++|++|+.++.+.+.+++ |+. .++|..|+.++..++++..+.+.+..+++..+..++..+.| ..+
T Consensus 142 tLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88763 4567888888889999999988 764 48899999999999999999888888888999999998876 666
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
+..+++..+.
T Consensus 216 ~al~~Ldq~~ 225 (559)
T PRK05563 216 DALSILDQAI 225 (559)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=152.44 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=122.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
..+++||||||||||+|++++++++ +..++++++.++...+..........-|..... .+++|+|||+|.+..+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 4579999999999999999999887 556888998887665443332211122222212 4679999999988543
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
. .....|+..++.+...+..++|++...|.. +++.+++ ||. ..+++..|+.++|.+|++..+..
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 2 123456666666644555566655555554 6688888 885 46899999999999999999988
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+..++++.++.+|.+..| ..+.+..++......
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 8888999999999998776 445565555554333
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=141.27 Aligned_cols=178 Identities=19% Similarity=0.299 Sum_probs=126.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
+.+++++.|.+.+++.|..++... ...+++|+||||||||++|+++++++. .+++.+++.++.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 346788999999999988875321 123799999999999999999999874 346788887654
Q ss_pred ccc-------------cch-------hHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 367 SQN-------------YGE-------SEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 367 ~~~-------------~ge-------~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
... .+. ....++.+.+.... ..+.+|+|||+|.+.. .....|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~~L~~ 147 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQALRR 147 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHHHHHH
Confidence 321 011 11233444333322 2356999999998732 22345666
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.++... ....+|++++.+..+.+.+++ |+ ..+++..|+.++...+++..+.+.+..+++..++.++..+.|
T Consensus 148 ~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 148 IMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 776543 235566677767777788887 65 458999999999999999998888888899999999998744
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=146.91 Aligned_cols=182 Identities=21% Similarity=0.283 Sum_probs=126.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEecccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEV 365 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~l 365 (957)
+.|.|.+++++.|..++...+. +-.++..++|+|+||||||++++.+..++ ...+++|||..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 5789999999999998765533 22233445699999999999999998765 256789999654
Q ss_pred ccccc----------------c-hhHHHHHHHHHHHhc--cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 366 VSQNY----------------G-ESEQALHEVFDSASQ--SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 366 ~~~~~----------------g-e~e~~i~~vf~~a~~--~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
...+. | .....+..+|..... ....||+|||||.|.... +.++-.|+.+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~-- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT-- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh--
Confidence 33210 1 122345566665422 235699999999997532 233333444332
Q ss_pred ccCCCeEEEEecCC---CCCchhhhhCCCCcce-eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcC
Q 002169 427 CRTDGVLVIAATNR---PDSIEPALRRPGRLDR-EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH 496 (957)
Q Consensus 427 ~~~~~v~vI~ttN~---~~~ld~al~r~gRfd~-~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~ 496 (957)
.....++||+++|. ++.++|.+++ ||.. +|.|++++.+++.+||+..+......+++..++.+|....
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 13456899999986 4567788888 5543 4889999999999999998886555678888888887544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-12 Score=134.82 Aligned_cols=181 Identities=8% Similarity=0.105 Sum_probs=115.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~ 757 (957)
..++||||||||||+|++|+|+++ +.....+...+. ......+++... +..+|+|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 347999999999999999999886 233333333211 111123333332 34699999999874321
Q ss_pred CCCCCcchHHHHHHHHHHHhccccCCcEE-EEEecCCCCCC---ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC
Q 002169 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKI---DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP 833 (957)
Q Consensus 758 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~-VI~aTN~~~~i---d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~ 833 (957)
... ..++..++.....+..+ |+.++..|..+ .+.+.++.++...+.++.|+.+++.+|++..+...+
T Consensus 108 ------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 111 23444444443333334 44455556554 488988445567889999999999999998887655
Q ss_pred CC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 834 CS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 834 ~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+. .+.-+..|++...| +.+.+..+++.....+..+ ...||...+++++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA---QRKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHhc
Confidence 54 33456788888887 7888888887653333322 34689888887663
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-12 Score=140.88 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=124.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+++++.|.+.+++.++..+... ..+..++|+||||+|||++|++++++++.+++.+++.+ .. ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 457889999999999999886421 22445666999999999999999999999999999876 22 22
Q ss_pred hhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhC
Q 002169 372 ESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450 (957)
Q Consensus 372 e~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r 450 (957)
.....+........ ...+.+|+|||+|.+.. ......|...++.. ..++.+|+++|.++.+.+++++
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCChhhchHHHHh
Confidence 22222322222211 13478999999998721 11234455566654 3567889999999999999998
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHc-------CCCCCCChHHHHHHHHHcCC
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLS-------GMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~-------~~~~~l~~~~l~~La~~t~g 497 (957)
||. .+.++.|+.+++.++++..+. ..+..+++..+..++....|
T Consensus 151 --R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 151 --RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred --hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 884 589999999999877664332 33556677777888876554
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=134.47 Aligned_cols=202 Identities=12% Similarity=0.203 Sum_probs=130.3
Q ss_pred ccccccC--ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 643 VKWEDVG--GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 643 v~~~di~--G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
.+|++.+ +...+.+.+++++. ...+.+++|+||+|||||++|++++.++ +.+++.+++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3455554 45566666666542 2346679999999999999999999876 4677888876654
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CCCC
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK 796 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~~~ 796 (957)
... ..++.... .+.+|+|||+|.+.... .....+...++....... .+|++++ .+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 321 23333322 23599999999873210 112234444443322223 4555555 3333
Q ss_pred C---ChhhhCCCCc--ceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 797 I---DPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 797 i---d~aLlr~gRf--d~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+ ++.+.+ || ...+.+++|+.+++..+++....+.++. .+..+..|+....| +.+++.++++++...+..+
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~- 212 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAA- 212 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 2 267776 65 4688999999999999999877655543 33346777776555 8999999999877655543
Q ss_pred cCCCCCCHHHHHHHH
Q 002169 871 LDASRITMQHLKTAI 885 (957)
Q Consensus 871 ~~~~~It~~d~~~al 885 (957)
...|+.+.+.+.+
T Consensus 213 --~~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 --KRKITIPFVKEVL 225 (226)
T ss_pred --CCCCCHHHHHHHh
Confidence 3568888777665
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.2e-12 Score=151.93 Aligned_cols=135 Identities=25% Similarity=0.315 Sum_probs=89.7
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc------ccccc-----cchHHHHHHHHHHHHhCCCeEEEEe
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL------FSKWV-----GESEKAVRSLFAKARANAPSIIFFD 746 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l------~~~~v-----g~~~~~ir~~f~~A~~~~p~ILfiD 746 (957)
...+++||-|.||+|||+++.|+|++.|...++++.++- ++.++ |++.-.-..++...+.+. .+++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~--WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG--WVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC--EEEee
Confidence 456889999999999999999999999999999998753 33222 211111123344444443 99999
Q ss_pred CCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc------------ccCCcEEEEEecCCCC------CCChhhhCCCCcc
Q 002169 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL------------HQRVNVTVIAATNRPD------KIDPALLRPGRFD 808 (957)
Q Consensus 747 Eid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~------------~~~~~v~VI~aTN~~~------~id~aLlr~gRfd 808 (957)
|+.- ++..++..|=..||.. ....+.+|.+|-|..+ .++..++. ||.
T Consensus 1619 EiNL-------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271 1619 EINL-------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred hhhh-------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh
Confidence 9862 2333444444444432 1234677777777554 47888888 995
Q ss_pred eecccCCCCHHHHHHHHHHHHh
Q 002169 809 RLLYVGPPNETDREEIFRIHLR 830 (957)
Q Consensus 809 ~~i~~~~P~~~er~~Il~~~l~ 830 (957)
++++..++..+..+|......
T Consensus 1684 -vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 -VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred -eEEecccccchHHHHHHhhCC
Confidence 778888888777777765554
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=151.24 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=138.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|+++.|.+..++.|++++... +.+..+||+||+||||||+|+++|+.+.+.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 4567899999999999999986433 224467999999999999999999988642
Q ss_pred ---------------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHH
Q 002169 357 ---------------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVA 417 (957)
Q Consensus 357 ---------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~ 417 (957)
++.+++.+ ...-..++++.+.+.. ....|++|||+|.|.. ...+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HHHH
Confidence 22232211 0112346666665432 2246999999999842 2356
Q ss_pred HHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 418 TLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 418 ~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.|+..|+. ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+.+.+..+++..++.++..+.|
T Consensus 143 aLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G 217 (618)
T PRK14951 143 AMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG 217 (618)
T ss_pred HHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 68888876 34567888888888899989988 65 458999999999999999998888888889999999998876
Q ss_pred CcHHHHHHHHHHHH
Q 002169 498 FVGADLAALCNEAA 511 (957)
Q Consensus 498 ~~gaDi~~l~~~A~ 511 (957)
+.+++.+++..+.
T Consensus 218 -slR~al~lLdq~i 230 (618)
T PRK14951 218 -SMRDALSLTDQAI 230 (618)
T ss_pred -CHHHHHHHHHHHH
Confidence 5566666665443
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=151.41 Aligned_cols=205 Identities=18% Similarity=0.225 Sum_probs=144.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
++...+|++|+|++++++.|+.++.. -+.+..+||+||+|+|||++|+++|+.++..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45667899999999999999887752 1334558999999999999999999887531
Q ss_pred --------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 708 --------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 708 --------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++.++... ......+|.+.+.+.. ....|+||||+|.|. ...+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-------------~~a~ 137 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-------------TAAF 137 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-------------HHHH
Confidence 22222211 1123445666655433 234699999999763 3456
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+..+.+.+.+.+ |+. .+.|..++..+...+++..+.+.++. .+..+..++..+.
T Consensus 138 naLLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 138 NALLKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7788888864 3467788888888888888887 764 78899999999998888888776654 3344677888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
| +.+++.+.++..+.. ....|+.+++...+.
T Consensus 213 G-dlr~al~~LekL~~y------~~~~It~e~V~~ll~ 243 (585)
T PRK14950 213 G-SMRDAENLLQQLATT------YGGEISLSQVQSLLG 243 (585)
T ss_pred C-CHHHHHHHHHHHHHh------cCCCCCHHHHHHHhc
Confidence 7 777777777754432 134577777665443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=145.40 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=142.0
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCc-ceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeC
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTG-ILMFGPPGCSKTLMARAVASEA----------GLNFLAVKG 713 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~g-iLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~ 713 (957)
-+.+.|.++..++|..++.-.+. + ..+.+ ++++|+||||||++++.+.+++ ...++.|+|
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 36789999999999888753221 1 22334 4699999999999999998765 256788998
Q ss_pred CCccccc----------------cc-chHHHHHHHHHHHH--hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHH
Q 002169 714 PELFSKW----------------VG-ESEKAVRSLFAKAR--ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 774 (957)
Q Consensus 714 ~~l~~~~----------------vg-~~~~~ir~~f~~A~--~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~ 774 (957)
..+...+ .| .....+..+|.... .....||+|||||.|... ...++-.|+.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR 894 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFD 894 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------HHHHHHHHHH
Confidence 6543221 01 12234455665542 233569999999998642 1233333444
Q ss_pred HHhccccCCcEEEEEecCCC---CCCChhhhCCCCcce-ecccCCCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHcc-
Q 002169 775 ELDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRKIP-CSSDVNIRELACLSE- 848 (957)
Q Consensus 775 ~ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~-~i~~~~P~~~er~~Il~~~l~~~~-~~~~~~l~~la~~t~- 848 (957)
... .....+.||+++|.. +.+++.+.+ ||.. .|.|++++.+++.+||+..+.... ...+..+..+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 332 234578999999864 456788887 6643 478899999999999999988642 223344566666333
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 849 --GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 849 --g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
| ..|.+..+|+.|+..+ ....|+.+|+.+|+.++..
T Consensus 971 ~SG-DARKALDILRrAgEik-----egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 971 VSG-DIRKALQICRKAFENK-----RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred cCC-HHHHHHHHHHHHHhhc-----CCCccCHHHHHHHHHHHHh
Confidence 4 4555666676666532 2457999999999877543
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=141.61 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=133.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccccccc--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQ-- 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~-- 368 (957)
+.+.|-+++++.|...+..... + ..+..++|+||||||||++++.+++++ +..++.++|....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3578999999999888754321 1 235679999999999999999999876 467889998654221
Q ss_pred --------ccc--------hhHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 369 --------NYG--------ESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 369 --------~~g--------e~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
..+ ..+..+..+.+.... ..+.||+|||+|.+.... + ...+..|+..++... ..+
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--~-----~~~l~~l~~~~~~~~-~~~ 173 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--G-----NDVLYSLLRAHEEYP-GAR 173 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--C-----chHHHHHHHhhhccC-CCe
Confidence 001 112223333333332 346799999999997211 1 134455655555442 236
Q ss_pred eEEEEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcCC--CCCCChHHHHHHHHHcCCCc--HHHH
Q 002169 432 VLVIAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSGM--EHSLLDSEVEYLSMATHGFV--GADL 503 (957)
Q Consensus 432 v~vI~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~~--~~~l~~~~l~~La~~t~g~~--gaDi 503 (957)
+.+|+++|..+ .+++.+++ ||. ..|.+++++.++..+|++..++.- ...+++..++.+++.+.+.. .+.+
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 88999988764 46677766 553 468999999999999999887542 23467778888888774432 2344
Q ss_pred HHHHHHHHHHHH
Q 002169 504 AALCNEAALVCL 515 (957)
Q Consensus 504 ~~l~~~A~~~a~ 515 (957)
..+|..|+..|.
T Consensus 252 ~~ll~~a~~~a~ 263 (394)
T PRK00411 252 IDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHH
Confidence 456666655554
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=149.07 Aligned_cols=172 Identities=17% Similarity=0.275 Sum_probs=120.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+... .+++|+|||+|.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4579999999999999999999877 5678889988776544322211 1112222222 357999999998864
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+. .....|+..++.+...+..+||.+...|.. +++.+++ ||.. .+.++.|+.++|.+|++..+.
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 32 122346666666544445555555555554 5577887 8864 689999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+..+++..++.+|.+..+ +.+++..+++.....+
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 88899999999999988765 4566666666544333
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-12 Score=155.03 Aligned_cols=185 Identities=19% Similarity=0.242 Sum_probs=135.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+.++... +.+..+||+||+|||||++|++||+.+.+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 4567899999999999998886432 224458999999999999999999988642
Q ss_pred ------------EEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHH
Q 002169 357 ------------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 420 (957)
Q Consensus 357 ------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll 420 (957)
++.+++.+.. .-..++.+.+.+ ......|+||||+|.|.. ...+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHHHH
Confidence 2333332211 112334433322 234567999999999842 3456788
Q ss_pred HHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 421 NLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 421 ~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
+.|++. ...++||++|+.++.|.+.+++ |+ ..++|..++.++..++|+.++...++.+++..+..+++...| +.
T Consensus 142 K~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dl 215 (824)
T PRK07764 142 KIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SV 215 (824)
T ss_pred HHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888874 4578888889888999999998 65 458999999999999999998888888888888988888776 44
Q ss_pred HHHHHHHHH
Q 002169 501 ADLAALCNE 509 (957)
Q Consensus 501 aDi~~l~~~ 509 (957)
+++..+++.
T Consensus 216 R~Al~eLEK 224 (824)
T PRK07764 216 RDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=142.03 Aligned_cols=219 Identities=18% Similarity=0.281 Sum_probs=149.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh--hh---cCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL--SS---LGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QN 369 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~--~~---l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~ 369 (957)
.+.|+++.++.+...+......-.. .. -++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3799999999988776433222100 00 011 12468999999999999999999999999999999887753 46
Q ss_pred cchh-HHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccc-----------cCC
Q 002169 370 YGES-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVC-----------RTD 430 (957)
Q Consensus 370 ~ge~-e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~-----------~~~ 430 (957)
+|+. +..+..+++.+ ....++||||||+|.+.+++.... +.....+...|+..|++.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 44455555432 234578999999999987643321 1112357778888887642 123
Q ss_pred CeEEEEecCCC---------------------------C-----------------------CchhhhhCCCCcceeeee
Q 002169 431 GVLVIAATNRP---------------------------D-----------------------SIEPALRRPGRLDREIEI 460 (957)
Q Consensus 431 ~v~vI~ttN~~---------------------------~-----------------------~ld~al~r~gRfd~~I~i 460 (957)
+.++|.|+|-. + .+.|+|. ||+|..+.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 46778777751 0 0224444 499999999
Q ss_pred cCCCHHHHHHHHHHH----Hc---------CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILHAL----LS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~----l~---------~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
...+.+++.+|+... ++ +..+.+++..++.+++. ...+-++.|+.+++...+..+-.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999998652 22 33455688899999987 45667788888888776666544
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-12 Score=147.61 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=135.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
....|+++.|.+.+++.|+.++... ..+..+||+|||||||||+|+++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 4567899999999999999886432 23445799999999999999999988743
Q ss_pred --------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 356 --------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 356 --------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
.++.+++.+- .....++.+.+.+. ...+.|++|||+|.+. ....+.|+..|
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHHH
Confidence 1444444311 11234555544332 2346799999998763 23456677777
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.. ..++++|++++.++.+.+.+++ |+. .++|..|+.++..+.++..+...+..+++..++.++..+.|- .+++
T Consensus 141 Eep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR~a 214 (504)
T PRK14963 141 EEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MRDA 214 (504)
T ss_pred HhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHH
Confidence 763 3567888889989999999988 654 589999999999999999998888888899999999988763 3444
Q ss_pred HHHHHH
Q 002169 504 AALCNE 509 (957)
Q Consensus 504 ~~l~~~ 509 (957)
.++++.
T Consensus 215 ln~Lek 220 (504)
T PRK14963 215 ESLLER 220 (504)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=147.80 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=135.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+.++... +.+..+||+||+||||||+|+++|+.+.+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 3567899999999999999986432 234457999999999999999999887531
Q ss_pred ------------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHH
Q 002169 357 ------------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 420 (957)
Q Consensus 357 ------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll 420 (957)
++++++.+.. .-..++++.+.+. .....|+||||+|.+.. ...+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHHHH
Confidence 2333332211 1223444444332 23456999999998842 3556788
Q ss_pred HHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 421 NLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 421 ~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
..|+.. ...+++|++|+.++.+.+.+++ |. ..++|..++.++..+.+..++...+..+++..+..++..+.| ..
T Consensus 140 K~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dl 213 (584)
T PRK14952 140 KIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SP 213 (584)
T ss_pred HHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888873 4578899999999999999998 64 458999999999999999998888888888888888877654 44
Q ss_pred HHHHHHHHHH
Q 002169 501 ADLAALCNEA 510 (957)
Q Consensus 501 aDi~~l~~~A 510 (957)
+++.++++..
T Consensus 214 R~aln~Ldql 223 (584)
T PRK14952 214 RDTLSVLDQL 223 (584)
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=146.54 Aligned_cols=187 Identities=21% Similarity=0.298 Sum_probs=135.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|+++.|.+..++.|...+... +.+..+||+||+||||||+|+++|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4567899999999999988886432 22445899999999999999999998754
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++..- .| -..++.+++.+. .....|+||||+|.+. ....+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHHH
Confidence 2333332111 11 123455555443 2345799999999874 2355678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. .+.+++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+.+.+..+++..+..++..+.| +.++
T Consensus 143 LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~ 216 (546)
T PRK14957 143 LEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRD 216 (546)
T ss_pred HhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8873 4567788888888889888888 66 458999999999999999888887888889999999988865 4455
Q ss_pred HHHHHHHHH
Q 002169 503 LAALCNEAA 511 (957)
Q Consensus 503 i~~l~~~A~ 511 (957)
+..++..+.
T Consensus 217 alnlLek~i 225 (546)
T PRK14957 217 ALSLLDQAI 225 (546)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=138.38 Aligned_cols=207 Identities=23% Similarity=0.272 Sum_probs=140.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeCC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGP 714 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~~ 714 (957)
..+.+|++++|++++++.+..++.. ....+++|+||||||||++|+++++++. .+++.++.+
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 4557899999999999999888752 1123589999999999999999999873 345555544
Q ss_pred CcccccccchHHHHHHHHH-HHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 715 ELFSKWVGESEKAVRSLFA-KARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~-~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
+... ...++..+. .+.. ..+.+|+|||+|.+.. ...+.|+..++.... ...+|
T Consensus 78 ~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~~--~~~lI 136 (319)
T PRK00440 78 DERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-------------DAQQALRRTMEMYSQ--NTRFI 136 (319)
T ss_pred cccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-------------HHHHHHHHHHhcCCC--CCeEE
Confidence 3211 111222222 1211 2356999999997732 234456666765433 45677
Q ss_pred EecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 002169 789 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 867 (957)
Q Consensus 789 ~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~ 867 (957)
+++|.+..+.+++.+ |+. ++.|++++.++...+++.++.+.+.. .+..+..++..+.| +.+.+.+.++.++..
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-- 210 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc--
Confidence 788888888888888 774 68999999999999999988877653 34457778888776 455555555543321
Q ss_pred HHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 868 EENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 868 ~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
...||.+++..++....+.
T Consensus 211 -----~~~it~~~v~~~~~~~~~~ 229 (319)
T PRK00440 211 -----GKEVTEEAVYKITGTARPE 229 (319)
T ss_pred -----CCCCCHHHHHHHhCCCCHH
Confidence 3468888888777654443
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=132.04 Aligned_cols=200 Identities=12% Similarity=0.155 Sum_probs=130.8
Q ss_pred CccccccC--ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCc
Q 002169 642 KVKWEDVG--GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL 716 (957)
Q Consensus 642 ~v~~~di~--G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l 716 (957)
..+|++++ +...+...+.++.. +.....+++|+||+|||||++|++++++. +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 45667655 33455555555443 22345679999999999999999999875 567777777654
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC-
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD- 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~- 795 (957)
... +. ......+|+|||+|.+.. .....|+..++........++|++++.+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~-------------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDD-------------AQQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCc-------------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 211 11 122356999999997631 11234455555443343434555554332
Q ss_pred --CCChhhhCCCCc--ceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 796 --KIDPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 796 --~id~aLlr~gRf--d~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+.+.+.+ || ...+.+++|+.+++..+++....+.++.- +..+..|++...| +.+++..+++.....|...
T Consensus 135 ~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~- 210 (227)
T PRK08903 135 ALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ- 210 (227)
T ss_pred hCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 24577776 66 46889999999999999988776655442 3356777887776 8899999998755444433
Q ss_pred cCCCCCCHHHHHHHHH
Q 002169 871 LDASRITMQHLKTAIR 886 (957)
Q Consensus 871 ~~~~~It~~d~~~al~ 886 (957)
...||...+++++.
T Consensus 211 --~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 --KRPVTLPLLREMLA 224 (227)
T ss_pred --CCCCCHHHHHHHHh
Confidence 46799988888875
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=131.98 Aligned_cols=183 Identities=22% Similarity=0.309 Sum_probs=126.3
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHH
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQ 375 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~ 375 (957)
++.+..++.++.++. ...+.+++|+||+|||||++|++++.+. +.+++.+++.++....
T Consensus 20 ~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------ 81 (226)
T TIGR03420 20 GGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------ 81 (226)
T ss_pred CCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence 456677777777642 2346789999999999999999999876 4678889888775321
Q ss_pred HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCCch---hhhhCC
Q 002169 376 ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSIE---PALRRP 451 (957)
Q Consensus 376 ~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~ld---~al~r~ 451 (957)
..+++... .+.+|+|||+|.+.... .....|..+++.....+. .+|++++ .+..++ +.+.+
T Consensus 82 --~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~~~~~~~~L~~- 146 (226)
T TIGR03420 82 --PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQLPLRLPDLRT- 146 (226)
T ss_pred --HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCC-eEEEECCCChHHCCcccHHHHH-
Confidence 23333322 24599999999874321 112345555555433333 4455554 343322 66766
Q ss_pred CCc--ceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 452 GRL--DREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 452 gRf--d~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
|+ ...+.++.|+.+++..+++.++.+....+++..++.|+.. -+-+.+++..+++++...+.+
T Consensus 147 -r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 147 -RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred -HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 55 4678999999999999999888777778899999999995 566788888888876544433
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=146.95 Aligned_cols=185 Identities=17% Similarity=0.263 Sum_probs=135.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
++.+|+++.|.+..++.|...+... ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3467889999999999988875321 23467999999999999999999988743
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++.+. -.-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHHHH
Confidence 2333433221 112235566554432 2346999999998842 234678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+++|++|+.++.+.+++++ |+. .++|..++.++....++..+...+..+++..++.++..+.| ..++
T Consensus 143 LEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~ 216 (605)
T PRK05896 143 LEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRD 216 (605)
T ss_pred HHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 8873 4578888899889999999998 664 48999999999999999988888878889999999998876 3455
Q ss_pred HHHHHHH
Q 002169 503 LAALCNE 509 (957)
Q Consensus 503 i~~l~~~ 509 (957)
+..+++.
T Consensus 217 AlnlLek 223 (605)
T PRK05896 217 GLSILDQ 223 (605)
T ss_pred HHHHHHH
Confidence 4455444
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=142.64 Aligned_cols=179 Identities=22% Similarity=0.317 Sum_probs=124.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHh--------CCCeEEEEeCCch
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARA--------NAPSIIFFDEIDG 750 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~--------~~p~ILfiDEid~ 750 (957)
+.+-+||+||||-||||||+.||+++|+.++.||+++-. +...++..+..|.. ..|..|++||||.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 334488999999999999999999999999999998853 34445555555433 5688999999992
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHhccc------cC----------C---cEEEEEecCCCCCCChhhhCCCCcceec
Q 002169 751 LAAIRGKESDGVSVSDRVMSQLLVELDGLH------QR----------V---NVTVIAATNRPDKIDPALLRPGRFDRLL 811 (957)
Q Consensus 751 l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------~~----------~---~v~VI~aTN~~~~id~aLlr~gRfd~~i 811 (957)
.....++.++..+.... +. . -.-||+++|+... |||+.---|..+|
T Consensus 399 -------------a~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 399 -------------APRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEII 463 (877)
T ss_pred -------------CcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEE
Confidence 23555666666655110 00 0 1348999996544 6664222578899
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 002169 812 YVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK 882 (957)
Q Consensus 812 ~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~ 882 (957)
+|++|...-..+-|+..+.+.++..+ ..+.+|+++|++ ||+.+++.....|....-....+...++-
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r~ds~i~~~~i~ 531 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVDRRDSSISVKLIC 531 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 99999988888888888877776544 245666666666 99999999888876654322334444443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-12 Score=146.45 Aligned_cols=191 Identities=15% Similarity=0.249 Sum_probs=126.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchH-HHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESE-KAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~-~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
..+++||||+|||||.|++++|+++ +..++.+++.+++..+..... ..+.. |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3469999999999999999999875 356777777666544322111 11222 2222223578999999998753
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~ 828 (957)
.. .....++..++.+......+||++.+.|.. +++.+.+ ||. .++.+.+|+.+.|..|++..
T Consensus 209 ~~-----------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 209 KT-----------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred cH-----------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 21 122334444444444444455555566655 4567777 763 47789999999999999998
Q ss_pred HhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 829 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 829 l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+...++. ++..+..+|+...| +.|++..++......+... ...||.+..+++++..
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~---~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT---GEEVDLKEAILLLKDF 332 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHH
Confidence 8754443 33347778888876 8899999998766555443 3568888887777754
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=140.40 Aligned_cols=185 Identities=23% Similarity=0.342 Sum_probs=135.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 356 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--------------- 356 (957)
+..|+++.|.+..++.|.+.+... ..+..+||+||||+|||++|+++|+.+...
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 356889999999999998876322 234578999999999999999999887432
Q ss_pred ---------EEEEecccccccccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 357 ---------LFTVNGPEVVSQNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 357 ---------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
++.+++.+ ......++.+++.+... ...|++|||+|.+.. ...+.|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll~~l 141 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALLKTL 141 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHHHHH
Confidence 33333321 11233466777765432 346999999988732 2345677777
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.. ..++++|++|+.++.+.+++++ |+. .++++.|+.++..+++...+...+..+++..+..++..+.| ..+.+
T Consensus 142 e~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a 215 (355)
T TIGR02397 142 EEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDA 215 (355)
T ss_pred hCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHH
Confidence 663 4567888888888888899988 764 58999999999999999999888888889999999988766 44444
Q ss_pred HHHHHHH
Q 002169 504 AALCNEA 510 (957)
Q Consensus 504 ~~l~~~A 510 (957)
.+.++.+
T Consensus 216 ~~~lekl 222 (355)
T TIGR02397 216 LSLLDQL 222 (355)
T ss_pred HHHHHHH
Confidence 4444443
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=130.35 Aligned_cols=179 Identities=12% Similarity=0.140 Sum_probs=114.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~ 757 (957)
..++||||+|||||+|+++++++.. .....+...+... ....+++.... ..+|+|||++.+....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4799999999999999999998764 2333333322111 11122222222 2489999999874221
Q ss_pred CCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhc
Q 002169 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 758 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
.....+...++.....++..+|++|+ .|.. +.|.|.+ |+. .++.+.+|+.+++.++++.....
T Consensus 114 ---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 114 ---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred ---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 11122333333333333444555554 4444 5799998 875 68899999999999999987766
Q ss_pred CCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 832 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 832 ~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.++. .+.-++.|++...| +.+.+..+++.....+..+ ...||...+++++.
T Consensus 183 ~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~k~~l~ 234 (235)
T PRK08084 183 RGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA---QRKLTIPFVKEILK 234 (235)
T ss_pred cCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHc
Confidence 5544 33457788888887 8888888888743333332 45689888887653
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=147.13 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=130.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+.++... +....+||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 4567889999999999999886432 123579999999999999999999988652
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++..-. .-..++.+.+.+ ......||||||+|.+. ....+.|+..
T Consensus 80 ~~i~~g~hpDv~eId~a~~~------~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~ 142 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNR------GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKT 142 (624)
T ss_pred HHHhcCCCCceEEEeccccc------CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHH
Confidence 3444432110 112233332222 22345799999999884 2345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|+.. ...+++|++|+.++.+.+.+++ |+. .++|..++.++..++|+..+...+..+++..++.++..+.|-.
T Consensus 143 LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 143 LEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred hhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8763 4578899999998999988888 763 5899999999999999998888888889999999999887643
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-12 Score=148.31 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=137.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|...+... +.+..+||+||+||||||+|+++|+.+.+.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 3467899999999999998886432 224568999999999999999999988652
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++.+++.. ......++.+++.+.. ....|+||||+|.+. ....+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 22232211 1123356677766542 235699999999884 2345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+.+|++|+.++.+.+.+++ |+ ..++|..++.++..+.+...+.+.+..+++..+..++..+.| +.++
T Consensus 143 LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~ 216 (527)
T PRK14969 143 LEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRD 216 (527)
T ss_pred HhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8873 4578888888888888888887 65 458999999999999998888777777788889999988765 4566
Q ss_pred HHHHHHHHH
Q 002169 503 LAALCNEAA 511 (957)
Q Consensus 503 i~~l~~~A~ 511 (957)
+.+++..+.
T Consensus 217 al~lldqai 225 (527)
T PRK14969 217 ALSLLDQAI 225 (527)
T ss_pred HHHHHHHHH
Confidence 666666553
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=144.81 Aligned_cols=169 Identities=14% Similarity=0.230 Sum_probs=117.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++||||||||||+|++++++++ +..++++++.++...+...... .+.. |.......+++|+|||++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999875 4577888888776554322111 1112 2222223578999999998854
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+. .....|+..++.+...+..+||++.+.|.. +.+.+++ ||. ..+.+..|+.+.|.+|++..+.
T Consensus 209 ~~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 209 KT---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred cH---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 32 122345566666544555555555566655 4567777 664 4678999999999999999998
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+..++++.++.+++...| ..+.|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 88888999999999998776 445565555543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=132.78 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=108.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD 406 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~ 406 (957)
..++||||||||||+|++++|+++ +....+++..+. ......+++... ..++|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 457999999999999999999875 334444443221 111123333332 35699999999885432
Q ss_pred CCchHHHHHHHHHHHHhhccccCCCeEEEE-ecCCCCCch---hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCC
Q 002169 407 GGEELSQRMVATLLNLMDGVCRTDGVLVIA-ATNRPDSIE---PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS 482 (957)
Q Consensus 407 ~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~-ttN~~~~ld---~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~ 482 (957)
.....|+.+++.....++.++|. ++..|..++ +.++++.++...+.++.|+.+++.+|++..+...+..
T Consensus 108 -------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 108 -------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 12234666676665445444444 445566554 7888855556678999999999999999998888888
Q ss_pred CChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 483 LLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 483 l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
++++.++.|+.+..|-. +.+..++.
T Consensus 181 l~~~v~~~L~~~~~~d~-r~l~~~l~ 205 (229)
T PRK06893 181 LSDEVANFLLKRLDRDM-HTLFDALD 205 (229)
T ss_pred CCHHHHHHHHHhccCCH-HHHHHHHH
Confidence 99999999999887633 33443333
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8e-12 Score=141.12 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=148.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhh-hcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccc-h
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLS-SLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYG-E 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~-~l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~g-e 372 (957)
.|.|+++.++.+...+.....+..+. .+.. ..+.++||+||||||||++|+++|..++.+|+.+++.++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 38999999999988875432221111 1111 13589999999999999999999999999999999988875 5777 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 002169 373 SEQALHEVFDSAS------------------------------------------------------------------- 385 (957)
Q Consensus 373 ~e~~i~~vf~~a~------------------------------------------------------------------- 385 (957)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5666677666650
Q ss_pred ---c--------------------------------------------------------------------cCCeEEEE
Q 002169 386 ---Q--------------------------------------------------------------------SAPAVVFI 394 (957)
Q Consensus 386 ---~--------------------------------------------------------------------~~p~IL~I 394 (957)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cCccccccCCcCCCch-HHHHHHHHHHHHhhcc--------ccCCCeEEEEec----CCCCCchhhhhCCCCcceeeeec
Q 002169 395 DELDAIAPARKDGGEE-LSQRMVATLLNLMDGV--------CRTDGVLVIAAT----NRPDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 395 DEiD~l~~~~~~~~~~-~~~~i~~~Ll~~ld~l--------~~~~~v~vI~tt----N~~~~ld~al~r~gRfd~~I~i~ 461 (957)
||+|.|+.+.+..+.+ ....+...||.++++- -...++.||++. ..|+++-|.|. |||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 9999999775433323 3345778899999883 334677888765 24556667775 4999999999
Q ss_pred CCCHHHHHHHHHH----HHc---------CCCCCCChHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Q 002169 462 VPSPAQRLEILHA----LLS---------GMEHSLLDSEVEYLSMATH-------GFVGADLAALCNEAA 511 (957)
Q Consensus 462 ~P~~~~r~~Il~~----~l~---------~~~~~l~~~~l~~La~~t~-------g~~gaDi~~l~~~A~ 511 (957)
.++.++...||.. +++ +..+.+++..++.+|+.+. +.-.+-|..++....
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 9999999998832 222 2345567777888877643 333344555555443
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=129.55 Aligned_cols=130 Identities=25% Similarity=0.319 Sum_probs=92.5
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC------------CCCCChhhhCCCCc
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 807 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~------------~~~id~aLlr~gRf 807 (957)
|.||||||+|.| .-+.++-|-+.|+. .---+||+|||+ |+-|+..|+. |+
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl 353 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL 353 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he
Confidence 679999999866 12223333334442 222367888886 4567888888 76
Q ss_pred ceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 808 DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 808 d~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
-+|...+++.++.++|+++......+. .+..++.|+.....-|-|=..+++.-|...|.++. ...|..+|++.|..
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--~~~V~~~dVe~a~~ 430 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--SKRVEVEDVERAKE 430 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC--CCeeehhHHHHHHH
Confidence 477888999999999999999776654 34457788887776666777777777888887775 66789999998876
Q ss_pred hhCC
Q 002169 887 HVQP 890 (957)
Q Consensus 887 ~~~p 890 (957)
-...
T Consensus 431 lF~D 434 (450)
T COG1224 431 LFLD 434 (450)
T ss_pred HHhh
Confidence 5543
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=139.17 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=147.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh-hhc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccc-h
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL-SSL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYG-E 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~-~~l-~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~g-e 372 (957)
-+.|+++.++.+...+.....+..+ ..+ .-.++++|||+||||||||++|+++|..++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3889999999998776554332111 111 1224689999999999999999999999999999999988874 6777 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 002169 373 SEQALHEVFDSAS------------------------------------------------------------------- 385 (957)
Q Consensus 373 ~e~~i~~vf~~a~------------------------------------------------------------------- 385 (957)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6676676666540
Q ss_pred ------------------------------------------------------------------------ccCCeEEE
Q 002169 386 ------------------------------------------------------------------------QSAPAVVF 393 (957)
Q Consensus 386 ------------------------------------------------------------------------~~~p~IL~ 393 (957)
..+-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01245999
Q ss_pred EcCccccccCCcCCCch-HHHHHHHHHHHHhhcc--------ccCCCeEEEEecC----CCCCchhhhhCCCCcceeeee
Q 002169 394 IDELDAIAPARKDGGEE-LSQRMVATLLNLMDGV--------CRTDGVLVIAATN----RPDSIEPALRRPGRLDREIEI 460 (957)
Q Consensus 394 IDEiD~l~~~~~~~~~~-~~~~i~~~Ll~~ld~l--------~~~~~v~vI~ttN----~~~~ld~al~r~gRfd~~I~i 460 (957)
|||+|.++.+....+.+ ....+...||.++++- -...++.||++.- .|.++-|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999999765333322 3345778899999883 2346678887653 4556667775 599999999
Q ss_pred cCCCHHHHHHHHH----HHHc---------CCCCCCChHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILH----ALLS---------GMEHSLLDSEVEYLSMATH-------GFVGADLAALCNEAA 511 (957)
Q Consensus 461 ~~P~~~~r~~Il~----~~l~---------~~~~~l~~~~l~~La~~t~-------g~~gaDi~~l~~~A~ 511 (957)
..++.++...||. .+++ +..+.+++..++.+|+.+. +.-.+-|..++....
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 9999999999883 1221 2344567777777777642 333344555554443
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=148.07 Aligned_cols=186 Identities=20% Similarity=0.275 Sum_probs=138.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 4567899999999999999886432 234568999999999999999999987542
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++.+- ..-..++.+.+.+.. ....|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHHHH
Confidence 334443221 112345666655432 2246999999998842 345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ..++++|++|+.++.|.+.+++ |+. .++|..++.++....+...+.+.+..+++..+..++..+.| +.++
T Consensus 143 LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~ 216 (576)
T PRK14965 143 LEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRD 216 (576)
T ss_pred HHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8873 4578899999999999999998 653 48899999999999999888888888899999999998887 3455
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
+.+++..+
T Consensus 217 al~~Ldql 224 (576)
T PRK14965 217 SLSTLDQV 224 (576)
T ss_pred HHHHHHHH
Confidence 55555443
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=145.42 Aligned_cols=187 Identities=20% Similarity=0.279 Sum_probs=138.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
-.+.+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 34567899999999999998886432 234569999999999999999999987542
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+. ....+.|+.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK 141 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLK 141 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHH
Confidence 22232211 011234455554332 2346799999999883 234567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.++. ....+++|++|+.++.+.+++++ |+. .++|..++.++..++++..+...+..+++..+..++....| ..+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8876 34678888888888999999998 764 48899999999999999988888888899999999998877 556
Q ss_pred HHHHHHHHH
Q 002169 502 DLAALCNEA 510 (957)
Q Consensus 502 Di~~l~~~A 510 (957)
++..++..+
T Consensus 216 ~alslLdkl 224 (563)
T PRK06647 216 DAYTLFDQV 224 (563)
T ss_pred HHHHHHHHH
Confidence 666666544
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=129.16 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=106.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
+.+++|+||||||||+|++++++++. ..+.+++..+... ...++++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-
Confidence 45899999999999999999998653 3455555433211 11222222222 2599999999885321
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEec-CCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT-NRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGM 479 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt-N~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~ 479 (957)
.....|+.+++.....++..+|+|+ ++|.. +.|.+++ |+. ..+.+..|+.+++.++++......
T Consensus 114 --------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 --------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred --------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 2223455555554444444444444 55554 5689998 774 568999999999999999878777
Q ss_pred CCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 480 EHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 480 ~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..++++.++.|+.+..|- .+.+..++..
T Consensus 184 ~~~l~~~v~~~L~~~~~~d-~r~l~~~l~~ 212 (235)
T PRK08084 184 GFELPEDVGRFLLKRLDRE-MRTLFMTLDQ 212 (235)
T ss_pred CCCCCHHHHHHHHHhhcCC-HHHHHHHHHH
Confidence 8889999999999998764 3444444443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=127.53 Aligned_cols=167 Identities=23% Similarity=0.364 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+.+... ..++|+||+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 4569999999999999999999764 5678899888876654322211 1222223332 346999999999853
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~ 477 (957)
..+....|..+++.+...++.+||.+...|.. +++.+++ ||.. .+.+..|+.+.|.+|++..+.
T Consensus 112 ---------~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 ---------KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 23456678888888766767666666566664 4577877 7654 689999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
..+..++++.++.|+.+..+ +.++|..++..
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 99999999999999998754 45566655554
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=133.70 Aligned_cols=133 Identities=21% Similarity=0.289 Sum_probs=94.5
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC------cccccccchHHHHH--------------------HHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------LFSKWVGESEKAVR--------------------SLFA 733 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~------l~~~~vg~~~~~ir--------------------~~f~ 733 (957)
..+++|+||||||||++|+++|..++.+++.+++.. +++.|.+....... ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998754 33333322111110 0112
Q ss_pred HHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------------cCCcEEEEEecCCCC----
Q 002169 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------------QRVNVTVIAATNRPD---- 795 (957)
Q Consensus 734 ~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------------~~~~v~VI~aTN~~~---- 795 (957)
.|... ..+|+|||++.+ ...+.+.|+..|+... ...+..||+|+|...
T Consensus 101 ~A~~~-g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVRE-GFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHc-CCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22222 349999999965 3456667777776421 123678999999763
Q ss_pred -CCChhhhCCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 796 -KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 796 -~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
.+++++++ || ..++++.|+.++..+|++.++
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46889999 98 588999999999999998875
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-11 Score=145.42 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=137.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE---ec-----
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV---NG----- 362 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i---~~----- 362 (957)
++..|++|.|.+.+++.|+..+... +.+..+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 4567899999999999999886432 2345689999999999999999998875421100 00
Q ss_pred -----ccccccc--cchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 363 -----PEVVSQN--YGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 363 -----~~l~~~~--~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
.+++... .......++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+.. ...
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP--P~~ 148 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP--PKH 148 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC--CCc
Confidence 0110000 00123446777766543 3357999999998842 3456788888873 457
Q ss_pred eEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 432 VLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 432 v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
+++|++|+.++.|.+.+++ |+. .++|..++.++..++++..+.+.+..+++..++.++..+.|- .+++..++..+
T Consensus 149 tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs-lR~AlslLekl 223 (725)
T PRK07133 149 VIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS-LRDALSIAEQV 223 (725)
T ss_pred eEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 8888899999999999998 774 589999999999999999888878887888899999888763 34555554443
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=140.56 Aligned_cols=184 Identities=20% Similarity=0.279 Sum_probs=132.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|++|.|.+..++.|+..+... ..+..+|||||||+|||++|+++|+.+..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 3467899999999999988886432 23456899999999999999999987743
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
.++.+++.+.. | -..++.+.+.+ ......|++|||+|.+.. ...+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~----g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHR----G--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeeccccC----C--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHHHH
Confidence 23333332211 1 12233333222 224567999999998842 23567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. .+.+++|++|+.+..+.+++++ |+. .++|..++.++....+...+.+.+..+++..++.++..+.| ..+
T Consensus 144 ~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr 217 (451)
T PRK06305 144 TLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLR 217 (451)
T ss_pred HhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88874 4577888888888899999998 663 48999999999999999888888888889999999998865 333
Q ss_pred HHHHHHH
Q 002169 502 DLAALCN 508 (957)
Q Consensus 502 Di~~l~~ 508 (957)
++..+++
T Consensus 218 ~a~~~Le 224 (451)
T PRK06305 218 DAESLYD 224 (451)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=148.24 Aligned_cols=182 Identities=23% Similarity=0.307 Sum_probs=127.0
Q ss_pred cccccccCCcHHHHH---HHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~---~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
+.+++++.|.+..+. .|+.++.. ....+++|+|||||||||+|+++|+..+.+++.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 456788999998875 45555321 123479999999999999999999999999988887531
Q ss_pred ccchhHHHHHHHHHHHh-----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC--CC
Q 002169 369 NYGESEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN--RP 441 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~-----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN--~~ 441 (957)
+ ...++.+++.+. .....+|||||+|.+.. .....|+..++ .+.+++|++|+ +.
T Consensus 89 --~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE----~g~IiLI~aTTenp~ 149 (725)
T PRK13341 89 --G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVE----NGTITLIGATTENPY 149 (725)
T ss_pred --h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhc----CceEEEEEecCCChH
Confidence 1 112333333331 12457999999998842 12234555554 34577777664 33
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc-------CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS-------GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~-------~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
..+++++++ |. ..+.++.++.+++..+++..+. .....+++..++.|+....| ..+.+..+++.+.
T Consensus 150 ~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 150 FEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred hhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 568899988 53 3489999999999999998886 44567889999999998855 4555666665544
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=143.83 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=141.1
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEe-------
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN------- 361 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~------- 361 (957)
+....+|++|.|.+..++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 344568899999999999999986432 33567999999999999999999998865321111
Q ss_pred ------cc--------ccccccc--chhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 362 ------GP--------EVVSQNY--GESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 362 ------~~--------~l~~~~~--ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
|. +++.-.. .-.-..++++++.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLLK 154 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALLK 154 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHHH
Confidence 10 1110000 0113356777766542 2357999999998842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+++|++|+.++.+.+.+++ |+ ..++|..++.++...+++..+.+.+..+++..++.++..+.| ..+
T Consensus 155 tLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88774 4567888888888889999988 66 458999999999999999999888888899999999998876 456
Q ss_pred HHHHHHHHH
Q 002169 502 DLAALCNEA 510 (957)
Q Consensus 502 Di~~l~~~A 510 (957)
++.+++..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-11 Score=140.75 Aligned_cols=187 Identities=22% Similarity=0.302 Sum_probs=134.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
.+..|+++.|.+..++.|+..+... ..+..+|||||+|+||||+|+++|..+.+.
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 3457889999999999998886332 224457899999999999999999987531
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++.+++.+ ...-..++.+.+.+. .....|++|||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHH
Confidence 12222211 011223455554443 23457999999998842 234667888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
++.. ...+++|++|+.++.+.+++++ |+. .+.|..++.++...++..++...+..+++..++.++..+.| ..++
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~ 216 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRD 216 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8763 4467788888888889999888 664 58999999999999999999888888888999999988775 3455
Q ss_pred HHHHHHHHH
Q 002169 503 LAALCNEAA 511 (957)
Q Consensus 503 i~~l~~~A~ 511 (957)
+.++++.+.
T Consensus 217 al~~Ldkl~ 225 (486)
T PRK14953 217 AASLLDQAS 225 (486)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-12 Score=144.11 Aligned_cols=194 Identities=25% Similarity=0.365 Sum_probs=136.6
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCC---
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE--- 715 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~--- 715 (957)
.....+|+|++.+..++.+.++.. ......|||.|++||||..+||+|...+ +.|||.+||+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 456778999999999999888653 3456779999999999999999998876 57999999964
Q ss_pred ------cccccccchHHHH---HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc------
Q 002169 716 ------LFSKWVGESEKAV---RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 780 (957)
Q Consensus 716 ------l~~~~vg~~~~~i---r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------ 780 (957)
+++...|.+..++ +.-|+.|.++ .||+|||..| ...++..||..|+.-+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-------------CHHHHHHHHHHHhhcceeecCC
Confidence 4555455544444 5678888887 9999999855 4566677887776431
Q ss_pred ---cCCcEEEEEecCCCCCCChhhhCCCCcceecc-------cCCCCHHHHH--------HHHHHHHhcCCCCC-cccHH
Q 002169 781 ---QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY-------VGPPNETDRE--------EIFRIHLRKIPCSS-DVNIR 841 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~-------~~~P~~~er~--------~Il~~~l~~~~~~~-~~~l~ 841 (957)
...+|.||+|||+.-. ...+.|+|..-+| +..|...+|. .+++.+.++++... ...-+
T Consensus 352 ~r~ikVDVRiIAATNRDL~---~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNRDLE---EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccchhHH---HHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 1347999999997643 4455688876444 3456665553 34455555566532 22223
Q ss_pred H---HHHHc-cCCcHHHHHHHHHHHHHHH
Q 002169 842 E---LACLS-EGCTGADISLICREAAISA 866 (957)
Q Consensus 842 ~---la~~t-~g~sg~dl~~l~~eA~~~a 866 (957)
. |.... .| +.|++++++++|+..|
T Consensus 429 Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 3 32222 23 5799999999999988
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-11 Score=126.97 Aligned_cols=183 Identities=20% Similarity=0.232 Sum_probs=122.7
Q ss_pred ccccccC--CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc
Q 002169 293 QDISKLG--GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 367 (957)
Q Consensus 293 ~~~~~i~--Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~ 367 (957)
.++++.. +....+..++++.. +.....+++|+||+|||||+||++++++. +..++.+++.++..
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 3455532 34555555555532 23456789999999999999999999875 66778888766532
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC---Cc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---~l 444 (957)
. +. ......+|+|||+|.+... ....|+..++.....+..++|++++.+. .+
T Consensus 84 ~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 84 A------------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred H------------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 1 11 1223569999999987321 1234666666554444544555554322 34
Q ss_pred hhhhhCCCCc--ceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 445 EPALRRPGRL--DREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 445 d~al~r~gRf--d~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+.+++ || ...++++.|+.+++..+++......+..+++..++.|+....| +.+++..+++.-...+
T Consensus 139 ~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 139 REDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 466666 65 4578999999999999999888888888899999999995444 5677777776643333
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=142.27 Aligned_cols=193 Identities=14% Similarity=0.220 Sum_probs=126.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
..+++||||+|+|||+|++++++++ +..++.++..++...+.......-...|.... ..+.+|+|||++.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 4569999999999999999999876 56777777765544322211111112233322 345699999999874321
Q ss_pred CCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-CC---CCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHh
Q 002169 757 KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-PD---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLR 830 (957)
Q Consensus 757 ~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-~~---~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~ 830 (957)
.....++..++.+...+. .+|++|+. |. .+++.|.+ ||. ..+.+.+|+.++|..|++..+.
T Consensus 219 ----------~~qeelf~l~N~l~~~~k-~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 ----------ATQEEFFHTFNSLHTEGK-LIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred ----------hhHHHHHHHHHHHHHCCC-cEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 112234444443332333 45555554 43 46789998 885 6888999999999999999998
Q ss_pred cCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 831 KIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 831 ~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
..++.-+ ..++.++....+ +.+++..+++..+.......+....|+.+..+++++..
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7765433 335557777765 78888888887764333333345678999999888865
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-11 Score=136.02 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=132.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE------------E
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL------------F 358 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~------------i 358 (957)
.+.+|+++.|.+..++.++..+... ..+.++|||||||+|||++|+++|+.+.... +
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 3457889999999999888886432 2356899999999999999999999875421 2
Q ss_pred EEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 359 TVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 359 ~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
.+++.. ......++.+++.+.. ..+.|++|||+|.+.. ...+.|+..++.. ....++
T Consensus 81 ~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~~~~~ 141 (367)
T PRK14970 81 ELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PAHAIF 141 (367)
T ss_pred Eecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CCceEE
Confidence 222111 1123456677766542 2357999999987742 2345677777652 345677
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
|++++....+.+++++ |+. .+++..|+.++...++...+.+.+..+++..++.++..+.| ..+.+...++.
T Consensus 142 Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred EEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 7778888888899988 553 48999999999999999988888888899999999998765 44444444443
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=136.38 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=132.3
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-------CC--cEEEEe
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GL--NFLAVK 712 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-------~~--~~i~v~ 712 (957)
...|++|+|++++++.+.-+... ....|+||+||||||||++||++|+.+ +. .+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987654321 112579999999999999999999987 22 222111
Q ss_pred CC-Cc--------cc---------------ccccc--hHHH--------HHHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 713 GP-EL--------FS---------------KWVGE--SEKA--------VRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 713 ~~-~l--------~~---------------~~vg~--~~~~--------ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
+. ++ .. ..+|. .++. ....+.+|..+ +||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~G---iL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRG---YLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCC---eEEecChHhC-------
Confidence 10 00 00 01110 0000 01222233333 9999999965
Q ss_pred CCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCCH-HHHHHHH
Q 002169 759 SDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPNE-TDREEIF 825 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~~-~er~~Il 825 (957)
...+++.|+..|+... ....+++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|+
T Consensus 141 ------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il 212 (334)
T PRK13407 141 ------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVI 212 (334)
T ss_pred ------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 4567778888886432 124678888888655 58999999 9999999988877 7899999
Q ss_pred HHHHhcCC----C------C--------------------CcccHH---HHHHHcc--CCcHHHHHHHHHHHHHHHHHHh
Q 002169 826 RIHLRKIP----C------S--------------------SDVNIR---ELACLSE--GCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 826 ~~~l~~~~----~------~--------------------~~~~l~---~la~~t~--g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+.....-. + . .+.... +++..+. | .-+++. +++.|...|..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~G 290 (334)
T PRK13407 213 RRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEG 290 (334)
T ss_pred HHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcC
Confidence 87532100 0 0 000111 1222222 2 234444 7777777777665
Q ss_pred cCCCCCCHHHHHHHHHhhCC
Q 002169 871 LDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 871 ~~~~~It~~d~~~al~~~~p 890 (957)
...|+.+|++.+..-+..
T Consensus 291 --r~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 291 --AEAVGRSHLRSVATMALS 308 (334)
T ss_pred --CCeeCHHHHHHHHHHhhh
Confidence 678999999877654443
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-11 Score=125.16 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=138.3
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCC
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 714 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~ 714 (957)
.....+.+++++|.+..|+.|.+.....+ .-.+..++||+|+.|||||+++|++..+. |..+|.|...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 34567899999999999999987765432 23477889999999999999999999876 6778888766
Q ss_pred CcccccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc--ccCCcEEEEEec
Q 002169 715 ELFSKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--HQRVNVTVIAAT 791 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~--~~~~~v~VI~aT 791 (957)
++. .+..+++..+. ..+-|||+|++. + ...+.-...|-..|+|- ....+|+|.+|+
T Consensus 90 ~L~---------~l~~l~~~l~~~~~kFIlf~DDLs-F-----------e~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 90 DLG---------DLPELLDLLRDRPYKFILFCDDLS-F-----------EEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred Hhc---------cHHHHHHHHhcCCCCEEEEecCCC-C-----------CCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 653 34455555553 235699999864 1 12233345677777765 235589999999
Q ss_pred CCCCCCChhhhC---------------------CCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHH----HHHH
Q 002169 792 NRPDKIDPALLR---------------------PGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIR----ELAC 845 (957)
Q Consensus 792 N~~~~id~aLlr---------------------~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~----~la~ 845 (957)
|+.+.+.+.+.. ..||.-.|.|.+|+.++-.+|++.++.+.++.-+ ..+. ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 987665332111 1299999999999999999999999998887654 2222 2344
Q ss_pred HccCCcHHHHHHHHHH
Q 002169 846 LSEGCTGADISLICRE 861 (957)
Q Consensus 846 ~t~g~sg~dl~~l~~e 861 (957)
.-.|.|||-....++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 4557788877776653
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=146.96 Aligned_cols=261 Identities=20% Similarity=0.270 Sum_probs=160.0
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK 719 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~ 719 (957)
..|++++|.....+.+.+.+... .....+|||+|++||||+++|++|...+ +.||+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 56889999999988888877531 2345679999999999999999998765 579999999765322
Q ss_pred c-----cc----chH----HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc------
Q 002169 720 W-----VG----ESE----KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 780 (957)
Q Consensus 720 ~-----vg----~~~----~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------ 780 (957)
. .| .+. .....+|+.|..+ .||||||+.| ...++..|+..|+...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCC
Confidence 1 11 111 1123567777665 9999999976 4556667887776421
Q ss_pred ---cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHHhcC----CCCCcc-cHH
Q 002169 781 ---QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRKI----PCSSDV-NIR 841 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l~~~----~~~~~~-~l~ 841 (957)
...++.+|++||..-. .+...|+|.. .+.+..|...+|. .+++.++.++ ...-.. .+.
T Consensus 342 ~~~~~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 418 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQ 418 (526)
T ss_pred CceeeecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1235689999986632 2333445543 3445566666554 3444444432 221111 111
Q ss_pred H-------HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC---C-C--chHHHHHHHHHHHHHhc
Q 002169 842 E-------LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ---P-S--EIHSYKELSAKFQRLVH 908 (957)
Q Consensus 842 ~-------la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~---p-~--~~~~y~~~~~~~~~~v~ 908 (957)
. |.....--+.+++++++++++..+... +...|+.+++........ + . ........ +.+++.++
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~--~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~Er~~I 495 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAM--PAGALTPDVLRALAPELAEASGKGKTSALSLRER-SRVEALAV 495 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccC--CCCccCHHHhhhhchhhcccccccccCccchHHH-HHHHHHHH
Confidence 1 333322225799999999988764211 134577777653332210 0 0 00012222 45677777
Q ss_pred Cchhhhhcccccccchhhh---hhhhhccCC
Q 002169 909 SNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
........++....++..| .+||.++|.
T Consensus 496 ~~aL~~~~Gn~~~aA~~LGIsRtTL~Rklk~ 526 (526)
T TIGR02329 496 RAALERFGGDRDAAAKALGISRTTLWRRLKA 526 (526)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 7777777777777777776 889999874
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-11 Score=139.98 Aligned_cols=188 Identities=19% Similarity=0.238 Sum_probs=139.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|+++.|.+.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3467899999999999999886322 23455799999999999999999988732
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++.+- -.-..++.+.+.+.. ....|++|||+|.+. ....+.|+..
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 1233332210 012345565554321 224699999998884 3445678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+.+|++|+.+..+.+++++ |. ..++|..++.++..+.+...+...+..+++..++.++..+.| ..++
T Consensus 141 LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~ 214 (535)
T PRK08451 141 LEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRD 214 (535)
T ss_pred Hhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 8875 4567788888888999999999 74 468999999999999999888888888889999999998876 6677
Q ss_pred HHHHHHHHHH
Q 002169 503 LAALCNEAAL 512 (957)
Q Consensus 503 i~~l~~~A~~ 512 (957)
+..++..+..
T Consensus 215 alnlLdqai~ 224 (535)
T PRK08451 215 TLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHH
Confidence 7777766543
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=143.01 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=135.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 356 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--------------- 356 (957)
...|+++.|.+..++.|+.++... +....+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 457889999999999998886432 124579999999999999999999988652
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++.++. .....-..++++++.+.. ....|+||||+|.|. ....+.|+.
T Consensus 81 C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK 143 (620)
T PRK14948 81 CRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLK 143 (620)
T ss_pred HHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHH
Confidence 122221 112334567777776542 234699999999883 234567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+. ....+++|++|+.++.+.+.+++ |+ ..++|..++.++....+.+.+.+.+..+++..+..++..+.|-- +
T Consensus 144 ~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r 217 (620)
T PRK14948 144 TLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-R 217 (620)
T ss_pred HHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-H
Confidence 8886 34568888888888889999988 66 34889999999988888888888777788888999999887743 4
Q ss_pred HHHHHHH
Q 002169 502 DLAALCN 508 (957)
Q Consensus 502 Di~~l~~ 508 (957)
++..+++
T Consensus 218 ~A~~lLe 224 (620)
T PRK14948 218 DAESLLD 224 (620)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-11 Score=125.54 Aligned_cols=164 Identities=13% Similarity=0.202 Sum_probs=110.8
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
..++||||||||||+|++++++..+..++. .... ....+ ....+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 669999999999999999999988754432 1000 00111 123599999999541
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC--CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK--IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS- 835 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~--id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~- 835 (957)
.. .+...++.+.+.+..++|+++..|.. + ++|++ |+. .++.+.+|+.+++..+++..+...++.
T Consensus 99 -----~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l 167 (214)
T PRK06620 99 -----EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTI 167 (214)
T ss_pred -----HH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11 23333333334556677777766654 5 78888 874 268899999999999999888765543
Q ss_pred CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 836 SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 836 ~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.+..++.++....| +.+.+.++++.....+... ...||...+++++
T Consensus 168 ~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~~~~~l 213 (214)
T PRK06620 168 SRQIIDFLLVNLPR-EYSKIIEILENINYFALIS---KRKITISLVKEVL 213 (214)
T ss_pred CHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHh
Confidence 34457778888886 7888888888644333322 3568888887765
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=125.15 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=103.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
...++|+||+|||||+|+++++..+ +....+++..++ ...+...++... ...+|+|||++.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCChH
Confidence 4569999999999999999998664 555566654332 223334454443 346999999998854321
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCCc---hhhhhCCCCc--ceeeeecCCCHHHHHHHHHHHHcCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSI---EPALRRPGRL--DREIEIAVPSPAQRLEILHALLSGM 479 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~l---d~al~r~gRf--d~~I~i~~P~~~~r~~Il~~~l~~~ 479 (957)
....++.+++..... +..+|+|+| .|..+ ++++++ || ...+.++.|+.+++.+|++.++...
T Consensus 111 ---------~~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 ---------DEVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred ---------HHHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 123455566555333 334555554 56654 688888 75 4468999999999999999988777
Q ss_pred CCCCChHHHHHHHHHcCC
Q 002169 480 EHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 480 ~~~l~~~~l~~La~~t~g 497 (957)
+..++++.++.|+.+..|
T Consensus 179 ~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCCHHHHHHHHHhCCC
Confidence 888899999999999775
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=140.41 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=113.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
..+++||||+|+|||+|++++++++ +..++++++.++...........-...|.... ..+++|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 4679999999999999999999876 67788888876655432222111112233322 346799999999885432
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC---CchhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SIEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---~ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
.....|+..++.+...+..+|+.+...|. .+++.+++ ||. ..+.+..|+.++|..|++..+...+
T Consensus 219 --------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 --------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred --------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 12234555555443334444444444444 46688888 885 5788999999999999999999888
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
..++++.++.++....+- .+.+...+.
T Consensus 289 ~~l~~evl~~la~~~~~d-ir~L~g~l~ 315 (445)
T PRK12422 289 IRIEETALDFLIEALSSN-VKSLLHALT 315 (445)
T ss_pred CCCCHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 889999999999987653 334444333
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=136.52 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=130.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
.+..|++|.|.+.+++.|+..+... +.+..+||+|||||||||+|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 4567889999999999888876422 235569999999999999999999988652
Q ss_pred ------------------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 357 ------------------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 357 ------------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
++.+++.+. ..-..++.+.+.+. .....|+||||+|.+.. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----------~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----------A 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------H
Confidence 112221110 11234555555442 12346999999998842 2
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 494 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~ 494 (957)
..+.|+..++.. ...+++|++|+.+..+.+++++ |.. .++|..++.++..+.++..+...+..+++..++.++..
T Consensus 143 ~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 334577777753 3467777788778888888887 653 48899999999999999888887888899999999998
Q ss_pred cCCCcHHHHHHHHHH
Q 002169 495 THGFVGADLAALCNE 509 (957)
Q Consensus 495 t~g~~gaDi~~l~~~ 509 (957)
+.| ..+.+...++.
T Consensus 218 s~g-~lr~a~~~L~k 231 (397)
T PRK14955 218 AQG-SMRDAQSILDQ 231 (397)
T ss_pred cCC-CHHHHHHHHHH
Confidence 876 33444444443
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=145.91 Aligned_cols=259 Identities=20% Similarity=0.264 Sum_probs=153.4
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHH-----------hCCcEEEE
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE-----------AGLNFLAV 711 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~-----------~~~~~i~v 711 (957)
..|++++|.+...+.+++.+... ......|||+|++||||+++|++|... .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 45788999999988888877531 234567999999999999999999877 35799999
Q ss_pred eCCCccccc-----ccc----hH----HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc
Q 002169 712 KGPELFSKW-----VGE----SE----KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 778 (957)
Q Consensus 712 ~~~~l~~~~-----vg~----~~----~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~ 778 (957)
+|..+-... .|. +. ..-..+|+.|.++ .||||||+.| ...++..|+..|+.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-------------p~~~Q~kLl~~L~e 348 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-------------PLPLQTRLLRVLEE 348 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-------------CHHHHHHHHhhhhc
Confidence 998763321 111 11 1123467777666 9999999976 45566678887764
Q ss_pred cc---------cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHHhc----CCC
Q 002169 779 LH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRK----IPC 834 (957)
Q Consensus 779 ~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l~~----~~~ 834 (957)
.. ...++.+|++||..-. .+...|+|.. .+.+..|...+|. .+++.++++ ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~---~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLE---EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHH---HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 21 1236789999986532 3444566654 3445667776654 344444443 332
Q ss_pred CCcccH--------HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 002169 835 SSDVNI--------RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRL 906 (957)
Q Consensus 835 ~~~~~l--------~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~ 906 (957)
....+. ..|.....--+.+++++++++++..+.... ...|+.+++............. .. ...+++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~--~~~i~~~~l~~~~~~~~~~~~~-~~--~~~~Er~ 500 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEP--TPDLTPQFLQLLLPELARESAK-TP--APRLLAA 500 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCC--cCccCHHHhhhhcccccccccc-cc--hhHHHHH
Confidence 211111 122222222267999999999887542111 2346666553211111100000 00 0113444
Q ss_pred hcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 907 VHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 907 v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
.+........++....++..| .+||.++|.
T Consensus 501 ~I~~~L~~~~Gn~~~aA~~LGIsRtTL~RkLk~ 533 (538)
T PRK15424 501 TLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533 (538)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 444455555555555555665 789999875
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=124.21 Aligned_cols=118 Identities=27% Similarity=0.278 Sum_probs=87.7
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC------------CCCchhhhhCCCCcce
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 456 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~------------~~~ld~al~r~gRfd~ 456 (957)
|.||||||+|.| +-...+-|...|+. .--.++|++||+ |+-|+..|.. |+ -
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 678888887766 22333444444443 223488889997 5567777765 54 2
Q ss_pred eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 457 ~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
.|...+++.++..+|++..+....+.+++..++.|++...--+-+.-.+|+.-|...|.+|......
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~ 421 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVE 421 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeee
Confidence 3677889999999999999999999999999999999887777778788888888888887655443
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-11 Score=128.64 Aligned_cols=133 Identities=24% Similarity=0.277 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc------cccccccchhHHHH-H--------------------HH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP------EVVSQNYGESEQAL-H--------------------EV 380 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~------~l~~~~~ge~e~~i-~--------------------~v 380 (957)
.+.+++|+||||||||++|+++|..+|.+++.++|. ++++.+.+.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 467899999999999999999999999999999875 34443332211111 1 11
Q ss_pred HHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--------------cCCCeEEEEecCCCC----
Q 002169 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------------RTDGVLVIAATNRPD---- 442 (957)
Q Consensus 381 f~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--------------~~~~v~vI~ttN~~~---- 442 (957)
+..+. .+.+|+|||++.+. ..+.+.|+..|+.-. ...++.||+|+|+..
T Consensus 100 ~~A~~--~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR--EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH--cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22121 24699999998863 235566777775421 224678999999863
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l 476 (957)
.+++++.+ || ..+.++.|+.++..+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 88 458999999999999998764
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-10 Score=122.84 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=115.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~ 757 (957)
..++|+||+|||||.++++++.++ +...+.+...++ ...+...++... ...+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999997764 444455554332 223344555443 33599999999774321
Q ss_pred CCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CCCC---CChhhhCCCCc--ceecccCCCCHHHHHHHHHHHHhc
Q 002169 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK---IDPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 758 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~~~---id~aLlr~gRf--d~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
.. ...++..++..... +..+|+++| .|.. ++++|.+ || ..++.+++|+.+++.+|++.+...
T Consensus 110 ------~~---~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 ------ED---EVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred ------HH---HHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 11 12333444433223 344666665 4544 4799998 86 457889999999999999987765
Q ss_pred CCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 832 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 832 ~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
.++. ++..+..|++.+.| +.+.+.++++.....+... ...||...+++.+..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~---~~~it~~~~~~~l~~ 230 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA---KRRVTVPFLRRVLEE 230 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHhh
Confidence 4443 33456778888876 5556655576554434433 346898888877754
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=140.71 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=133.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 3567899999999999998876432 224568999999999999999999887532
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++.+++... ..-..++.+.+.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHH
Confidence 122222110 112234555443322 2356999999998842 33566888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+++|++++..+.+.+.+++ |+. .++|..++..+...+++..+...+..+++..++.++..+.| +.+
T Consensus 143 ~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr 216 (585)
T PRK14950 143 TLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMR 216 (585)
T ss_pred HHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88774 3567888888888888888887 654 48899999999999999988888888889999999988876 555
Q ss_pred HHHHHHHH
Q 002169 502 DLAALCNE 509 (957)
Q Consensus 502 Di~~l~~~ 509 (957)
++.+.++.
T Consensus 217 ~al~~Lek 224 (585)
T PRK14950 217 DAENLLQQ 224 (585)
T ss_pred HHHHHHHH
Confidence 55555543
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=140.33 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=119.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
..++|||++|||||+|++++++++ +..++++++.++...+...........|.... ..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 459999999999999999999876 56788999988876654433322222333222 236899999999886432
Q ss_pred cCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC-CC---CchhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHcC
Q 002169 405 KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-PD---SIEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~-~~---~ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
.....|+.+++.+...++. +|+++|. +. .+++.|++ ||.. .+.+..|+.+.|.+||+.++..
T Consensus 394 ---------~tqeeLF~l~N~l~e~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1224566666666544444 4446654 33 56788988 7754 5699999999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+.++++.++.|+.+..+ +.+.|..++..-
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 9999999999999998765 345555555543
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=129.74 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=130.6
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-------cEEEE-e
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAV-K 712 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-------~~i~v-~ 712 (957)
.+..+++++|++++++.+..++.. -+.+..+||+||+|+|||++|+.+|+.+.. +.... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 455789999999999999988863 244567999999999999999999998744 11000 0
Q ss_pred --------------CCCcc---ccc--------ccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCc
Q 002169 713 --------------GPELF---SKW--------VGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVS 763 (957)
Q Consensus 713 --------------~~~l~---~~~--------vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~ 763 (957)
-+++. ..+ ..-+...+|.+.+... .+...|++|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------ 153 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------ 153 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------
Confidence 01111 000 0011234455444332 345679999999977
Q ss_pred chHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHH
Q 002169 764 VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIREL 843 (957)
Q Consensus 764 ~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~l 843 (957)
.....+.||..|+.. ..+.++|++|+.++.+.|.+++ |+ ..+.+++|+.++..++++......+ .++.....+
T Consensus 154 -~~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i 226 (351)
T PRK09112 154 -NRNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEAL 226 (351)
T ss_pred -CHHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHH
Confidence 344567899999863 4467777888999999999988 88 5999999999999999987443322 123335677
Q ss_pred HHHccCCcHHHHHHHHHHHH
Q 002169 844 ACLSEGCTGADISLICREAA 863 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~ 863 (957)
++.+.| +.+...++++...
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 777887 6666666665443
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=138.63 Aligned_cols=174 Identities=13% Similarity=0.196 Sum_probs=127.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE-------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL------------- 357 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~------------- 357 (957)
+..+|++|.|.+.+++.|+..+... ..+..+||+||+||||||+|+++|+.+.+.-
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 4567899999999999988875322 2345699999999999999999999886621
Q ss_pred -------------------EEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 358 -------------------FTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 358 -------------------i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
+.+++.+. ..-..++.+.+.+. .....|++|||+|.+.. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------H
Confidence 11111110 11234555554442 23356999999998842 2
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 494 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~ 494 (957)
..+.|+..|+.. ...+++|++|+.++.+.+.+++ |. ..++|..++.++....++..+...+..+++..++.++..
T Consensus 143 a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345688888774 3457777788888899899888 54 348999999999999998888887888899999999998
Q ss_pred cCC
Q 002169 495 THG 497 (957)
Q Consensus 495 t~g 497 (957)
+.|
T Consensus 218 s~G 220 (620)
T PRK14954 218 AQG 220 (620)
T ss_pred hCC
Confidence 876
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=129.15 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=122.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
+.+++++.|.+++++.++..+... ...+++|+||||||||++++++++++. ..++.+++++-.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 356788999999999998886321 123689999999999999999999873 234555544321
Q ss_pred ccccchhHHHHHHHHHH-Hh----c-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 367 SQNYGESEQALHEVFDS-AS----Q-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~-a~----~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
+ ...++..+.. +. . ..+.+++|||+|.+.. .....|+..++... ....+|+++|.
T Consensus 81 ~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~lIl~~~~ 141 (319)
T PRK00440 81 G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYS--QNTRFILSCNY 141 (319)
T ss_pred c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCC--CCCeEEEEeCC
Confidence 1 1112222221 11 1 2356999999998842 12345677776643 34567778888
Q ss_pred CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 441 ~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
+..+.+++++ |+. .++++.++.++...+++.++.+.+..+++..++.++..+.|.
T Consensus 142 ~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 142 SSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred ccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7878788887 664 489999999999999999998888888999999999987663
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-10 Score=119.89 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=133.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~ 368 (957)
...++++.|++.+++.|.+-.... +.-.|..++||+|+.|||||++++++..+. |..+++|...++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~F--------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~- 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQF--------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD- 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH--------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc-
Confidence 456789999999999988775433 223578899999999999999999999866 67788887766532
Q ss_pred ccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccCCCeEEEEecCCCCCch
Q 002169 369 NYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~~~v~vI~ttN~~~~ld 445 (957)
+..+++..... .+-|||+|++.- . . . ..--..|..+|++- ....++++.+|+|+-+.++
T Consensus 94 --------l~~l~~~l~~~~~kFIlf~DDLsF--e-~---~----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 94 --------LPELLDLLRDRPYKFILFCDDLSF--E-E---G----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred --------HHHHHHHHhcCCCCEEEEecCCCC--C-C---C----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 33444444322 356999999641 1 1 1 11224567777764 3467899999999855444
Q ss_pred hhhhC---------------------CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHH----HHHHcCCCcH
Q 002169 446 PALRR---------------------PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEY----LSMATHGFVG 500 (957)
Q Consensus 446 ~al~r---------------------~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~----La~~t~g~~g 500 (957)
+.+.. ..||.-.|.|..|+.++-.+|++.++...++.++++.+.. .|....|.+|
T Consensus 156 E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSG 235 (249)
T PF05673_consen 156 ESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSG 235 (249)
T ss_pred hhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCH
Confidence 32111 1288889999999999999999999999888877655543 3444567777
Q ss_pred HHHHHHHH
Q 002169 501 ADLAALCN 508 (957)
Q Consensus 501 aDi~~l~~ 508 (957)
+--.+.++
T Consensus 236 RtA~QF~~ 243 (249)
T PF05673_consen 236 RTARQFID 243 (249)
T ss_pred HHHHHHHH
Confidence 76665554
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=124.76 Aligned_cols=159 Identities=21% Similarity=0.271 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 4679999999999999999998754 5677888877765421 223333322 2599999999875332
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc---hhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l---d~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
.....|+.+++.+...+..++|+++..|..+ .|.+++ ||. ..+.+..|+.+++.++++......+
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 2234577777776555666666666555433 578888 763 4578899999999999997777777
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
..++++.++.++.+..+- .+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~d-~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTRS-MSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 888999999999987753 3444444443
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=128.33 Aligned_cols=218 Identities=21% Similarity=0.316 Sum_probs=147.0
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----EEEEeCCCccccc--
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN-----FLAVKGPELFSKW-- 720 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~-----~i~v~~~~l~~~~-- 720 (957)
+.+.++..+++...+.-. +.-..|.++++|||||||||.+++.+++++... ++.|||..+-+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~---------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPA---------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHH---------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 667777777777765432 123345569999999999999999999987433 8899987653321
Q ss_pred -------------ccch-HHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcE
Q 002169 721 -------------VGES-EKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785 (957)
Q Consensus 721 -------------vg~~-~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 785 (957)
.|.+ .+....+++.... ...-|++|||+|.|....+ .++-.|+...+.. ...+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc--ceeE
Confidence 1111 2222333333332 4566999999999975432 3444454444433 4578
Q ss_pred EEEEecCCCC---CCChhhhCCCCc-ceecccCCCCHHHHHHHHHHHHhcCC---CCCcccH---HHHHHHccCCcHHHH
Q 002169 786 TVIAATNRPD---KIDPALLRPGRF-DRLLYVGPPNETDREEIFRIHLRKIP---CSSDVNI---RELACLSEGCTGADI 855 (957)
Q Consensus 786 ~VI~aTN~~~---~id~aLlr~gRf-d~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~l---~~la~~t~g~sg~dl 855 (957)
.+|+.+|..+ .+|+.+.+ +| ...|.|++++.+|...|++...+.-- ...+.-+ ..++....| +.|-.
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~a 234 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKA 234 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHH
Confidence 8999999875 57888877 54 34589999999999999998886421 1122222 233344455 67888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..+|+.|+..|-++. ...++.+|+..|...+...
T Consensus 235 idilr~A~eiAe~~~--~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 235 IDILRRAGEIAEREG--SRKVSEDHVREAQEEIERD 268 (366)
T ss_pred HHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHhhHH
Confidence 899999999998876 7789999999996555443
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-11 Score=127.44 Aligned_cols=189 Identities=25% Similarity=0.403 Sum_probs=126.6
Q ss_pred ccccccccCCcHHHHHH---HHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEeccc
Q 002169 291 VEQDISKLGGLSKEYAI---LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPE 364 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~---l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~---~i~i~~~~ 364 (957)
...++++.+|.+..+.+ |+.+|+. ..-..++|+||||||||+||+.|+.-...+ |+++++..
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQ------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHc------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 44567888888876654 3333221 123368999999999999999999877665 66665432
Q ss_pred ccccccchhHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 365 VVSQNYGESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 365 l~~~~~ge~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
.....+|.+|+.+.. ....||||||++.+....++ .|+-.+ ..+.+++|++|.
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-----------~fLP~V----E~G~I~lIGATT 258 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-----------TFLPHV----ENGDITLIGATT 258 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-----------ccccee----ccCceEEEeccc
Confidence 234568888987763 34689999999988543322 244333 356789999873
Q ss_pred --CCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc----------CCCC---CCChHHHHHHHHHcCCCcHHHHH
Q 002169 440 --RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS----------GMEH---SLLDSEVEYLSMATHGFVGADLA 504 (957)
Q Consensus 440 --~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~----------~~~~---~l~~~~l~~La~~t~g~~gaDi~ 504 (957)
+--.+..+|.+ |+ +++.+.....+....||..-.. .+++ .+.+..++.++..++|-..+.+.
T Consensus 259 ENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 259 ENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred CCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH
Confidence 44467788888 44 3377888888888888876332 1222 24567789999999987766666
Q ss_pred HHHHHHHHHHHH
Q 002169 505 ALCNEAALVCLR 516 (957)
Q Consensus 505 ~l~~~A~~~a~r 516 (957)
.|--.+.+.+.|
T Consensus 336 ~Lems~~m~~tr 347 (554)
T KOG2028|consen 336 ALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHhh
Confidence 554434444444
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=145.04 Aligned_cols=263 Identities=23% Similarity=0.287 Sum_probs=162.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW 720 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~ 720 (957)
...+++|.....+.+.+.+... ...+..|||+|++||||+++|++|.... +.+|+.++|..+-...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4678999999998888877542 2346679999999999999999998875 5799999998763321
Q ss_pred -----ccchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 721 -----VGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 721 -----vg~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
.|... ......|+.|.++ .||||||+.+ ...++..|+..++...
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCc
Confidence 11100 0112246666555 8999999976 3455667777776421
Q ss_pred -cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHH----hcCCCC-Cccc---H
Q 002169 781 -QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHL----RKIPCS-SDVN---I 840 (957)
Q Consensus 781 -~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l----~~~~~~-~~~~---l 840 (957)
...++.||++||..-. .+...|+|.. .+.+..|...+|. .+++.++ .+++.. ..+. +
T Consensus 318 ~~~~~~RiI~~t~~~l~---~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLR---EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHH---HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1237899999986532 3333444443 3445566666654 2333333 333211 1223 3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHhh--------CC--CchHHHHHHHHHHHHHhcC
Q 002169 841 RELACLSEGCTGADISLICREAAISAIEENLD-ASRITMQHLKTAIRHV--------QP--SEIHSYKELSAKFQRLVHS 909 (957)
Q Consensus 841 ~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~-~~~It~~d~~~al~~~--------~p--~~~~~y~~~~~~~~~~v~~ 909 (957)
..|.....--+.++++++++.|+..+.....+ ...|+.+|+....... .+ .....+....+.+++.++.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~ 474 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIR 474 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHHHH
Confidence 34444433336899999999999877533211 1245666654321100 00 0011233444567888888
Q ss_pred chhhhhcccccccchhhh---hhhhhccCC
Q 002169 910 NAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 910 ~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
.......++..+.++..| .+||.++|.
T Consensus 475 ~aL~~~~gn~~~aA~~LGisr~tL~rklk~ 504 (509)
T PRK05022 475 QALAQHQGNWAAAARALELDRANLHRLAKR 504 (509)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 888887888777777776 789999886
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=113.71 Aligned_cols=121 Identities=36% Similarity=0.585 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHH---HHHHHHHHhccCCeEEEEcCccccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQA---LHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~---i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
.+.+++++||||||||++++.++..+ +.+++.+++.+............ ....+.......+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 56789999999999999999999998 88899998877655432221111 1222333445568899999998762
Q ss_pred cCCcCCCchHHHHHHHHHHHHhhcccc----CCCeEEEEecCCCC--CchhhhhCCCCcceeeeec
Q 002169 402 PARKDGGEELSQRMVATLLNLMDGVCR----TDGVLVIAATNRPD--SIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 402 ~~~~~~~~~~~~~i~~~Ll~~ld~l~~----~~~v~vI~ttN~~~--~ld~al~r~gRfd~~I~i~ 461 (957)
......++..+..... ..++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1223345555555432 36789999999877 67777777 887666664
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=113.90 Aligned_cols=121 Identities=41% Similarity=0.650 Sum_probs=84.9
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHH---HHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKA---VRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~---ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
...+++++||||||||++++.+++.+ +.+++.+++.+....+....... ....+..+....+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 88899998877655433222111 1223344555678899999999762
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhcccc----CCcEEEEEecCCCC--CCChhhhCCCCcceecccC
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLHQ----RVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~~----~~~v~VI~aTN~~~--~id~aLlr~gRfd~~i~~~ 814 (957)
......++..+..... ..++.+|++||... .+++.+.+ ||+..+.++
T Consensus 98 -------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 -------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1222345555554432 35789999999887 67888887 998777765
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=138.69 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=148.6
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE--E------EEe
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL--F------TVN 361 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~--i------~i~ 361 (957)
.++..|+++.|.+.+.+.|++.+..-. -....||.||-||||||+||.+|+-+++.- . ...
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 345678999999999999999975552 234689999999999999999998886531 0 011
Q ss_pred ccccccc-cc---------chhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc
Q 002169 362 GPEVVSQ-NY---------GESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC 427 (957)
Q Consensus 362 ~~~l~~~-~~---------ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~ 427 (957)
|.++... ++ ...-..+|.+.+.+. .....|++|||+|.|. ....+.||..+++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLEE-- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLEE-- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccccc--
Confidence 1222221 00 122346777777664 3346799999999883 4556778888877
Q ss_pred cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHH
Q 002169 428 RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 507 (957)
Q Consensus 428 ~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~ 507 (957)
...+|.+|++|..++.+++.+++ |.- .+.|..-+.++....+...+.+.++...+..+..+++..+| +.+|..+++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 56789999999999999999998 653 37888999999999999999999999999999999998887 557877777
Q ss_pred HHHHH
Q 002169 508 NEAAL 512 (957)
Q Consensus 508 ~~A~~ 512 (957)
..|..
T Consensus 222 Dq~i~ 226 (515)
T COG2812 222 DQAIA 226 (515)
T ss_pred HHHHH
Confidence 77643
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=137.64 Aligned_cols=192 Identities=23% Similarity=0.350 Sum_probs=125.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
..+|+++.|.+..++.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 45678899999988877655321 235679999999999999999998765 34689999
Q ss_pred cccccc-------cccchhH----HHHHHHHHH----------HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHH
Q 002169 362 GPEVVS-------QNYGESE----QALHEVFDS----------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 420 (957)
Q Consensus 362 ~~~l~~-------~~~ge~e----~~i~~vf~~----------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll 420 (957)
|..+.. ...|... ...+..+.. .......+|||||++.+.+ .....|+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~~Ll 286 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQNKLL 286 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHHHHH
Confidence 876521 0111110 011111111 0011245999999987732 3334555
Q ss_pred HHhhccc--------------------------cCCCeEEEEec-CCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHH
Q 002169 421 NLMDGVC--------------------------RTDGVLVIAAT-NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473 (957)
Q Consensus 421 ~~ld~l~--------------------------~~~~v~vI~tt-N~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~ 473 (957)
..|+.-. ....+++|++| +.++.+++++++ ||. .+.++.++.+++.+|++
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHH
Confidence 5554310 12235666554 567889999998 886 47899999999999999
Q ss_pred HHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 474 ALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 474 ~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
..+......+++..++.++..+. .++....++..+.
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~ 399 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVY 399 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence 99888777778888888888654 3444444444443
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=136.87 Aligned_cols=191 Identities=16% Similarity=0.253 Sum_probs=130.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhc
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r 755 (957)
..++|||++|||||.|+++|++++ +..++.++..++...+...........|.+-. ..+++|+||||+.+....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 349999999999999999999876 46778888877766554332222222333322 246799999999875322
Q ss_pred CCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC----CCCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHH
Q 002169 756 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP----DKIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 756 ~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~----~~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l 829 (957)
.....|+..++.+..... .||+++|.+ ..+++.|.+ ||. .++.+..|+.+.|..||+.++
T Consensus 394 -----------~tqeeLF~l~N~l~e~gk-~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 -----------STQEEFFHTFNTLHNANK-QIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred -----------HHHHHHHHHHHHHHhcCC-CEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 112334444444433323 355566654 357889998 874 566889999999999999999
Q ss_pred hcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 830 RKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 830 ~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
...++.- +.-+..|+....+ +.++|..++.+....+... ...|+.+..++.++.+.+
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~---~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN---RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhhc
Confidence 8776653 3346777777775 7899999988776555543 356888888888876643
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-11 Score=131.15 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc--ccchhHH----------HHHHHHHHHhccCCeEEEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQ----------ALHEVFDSASQSAPAVVFI 394 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~--~~ge~e~----------~i~~vf~~a~~~~p~IL~I 394 (957)
..+++|+|.||||||||++++.+|..++.+++.|++..-+.. ..|.... .....+-.|. ..+.+|++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999987654333 2232110 0111222332 34678999
Q ss_pred cCccccccCCcCCCchHHHHHHHHHHHHhhc------------cccCCCeEEEEecCCCC------------CchhhhhC
Q 002169 395 DELDAIAPARKDGGEELSQRMVATLLNLMDG------------VCRTDGVLVIAATNRPD------------SIEPALRR 450 (957)
Q Consensus 395 DEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~------------l~~~~~v~vI~ttN~~~------------~ld~al~r 450 (957)
||+|..-+ .+...|..+|+. +..+..+.||+|+|+.+ .++++++.
T Consensus 141 DEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 99998733 233444444441 13445789999999865 35788888
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
||-..+.+++|+.++-.+|+......
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99877899999999999999876544
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-10 Score=132.03 Aligned_cols=192 Identities=12% Similarity=0.196 Sum_probs=130.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHH---HHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK---AVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~---~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
..+++|||++|||||.|++++++++ +..++.+++.++...+...... .+..+.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4569999999999999999999864 4677788887776554433221 222222222 34569999999977
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC-CC---CChhhhCCCCcc--eecccCCCCHHHHHHHH
Q 002169 752 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP-DK---IDPALLRPGRFD--RLLYVGPPNETDREEIF 825 (957)
Q Consensus 752 ~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~-~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il 825 (957)
... ......|...++.....+. .+|+++|.+ +. +++.|.+ ||. -++.+.+|+.++|.+|+
T Consensus 219 ~~k-----------~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK-----------EKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC-----------HHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 421 2233345555554433433 455666543 33 5788888 874 46778999999999999
Q ss_pred HHHHhcCCC---CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 826 RIHLRKIPC---SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 826 ~~~l~~~~~---~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+..++..++ -.+..+..++....| +.|.+..+|..+...+..... ...|+.+.++++++.+.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~-~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE-EKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC-CCCCCHHHHHHHHhhcc
Confidence 999987553 234456778888887 899999999988766554321 25689999999888753
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-10 Score=120.72 Aligned_cols=180 Identities=13% Similarity=0.193 Sum_probs=121.1
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
...++|+||+|||||.|++++++++ +...+.++..++... ...+++..... .+|+||+++.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCC--
Confidence 4568999999999999999998764 556677776665432 12233333332 49999999976322
Q ss_pred CCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhc
Q 002169 757 KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 757 ~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
.....+|+..++.....+..++|+++..|.. ..+.|.+ ||. .++.+..|+.+++.++++.....
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1122345555555545555666666655543 3788888 874 56778999999999999966655
Q ss_pred CCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 832 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 832 ~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.++. ++..++.+++...+ +.+.+..+++..-..+... ...||..-+++++.
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~~~~L~ 233 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA---QRKLTIPFLKETLG 233 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc---CCcCCHHHHHHHhc
Confidence 5443 34456778888886 8888888888665444332 35688877777663
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=132.37 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|+.||+.+.+ ...+..+.++.|..+..+.+..+|++||+...+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaL------------Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV 493 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSAL------------DVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV 493 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCcccc------------CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 778999999999999999998654 344556677777777677789999999987643
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-11 Score=148.25 Aligned_cols=261 Identities=20% Similarity=0.274 Sum_probs=160.1
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 718 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~ 718 (957)
...|++++|.+...+.+.+.+... ......|+|+|++||||+++|++|...+ +.+|+.++|..+-.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 456899999988887777666431 2345569999999999999999998875 46999999976632
Q ss_pred -----ccccc----hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--c------
Q 002169 719 -----KWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q------ 781 (957)
Q Consensus 719 -----~~vg~----~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~------ 781 (957)
.+.|. ........|+.|..+ +||||||+.+ ...++..|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~~G---tL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAHGG---TLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECCCC---EEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 12221 111111234444444 9999999976 4556667777776421 0
Q ss_pred -CCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHHhc----CCCCCcc---cHHH
Q 002169 782 -RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRK----IPCSSDV---NIRE 842 (957)
Q Consensus 782 -~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l~~----~~~~~~~---~l~~ 842 (957)
..++.||++||..- ..+...|+|.. .+.+..|...+|. .+++.++.+ .+....+ .+..
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 12678999998653 23444456643 3345566666663 344444432 2211122 2344
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chHHH--HHHHHHHHHHhcCchhhhhcc
Q 002169 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSY--KELSAKFQRLVHSNAEADESG 917 (957)
Q Consensus 843 la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~---~~~~y--~~~~~~~~~~v~~~~~~~~~~ 917 (957)
|....---+.++|+++++.|+..+ +...|+.+|+...+..-.+. ..... ....+.+++..+........+
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~-----~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~g 605 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS-----DNGRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGG 605 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC-----CCCeecHHHCchhhhcccccccccccccccchhHHHHHHHHHHHHHHHhCC
Confidence 444442236899999999887653 24468888887665331110 00000 011234667777777777777
Q ss_pred cccccchhhh---hhhhhccCCc
Q 002169 918 YQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 918 ~~~~~~~~~g---~~L~~~~k~~ 937 (957)
++.+.++..| .+||.++|..
T Consensus 606 n~~~aA~~LGisR~TLyrklk~~ 628 (638)
T PRK11388 606 RIQEMAALLGIGRTTLWRKMKQH 628 (638)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777777776 8899999863
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=128.91 Aligned_cols=218 Identities=22% Similarity=0.240 Sum_probs=131.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-------CcEEEEe-
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-------LNFLAVK- 712 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v~- 712 (957)
+...|++|+||+++|..|.-.+..| ...|+||.||+|||||++||+++..+. .+|....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4557899999999999987776432 235799999999999999999987652 2332000
Q ss_pred CCCc-----cc---------------cc----ccchHHHH------------------HHHHHHHHhCCCeEEEEeCCch
Q 002169 713 GPEL-----FS---------------KW----VGESEKAV------------------RSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 713 ~~~l-----~~---------------~~----vg~~~~~i------------------r~~f~~A~~~~p~ILfiDEid~ 750 (957)
.++. .+ .+ .|.++..+ ..++.+|..+ +||+||++.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~G---iL~lDEInr 155 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG---ILYVDEVNL 155 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCC---EEEecChHh
Confidence 0000 00 00 01111111 1223333333 999999997
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCC-
Q 002169 751 LAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPN- 817 (957)
Q Consensus 751 l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~- 817 (957)
+ ...+++.|+..|+... ...++++|++.|..+ .+.++++. ||...+.+..|.
T Consensus 156 L-------------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 156 L-------------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred C-------------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 6 4556677888775411 123567777777555 58999999 999999999887
Q ss_pred HHHHHHHHHHHHhcC--CCC--------Cccc--------------------HH---HHHHHccCCcHHHHHHHHHHHHH
Q 002169 818 ETDREEIFRIHLRKI--PCS--------SDVN--------------------IR---ELACLSEGCTGADISLICREAAI 864 (957)
Q Consensus 818 ~~er~~Il~~~l~~~--~~~--------~~~~--------------------l~---~la~~t~g~sg~dl~~l~~eA~~ 864 (957)
.+++.+|++...... +.. .... .. .++..+.--+.|--..+++-|..
T Consensus 221 ~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 221 PELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred hHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 588999998753210 000 0001 11 12222222234444445555554
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 865 SAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 865 ~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.|..+. ...|+.+|+..+..-+.++
T Consensus 301 ~Aal~G--R~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 301 LAAFEG--RTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHcC--CCCCCHHHHHHHHHHHHHH
Confidence 554443 6789999999887765544
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=128.95 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=128.2
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-------------
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 707 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~------------- 707 (957)
.+.++++|+|++.+++.+.+++.. -+.+..+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 456889999999999999988763 2456679999999999999999999876221
Q ss_pred ---------------------EEEEeCC--Cccccc-ccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCC
Q 002169 708 ---------------------FLAVKGP--ELFSKW-VGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKES 759 (957)
Q Consensus 708 ---------------------~i~v~~~--~l~~~~-vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~ 759 (957)
++.+... +-..+. ..-....+|.+.+.+. ...+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 1111110 000000 0012344566665543 356789999999966
Q ss_pred CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCccc
Q 002169 760 DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN 839 (957)
Q Consensus 760 ~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~ 839 (957)
.....+.||..++.. ..++++|++|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+..
T Consensus 154 -----~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 154 -----NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred -----CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 456677899999853 4577888999999999999888 87 58899999999998888775421 11222
Q ss_pred HHHHHHHccCCcHHHHHHHHH
Q 002169 840 IRELACLSEGCTGADISLICR 860 (957)
Q Consensus 840 l~~la~~t~g~sg~dl~~l~~ 860 (957)
+..++..+.| +.+....+++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHhc
Confidence 3567777877 5555555544
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-10 Score=125.21 Aligned_cols=122 Identities=23% Similarity=0.317 Sum_probs=80.3
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC----CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP----ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~----~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||++|+++|..++.+|+.++.- ++.+ ++.....-...-|-+|.. ...+|||||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~-- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASI-- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCC--
Confidence 356799999999999999999999999999998842 1111 111111101112223322 24599999999653
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhc---------cccCCcEEEEEecCCC-----------CCCChhhhCCCCcceecccC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDG---------LHQRVNVTVIAATNRP-----------DKIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~---------~~~~~~v~VI~aTN~~-----------~~id~aLlr~gRfd~~i~~~ 814 (957)
..++..|...++. .....++.+|+|+|.+ ..+++|++. ||- .|+++
T Consensus 194 -----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 194 -----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred -----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 2333344444431 1224578999999973 457999999 994 78999
Q ss_pred CCCH
Q 002169 815 PPNE 818 (957)
Q Consensus 815 ~P~~ 818 (957)
.|+.
T Consensus 260 yp~~ 263 (383)
T PHA02244 260 YDEK 263 (383)
T ss_pred CCcH
Confidence 9884
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=130.08 Aligned_cols=254 Identities=17% Similarity=0.201 Sum_probs=149.4
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc---
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV--- 721 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v--- 721 (957)
++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.|+|..+-....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 356666666665555431 2345679999999999999999998765 46999999986532211
Q ss_pred --cch-------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 722 --GES-------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 722 --g~~-------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
|.. .......|+.|..+ +||||||+.+ ...++..|+..|+... ...
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gG---tL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGG---TLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HhccccccccCcccccCCchhhCCCC---EEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceecc
Confidence 110 01112346666555 9999999976 4556667777776432 124
Q ss_pred cEEEEEecCCCC-------CCChhhhCCCCcceecccCCCCHHHHH----HHHHHHH----hcCCCC--Cccc---HHHH
Q 002169 784 NVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDRE----EIFRIHL----RKIPCS--SDVN---IREL 843 (957)
Q Consensus 784 ~v~VI~aTN~~~-------~id~aLlr~gRfd~~i~~~~P~~~er~----~Il~~~l----~~~~~~--~~~~---l~~l 843 (957)
++.+|++||..- .+.+.|.. ||. .+.+..|...+|. .+++.++ .+++.. ..+. +..|
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 689999998542 23344554 553 3445556655553 3444433 333322 1233 3344
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-----------HHHHhhC-----------C-----CchHHH
Q 002169 844 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK-----------TAIRHVQ-----------P-----SEIHSY 896 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~-----------~al~~~~-----------p-----~~~~~y 896 (957)
.....--+.+++++++++++..+-. ..++.+++. ....... + .....+
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYRHGL-----EEAPIDEIIIDPFASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDL 285 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHhCCC-----CccchhhccccccccccccccccccccccccccccccccccccccccccH
Confidence 4444222689999999988876521 112222210 0000000 0 000123
Q ss_pred HHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 897 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
....+.+++.++........++....++..| .+||.++|.
T Consensus 286 ~~~l~~~E~~~I~~aL~~~~gn~~~aA~~LGisr~tL~rklkk 328 (329)
T TIGR02974 286 KQAQQDYEIELLQQALAEAQFNQRKAAELLGLTYHQLRGLLRK 328 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4444568888888888888888888888776 789999875
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=127.12 Aligned_cols=215 Identities=22% Similarity=0.253 Sum_probs=132.6
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-------CCcEE-------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GLNFL------- 709 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-------~~~~i------- 709 (957)
-|..|+|++++|..+.-.+..| ...+++|.|+||+||||+++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3678999999998876554321 24569999999999999999999776 22221
Q ss_pred ------EE--eC-------------CCccc-----ccccch--HHH--------HHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 710 ------AV--KG-------------PELFS-----KWVGES--EKA--------VRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 710 ------~v--~~-------------~~l~~-----~~vg~~--~~~--------ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
+. .. .++-. ...|.. ++. ...++.+|..+ +||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~G---vL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRG---ILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCC---EEEecChHhC--
Confidence 00 00 01100 122211 011 12334444444 9999999976
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCCH-HH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPNE-TD 820 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~~-~e 820 (957)
...+++.|+..|+.-. ...++++|+++|..+ .+.++++. ||...+.++.|.. ++
T Consensus 144 -----------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 144 -----------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 3566777888775421 123567777777554 58999999 9998999988876 78
Q ss_pred HHHHHHHHHhcC--C------C----------------------CCcccH---HHHHHHccCCcHHHHHHHHHHHHHHHH
Q 002169 821 REEIFRIHLRKI--P------C----------------------SSDVNI---RELACLSEGCTGADISLICREAAISAI 867 (957)
Q Consensus 821 r~~Il~~~l~~~--~------~----------------------~~~~~l---~~la~~t~g~sg~dl~~l~~eA~~~a~ 867 (957)
|.+|++...... + + ..+... .+++..+..-+.|--..+++-|...|.
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 888888743210 0 0 001111 222333332234555666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 868 EENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 868 ~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.+. ...|+.+|+..+..-+.++
T Consensus 291 l~G--R~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 291 FEG--RTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HcC--CCCCCHHHHHHHHHHHHHH
Confidence 554 6789999999888766544
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-10 Score=126.30 Aligned_cols=169 Identities=12% Similarity=0.251 Sum_probs=121.4
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--------cEEEEeCCC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--------NFLAVKGPE 715 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--------~~i~v~~~~ 715 (957)
+|++|+|++.+++.+...+.. -+.+..+||+||+|+|||++|+++|+.+.. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999999999888752 345567899999999999999999997632 233332210
Q ss_pred cccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 716 LFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
+. .-....+|.+.+.+.. +...|++|||+|.+ .....+.||..|+. +..++++|.+|
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 11 1133457777765432 34569999999866 34567789999995 45578888888
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
+.++.+-+.+++ |+ ..++|+.|+.++....++..... . .+.....++..+.|
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 889999999998 77 58999999999888777665432 1 22335566666666
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=128.33 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=98.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc--cccchHH------H----HHHHHHHHHhCCCeEEEEe
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK--WVGESEK------A----VRSLFAKARANAPSIIFFD 746 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~--~vg~~~~------~----ir~~f~~A~~~~p~ILfiD 746 (957)
..++++|.||||||||++|+.+|..++.++++|++...+.. ++|.... . ....+..|.. .+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 45789999999999999999999999999999987655443 3332110 0 1234455543 35789999
Q ss_pred CCchhhhhcCCCCCCCcchHHHHHHHHHHHhc------------cccCCcEEEEEecCCCC------------CCChhhh
Q 002169 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDG------------LHQRVNVTVIAATNRPD------------KIDPALL 802 (957)
Q Consensus 747 Eid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~------------~~~~~~v~VI~aTN~~~------------~id~aLl 802 (957)
|++.. ...+++.|...|+. +....+..||+|+|..+ .+++|++
T Consensus 142 Ein~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 142 EYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred hhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 99965 23344444444442 11234688999999765 3689999
Q ss_pred CCCCcceecccCCCCHHHHHHHHHHHHhc
Q 002169 803 RPGRFDRLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 803 r~gRfd~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
. ||-.++.++.|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 9 99777889999999999998876543
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=132.98 Aligned_cols=171 Identities=11% Similarity=0.209 Sum_probs=118.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH---HHHHHHHHHhccCCeEEEEcCcccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ---ALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~---~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
..+++|||++|||||+|++++++++ +..++++++.++...+...... .+....+.. ...++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4579999999999999999999865 4677889988877665433222 122222222 24679999999988
Q ss_pred ccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHH
Q 002169 401 APARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~ 474 (957)
..+. .....|..+++.+...++ .+|++++ .|.. +++.+++ ||. -.+.+..|+.++|.+|++.
T Consensus 219 ~~k~---------~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYKE---------KTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCCH---------HHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHH
Confidence 5322 233456666666544444 4455555 4443 4577877 775 3578999999999999999
Q ss_pred HHcCCCC--CCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 475 LLSGMEH--SLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 475 ~l~~~~~--~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+...+. .++++.++.++....| ..+.+..++......+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 9877553 6789999999998876 5566777776655433
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=129.17 Aligned_cols=259 Identities=17% Similarity=0.208 Sum_probs=154.3
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc-
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK- 719 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~- 719 (957)
.+++++|.+...+.+.+.+... ......|+|+|++||||+++|++|.... +.+|+.++|..+-..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 3567889888888887776532 2345679999999999999999998765 469999999876321
Q ss_pred ----cccchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--c-----
Q 002169 720 ----WVGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q----- 781 (957)
Q Consensus 720 ----~vg~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~----- 781 (957)
+.|... ......|+.|..+ +|||||++.+ ...++..|+..++... .
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gG---tL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGG---TLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCC---eEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 111110 0112345555544 9999999976 3455667777776421 1
Q ss_pred --CCcEEEEEecCCC-------CCCChhhhCCCCcceecccCCCCHHHHH----HHHHHHH----hcCCCC--Cccc---
Q 002169 782 --RVNVTVIAATNRP-------DKIDPALLRPGRFDRLLYVGPPNETDRE----EIFRIHL----RKIPCS--SDVN--- 839 (957)
Q Consensus 782 --~~~v~VI~aTN~~-------~~id~aLlr~gRfd~~i~~~~P~~~er~----~Il~~~l----~~~~~~--~~~~--- 839 (957)
..++.||++|+.. ..+.+.|.. ||. .+.+..|...+|. .+++.++ ++++.. ..+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 1358899998764 234455555 553 3344555555553 3444443 333322 1233
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH-----HHHH--H--hhC-----CCchHHHHHHHHHHHH
Q 002169 840 IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHL-----KTAI--R--HVQ-----PSEIHSYKELSAKFQR 905 (957)
Q Consensus 840 l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~-----~~al--~--~~~-----p~~~~~y~~~~~~~~~ 905 (957)
+..|.....--+.++|++++++|+..+... .++.+++ .... . ... +.....+..+.+.+++
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Er 288 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYRHGTS-----EYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDLREWQHQQEK 288 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCC-----CCchhhcccccccccccccccccccccccccccccHHHHHHHHHH
Confidence 333333333236799999999988754221 1222221 0000 0 000 1100124444466888
Q ss_pred HhcCchhhhhcccccccchhhh---hhhhhccCCc
Q 002169 906 LVHSNAEADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 906 ~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
.++........++..+.++..| .+||.++|..
T Consensus 289 ~~I~~aL~~~~gn~~~aA~~LGIsR~tLyrklk~~ 323 (326)
T PRK11608 289 ELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKH 323 (326)
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHc
Confidence 8888778877778877777776 7899998863
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.7e-10 Score=132.86 Aligned_cols=185 Identities=17% Similarity=0.243 Sum_probs=135.5
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
...+|++|.|.+..++.|...+... ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 3467899999999999998886422 23456899999999999999999998753
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+++.+++.+- .....++.+.+.+.. ....|++|||+|.+.. ...+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHHHH
Confidence 2233333211 113346666655532 2346999999998832 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+++|++|+....+.+.+++ |. ..++|..++.++....++..+...+..+++..++.++..+.| ..+
T Consensus 144 ~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr 217 (614)
T PRK14971 144 TLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMR 217 (614)
T ss_pred HHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88874 3567888888888899999998 65 348999999999999999988888888888889999998865 444
Q ss_pred HHHHHHHH
Q 002169 502 DLAALCNE 509 (957)
Q Consensus 502 Di~~l~~~ 509 (957)
++..++..
T Consensus 218 ~al~~Lek 225 (614)
T PRK14971 218 DALSIFDQ 225 (614)
T ss_pred HHHHHHHH
Confidence 55444443
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=125.38 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=128.9
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------EEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------FLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------~i~v~~ 713 (957)
.|++|+|++++++.+...+.. -+.+..+||+||+|+||+++|+++|+.+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999999998863 2456789999999999999999999875221 111222
Q ss_pred CCcc---------cc--------ccc--------chHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcc
Q 002169 714 PELF---------SK--------WVG--------ESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSV 764 (957)
Q Consensus 714 ~~l~---------~~--------~vg--------~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~ 764 (957)
+++. ++ ..| -....+|.+.+.+.. +...|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 2222 00 000 012345666555543 34579999999976
Q ss_pred hHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 002169 765 SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELA 844 (957)
Q Consensus 765 ~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la 844 (957)
.....+.||..|+... +.++|.+|+.++.+-|.+++ |+ ..+.|++++.++..++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 3456778999998653 45778888999999999999 87 58999999999999888876432221 12346788
Q ss_pred HHccCCcHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICR 860 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~ 860 (957)
....| +.+++..+++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 88888 6666666554
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=121.16 Aligned_cols=103 Identities=22% Similarity=0.229 Sum_probs=63.3
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC------------CCCchhhhhCCCCcce
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 456 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~------------~~~ld~al~r~gRfd~ 456 (957)
|.||||||+|.|- ..-..-|...|+. .-.-+||++||+ |.-+|..|+. |+ -
T Consensus 279 pGVLFIDEvHmLD-----------iEcFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----------IECFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-L 341 (398)
T ss_dssp E-EEEEESGGGSB-----------HHHHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-E
T ss_pred cceEEecchhhcc-----------HHHHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-E
Confidence 7799999988772 2333444455543 334588899996 5567777776 65 3
Q ss_pred eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 457 ~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
.|...+++.++..+|++..+......+++..++.|++.....+-+..-+|+.
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~ 393 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLIT 393 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhh
Confidence 4788899999999999999999999999999998887765555444444443
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.8e-10 Score=135.52 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=121.1
Q ss_pred cceeeC--CCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCC------CeEEEEeCC
Q 002169 682 GILMFG--PPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA------PSIIFFDEI 748 (957)
Q Consensus 682 giLL~G--PpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~------p~ILfiDEi 748 (957)
+-+..| |++.||||+|+|||+++ +.+++.+++++..+ ...+|.++..+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456678 99999999999999997 56899999988532 346677766544322 369999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHH
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~ 828 (957)
|.|. ...++.|+..|+.. ..++.+|++||+++.+.+++++ || ..+.|++|+.++....++..
T Consensus 640 D~Lt-------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 640 DALT-------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ccCC-------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9773 34577899999853 4578999999999999999998 87 58999999999988888888
Q ss_pred HhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 829 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 829 l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
+.+.++. ++..+..++..+.| +.|...++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7765543 34568889999998 5555555555443
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=136.17 Aligned_cols=259 Identities=19% Similarity=0.209 Sum_probs=157.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
+..++++++|.+...+.+.+.+... ......|+|+|++|||||++|++|...+ +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4467889999999988888777542 2345679999999999999999999875 5699999998763
Q ss_pred cccc-----cchH----H---HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----
Q 002169 718 SKWV-----GESE----K---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----- 780 (957)
Q Consensus 718 ~~~v-----g~~~----~---~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----- 780 (957)
..+. |... . .....|+.|..+ +||||||+.+ ...++..|+..++...
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~G---tL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELADGG---TLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccCCC---eEEEechhhC-------------CHHHHHHHHHHHhcCcEEECC
Confidence 3211 1100 0 001224444433 9999999976 3456667888776421
Q ss_pred ----cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHH----HHHHHHHHHhc----CCCCCccc--
Q 002169 781 ----QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETD----REEIFRIHLRK----IPCSSDVN-- 839 (957)
Q Consensus 781 ----~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~e----r~~Il~~~l~~----~~~~~~~~-- 839 (957)
...++.+|++|+..-. .+...|+|.. .+.+..|...+ ...+++.++.+ ++....+.
T Consensus 324 ~~~~~~~~~riI~~s~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~ 400 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLE---EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPS 400 (534)
T ss_pred CCceEeecEEEEEeCCCCHH---HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 0125889999985421 2233445532 23334444443 33455555432 32222222
Q ss_pred -HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-----------------------------
Q 002169 840 -IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ----------------------------- 889 (957)
Q Consensus 840 -l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~----------------------------- 889 (957)
+..|.....--+.++++++++.|+..+ +...|+.+|+...+....
T Consensus 401 a~~~L~~~~WPGNvrEL~~v~~~a~~~~-----~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (534)
T TIGR01817 401 AIRVLMSCKWPGNVRELENCLERTATLS-----RSGTITRSDFSCQSGQCLSPMLAKTCPHGHISIDPLAGTTPPHSPAS 475 (534)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC-----CCCcccHHHCchhhccccccccccccccccccccccccccccccccc
Confidence 344444443336899999999888654 234577777642221000
Q ss_pred ---CCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 890 ---PSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 890 ---p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
|... .... .+.+++..+........++..+.++..| .+||.++|.
T Consensus 476 ~~~~~~~-~~~~-~~~~Er~~i~~aL~~~~gn~~~aA~~LGisr~tLy~klk~ 526 (534)
T TIGR01817 476 AALPGEP-GLSG-PTLSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRK 526 (534)
T ss_pred ccccccc-cchh-HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 0000 0111 2336777777777777888888777776 789999886
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=122.76 Aligned_cols=170 Identities=27% Similarity=0.371 Sum_probs=116.1
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---------------------
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--------------------- 705 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--------------------- 705 (957)
+++|.+++...+..++... + +.+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5667777777776665411 1 2333599999999999999999999886
Q ss_pred ---CcEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc
Q 002169 706 ---LNFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 778 (957)
Q Consensus 706 ---~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~ 778 (957)
..++.++.++....- .....++.+...... +...|++|||+|.+. ....+.++..++.
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-------------~~A~nallk~lEe 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-------------EDAANALLKTLEE 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-------------HHHHHHHHHHhcc
Confidence 477888887764421 124445555554433 345799999999874 3556788888884
Q ss_pred cccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHH
Q 002169 779 LHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLI 858 (957)
Q Consensus 779 ~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l 858 (957)
+..+..+|++||+++.+-+.+.+ |+ ..+.|++|.........+ +..+..++....| |++..
T Consensus 136 --p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~~~~g----d~r~~ 196 (325)
T COG0470 136 --PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAAVAEG----DARKA 196 (325)
T ss_pred --CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh----------ccchhHHHHHHHH----HHHcC
Confidence 45688999999999999999998 87 477887755544444333 3345555555554 55555
Q ss_pred HHH
Q 002169 859 CRE 861 (957)
Q Consensus 859 ~~e 861 (957)
++.
T Consensus 197 i~~ 199 (325)
T COG0470 197 INP 199 (325)
T ss_pred CCH
Confidence 443
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-09 Score=127.78 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc------cccccc----chhHHHHHHHHHHHhccCCeEEEEcCc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE------VVSQNY----GESEQALHEVFDSASQSAPAVVFIDEL 397 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~------l~~~~~----ge~e~~i~~vf~~a~~~~p~IL~IDEi 397 (957)
..-++||.||..+|||+++..+|.+.|..|+.||-.+ .++.|+ |..+.+-+.+.+..+.+ ..|++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeecc
Confidence 3457999999999999999999999999999998643 334443 22232323333333333 49999998
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhcc------------ccCCCeEEEEecCCCC------CchhhhhCCCCcceeee
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDGV------------CRTDGVLVIAATNRPD------SIEPALRRPGRLDREIE 459 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~l------------~~~~~v~vI~ttN~~~------~ld~al~r~gRfd~~I~ 459 (957)
.-. ...++..|..++|.- ..+.++.+++|-|+|- -+..|+|. ||-. ++
T Consensus 965 NLA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE-~h 1030 (4600)
T COG5271 965 NLA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLE-MH 1030 (4600)
T ss_pred ccC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHh-hh
Confidence 533 234666677777752 3456788888888875 57789998 9954 77
Q ss_pred ecCCCHHHHHHHHHHHH
Q 002169 460 IAVPSPAQRLEILHALL 476 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l 476 (957)
|..-.+++...||+..+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 88888888888887543
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-10 Score=118.78 Aligned_cols=144 Identities=14% Similarity=0.272 Sum_probs=101.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE 409 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~ 409 (957)
..++||||||||||+|++++++..+..++. .... ....+ ...++|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999887653322 1100 00111 123699999998441
Q ss_pred hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC--chhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHcCCCCCCCh
Q 002169 410 ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS--IEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLSGMEHSLLD 485 (957)
Q Consensus 410 ~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~--ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~~~~~~l~~ 485 (957)
. ..|..+++.+...+..++|+++..|.. + |++++ |+.. .+.+..|+.+.+..+++..+...++.+++
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1 245556555555666777777766654 5 78888 7752 58999999999999999988877888999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 486 SEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 486 ~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+.++.++.+..|- .+.+..++..
T Consensus 170 ev~~~L~~~~~~d-~r~l~~~l~~ 192 (214)
T PRK06620 170 QIIDFLLVNLPRE-YSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHccCC-HHHHHHHHHH
Confidence 9999999988653 3444444443
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=136.78 Aligned_cols=215 Identities=27% Similarity=0.343 Sum_probs=133.6
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-------------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------------------- 704 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------------------- 704 (957)
-|.+|+|++.++..+.-+...+ ...++||.||+|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3778999999998776554321 12469999999999999999999887
Q ss_pred ----------------CCcEEEEeCCCcccccccch--HHHH--------HHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 705 ----------------GLNFLAVKGPELFSKWVGES--EKAV--------RSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 705 ----------------~~~~i~v~~~~l~~~~vg~~--~~~i--------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
..+|+.+.........+|.. .+.+ ..++..|..+ |||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~G---iL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRG---ILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCC---eEEeChhhhC-------
Confidence 24666665443322223321 1111 2233334333 9999999976
Q ss_pred CCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCC-CCCChhhhCCCCcceecccCCCC-HHHHHHHH
Q 002169 759 SDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRP-DKIDPALLRPGRFDRLLYVGPPN-ETDREEIF 825 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~-~~id~aLlr~gRfd~~i~~~~P~-~~er~~Il 825 (957)
...+++.|+..|+.-. ...++++|+++|.. ..+.++|+. ||+..|.++.+. .+++.+++
T Consensus 139 ------~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 139 ------DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 4566778888886321 12357889988854 357899999 999888887765 46677777
Q ss_pred HHHHhcC--C---------------------------C-CCcccHHHHHHHcc--CC-cHHHHHHHHHHHHHHHHHHhcC
Q 002169 826 RIHLRKI--P---------------------------C-SSDVNIRELACLSE--GC-TGADISLICREAAISAIEENLD 872 (957)
Q Consensus 826 ~~~l~~~--~---------------------------~-~~~~~l~~la~~t~--g~-sg~dl~~l~~eA~~~a~~~~~~ 872 (957)
+...... + + ..+..+..++..+. |. +.|-...+++-|...|..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g-- 288 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDG-- 288 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC--
Confidence 6432200 0 0 01111223333221 33 23444455555555555443
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 002169 873 ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 873 ~~~It~~d~~~al~~~~p~ 891 (957)
...|+.+|+..|+.-+.++
T Consensus 289 r~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLPH 307 (633)
T ss_pred CCcCCHHHHHHHHHHHhhh
Confidence 6789999999988776544
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=134.11 Aligned_cols=261 Identities=18% Similarity=0.198 Sum_probs=148.8
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
....|++++|.+...+.+.+.+... ......++|+|++||||+++|+++...+ +.+|+.++|..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 5678999999998777776665321 1235569999999999999999997665 4699999998764
Q ss_pred ccc-----ccchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----
Q 002169 718 SKW-----VGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----- 780 (957)
Q Consensus 718 ~~~-----vg~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----- 780 (957)
... .|... .....+|+.|..+ .||||||+.+ ...++..|+..++...
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCC
Confidence 321 11110 1113456666555 9999999976 3455566777775421
Q ss_pred ----cCCcEEEEEecCCCCC-------CChhhhCCCCcceecccCCCCHHHHH----HH----HHHHHhcCCCC-CcccH
Q 002169 781 ----QRVNVTVIAATNRPDK-------IDPALLRPGRFDRLLYVGPPNETDRE----EI----FRIHLRKIPCS-SDVNI 840 (957)
Q Consensus 781 ----~~~~v~VI~aTN~~~~-------id~aLlr~gRfd~~i~~~~P~~~er~----~I----l~~~l~~~~~~-~~~~l 840 (957)
...++.||++|+.+-. ..+.|.. |+. .+.+..|...+|. .+ ++.+..+.+.. ..+..
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1236789999876531 2333443 432 3445566665554 22 33333344332 12333
Q ss_pred H---HHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH--HHHHhh-CC--CchHHHHHHHHHHHHHhcCchh
Q 002169 841 R---ELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK--TAIRHV-QP--SEIHSYKELSAKFQRLVHSNAE 912 (957)
Q Consensus 841 ~---~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~--~al~~~-~p--~~~~~y~~~~~~~~~~v~~~~~ 912 (957)
+ .|.....--+.+++++++.+|+..+ +...|+.+|+. ...... .+ .....+.+..+.+++.++....
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~-----~~~~i~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~~E~~~i~~~l 483 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL-----EGYELRPQDILLPDYDAAVAVGEDAMEGSLDEITSRFERSVLTRLY 483 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC-----CCCcccHHHcCCcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 3 3333322226799999998887654 23456777642 110000 00 0001233444556666555433
Q ss_pred hhhcccccccchhhh---hhhhhccCCc
Q 002169 913 ADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 913 ~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
.... ...+.++..| .+||.++|.-
T Consensus 484 ~~~~-~~~~aA~~LGisr~tL~rkl~~~ 510 (520)
T PRK10820 484 RNYP-STRKLAKRLGVSHTAIANKLREY 510 (520)
T ss_pred HHCC-CHHHHHHHhCCCHHHHHHHHHHc
Confidence 3221 2334444444 7799998873
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-10 Score=118.81 Aligned_cols=176 Identities=27% Similarity=0.403 Sum_probs=121.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
..|+||+++|+.+.-++.--+++.++-..+. --.|++||++||+|+|||.+||-+|+..+.||+.|.+..+.. .|+|.
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 3689999999998877754333332222221 235889999999999999999999999999999998765521 12221
Q ss_pred hHHH----------------------------------------------------------------------------
Q 002169 724 SEKA---------------------------------------------------------------------------- 727 (957)
Q Consensus 724 ~~~~---------------------------------------------------------------------------- 727 (957)
....
T Consensus 95 DVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIe 174 (444)
T COG1220 95 DVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIE 174 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEE
Confidence 1000
Q ss_pred -------------------------H-----------------------------------------HHHHHHHHhCCCe
Q 002169 728 -------------------------V-----------------------------------------RSLFAKARANAPS 741 (957)
Q Consensus 728 -------------------------i-----------------------------------------r~~f~~A~~~~p~ 741 (957)
+ +..+..|.+. .
T Consensus 175 iev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~--G 252 (444)
T COG1220 175 IEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQN--G 252 (444)
T ss_pred EEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc--C
Confidence 0 2233334333 3
Q ss_pred EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEec----CCCCCCChhhhCCCCcce
Q 002169 742 IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 742 ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aT----N~~~~id~aLlr~gRfd~ 809 (957)
|+||||||.++...+.. +..-.-+-++..||-.++|-. ..+++++|++. ..|..+-|.|. |||.-
T Consensus 253 IvFIDEIDKIa~~~~~g-~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 253 IVFIDEIDKIAKRGGSG-GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred eEEEehhhHHHhcCCCC-CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 99999999998765422 222223456778888887642 34568888865 46777888875 69999
Q ss_pred ecccCCCCHHHHHHHHH
Q 002169 810 LLYVGPPNETDREEIFR 826 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~ 826 (957)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998887774
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-10 Score=135.08 Aligned_cols=143 Identities=23% Similarity=0.296 Sum_probs=104.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeCCCccc--ccccchHHHHHHHHHHHH-hCCCeEE
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGPELFS--KWVGESEKAVRSLFAKAR-ANAPSII 743 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~~~l~~--~~vg~~~~~ir~~f~~A~-~~~p~IL 743 (957)
.+..++.+|+|.||+|||.++.-+|... +..++.++...+.. ++.|+.+..++.+.+++. .+..-||
T Consensus 205 Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvIL 284 (898)
T KOG1051|consen 205 RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVIL 284 (898)
T ss_pred ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEE
Confidence 3455789999999999999999999764 34677777765543 578999999999999988 5566799
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC-----CCChhhhCCCCcceecccCCCCH
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
||||+|.+....... ......+.| .. ...++++.+|+||...+ .-||++-| ||+ .+.++.|+.
T Consensus 285 figelh~lvg~g~~~-----~~~d~~nlL-kp---~L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~ 352 (898)
T KOG1051|consen 285 FLGELHWLVGSGSNY-----GAIDAANLL-KP---LLARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSV 352 (898)
T ss_pred EecceeeeecCCCcc-----hHHHHHHhh-HH---HHhcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcc
Confidence 999999887654331 122223322 22 22355699999887333 24999999 996 778999998
Q ss_pred HHHHHHHHHHHhc
Q 002169 819 TDREEIFRIHLRK 831 (957)
Q Consensus 819 ~er~~Il~~~l~~ 831 (957)
+....|++....+
T Consensus 353 ~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 353 ENLSLILPGLSER 365 (898)
T ss_pred cchhhhhhhhhhh
Confidence 8777777766655
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-10 Score=117.48 Aligned_cols=170 Identities=19% Similarity=0.324 Sum_probs=110.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
..++||||+|+|||.|.+|++++. +..++.+++.++...+...... .+..+.+..+ ...+|+||+++.+...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 458999999999999999998874 4567778776665443322111 1222223332 3459999999988432
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcce--ecccCCCCHHHHHHHHHHHH
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFDR--LLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd~--~i~~~~P~~~er~~Il~~~l 829 (957)
......+...++.....+..+||.+...|.. +++.|.+ ||.. .+.+.+|+.++|.+|++..+
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 3445566677776656656666555555554 5778888 8754 77889999999999999999
Q ss_pred hcCCCCCccc-HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 830 RKIPCSSDVN-IRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 830 ~~~~~~~~~~-l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
...++.-+.+ ...++....+ +.++|..+++.....+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 8877664333 5667777765 8889988888665544
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-10 Score=115.47 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=102.0
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCc------------------------EEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLN------------------------FLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~------------------------~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|+|||++|+++|+.+... +..+.... . .-....++.+++
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 345679999999999999999999886431 22222111 0 012356666676
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. ....|++|||+|.+. ...++.|+..|+.. ..+..+|++|+.+..+.+++.+ |+ .
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~-------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN-------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC-------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-E
Confidence 6654 345799999999773 33466788888863 3467777888888999999998 77 4
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
++.+++|+.++..++++.. ++. +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999988888776 332 3346666666665
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-10 Score=113.85 Aligned_cols=184 Identities=18% Similarity=0.238 Sum_probs=119.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-C----CcEEEEeCC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-G----LNFLAVKGP 714 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~----~~~i~v~~~ 714 (957)
..+..++||+|.++..+.+.-.... ..-.+++|.|||||||||-+.++|+++ | -.+.+++++
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 4555678999999999988766542 223579999999999999999999986 3 245667776
Q ss_pred CcccccccchHHHHHHHHHHHHhCCC----eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAP----SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 790 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p----~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a 790 (957)
+-.+- ...+.--+.|+.-+..-| .|+++||+|++... .+.+|-+.|+=. .....+..+
T Consensus 88 deRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiy--S~ttRFala 149 (333)
T KOG0991|consen 88 DERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIY--SNTTRFALA 149 (333)
T ss_pred ccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHH--cccchhhhh
Confidence 64321 112233345655544333 59999999988432 223344444422 335678889
Q ss_pred cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHh--cCCCCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 791 TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~--~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
+|..+.|-+.+.+ |+. ++.|...+..+...-+....+ +.+. .+.-++.+....+| |++..++..
T Consensus 150 CN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred hcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC-CcchHHHhhhhccc----hHHHHHHHH
Confidence 9999999888887 775 555555555444333333333 3333 34457888888888 888887753
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=115.24 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=114.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
..++|+||+|+|||+|+++++...+..++... ++. ..++..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-----------~~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-----------SDAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-----------hHHHHhhhc---CeEEEECCCCCCC-------
Confidence 34899999999999999999988766544332 211 112222222 3899999996521
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS 835 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~ 835 (957)
.. .++...++.....+..+||.++..|.. ..+.|++ ||. .++.+..|+.++|.++++.++...++.
T Consensus 102 ----~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 ----DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred ----CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 234455554444445556655554442 3678888 774 688999999999999999999876654
Q ss_pred -CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 836 -SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 836 -~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
.+..++.+++...| +.+.+..+++.....+... ...||...++++++.+
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~---~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER---KSRITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhh
Confidence 34456778888886 6666666665555444443 4568988888888764
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=121.07 Aligned_cols=207 Identities=18% Similarity=0.264 Sum_probs=140.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----EEEEeccccccccc-
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-----LFTVNGPEVVSQNY- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-----~i~i~~~~l~~~~~- 370 (957)
.+.+.+.+++++..++...+.. ..|.++++|||||||||++++.+++++... +++|||....+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 4789999999999986555332 234569999999999999999999888443 89999976544321
Q ss_pred --------------chh-HHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 371 --------------GES-EQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 371 --------------ge~-e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
|.. ......+++.... ...-|+++||+|.|..+.+ .++-.|+...+.. ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 111 1222333333332 3467999999999976542 3444454444443 456889
Q ss_pred EEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcCCC--cHHHHHHH
Q 002169 435 IAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATHGF--VGADLAAL 506 (957)
Q Consensus 435 I~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~g~--~gaDi~~l 506 (957)
|+.+|..+ .+++.+.+ +|. .+|.|++++.+|..+|+...... ....+++..++..|...... ..+-...+
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 99999864 67788877 442 34899999999999999988764 23445666666665443222 33444568
Q ss_pred HHHHHHHHHHHhccccc
Q 002169 507 CNEAALVCLRRYSKIQT 523 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~ 523 (957)
|+.|+..|-++......
T Consensus 238 lr~A~eiAe~~~~~~v~ 254 (366)
T COG1474 238 LRRAGEIAEREGSRKVS 254 (366)
T ss_pred HHHHHHHHHhhCCCCcC
Confidence 88898888877655443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-10 Score=131.82 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=67.8
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEe-----------CCCccc---------ccc-c----------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVK-----------GPELFS---------KWV-G---------- 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~-----------~~~l~~---------~~v-g---------- 722 (957)
.+.+...|.|+||+|+|||||.|.|++..+. ..|.+. ..++.. .+. +
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 3455666999999999999999999776531 111111 111110 001 0
Q ss_pred -----------------chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcE
Q 002169 723 -----------------ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785 (957)
Q Consensus 723 -----------------~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 785 (957)
...++.|..+++.....|.+|+|||++.-+ .-..+.+|-..|... .-
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL------------Di~s~~aLe~aL~~f----~G 487 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL------------DIESLEALEEALLDF----EG 487 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC------------CHHHHHHHHHHHHhC----CC
Confidence 012223788899889999999999998543 233334444444433 33
Q ss_pred EEEEecCCCCCCChhh
Q 002169 786 TVIAATNRPDKIDPAL 801 (957)
Q Consensus 786 ~VI~aTN~~~~id~aL 801 (957)
.||++||+.+.++.-.
T Consensus 488 tvl~VSHDr~Fl~~va 503 (530)
T COG0488 488 TVLLVSHDRYFLDRVA 503 (530)
T ss_pred eEEEEeCCHHHHHhhc
Confidence 5889999887765543
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=124.97 Aligned_cols=222 Identities=17% Similarity=0.189 Sum_probs=127.8
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeC-----CCccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKG-----PELFS 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~-----~~l~~ 718 (957)
..++|.+++++.+..++. ...++||+||||||||++|++|+..++. +|..+.+ .++++
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 457888888887766653 3577999999999999999999997653 4443322 23332
Q ss_pred ccccchHHHH--HHHHHHHHhC---CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcE
Q 002169 719 KWVGESEKAV--RSLFAKARAN---APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNV 785 (957)
Q Consensus 719 ~~vg~~~~~i--r~~f~~A~~~---~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v 785 (957)
.. +-... ..-|.....+ ...+||+|||.. +...+++.||..|+... .....
T Consensus 85 ~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r-------------asp~~QsaLLeam~Er~~t~g~~~~~lp~r 148 (498)
T PRK13531 85 PL---SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK-------------AGPAILNTLLTAINERRFRNGAHEEKIPMR 148 (498)
T ss_pred cH---HHhhhhhcCchhhhcCCccccccEEeeccccc-------------CCHHHHHHHHHHHHhCeEecCCeEEeCCCc
Confidence 21 00110 1122222221 234999999974 35778888999994321 11123
Q ss_pred EEEEecCCCCC---CChhhhCCCCcceecccCCCCH-HHHHHHHHHHHhc--CCC--CCcccH-----------------
Q 002169 786 TVIAATNRPDK---IDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRK--IPC--SSDVNI----------------- 840 (957)
Q Consensus 786 ~VI~aTN~~~~---id~aLlr~gRfd~~i~~~~P~~-~er~~Il~~~l~~--~~~--~~~~~l----------------- 840 (957)
++++|||.... ..+++.. ||-..+.+|+|+. ++-.+++...... .+. ..-+..
T Consensus 149 fiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d 226 (498)
T PRK13531 149 LLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPD 226 (498)
T ss_pred EEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCH
Confidence 45666674322 3358988 9977889999974 5557777654221 111 000111
Q ss_pred ------HHHHHH---cc---CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHH
Q 002169 841 ------RELACL---SE---GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKF 903 (957)
Q Consensus 841 ------~~la~~---t~---g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~ 903 (957)
..+... +. ..|.|-...+++-|...|.... ...|+.+|+. .+..+....++....+.+.+
T Consensus 227 ~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~G--R~~V~p~Dv~-ll~~vL~HRl~~~~~v~~~~ 298 (498)
T PRK13531 227 HVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSG--RDAIAPIDLI-LLKDCLWHDAQSLNLLQQQL 298 (498)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCC--CCCCCHHHHH-HhHHHhccCHHHHHHHHHHH
Confidence 112221 11 1455666666665555555554 6789999998 66555555444333333333
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=129.82 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=46.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+.+|..-|++++|++++++.+..++.. .++++|+||||||||++|+++|..++..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 345677899999999999988877642 2489999999999999999999988654
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=127.58 Aligned_cols=197 Identities=22% Similarity=0.295 Sum_probs=129.0
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL 716 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l 716 (957)
....+++++|.+...+++++.+... .+...++|++|++||||+++|++|.... ..|||.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3445688889888877777776531 2345569999999999999999997543 569999999776
Q ss_pred ccc-------------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---
Q 002169 717 FSK-------------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--- 780 (957)
Q Consensus 717 ~~~-------------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--- 780 (957)
... +.| ....-..+|+.|.++ +||+|||+.+ ....+..|++.|+...
T Consensus 142 ~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 142 SENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRR 204 (403)
T ss_pred CcCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-------------CHhHHHHHHHHHHcCceEe
Confidence 433 223 233346788999888 9999999976 3455667888888631
Q ss_pred ------cCCcEEEEEecCCCCCCChhhhC--C---CCcceecccCCCCHHHHH----H----HHHHHHhcCCCCCcccHH
Q 002169 781 ------QRVNVTVIAATNRPDKIDPALLR--P---GRFDRLLYVGPPNETDRE----E----IFRIHLRKIPCSSDVNIR 841 (957)
Q Consensus 781 ------~~~~v~VI~aTN~~~~id~aLlr--~---gRfd~~i~~~~P~~~er~----~----Il~~~l~~~~~~~~~~l~ 841 (957)
...+|.+|+|||. .++.+++. . -|+ .+.+..|...+|. . +++...++.+...-.+..
T Consensus 205 vG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 205 VGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred cCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 2347999999983 33333332 0 133 3344556665553 2 334444555544333322
Q ss_pred HH-----HHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 842 EL-----ACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 842 ~l-----a~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+. ++...| +.++++++++.++..+....
T Consensus 281 ~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 281 EALRALLAYDWPG-NIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHHHHHHhCCCCC-cHHHHHHHHHHHHHHhcccc
Confidence 22 223345 68999999999998886443
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=115.16 Aligned_cols=139 Identities=27% Similarity=0.375 Sum_probs=99.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG 408 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~ 408 (957)
...++|+||+|+|||+|+++++...+..+ ++..++.. .++..... .+|+|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 45599999999999999999998766543 33222211 11122212 38999999976211
Q ss_pred chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCCCCC
Q 002169 409 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGMEHSL 483 (957)
Q Consensus 409 ~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~~~l 483 (957)
...|+.+++.+...+..++|+++..|.. ..+.+++ ||. ..+++..|+.+.|.+|++..+...+..+
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1236666766655556666666655543 3577887 764 5689999999999999999999888899
Q ss_pred ChHHHHHHHHHcCC
Q 002169 484 LDSEVEYLSMATHG 497 (957)
Q Consensus 484 ~~~~l~~La~~t~g 497 (957)
+++.++.|+++..|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999998774
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=114.49 Aligned_cols=128 Identities=30% Similarity=0.421 Sum_probs=89.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC----CC-CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG----TR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SK 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~----~~-~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~ 719 (957)
+.++||+.+|+.|.-++. .|-..+.... .. ...++||+||+|||||+||+.+|+.++.||..-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 568999999998866653 2222222111 11 234599999999999999999999999999988887775 46
Q ss_pred cccchHHHH-HHHH-------HHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhcc
Q 002169 720 WVGESEKAV-RSLF-------AKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGL 779 (957)
Q Consensus 720 ~vg~~~~~i-r~~f-------~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~ 779 (957)
|+|+...++ ..++ ++|..+ |+||||||.++......+ ...-..+-++.+||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerG---IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERG---IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCC---eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 999876665 3333 233333 999999999986653222 11223467888999999975
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=124.76 Aligned_cols=167 Identities=25% Similarity=0.360 Sum_probs=118.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHh--------ccCCeEEEEcCc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS--------QSAPAVVFIDEL 397 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~--------~~~p~IL~IDEi 397 (957)
.++.+-+||+||||-||||||+.+|++.|..+++||+++-.+ ...+++.++.|. ...|.+|+||||
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 345567789999999999999999999999999999988533 233444443332 246999999999
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhc--ccc---CC--------------CeEEEEecCCCCCchhhhhCCCCcceee
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDG--VCR---TD--------------GVLVIAATNRPDSIEPALRRPGRLDREI 458 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~--l~~---~~--------------~v~vI~ttN~~~~ld~al~r~gRfd~~I 458 (957)
|.-. ...+..++.++.. ... .. .--||++||.. --|+||.---|...|
T Consensus 397 DGa~-----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 397 DGAP-----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEII 463 (877)
T ss_pred cCCc-----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEE
Confidence 8542 4455666666652 100 00 13589999864 357775433577788
Q ss_pred eecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 459 EIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 459 ~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
.|..|...-..+-|+.++...+...+...+..|++.+++ ||++-++.--..+.
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 999999988888899888888888788888888887764 77766665544443
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=122.41 Aligned_cols=159 Identities=22% Similarity=0.354 Sum_probs=100.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCC-CeEEEEcCCCChHHHHHHHHHHHcC-------C--cEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPT-KGVLLHGPPGTGKTSLARLCAHDSG-------V--NLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~-~~vLL~GppGtGKTtLaralA~~l~-------~--~~i~i~ 361 (957)
...|.+|.|.++.++.+.-.. +.++ .|+||+|+|||||||+|++++..+. . .+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~-------------~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTA-------------IDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHH-------------hccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 356788999999888766432 1123 5899999999999999999999883 2 111111
Q ss_pred c-ccc--------ccc---------------ccchh--HHHH---HHHHHH--HhccCCeEEEEcCccccccCCcCCCch
Q 002169 362 G-PEV--------VSQ---------------NYGES--EQAL---HEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEE 410 (957)
Q Consensus 362 ~-~~l--------~~~---------------~~ge~--e~~i---~~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~ 410 (957)
+ .+. ... -.|.. +..+ +..|+. .......+||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 000 000 01100 0000 001110 001113499999998873
Q ss_pred HHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCCH-HHHHHHHHHHH
Q 002169 411 LSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPSP-AQRLEILHALL 476 (957)
Q Consensus 411 ~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~~-~~r~~Il~~~l 476 (957)
..++..|++.|+.-. ...++++|+++|+.+ .+++++.. ||...+.++.|.. ++|.+|+....
T Consensus 142 --~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 --DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 456677888876421 234688999998755 68889988 9998899988877 88899998743
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-10 Score=132.13 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4667889999999999999999999999765
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-10 Score=131.04 Aligned_cols=31 Identities=35% Similarity=0.455 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4677899999999999999999999999865
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-10 Score=120.09 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=69.7
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------------- 706 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------------- 706 (957)
.|+||+||+.+|..+.-+... ..++||+||||||||++|+++...+.-
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 378999999999998777642 368999999999999999999976421
Q ss_pred -----------cEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 707 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 707 -----------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
||....-+.-....+|......-..+..|..+ |||+||+-. +...+++.|+.-
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~e-------------f~~~vld~Lr~p 129 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNE-------------FDRSVLDALRQP 129 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTT-------------S-HHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhh-------------cCHHHHHHHHHH
Confidence 11111110000001111111011234555555 999999974 467889999998
Q ss_pred Hhccc-----------cCCcEEEEEecC
Q 002169 776 LDGLH-----------QRVNVTVIAATN 792 (957)
Q Consensus 776 ld~~~-----------~~~~v~VI~aTN 792 (957)
|+.-. -..+.++|+|+|
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred HHCCeEEEEECCceEEEecccEEEEEec
Confidence 87431 123678889888
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=120.58 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=109.5
Q ss_pred cccccCC-hHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---------------
Q 002169 644 KWEDVGG-QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--------------- 707 (957)
Q Consensus 644 ~~~di~G-~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~--------------- 707 (957)
.|+.|.| ++.+++.+...+.. -+.+..+||+||+|+|||++|+++|+.+...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4788888 99999999888752 3456678999999999999999999876321
Q ss_pred ---------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHH
Q 002169 708 ---------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 774 (957)
Q Consensus 708 ---------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~ 774 (957)
+..+... +. .-.-..+|.+.+.+. .+...|++|||+|.+ .....+.||.
T Consensus 71 ~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHH
Confidence 2222111 00 012346677666554 234569999999976 4556788999
Q ss_pred HHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHH
Q 002169 775 ELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI 827 (957)
Q Consensus 775 ~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~ 827 (957)
.|+. +..++++|++|+.++.+-|++++ |+ ..++|++|+.++..++++.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9995 45578888899999999999999 86 5889999999887776653
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.2e-10 Score=136.58 Aligned_cols=195 Identities=18% Similarity=0.294 Sum_probs=124.2
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 718 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~ 718 (957)
+..|++++|.....+.+.+.+... .....+|+|+|++|||||++|++|...+ +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 356789999999998888777542 2345679999999999999999998765 57999999976532
Q ss_pred c-----cccch-------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc------
Q 002169 719 K-----WVGES-------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 780 (957)
Q Consensus 719 ~-----~vg~~-------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------ 780 (957)
. ..|.. .......|+.|..+ +||||||+.+ ...++..|+..|+...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~G---tL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKS---SLFLDEVGDM-------------PLELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCC---eEEEechhhC-------------CHHHHHHHHHHHHhCCEEeCCC
Confidence 1 11210 01122345655544 9999999976 4556667877776421
Q ss_pred ---cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHHH----HHHHHHh----cCCCC----Ccc
Q 002169 781 ---QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLR----KIPCS----SDV 838 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~~----Il~~~l~----~~~~~----~~~ 838 (957)
...++.+|++|+..-. .+...|+|.. .+.+..|...+|.+ +++.++. +++.. ...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~---~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLK---KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHH---HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1246899999986532 2333345543 34456677766643 3444433 33322 122
Q ss_pred cHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 839 NIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 839 ~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
.+..|.....--+.+++++++++|+..+
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2344444433336899999999998765
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-10 Score=125.42 Aligned_cols=147 Identities=32% Similarity=0.420 Sum_probs=100.6
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc--cccchH
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK--WVGESE 725 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~--~vg~~~ 725 (957)
++|.++++..+..++. ...++||.||||||||++|+++|..++.+|+.+.+..-+.. .+|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 6677777766655543 35779999999999999999999999999999998643321 112111
Q ss_pred HHH------------HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc----------ccCC
Q 002169 726 KAV------------RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL----------HQRV 783 (957)
Q Consensus 726 ~~i------------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~----------~~~~ 783 (957)
-.. .-+|.... +|+|+|||++ +...+.+.|+..|+.. .-..
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInr-------------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINR-------------APPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEecccc-------------CCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 111 11111111 4999999984 3567888899988862 1234
Q ss_pred cEEEEEecC-----CCCCCChhhhCCCCcceecccCCCCHH-HHHHHHHHH
Q 002169 784 NVTVIAATN-----RPDKIDPALLRPGRFDRLLYVGPPNET-DREEIFRIH 828 (957)
Q Consensus 784 ~v~VI~aTN-----~~~~id~aLlr~gRfd~~i~~~~P~~~-er~~Il~~~ 828 (957)
..+||+|+| ....+.+|+++ ||...++++.|+.+ +...++...
T Consensus 154 ~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 154 PFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred CCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 677888888 44567999999 99888999999544 444444433
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=117.74 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=121.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------EE-EEe---
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------LF-TVN--- 361 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------~i-~i~--- 361 (957)
..+++|.|.+..++.|...+... +.+..+||+||+|+|||++|+.+|+.+.+. .. ...
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 35678999999999999885332 234569999999999999999999887441 10 000
Q ss_pred c-----------cccc---ccc-c--c-----hhHHHHHHHHHH----HhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 362 G-----------PEVV---SQN-Y--G-----ESEQALHEVFDS----ASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 362 ~-----------~~l~---~~~-~--g-----e~e~~i~~vf~~----a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
| +++. ... . + -.-..++.+.+. +......|++|||+|.+. ...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~~a 157 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----------RNA 157 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------HHH
Confidence 1 0111 000 0 0 011233443332 223446799999999883 233
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT 495 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t 495 (957)
.+.|+..|++. ..+.++|++|+.++.+.|.+++ |+ ..+.++.|+.++..++++....... +++..+..++..+
T Consensus 158 anaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s 230 (351)
T PRK09112 158 ANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHc
Confidence 46688888873 4567777788889999999998 77 4699999999999999987432222 4566777788777
Q ss_pred CCCcHHH
Q 002169 496 HGFVGAD 502 (957)
Q Consensus 496 ~g~~gaD 502 (957)
.|-...-
T Consensus 231 ~G~pr~A 237 (351)
T PRK09112 231 KGSVRKA 237 (351)
T ss_pred CCCHHHH
Confidence 7655433
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-10 Score=106.20 Aligned_cols=128 Identities=29% Similarity=0.447 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEecccccccc--------------cchhHHHHHHHHHHHhccCCeE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPEVVSQN--------------YGESEQALHEVFDSASQSAPAV 391 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~---~i~i~~~~l~~~~--------------~ge~e~~i~~vf~~a~~~~p~I 391 (957)
+..++|+||||||||++++.+|..+... ++.+++....... ........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998775 7888876543321 1344556778888888777899
Q ss_pred EEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC-CCCchhhhhCCCCcceeeeecCC
Q 002169 392 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-PDSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 392 L~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~-~~~ld~al~r~gRfd~~I~i~~P 463 (957)
|+|||++.+....... ..................+..+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999886432110 0000000001111223456788999986 3445555555 88887777554
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-11 Score=115.21 Aligned_cols=109 Identities=28% Similarity=0.401 Sum_probs=71.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc------cccccch---hHHHHHHHHHHHhccCCeEEEEcCccccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV------VSQNYGE---SEQALHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l------~~~~~ge---~e~~i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
+|+|+||||||||++|+.+|..++.+++.+++... .+.+.-. .+..-..+.+.+ ..+.|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 58999999999999999999999999998887653 2222110 000000000001 14679999999866
Q ss_pred cCCcCCCchHHHHHHHHHHHHhhcc-----------ccCC------CeEEEEecCCCC----CchhhhhCCCCc
Q 002169 402 PARKDGGEELSQRMVATLLNLMDGV-----------CRTD------GVLVIAATNRPD----SIEPALRRPGRL 454 (957)
Q Consensus 402 ~~~~~~~~~~~~~i~~~Ll~~ld~l-----------~~~~------~v~vI~ttN~~~----~ld~al~r~gRf 454 (957)
...+...|+.+++.- .... ++.+|+|+|+.+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 245666677777652 1112 489999999998 89999999 87
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=105.45 Aligned_cols=126 Identities=34% Similarity=0.434 Sum_probs=82.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCc---EEEEeCCCcccc--------------cccchHHHHHHHHHHHHhCCCeE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKGPELFSK--------------WVGESEKAVRSLFAKARANAPSI 742 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~---~i~v~~~~l~~~--------------~vg~~~~~ir~~f~~A~~~~p~I 742 (957)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.|....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4569999999999999999999998775 777777654332 12334566778899999888899
Q ss_pred EEEeCCchhhhhcCCCCCCCcchHHHHHHH--HHHHhccccCCcEEEEEecCC-CCCCChhhhCCCCcceecccCCC
Q 002169 743 IFFDEIDGLAAIRGKESDGVSVSDRVMSQL--LVELDGLHQRVNVTVIAATNR-PDKIDPALLRPGRFDRLLYVGPP 816 (957)
Q Consensus 743 LfiDEid~l~~~r~~~~~~~~~~~~v~~~L--L~~ld~~~~~~~v~VI~aTN~-~~~id~aLlr~gRfd~~i~~~~P 816 (957)
||+||++.+...... ...... ...........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE---------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH---------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988543211 000000 001111123446788888886 3334445554 88877777544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=120.48 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
+..+++||||+|.|||+|++|++++. +..++++...+++..++......-..-|+.-. .-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 56789999999999999999999876 34577787777766554443333333444443 346999999999975
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch---hhhhCCCCcce--eeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE---PALRRPGRLDR--EIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld---~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+. +...+|...+..+...++.+++.+-..|.++. |.|++ ||.. .+.+..|+.+.|..||+....
T Consensus 190 k~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 43 22345666666665566655555555566544 88888 8765 578999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+..++++.++.++.+... +.+++...+...
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l 290 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRL 290 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 99999999999999988654 344555444443
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=110.42 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=100.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc------------------------EEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN------------------------LFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~------------------------~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||+|+|||++|++++..+-.. +..+... +.. -....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 35679999999999999999999887432 1111110 000 112455555655
Q ss_pred Hhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 ASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+.. ....|++|||+|.+.. ...+.|+..|+.. .....+|++++.+..+.+++++ |+ ..++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEee
Confidence 543 3467999999998842 2345688888773 3466778888888999999998 66 3699
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
+..|+.++..++++.. + +++..++.++..+.|-
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 9999999998888765 2 4677788888777653
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=126.73 Aligned_cols=208 Identities=22% Similarity=0.280 Sum_probs=126.9
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC------------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------------------ 705 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~------------------ 705 (957)
.|+++.|++.+++.+.-.+ ....+++|+||||||||++|+++++.+.
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 6788999999877654433 3456799999999999999999987531
Q ss_pred ----------CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 706 ----------LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 706 ----------~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
.||.....+......+|.........+..|..+ +|||||++.+ ...++..|++.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~G---vLfLDEi~e~-------------~~~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNG---VLFLDELPEF-------------KRSVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCCC---eEecCChhhC-------------CHHHHHHHHHH
Confidence 122211111110011111111112345566555 9999999865 45667777777
Q ss_pred Hhccc-----------cCCcEEEEEecCCC------C-----------------CCChhhhCCCCcceecccCCCCHHH-
Q 002169 776 LDGLH-----------QRVNVTVIAATNRP------D-----------------KIDPALLRPGRFDRLLYVGPPNETD- 820 (957)
Q Consensus 776 ld~~~-----------~~~~v~VI~aTN~~------~-----------------~id~aLlr~gRfd~~i~~~~P~~~e- 820 (957)
|+... ...++.+|+++|.- + .+..+|+. |||-.+.++.++..+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 76431 12478999999852 1 47888998 999999998765432
Q ss_pred ------------HHHHHHHHH------hcC---CCCCccc-------------HHH-H--HHHccCCcHHHHHHHHHHHH
Q 002169 821 ------------REEIFRIHL------RKI---PCSSDVN-------------IRE-L--ACLSEGCTGADISLICREAA 863 (957)
Q Consensus 821 ------------r~~Il~~~l------~~~---~~~~~~~-------------l~~-l--a~~t~g~sg~dl~~l~~eA~ 863 (957)
|.++.+... ... .+..... ..+ + +....+.|.|....+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 223322111 111 1111111 111 1 22223578888888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH
Q 002169 864 ISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 864 ~~a~~~~~~~~~It~~d~~~al~ 886 (957)
..|-.+. ...|+.+|+.+|+.
T Consensus 477 TiAdL~g--~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKE--EKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcC--CCCCCHHHHHHHHh
Confidence 7776664 67899999999875
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=123.05 Aligned_cols=140 Identities=22% Similarity=0.379 Sum_probs=87.3
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-------cEEEEeCC----
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAVKGP---- 714 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-------~~i~v~~~---- 714 (957)
+++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+.. .++.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 175 NDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 445555556655554442 3578999999999999999999988743 12333321
Q ss_pred Cccccc----ccc--hHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc--------
Q 002169 715 ELFSKW----VGE--SEKAVRSLFAKARAN--APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG-------- 778 (957)
Q Consensus 715 ~l~~~~----vg~--~~~~ir~~f~~A~~~--~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~-------- 778 (957)
+++..+ +|. ....+..++..|+.. .|++||||||++... .+++..++..|+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani------------~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL------------SKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH------------HHhhhhhhhhccccccccccc
Confidence 222221 111 011334555666653 579999999996532 3333444444431
Q ss_pred ------------cccCCcEEEEEecCCCC----CCChhhhCCCCcceecccCC
Q 002169 779 ------------LHQRVNVTVIAATNRPD----KIDPALLRPGRFDRLLYVGP 815 (957)
Q Consensus 779 ------------~~~~~~v~VI~aTN~~~----~id~aLlr~gRfd~~i~~~~ 815 (957)
+.-..++.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 22345899999999988 78999999 984 555543
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-09 Score=118.49 Aligned_cols=148 Identities=18% Similarity=0.302 Sum_probs=106.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|+|||++|+++|+.+.. .++.+...+- ++ .-.-..+|.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 45667999999999999999999988643 2222222100 00 113456777776
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +...|++|||+|.+ .....|.||..|+. +..++++|++|+.++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 6543 44579999999977 45677899999995 34689999999999999999999 884
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
.+.|++|+.++..+.+...... ..+.+...++..+.|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 6899999999888877755321 223344566677777
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-09 Score=129.27 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|+||+|+|||||+++|++..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999865
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=117.74 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc----cccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP----EVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~----~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+.+|+|+||||||||++|+++|..++.+|+.+++. ++.+...+.....-..++... ....+|+|||++.+.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p- 194 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIP- 194 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCH-
Confidence 466899999999999999999999999999998852 111100000011111222222 2356999999987743
Q ss_pred CcCCCchHHHHHHHHHHHHhhc---------cccCCCeEEEEecCCC-----------CCchhhhhCCCCcceeeeecCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDG---------VCRTDGVLVIAATNRP-----------DSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~---------l~~~~~v~vI~ttN~~-----------~~ld~al~r~gRfd~~I~i~~P 463 (957)
.+...|...++. +..+.++.+|+|+|++ ..++++++. ||. .|+++.|
T Consensus 195 ----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 195 ----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 233345555542 2335688999999983 467899998 995 4889998
Q ss_pred CH
Q 002169 464 SP 465 (957)
Q Consensus 464 ~~ 465 (957)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-09 Score=115.65 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=48.4
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcccc
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSK 719 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~~ 719 (957)
-+.++||.++++..--.+++.. -+.-..+++||.||||||||.+|-+||+++| .||+.++++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk--------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIK--------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHH--------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred cccccChHHHHHHHHHHHHHHh--------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 4678999999987765554321 1233467899999999999999999999997 79999999888554
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=111.15 Aligned_cols=188 Identities=17% Similarity=0.292 Sum_probs=116.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCC-cEEEE--eCCCc-----c----cc----cccchH----HHHHHHH-HHHHhCCC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGL-NFLAV--KGPEL-----F----SK----WVGESE----KAVRSLF-AKARANAP 740 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~-~~i~v--~~~~l-----~----~~----~vg~~~----~~ir~~f-~~A~~~~p 740 (957)
-++|+||+|+||||+++.+++++.. .++.. ....+ + .. ..+... ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 22211 11111 0 00 011111 1122222 23345677
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-c-CCcEEEEEecCCCCC---C-C---hhhhCCCCcceec
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-Q-RVNVTVIAATNRPDK---I-D---PALLRPGRFDRLL 811 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~-~~~v~VI~aTN~~~~---i-d---~aLlr~gRfd~~i 811 (957)
.+|+|||++.+.. ..+..+ ..+-... . ...+.|+++ ..++. + + ..+.+ |+...+
T Consensus 125 ~vliiDe~~~l~~-------------~~~~~l-~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 125 ALLVVDEAQNLTP-------------ELLEEL-RMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred eEEEEECcccCCH-------------HHHHHH-HHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeee
Confidence 8999999997631 112222 2222211 1 222333333 33332 1 1 23444 777788
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCC-----CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 812 YVGPPNETDREEIFRIHLRKIPC-----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 812 ~~~~P~~~er~~Il~~~l~~~~~-----~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.+++.+.++..+++...+...+. -.+..++.+.+.+.|+ .+.+..+|+.+...|..+. ...|+.++++.++.
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~--~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE--KREIGGEEVREVIA 264 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Confidence 99999999999999988875442 1234577888999996 5669999999999988875 56899999999988
Q ss_pred hhC
Q 002169 887 HVQ 889 (957)
Q Consensus 887 ~~~ 889 (957)
.++
T Consensus 265 ~~~ 267 (269)
T TIGR03015 265 EID 267 (269)
T ss_pred Hhh
Confidence 754
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=127.16 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46678899999999999999999999998764
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-10 Score=109.11 Aligned_cols=109 Identities=30% Similarity=0.445 Sum_probs=72.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc------cccc---chHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------KWVG---ESEKAVRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------~~vg---~~~~~ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
+++|+||||||||++|+.+|..++.+++.+.++.... .|.- .....-..+...++ .++|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 4899999999999999999999999999998865422 2211 00000000111111 4679999999954
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCC------cEEEEEecCCCC----CCChhhhCCCCc
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRV------NVTVIAATNRPD----KIDPALLRPGRF 807 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~------~v~VI~aTN~~~----~id~aLlr~gRf 807 (957)
...+++.|+..++... ... +..+|+++|..+ .+++++++ ||
T Consensus 78 ------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 4667777777777531 011 389999999998 89999999 87
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=131.31 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++.. .... +...|..+....+..||++||+.+.+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~---------~~~~---l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVE---------QRLA---VAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHH---------HHHH---HHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 667888888999999999999765432 2233 33333333333366889999987653
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=114.12 Aligned_cols=172 Identities=14% Similarity=0.219 Sum_probs=118.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------cEEEEecccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------NLFTVNGPEV 365 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------~~i~i~~~~l 365 (957)
+|+++.|.+.+++.|...+... ..+..+||+||+|+|||++|+++|+.+-+ .+..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 3678999999999988885322 23456799999999999999999987633 12223221
Q ss_pred cccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 366 VSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.+..+ .-..++.+.+.+. .....|++||++|.+. ....+.|+..+++ ...++++|++|+.+
T Consensus 69 ~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEe--pp~~t~~il~~~~~ 133 (313)
T PRK05564 69 NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEE--PPKGVFIILLCENL 133 (313)
T ss_pred cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEeCCh
Confidence 01111 1223555555332 2345799999998873 2345678899987 45677888888889
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
+.+.|.+++ |. ..++|..|+.++....+..... .+++..++.++..+.|-.+
T Consensus 134 ~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 134 EQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred HhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 999999998 65 3589999999988777765443 3356667777777766444
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-10 Score=113.90 Aligned_cols=136 Identities=26% Similarity=0.425 Sum_probs=88.4
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc-----
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----- 719 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----- 719 (957)
|+|.+...+.+.+.+... ...+..|||+|++||||+++|++|.... +.||+.|+++.+-..
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 456666666666655431 2345789999999999999999998876 469999999876332
Q ss_pred cccch-------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 720 WVGES-------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 720 ~vg~~-------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
..|.. ......+|+.|..+ +||||||+.| ...++..|+..|+.-. ...
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccc
Confidence 11211 11124788898888 9999999976 4567778888887421 123
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceeccc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYV 813 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~ 813 (957)
++.||++|+.+-. .+...|+|...+|+
T Consensus 134 ~~RiI~st~~~l~---~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 134 DVRIIASTSKDLE---ELVEQGRFREDLYY 160 (168)
T ss_dssp -EEEEEEESS-HH---HHHHTTSS-HHHHH
T ss_pred cceEEeecCcCHH---HHHHcCCChHHHHH
Confidence 7999999995432 45556888765554
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5e-09 Score=126.00 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46778899999999999999999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=125.25 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778899999999999999999999998753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-09 Score=127.28 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||+++|++..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678899999999999999999999999875
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=127.07 Aligned_cols=255 Identities=22% Similarity=0.292 Sum_probs=147.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV- 721 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v- 721 (957)
.+++|.....+.+.+.+.. + ......++++|++||||+++|+++.... +.+|+.+++..+...++
T Consensus 139 ~~lig~s~~~~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK----------I-APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred cceeecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 3455665555555554432 1 1234669999999999999999998765 46899999987633211
Q ss_pred ----cc----h---HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------c
Q 002169 722 ----GE----S---EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 781 (957)
Q Consensus 722 ----g~----~---~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~ 781 (957)
|. . .......|..|.++ +||||||+.+ ...++..|+..++... .
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~g---tl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 208 SELFGYEKGAFTGAVKQTLGKIEYAHGG---TLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHhcCCCCCCcCCCccCCCCceeECCCC---EEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 10 0 01111233444433 9999999976 3456667777776421 1
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHHH----HHHHHH----hcCCCC----CcccHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHL----RKIPCS----SDVNIRE 842 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~~----Il~~~l----~~~~~~----~~~~l~~ 842 (957)
..++.+|++|+..-. .+...|+|.. .+.+..|...+|.+ +++.++ .+++.. ....+..
T Consensus 272 ~~~~rii~~~~~~l~---~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLK---RMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHH---HHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 136889999986522 2222233332 34455666666653 333333 322221 1223444
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh--hCCCchHHHHHHHHHHHHHhcCchhhhhccccc
Q 002169 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH--VQPSEIHSYKELSAKFQRLVHSNAEADESGYQL 920 (957)
Q Consensus 843 la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~--~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~ 920 (957)
|.....--+.+++++++++|+..+. ...|+.+++...... ..+.. ..+....+.+++.++........++..
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~~-----~~~i~~~~l~~~~~~~~~~~~~-~~l~~~~~~~E~~~i~~al~~~~gn~~ 422 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMAE-----GNQITAEDLGLDARERAETPLE-VNLREVRERAEREAVRKAIARVDGNIA 422 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHHcCCccccccccccc-cCHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4444433368999999999887542 345666665310000 01111 022233345677777777777777777
Q ss_pred ccchhhh---hhhhhccCC
Q 002169 921 RPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 921 ~~~~~~g---~~L~~~~k~ 936 (957)
+.++..| .+||.++|.
T Consensus 423 ~aA~~Lgisr~tl~rkl~~ 441 (445)
T TIGR02915 423 RAAELLGITRPTLYDLMKK 441 (445)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 7777776 789999875
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=108.23 Aligned_cols=190 Identities=20% Similarity=0.251 Sum_probs=124.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc--------------c-ccc-hHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------------W-VGE-SEKAVRSLF 732 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~--------------~-vg~-~~~~ir~~f 732 (957)
....++||+|++|.|||++++.++... ..|++.+.++.--+. + ... ..+....++
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~ 138 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVL 138 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHH
Confidence 345679999999999999999998654 247777776543111 1 011 122223445
Q ss_pred HHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC----CCCChhhhCCCCcc
Q 002169 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP----DKIDPALLRPGRFD 808 (957)
Q Consensus 733 ~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~----~~id~aLlr~gRfd 808 (957)
...+..++.+|+|||+|.++... .+-..++++.|..+...-++-+|++.... -.-|+.+.+ ||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~ 206 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGS----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE 206 (302)
T ss_pred HHHHHcCCcEEEeechHHHhccc----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC
Confidence 56666778899999999976432 12233455555555444455566554321 224788888 996
Q ss_pred eecccCCCCHH-HHHHHHHHHHhcCCCCCcc--c----HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 002169 809 RLLYVGPPNET-DREEIFRIHLRKIPCSSDV--N----IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHL 881 (957)
Q Consensus 809 ~~i~~~~P~~~-er~~Il~~~l~~~~~~~~~--~----l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~ 881 (957)
.+.+|.-... +...++..+-..+++.... . ...+-..++|. .+++..+++.|+..|++.. ...||.+.+
T Consensus 207 -~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG--~E~It~~~l 282 (302)
T PF05621_consen 207 -PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSG--EERITREIL 282 (302)
T ss_pred -CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcC--CceecHHHH
Confidence 6666666553 5667777777777665322 2 24556678884 5589999999999999886 678888887
Q ss_pred HH
Q 002169 882 KT 883 (957)
Q Consensus 882 ~~ 883 (957)
..
T Consensus 283 ~~ 284 (302)
T PF05621_consen 283 DK 284 (302)
T ss_pred hh
Confidence 64
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-09 Score=126.17 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667889999999999999999999999765
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=125.71 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++..
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 3667889999999999999999999999765
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-09 Score=123.23 Aligned_cols=234 Identities=22% Similarity=0.307 Sum_probs=142.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc-----cchH-------HHHHHHHHHHHhCCCeEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV-----GESE-------KAVRSLFAKARANAPSII 743 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v-----g~~~-------~~ir~~f~~A~~~~p~IL 743 (957)
....++++|++||||+++|+++...+ +.+|+.+++..+...+. |... ......+..|.. .+|
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---gtl 241 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANE---GTL 241 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCC---CEE
Confidence 34569999999999999999998764 57999999987633211 1000 000123344433 399
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCCCChhhhCCCCcce-----
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR----- 809 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~----- 809 (957)
|||||+.+ ...++..|+..++... ...++.||++||..-. .+.+.|+|..
T Consensus 242 ~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 242 LLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYR 305 (457)
T ss_pred EEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHH
Confidence 99999976 3445667777776421 1135889999986532 4445566654
Q ss_pred --ecccCCCCHHHHHH----HHHHHHhc----CCCC-Cccc---HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 810 --LLYVGPPNETDREE----IFRIHLRK----IPCS-SDVN---IRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 810 --~i~~~~P~~~er~~----Il~~~l~~----~~~~-~~~~---l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+.+..|...+|.+ +++.++.+ .+.. .... +..|.....--+.+++++++++|+..+ +...
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~-----~~~~ 380 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN-----SGPI 380 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC-----CCCc
Confidence 34456677666542 33333332 2211 1222 334444433336899999999988654 2446
Q ss_pred CCHHHHHHHHHhhC--C--C-----chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 876 ITMQHLKTAIRHVQ--P--S-----EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 876 It~~d~~~al~~~~--p--~-----~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
|+.+|+...+.... + . ....+....+.+++.++........++..+.++..| .+||.++|.
T Consensus 381 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~~aA~~LGisr~tL~rkl~~ 453 (457)
T PRK11361 381 IFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQE 453 (457)
T ss_pred ccHHHChHhhhcccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 77778765442110 0 0 001233334567777777777777778888877777 889999875
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=123.39 Aligned_cols=225 Identities=12% Similarity=0.150 Sum_probs=132.8
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE-EeCCC-
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA-VKGPE- 715 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~-v~~~~- 715 (957)
....+..+++++|+++.++.++.++... .++..+.+-++|+|||||||||+++++|++++..++. ++...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3456778899999999999888776431 1122334459999999999999999999998876544 11110
Q ss_pred -----c----------ccccccchHHHHHHHHHHHHh----------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 716 -----L----------FSKWVGESEKAVRSLFAKARA----------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 716 -----l----------~~~~vg~~~~~ir~~f~~A~~----------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
. +..+ ......++.++..|.. ....||||||++.+... ....+.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------~~~~lq 216 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------DTRALH 216 (637)
T ss_pred cccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----------hHHHHH
Confidence 0 0011 1233445666666642 34579999999876421 112333
Q ss_pred HHHH-HHhccccCCcEEEEEecCC-CC--------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC
Q 002169 771 QLLV-ELDGLHQRVNVTVIAATNR-PD--------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC 834 (957)
Q Consensus 771 ~LL~-~ld~~~~~~~v~VI~aTN~-~~--------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~ 834 (957)
.+|. ... ....+.+|++++. +. .+.++++...|+ .+|.|.+.......+.|+..+.....
T Consensus 217 ~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 217 EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 4444 221 1234445554442 11 134677753354 37899999999977777777754321
Q ss_pred --C------CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-----hcCCCCCCHHHHHHHHHhhC
Q 002169 835 --S------SDVNIRELACLSEGCTGADISLICREAAISAIEE-----NLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 835 --~------~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~-----~~~~~~It~~d~~~al~~~~ 889 (957)
. ....+..++....| |++.+++..-..+... ......++..|...+..+..
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~ 356 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGK 356 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCC
Confidence 1 12345666666666 8888877554443322 11233566666665555443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=126.84 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999865
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9e-09 Score=122.99 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++..
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677889999999999999999999999764
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=114.43 Aligned_cols=177 Identities=22% Similarity=0.306 Sum_probs=118.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE-------------EE
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL-------------FT 359 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~-------------i~ 359 (957)
.++++|.|.+..++.|.+.+... +.+..+||+||+|+||+++|.++|+.+-+.- ..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~ 84 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA 84 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 45678999999999999885432 3355699999999999999999998762210 00
Q ss_pred Ee--c-----------ccccccc-----cc------hhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchH
Q 002169 360 VN--G-----------PEVVSQN-----YG------ESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEEL 411 (957)
Q Consensus 360 i~--~-----------~~l~~~~-----~g------e~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~ 411 (957)
+. | +++.--. .+ -.-..+|.+.+.+. ...+.|++|||+|.+.
T Consensus 85 ~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~---------- 154 (365)
T PRK07471 85 IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN---------- 154 (365)
T ss_pred CCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC----------
Confidence 00 0 0110000 00 01223555554332 3457899999999873
Q ss_pred HHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHH
Q 002169 412 SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 491 (957)
Q Consensus 412 ~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~L 491 (957)
....+.|+..+++. ..++++|++|+.++.+.+.+++ |+ ..+.++.|+.++..+++..... ...+..+..+
T Consensus 155 -~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~----~~~~~~~~~l 224 (365)
T PRK07471 155 -ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGP----DLPDDPRAAL 224 (365)
T ss_pred -HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcc----cCCHHHHHHH
Confidence 34556788888763 4567888999999999999988 76 4589999999999888876532 1233334566
Q ss_pred HHHcCCCcH
Q 002169 492 SMATHGFVG 500 (957)
Q Consensus 492 a~~t~g~~g 500 (957)
+..+.|-.+
T Consensus 225 ~~~s~Gsp~ 233 (365)
T PRK07471 225 AALAEGSVG 233 (365)
T ss_pred HHHcCCCHH
Confidence 666666544
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=115.16 Aligned_cols=194 Identities=16% Similarity=0.251 Sum_probs=131.5
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
....++||||.|.|||.|++|++++.. ..++.+...+++..++......-.+-|++-. +-.+++||+|+.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 456699999999999999999998762 3456666655554444332222233455444 345999999998854
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcce--ecccCCCCHHHHHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFDR--LLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd~--~i~~~~P~~~er~~Il~~~ 828 (957)
. ++...++...+..+...++.+|+.+-..|.. +.+.|.+ ||.. .+.+.+|+.+.|..|++..
T Consensus 190 k-----------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 190 K-----------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred C-----------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 3 2234455555555555555455554455554 4688888 8754 6778999999999999998
Q ss_pred HhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 829 LRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 829 l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
....++.- +.-...+|..... +.+++..+++.....+.... ..||...+.++++.....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~---~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK---RAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC---ccCcHHHHHHHHHHhhcc
Confidence 87766653 3346667777774 78999999988777776553 367777777776665443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.1e-09 Score=123.16 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667889999999999999999999999765
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-09 Score=128.19 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++. ....+++..|..+....+..||++||+.+.+
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~------------~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v 527 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDV------------SIRGQIINLLLDLQRDFGIAYLFISHDMAVV 527 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 66677888889999999999866433 3334455555544334467899999987653
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=125.99 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=118.9
Q ss_pred CCeEEEEc--CCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhcc------CCeEEEEc
Q 002169 329 TKGVLLHG--PPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS------APAVVFID 395 (957)
Q Consensus 329 ~~~vLL~G--ppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~------~p~IL~ID 395 (957)
+-+-+..| |++.||||+|+++|+++ +.+++++|+++-.+. ..++.+++.+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33445568 99999999999999997 567999999885332 2455555443322 23699999
Q ss_pred CccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHH
Q 002169 396 ELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHAL 475 (957)
Q Consensus 396 EiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~ 475 (957)
|+|.+.. ...+.|+..|+.. .+++.+|++||.+..+.+++++ |+ ..+.|..|+.++....++..
T Consensus 638 EaD~Lt~-----------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccCCH-----------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9999842 3456788999874 4578999999999999999998 75 45899999999999999998
Q ss_pred HcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 476 LSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 476 l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.+.+..+++..+..++..++|-...-|
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 8877777889999999999888544333
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.1e-09 Score=121.07 Aligned_cols=233 Identities=18% Similarity=0.261 Sum_probs=143.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccccc-----ch-------HHHHHHHHHHHHhCCCeEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVG-----ES-------EKAVRSLFAKARANAPSIIF 744 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg-----~~-------~~~ir~~f~~A~~~~p~ILf 744 (957)
...++++|++|||||++|+++.... +.+|+.+++..+-..... .. .......++.|.. .+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG---GTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCC---CEEE
Confidence 4569999999999999999998875 479999999876322111 00 0001112333333 3999
Q ss_pred EeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCCCChhhhCCCCcce------
Q 002169 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR------ 809 (957)
Q Consensus 745 iDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~------ 809 (957)
|||||.+ ....+..|+..++... ...++.+|++|+.. +... ...|+|..
T Consensus 234 l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~-~~~~~f~~~l~~~l 297 (444)
T PRK15115 234 LDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKA-MARGEFREDLYYRL 297 (444)
T ss_pred EEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHH-HHcCCccHHHHHhh
Confidence 9999976 3445566777776421 11268899999854 3333 33466643
Q ss_pred -ecccCCCCHHHHH----HHHHHHHhc----CCC----CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 810 -LLYVGPPNETDRE----EIFRIHLRK----IPC----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 810 -~i~~~~P~~~er~----~Il~~~l~~----~~~----~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
.+.+..|...+|. .+++.++.+ .+. .....+..|......-+.++++++++.|+..+ +...|
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~-----~~~~i 372 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT-----SSPVI 372 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC-----CCCcc
Confidence 2334566666664 233444432 221 12233455555553337899999999887653 24467
Q ss_pred CHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCCc
Q 002169 877 TMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 877 t~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
+.+++...+... +.....+....+.+++.++........++..+.++..| .+||.++|..
T Consensus 373 ~~~~l~~~~~~~-~~~~~~~~~~~~~~E~~~i~~al~~~~gn~~~aA~~Lgisr~tL~rkl~~~ 435 (444)
T PRK15115 373 SDALVEQALEGE-NTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 (444)
T ss_pred Chhhhhhhhccc-ccccccHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 777776544311 11001122223567788888888888888888888887 8899999863
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-09 Score=124.23 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3667889999999999999999999999974
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-09 Score=123.12 Aligned_cols=256 Identities=20% Similarity=0.314 Sum_probs=152.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV- 721 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v- 721 (957)
.+++|.....+.+.+.+.. . ......+++.|++|||||++|++|.... +.+|+.++|..+-..+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~----------~-~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~ 206 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGR----------L-SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIE 206 (469)
T ss_pred ccceecCHHHHHHHHHHHH----------H-hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHH
Confidence 4566766666555554431 1 1335569999999999999999999876 46999999987632211
Q ss_pred ----cchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------c
Q 002169 722 ----GESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 781 (957)
Q Consensus 722 ----g~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~ 781 (957)
|... ......|+.|..+ .|||||++.+ ....+..|+..++... .
T Consensus 207 ~~lfg~~~g~~~~~~~~~~g~~~~a~~G---tl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 207 SELFGHEKGAFTGANTIRQGRFEQADGG---TLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHhcCCCCCCCCCCCcCCCCCeeECCCC---EEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1000 0001123344333 8999999976 3455567777776421 1
Q ss_pred CCcEEEEEecCCCC-------CCChhhhCCCCcceecccCCCCHHHHH----HHHHHHHh----cCCCC----CcccHHH
Q 002169 782 RVNVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDRE----EIFRIHLR----KIPCS----SDVNIRE 842 (957)
Q Consensus 782 ~~~v~VI~aTN~~~-------~id~aLlr~gRfd~~i~~~~P~~~er~----~Il~~~l~----~~~~~----~~~~l~~ 842 (957)
..++.+|++|+..- .+.+.|.. ||. .+.+..|...+|. .+++.++. +++.. ....+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23678999998642 23344444 442 2344445554443 34444443 22221 1222444
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-C--------C-----------------chHHH
Q 002169 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ-P--------S-----------------EIHSY 896 (957)
Q Consensus 843 la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~-p--------~-----------------~~~~y 896 (957)
|.....--+.+++++++++++..+- ...|+.+|+...+.... + . ....+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 422 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMAA-----GQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHHCcHhhhccccccccccccccccccccccccccccccccchhh
Confidence 4444433368999999999887652 34567777653332110 0 0 01123
Q ss_pred HHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 897 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
....+.+++.++........++..+.++..| .+||.++|.
T Consensus 423 ~~~l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr~tL~rkl~~ 465 (469)
T PRK10923 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3344667888888888888888888888887 889999875
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-09 Score=106.03 Aligned_cols=176 Identities=17% Similarity=0.217 Sum_probs=116.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC----cEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV----NLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~----~~i~i~~~~l~ 366 (957)
+..+.+|+|.++.++.+.-+..-. .-.+++|.|||||||||-+.++|+++ |. -+.++|+++-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 445789999999999988774222 23479999999999999999999876 42 35778877643
Q ss_pred ccccchhHHHHHHHHHHHhccC---CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSA---PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~---p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
+- .-...+++..-+.-.... -.|+++||+|++.. .....|...|+-+.. ...+..++|..+.
T Consensus 91 GI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----------gAQQAlRRtMEiyS~--ttRFalaCN~s~K 155 (333)
T KOG0991|consen 91 GI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----------GAQQALRRTMEIYSN--TTRFALACNQSEK 155 (333)
T ss_pred cc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----------HHHHHHHHHHHHHcc--cchhhhhhcchhh
Confidence 32 122333333323222222 25999999998853 233456666766544 3467888998888
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
|-+.+.+ |.. .+.+...+..+...-+....+......++..++.+.--.+|
T Consensus 156 IiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 156 IIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 8877777 442 25566667777666666666666666677777777665555
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-09 Score=118.57 Aligned_cols=135 Identities=24% Similarity=0.309 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc--ccchhHHHHH----HHHHHHhc-cCC---eEEEEcC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQALH----EVFDSASQ-SAP---AVVFIDE 396 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~--~~ge~e~~i~----~vf~~a~~-~~p---~IL~IDE 396 (957)
..++++||.||||||||++|+.+|..++.+|+.|.|..-... -.|....... ..|..... .-. +|+++||
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DE 120 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDE 120 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEec
Confidence 347899999999999999999999999999999998643221 1122111111 00100000 001 4999999
Q ss_pred ccccccCCcCCCchHHHHHHHHHHHHhhc----------cccCCCeEEEEecCC-----CCCchhhhhCCCCcceeeeec
Q 002169 397 LDAIAPARKDGGEELSQRMVATLLNLMDG----------VCRTDGVLVIAATNR-----PDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 397 iD~l~~~~~~~~~~~~~~i~~~Ll~~ld~----------l~~~~~v~vI~ttN~-----~~~ld~al~r~gRfd~~I~i~ 461 (957)
|+... ..+.+.|+..|+. +.-...+++|+|.|+ ...+++++++ ||...+.++
T Consensus 121 Inra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 121 INRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred cccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 98763 3566778888877 223356888888894 4468899999 997779999
Q ss_pred CCCH-HHHHHHHHH
Q 002169 462 VPSP-AQRLEILHA 474 (957)
Q Consensus 462 ~P~~-~~r~~Il~~ 474 (957)
+|+. .+...++..
T Consensus 188 yp~~~~e~~~i~~~ 201 (329)
T COG0714 188 YPDSEEEERIILAR 201 (329)
T ss_pred CCCchHHHHHHHHh
Confidence 9944 444444443
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=104.19 Aligned_cols=128 Identities=22% Similarity=0.305 Sum_probs=80.0
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-------------CCCCChhhhCCCC
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-------------PDKIDPALLRPGR 806 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-------------~~~id~aLlr~gR 806 (957)
|.+|||||+|.|- -+.+.-|-..++. .---+||+|||+ |.-+.+.|+. |
T Consensus 297 PGVLFIDEVhMLD-------------iEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--R 358 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-------------IECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--R 358 (456)
T ss_pred CcceEeeehhhhh-------------hHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--h
Confidence 7799999999661 2233333334442 223467888885 4457888887 7
Q ss_pred cceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 807 FDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 807 fd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+ .+|..-+++.++.++|+++.....++.- +..+..|+.....-|-|-...++.-|.+.|... ....|..+|++++-
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~--g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN--GRKEISVEDVEEVT 435 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc--CCceeecccHHHHH
Confidence 6 4667778888999999998887666553 334566666555444444444444444555433 35578888887765
Q ss_pred Hhh
Q 002169 886 RHV 888 (957)
Q Consensus 886 ~~~ 888 (957)
.-+
T Consensus 436 ~Lf 438 (456)
T KOG1942|consen 436 ELF 438 (456)
T ss_pred HHH
Confidence 443
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-09 Score=121.45 Aligned_cols=255 Identities=21% Similarity=0.301 Sum_probs=148.5
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc--
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV-- 721 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v-- 721 (957)
.++|.....+.+.+.+... ......+++.|++||||+++|+++.... +.+|+.+++..+...+.
T Consensus 135 ~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 4566666655555544321 1234569999999999999999998775 56999999987632211
Q ss_pred ---cc----hHHH---HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cC
Q 002169 722 ---GE----SEKA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QR 782 (957)
Q Consensus 722 ---g~----~~~~---ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~ 782 (957)
|. +... ....+..|. ..+||||||+.+. ..++..|+..++... ..
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~ei~~l~-------------~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQAD---GGTLFLDEIGDMP-------------LDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEECC---CCeEEEEchhhCC-------------HHHHHHHHHHHhcCcEEECCCCceee
Confidence 10 0000 011233332 3489999999763 344566777776321 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcce---------ecccCCCC--HHHHHHHHHHHHhc----CCCC-Cccc---HHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDR---------LLYVGPPN--ETDREEIFRIHLRK----IPCS-SDVN---IREL 843 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~---------~i~~~~P~--~~er~~Il~~~l~~----~~~~-~~~~---l~~l 843 (957)
.++.||++|+..-. .+.+.|+|+. .|++|+.. .++...+++.++.. .+.. ..+. +..|
T Consensus 268 ~~~rii~~~~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQNLE---ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCCHH---HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 36789999986532 3333344431 44444443 23444455544432 2211 1222 3333
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-----C-C---------------------chHHH
Q 002169 844 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ-----P-S---------------------EIHSY 896 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~-----p-~---------------------~~~~y 896 (957)
.....--+.++|++++++|+..+. ...|+.+|+...+.... + . ....|
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMAS-----GDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQGLL 419 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHhchHHHhccccccccccccccccccccccccccccccccccchH
Confidence 333222257999999999887653 34577777765442210 0 0 01133
Q ss_pred HHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 897 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
....+.+++.++........++..+.++..| .+||.++|.
T Consensus 420 ~~~l~~~E~~~i~~al~~~~gn~~~aA~~Lgisr~tL~rkl~~ 462 (463)
T TIGR01818 420 DRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKE 462 (463)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4445677888888788777888888877777 889999875
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-09 Score=116.02 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|-.+++|....|.+|++||+.+-+ ...+..|++..+..+....+...++++|+..
T Consensus 434 RIAIARAliLkP~~i~LDEPTSAL------------D~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 434 RIAIARALILKPELILLDEPTSAL------------DRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred HHHHHHHHhcCCcEEEecCCchHh------------hHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 667888888999999999998654 3456667777777776777888999999654
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-08 Score=99.22 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=131.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 367 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~ 367 (957)
....+.+|.|++.+++.|.+--... ..-.|..+|||+|.-|||||+|+||+-++. +..+++|+..++..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F--------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQF--------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHH--------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 3456788999999999886653222 223467899999999999999999998776 55688888777643
Q ss_pred cccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~~~v~vI~ttN~~~~l 444 (957)
+-.+++..+.. ..-|||.|++-.= .++ .....|-..|++- .+..+|+|.+|+|+-+.+
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLSFe------~gd----~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLSFE------EGD----DAYKALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCCCC------CCc----hHHHHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 33445544433 2469999996311 111 1223455666663 345789999999996655
Q ss_pred hhhh--------------------hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHH----HHcCCCcH
Q 002169 445 EPAL--------------------RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS----MATHGFVG 500 (957)
Q Consensus 445 d~al--------------------~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La----~~t~g~~g 500 (957)
+..+ .=..||.-.+.|..++.++-..|++.+++..++.++++.++.-| ....|-+|
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSG 267 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSG 267 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence 5221 11128888899999999999999999999999888776554433 33455566
Q ss_pred HHHHHHHHH
Q 002169 501 ADLAALCNE 509 (957)
Q Consensus 501 aDi~~l~~~ 509 (957)
+--.+.++.
T Consensus 268 R~A~QF~~~ 276 (287)
T COG2607 268 RVAWQFIRD 276 (287)
T ss_pred HhHHHHHHH
Confidence 655554443
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.2e-09 Score=105.76 Aligned_cols=114 Identities=27% Similarity=0.440 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDA 399 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~----~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~ 399 (957)
|-..++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+. .....||||||+|.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457899999999999999999999995 9999999988761 111222222222211 11123999999999
Q ss_pred cccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEEEecCCCCC
Q 002169 400 IAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVIAATNRPDS 443 (957)
Q Consensus 400 l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI~ttN~~~~ 443 (957)
+.+....+.+.....+...|+..|++- -...++++|+|+|--..
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 988633333444557788899999763 12357899999987543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=107.66 Aligned_cols=189 Identities=19% Similarity=0.159 Sum_probs=123.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc--E----EEEeC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--F----LAVKG 713 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~--~----i~v~~ 713 (957)
.+.-.++|+++++++...+.+... ...-.++|+|||||||||+...+.|+.+..+ + ..++.
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~-------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSG-------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhcc-------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 345566788888888887776643 2333489999999999999999999988653 1 12222
Q ss_pred CCcccccccchHHHHHHHHHHHHh-------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARA-------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~-------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++-.+. ...+.--..|+.++. ..+..+++||+|++ +...+++|-+.++.. ..++.
T Consensus 102 Sd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek~--t~n~r 163 (360)
T KOG0990|consen 102 SDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEKY--TANTR 163 (360)
T ss_pred cCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHHh--ccceE
Confidence 221111 122233455666653 36789999999977 345566777777765 34677
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
++..+|.+..+-|++.. ||. .+.|.+.+.......+..+.+.-..... .-...+++...| |++..++.....
T Consensus 164 F~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~Lqs~ 236 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNYLQSI 236 (360)
T ss_pred EEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence 77888999999999998 885 5667667766666666666654433221 223445555555 777777654443
Q ss_pred H
Q 002169 866 A 866 (957)
Q Consensus 866 a 866 (957)
+
T Consensus 237 ~ 237 (360)
T KOG0990|consen 237 L 237 (360)
T ss_pred H
Confidence 3
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=118.98 Aligned_cols=163 Identities=19% Similarity=0.258 Sum_probs=98.6
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-EEEE---eCCCccccc--
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN-FLAV---KGPELFSKW-- 720 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~-~i~v---~~~~l~~~~-- 720 (957)
.|.|++.+|..+.-.+.... .+..-....++...++||+|+||||||++||+++..+... |+.. ++..+....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 47899998877765543210 0000011122334479999999999999999999987543 3321 111121111
Q ss_pred ---ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEE
Q 002169 721 ---VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVT 786 (957)
Q Consensus 721 ---vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~ 786 (957)
.|+.. .-...+..|..+ +++|||++.+ ....+..|+..|+... -..+..
T Consensus 283 ~~~~g~~~-~~~G~l~~A~~G---il~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 283 DPETREFT-LEGGALVLADNG---VCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred ccCcceEE-ecCccEEecCCC---EEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 11100 001123334344 9999999976 3445566777775421 124678
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcceeccc-CCCCHHHHHHHHHHHH
Q 002169 787 VIAATNRPD-------------KIDPALLRPGRFDRLLYV-GPPNETDREEIFRIHL 829 (957)
Q Consensus 787 VI~aTN~~~-------------~id~aLlr~gRfd~~i~~-~~P~~~er~~Il~~~l 829 (957)
||+|+|..+ .+++++++ |||-++.+ ..|+.+...+|.+..+
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 999999653 58999999 99976555 7788888888777644
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-09 Score=108.16 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCC----cEEEEeCCCcccccccchHHHHHHH-------HHHHHhCCCeEEEEeC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGL----NFLAVKGPELFSKWVGESEKAVRSL-------FAKARANAPSIIFFDE 747 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~----~~i~v~~~~l~~~~vg~~~~~ir~~-------f~~A~~~~p~ILfiDE 747 (957)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+ ....... ||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~g---VVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGG---VVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHT---EEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchh---hhhhHH
Confidence 4456999999999999999999999996 9999999888661 0011111111 1122223 999999
Q ss_pred CchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCC
Q 002169 748 IDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDK 796 (957)
Q Consensus 748 id~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~ 796 (957)
||...+.. ..........+++.||+.|++-. ...++++|+|+|--..
T Consensus 77 idKa~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 77 IDKAHPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GGGCSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred Hhhccccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99886641 11112233578899999998542 2347899999995543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=116.50 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc-------EEEEe----ccccccccc----chh--HHHHHHHHHHHhc--cC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN-------LFTVN----GPEVVSQNY----GES--EQALHEVFDSASQ--SA 388 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~-------~i~i~----~~~l~~~~~----ge~--e~~i~~vf~~a~~--~~ 388 (957)
.+++++|+||||||||++|+.+|..+... .+.+. ..+++..+. |-. ...+..+++.|.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 36789999999999999999999887431 12222 123332221 100 1123344455553 35
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh--------------------ccccCCCeEEEEecCCCC----Cc
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD--------------------GVCRTDGVLVIAATNRPD----SI 444 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld--------------------~l~~~~~v~vI~ttN~~~----~l 444 (957)
|.+|||||++..... ++...++.+|+ .+.-..++.||+|+|..| .+
T Consensus 273 ~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 273 KYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CcEEEEehhhccCHH----------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 899999999865322 23333444443 123346799999999988 79
Q ss_pred hhhhhCCCCcceeeeecC
Q 002169 445 EPALRRPGRLDREIEIAV 462 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~ 462 (957)
|.|++| ||.. |++.+
T Consensus 343 D~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 343 DYALRR--RFSF-IDIEP 357 (459)
T ss_pred cHHHHh--hhhe-EEecC
Confidence 999999 8844 56654
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=112.92 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=96.5
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-------CcEE---------
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------VNLF--------- 358 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-------~~~i--------- 358 (957)
|..|.|.++.|..|.-.+..| ...+++|.|+||+||||+++++++.+. .++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 567899998887764432111 246899999999999999999998772 1110
Q ss_pred EEecc-------------------cccc-----cccchh--HHHH--------HHHHHHHhccCCeEEEEcCccccccCC
Q 002169 359 TVNGP-------------------EVVS-----QNYGES--EQAL--------HEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 359 ~i~~~-------------------~l~~-----~~~ge~--e~~i--------~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
..+|. ++-. ...|.. +..+ ..++..| ...+||+||++.+.
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~--- 144 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE--- 144 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC---
Confidence 00011 1000 111111 0100 0111112 23599999999873
Q ss_pred cCCCchHHHHHHHHHHHHhhcc-----------ccCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCCH-HHHHHH
Q 002169 405 KDGGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPSP-AQRLEI 471 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l-----------~~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~~-~~r~~I 471 (957)
..+...|++.|+.- ....++++|+++|..+ .+++++.. ||...+.++.|.. ++|.+|
T Consensus 145 --------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 145 --------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred --------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 34566677777541 1124578888888765 68899998 9998899999876 888899
Q ss_pred HHHH
Q 002169 472 LHAL 475 (957)
Q Consensus 472 l~~~ 475 (957)
++..
T Consensus 215 L~~~ 218 (337)
T TIGR02030 215 VERR 218 (337)
T ss_pred HHhh
Confidence 8774
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=111.47 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=101.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEe---
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVN--- 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------~~i~i~--- 361 (957)
.+.|.+|.|+++.|..|.-.+..| ...+|||.|++|||||++||+++..+.. +|. ..
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 346789999999888877664332 2348999999999999999999877632 121 00
Q ss_pred ----ccccccc-------------------ccchhHHH------HHHHHHHH---------hccCCeEEEEcCccccccC
Q 002169 362 ----GPEVVSQ-------------------NYGESEQA------LHEVFDSA---------SQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 362 ----~~~l~~~-------------------~~ge~e~~------i~~vf~~a---------~~~~p~IL~IDEiD~l~~~ 403 (957)
+.++.+. ..|.++.. +...|... ......+||+||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 0000000 00111111 11111111 01123599999998874
Q ss_pred CcCCCchHHHHHHHHHHHHhhcc-----------ccCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCC-HHHHHH
Q 002169 404 RKDGGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPS-PAQRLE 470 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l-----------~~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~-~~~r~~ 470 (957)
..+...|++.|+.- ....++++|++.|..+ .+.+++.. ||...+.++.|+ .+.+.+
T Consensus 158 ---------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 158 ---------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred ---------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 34556677777541 1134578888888765 68899988 999899999997 699999
Q ss_pred HHHHHH
Q 002169 471 ILHALL 476 (957)
Q Consensus 471 Il~~~l 476 (957)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 998753
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=119.82 Aligned_cols=198 Identities=14% Similarity=0.225 Sum_probs=117.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE-Eec---cccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT-VNG---PEVV 366 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~-i~~---~~l~ 366 (957)
.+..++++.|.++.++.++.++... .++..+++.++|+|||||||||+++++|++++..+.+ ++. ....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~-------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ-------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc-------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 3456789999999999988886443 1344566779999999999999999999998865533 111 1100
Q ss_pred ccc------------cchhHHHHHHHHHHHh----------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 367 SQN------------YGESEQALHEVFDSAS----------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 367 ~~~------------~ge~e~~i~~vf~~a~----------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
..| +......++.++..+. .....||||||++.+.... .+.+..++..
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lLr~-- 221 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEILRW-- 221 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHHHH--
Confidence 000 0122234455555443 1246799999999875321 1123333331
Q ss_pred ccccCCCeEEEEecCC-CC--------C------chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCC------CC
Q 002169 425 GVCRTDGVLVIAATNR-PD--------S------IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEH------SL 483 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~-~~--------~------ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~------~l 483 (957)
.+...+.+.+|++++. +. . +.+++++..|. ..|.|.+.+..+....|+..+..... .+
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 1112344555555542 11 1 22566643344 35899999999977777776654321 11
Q ss_pred -ChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 484 -LDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 484 -~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
.+..++.++....| |++..+..-
T Consensus 301 p~~~~l~~I~~~s~G----DiRsAIn~L 324 (637)
T TIGR00602 301 PKKTSVELLCQGCSG----DIRSAINSL 324 (637)
T ss_pred CCHHHHHHHHHhCCC----hHHHHHHHH
Confidence 34677888876555 666655443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=113.07 Aligned_cols=148 Identities=26% Similarity=0.347 Sum_probs=100.2
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----------------------
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG----------------------- 354 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~----------------------- 354 (957)
+.|.+.....+...+... + +.+..+||+||||+|||++|.++|+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~---------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~ 72 (325)
T COG0470 3 LVPWQEAVKRLLVQALES---------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGN 72 (325)
T ss_pred cccchhHHHHHHHHHHhc---------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcC
Confidence 455565555555553211 1 1222599999999999999999999886
Q ss_pred -CcEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC
Q 002169 355 -VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 429 (957)
Q Consensus 355 -~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~ 429 (957)
..+++++.++..... -....++.+-+.... ....|++|||+|.+.. ...+.++..++. ..
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEe--p~ 137 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEE--PP 137 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhcc--CC
Confidence 467788877654432 233445555544332 3467999999999853 455678888877 45
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~ 473 (957)
.+..+|++||.++.+-+.+++ |.. .+.|..|+........+
T Consensus 138 ~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 138 KNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 678999999999999999998 653 37777655544443333
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=101.55 Aligned_cols=133 Identities=26% Similarity=0.377 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------------------
Q 002169 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------------------- 706 (957)
Q Consensus 650 G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------------------- 706 (957)
|++++++.|...+.. -+.+..+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888888888753 355677999999999999999999987521
Q ss_pred cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 707 NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 707 ~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
.++.++..+... .-....+|.+...+.. +...|++|||+|.+ .....++||..|+. +.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcC--CC
Confidence 344444332211 1134566766666543 34579999999966 56778899999995 45
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCC
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~ 815 (957)
.++.+|++|+.++.+-|.+++ |+ ..+.|++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 689999999999999999999 87 4666654
|
... |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=106.49 Aligned_cols=83 Identities=34% Similarity=0.581 Sum_probs=62.4
Q ss_pred CeEEEEcCccccccCCcCCCchHH-HHHHHHHHHHhhcc--------ccCCCeEEEEec----CCCCCchhhhhCCCCcc
Q 002169 389 PAVVFIDELDAIAPARKDGGEELS-QRMVATLLNLMDGV--------CRTDGVLVIAAT----NRPDSIEPALRRPGRLD 455 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~-~~i~~~Ll~~ld~l--------~~~~~v~vI~tt----N~~~~ld~al~r~gRfd 455 (957)
-.|+||||||.++.+.+.++.+.+ ..+...||-++++- -....+.||++. ..|.+|-|.|. |||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 359999999999987764443433 45666788888874 234557788765 45777888885 5999
Q ss_pred eeeeecCCCHHHHHHHHH
Q 002169 456 REIEIAVPSPAQRLEILH 473 (957)
Q Consensus 456 ~~I~i~~P~~~~r~~Il~ 473 (957)
-.+++...+.++...||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888874
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=98.48 Aligned_cols=196 Identities=20% Similarity=0.280 Sum_probs=136.9
Q ss_pred HHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEe
Q 002169 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVK 712 (957)
Q Consensus 636 ~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~ 712 (957)
.+...+.+.+.+++|.+.+++.+.+..+... .-.|..++||+|.-|||||+++||+-++. +..+|+|+
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 3455677899999999999999877654332 23467789999999999999999998876 56778887
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEE
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIA 789 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~ 789 (957)
..++. .+-.+++..+... .-|||.|+.- + +..+.....|-..|+|-. ...+|+|.+
T Consensus 121 k~dl~---------~Lp~l~~~Lr~~~~kFIlFcDDLS-F-----------e~gd~~yK~LKs~LeG~ve~rP~NVl~YA 179 (287)
T COG2607 121 KEDLA---------TLPDLVELLRARPEKFILFCDDLS-F-----------EEGDDAYKALKSALEGGVEGRPANVLFYA 179 (287)
T ss_pred HHHHh---------hHHHHHHHHhcCCceEEEEecCCC-C-----------CCCchHHHHHHHHhcCCcccCCCeEEEEE
Confidence 76653 2345566555433 3599999864 1 122333445666677642 345899999
Q ss_pred ecCCCCCCChhhh--------------------CCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cH--HH--HH
Q 002169 790 ATNRPDKIDPALL--------------------RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NI--RE--LA 844 (957)
Q Consensus 790 aTN~~~~id~aLl--------------------r~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l--~~--la 844 (957)
|+|+.+.+...+. =..||.-.+-|++++.++...|++.+++++++.... .+ ++ -|
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WA 259 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWA 259 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9998876632211 123999999999999999999999999999887532 22 22 23
Q ss_pred HHccCCcHHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICRE 861 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~e 861 (957)
..-.|-|||-....++.
T Consensus 260 t~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 260 TTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HhcCCCccHhHHHHHHH
Confidence 44456778776666653
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=120.46 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=44.7
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
+++|+..|++++|++++++.|..++.. .++++|+||||||||++|++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456788999999999999988776642 24799999999999999999997654
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-08 Score=109.29 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=103.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc------------------------EEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN------------------------LFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~------------------------~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||+|+|||++|+++|+.+-+. ++.+...+- ++. -.-..+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 35679999999999999999999877431 222221100 000 122355555554
Q ss_pred Hh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 AS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+. .....|++|||+|.+. ....+.|++.|++. .+++++|++|+.++.+.|.+++ |... +.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~ 161 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQQ-QA 161 (328)
T ss_pred HhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hcee-ee
Confidence 43 3446799999999884 34567899999883 4688999999999999999999 7744 89
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
|+.|+.++..+.+..... ...+.....++...+|-.+
T Consensus 162 ~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 162 CPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPL 198 (328)
T ss_pred CCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHH
Confidence 999999988877765431 1244455566666666544
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=122.04 Aligned_cols=191 Identities=21% Similarity=0.230 Sum_probs=118.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCcccccccchH--HHH--------HHHHHHHHhCCCeEEEEeCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSKWVGESE--KAV--------RSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~~~vg~~~--~~i--------r~~f~~A~~~~p~ILfiDEi 748 (957)
.|+||.|+||||||++|++|+..+.. +|+.+..........|... ..+ ...+.+|..+ +||+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~G---vL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRG---VLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCC---cEeccch
Confidence 46999999999999999999998754 6888875322222222210 000 1122333333 9999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC---CCChhhhCCCCcceecccC
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD---KIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~---~id~aLlr~gRfd~~i~~~ 814 (957)
+.+ ...+++.|+..|+.-. ...++.||+++|..+ .+.++|+. ||...+.+.
T Consensus 94 ~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 94 NLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 966 4567778888886421 123678999888765 68899999 998776664
Q ss_pred -CCCHHHHHHHHHHHHhcCC----CC--------------------CcccHHHHHHHc--cCCc-HHHHHHHHHHHHHHH
Q 002169 815 -PPNETDREEIFRIHLRKIP----CS--------------------SDVNIRELACLS--EGCT-GADISLICREAAISA 866 (957)
Q Consensus 815 -~P~~~er~~Il~~~l~~~~----~~--------------------~~~~l~~la~~t--~g~s-g~dl~~l~~eA~~~a 866 (957)
.|+.++|.+|++..+..+. .. .+..+..++..+ .|.+ .+-...+++-|...|
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 4566778898887653211 00 111122232222 1332 233334445444444
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..+. ...|+.+|+..++.-+.++
T Consensus 239 al~g--r~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 239 ALHG--RTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred HHhC--CCCCCHHHHHHHHHHHhhh
Confidence 4443 6789999999998776543
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-09 Score=102.26 Aligned_cols=104 Identities=26% Similarity=0.393 Sum_probs=60.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc------cccccccchhHH-----HHHHHHHHHhccCCeEEEEcCccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP------EVVSQNYGESEQ-----ALHEVFDSASQSAPAVVFIDELDA 399 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~------~l~~~~~ge~e~-----~i~~vf~~a~~~~p~IL~IDEiD~ 399 (957)
||||.|+||+|||++|+++|+.++..|..|.+. |+.+..+-..+. .-..+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 699999999999999999999999999888763 233322111110 111111 24999999976
Q ss_pred cccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEEEecCCCC-----CchhhhhCCCCc
Q 002169 400 IAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVIAATNRPD-----SIEPALRRPGRL 454 (957)
Q Consensus 400 l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI~ttN~~~-----~ld~al~r~gRf 454 (957)
. ..+..+.|++.|.+- .-...++||+|.|+.+ .++++++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 5 346677889988763 1234588999999876 67788887 77
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=115.57 Aligned_cols=210 Identities=21% Similarity=0.229 Sum_probs=127.8
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC----cEEE------EeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----NFLA------VKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----~~i~------v~~ 713 (957)
.+.++.|+..+++.+.- ......+++|+||||||||++++.+++.+.. ..+. +.+
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 56778888877765421 2345567999999999999999999976521 1111 111
Q ss_pred C-----Cc-----cc--------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 714 P-----EL-----FS--------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 714 ~-----~l-----~~--------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
. .+ .+ ..+|.....-...+..|..+ +||+||++.+ ...++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-------------~~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-------------ERRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-------------CHHHHHHHHHH
Confidence 0 01 00 01121111223567788777 9999999854 45677778887
Q ss_pred Hhccc-----------cCCcEEEEEecCCCC---------------------CCChhhhCCCCcceecccCCCCHHH---
Q 002169 776 LDGLH-----------QRVNVTVIAATNRPD---------------------KIDPALLRPGRFDRLLYVGPPNETD--- 820 (957)
Q Consensus 776 ld~~~-----------~~~~v~VI~aTN~~~---------------------~id~aLlr~gRfd~~i~~~~P~~~e--- 820 (957)
|+.-. ...++.+|+|+|... .+..+++. |||-.+.++.|+.++
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSK 395 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhc
Confidence 75422 134689999999753 46778998 999999998774321
Q ss_pred -------HHHHHH-------HH-HhcCCCCCccc-------------HH---HHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 821 -------REEIFR-------IH-LRKIPCSSDVN-------------IR---ELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 821 -------r~~Il~-------~~-l~~~~~~~~~~-------------l~---~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
...|-+ .. .++..+..... .. +-+....|.|.|....+++-|...|..+
T Consensus 396 ~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~ 475 (506)
T PRK09862 396 TVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADID 475 (506)
T ss_pred ccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 111111 00 00000011110 01 1122334678888888888888777666
Q ss_pred hcCCCCCCHHHHHHHHHhh
Q 002169 870 NLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 870 ~~~~~~It~~d~~~al~~~ 888 (957)
. ...|+.+|+.+|+.-.
T Consensus 476 g--~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 476 Q--SDIITRQHLQEAVSYR 492 (506)
T ss_pred C--CCCCCHHHHHHHHHhh
Confidence 5 6789999999998643
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-09 Score=124.69 Aligned_cols=225 Identities=23% Similarity=0.341 Sum_probs=144.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh--CCcEEEEeCCCc---------ccc----cccchHHHHHHHHHHHHhCCCeEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA--GLNFLAVKGPEL---------FSK----WVGESEKAVRSLFAKARANAPSIIF 744 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~--~~~~i~v~~~~l---------~~~----~vg~~~~~ir~~f~~A~~~~p~ILf 744 (957)
.-.+++.|.|||||-.+||+|...+ ..||+.+++..+ ++. +.|...+..+..+..|..+ .||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccH
Confidence 4569999999999999999997665 469999998644 322 2222335556677777777 999
Q ss_pred EeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc--------ccCCcEEEEEecCCCCCCChhhhCCCCcceeccc---
Q 002169 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYV--- 813 (957)
Q Consensus 745 iDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~--------~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~--- 813 (957)
+|||..| ...+++.||..|... ....++.||+|||++-. .|.+.|||.+-+|+
T Consensus 413 ldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~ 476 (606)
T COG3284 413 LDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLN 476 (606)
T ss_pred HHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhc
Confidence 9999855 456777888887642 23447899999998765 88899999886665
Q ss_pred ----CCCCHHHHH---HHHHHHHhcCC-CCCcccHHHH----HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 002169 814 ----GPPNETDRE---EIFRIHLRKIP-CSSDVNIREL----ACLSEGCTGADISLICREAAISAIEENLDASRITMQHL 881 (957)
Q Consensus 814 ----~~P~~~er~---~Il~~~l~~~~-~~~~~~l~~l----a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~ 881 (957)
.+|...+|. ..+..++.+.. ..-..+-+.+ ++.=.| +.+++.++++.++..+ +...|...|+
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~-----~~g~~~~~dl 550 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS-----DGGRIRVSDL 550 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC-----CCCeeEcccC
Confidence 466666554 34444443322 2122222222 333445 7899999999888665 3444555555
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 882 KTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 882 ~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
...+..-+.+. .+..++.-......+..+++...++-.| ++||+++|.
T Consensus 551 p~~l~~~~~~~-------~~~~~~~~l~~al~~~~~~is~aa~~lgi~R~T~yrklk~ 601 (606)
T COG3284 551 PPELLEEQATP-------REDIEKAALLAALQATNGNISEAARLLGISRSTLYRKLKR 601 (606)
T ss_pred CHHHHhhhccc-------ccchHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 54444322221 2223333333444555666666666665 789999886
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=110.64 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc-----chh-------HHHHHHHHHHHhccCCeE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY-----GES-------EQALHEVFDSASQSAPAV 391 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~-----ge~-------e~~i~~vf~~a~~~~p~I 391 (957)
....+|||+|++||||+++|++|.... +.+|+.++|..+..... |.. ...-...|+.|. ..+
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGt 96 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGT 96 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCE
Confidence 346789999999999999999998755 46899999987643211 000 000111244443 459
Q ss_pred EEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cCCCeEEEEecCCCC-------CchhhhhCCCCcc
Q 002169 392 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDGVLVIAATNRPD-------SIEPALRRPGRLD 455 (957)
Q Consensus 392 L~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~~~v~vI~ttN~~~-------~ld~al~r~gRfd 455 (957)
|||||++.+. ..+...|+..++.-. ...++.+|++|+..- .+.+.|.. |+.
T Consensus 97 L~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 97 LFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred EEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 9999999883 345566777775421 123578899987531 22333433 443
Q ss_pred eeeeecCCCHHHHHH----HHHHHHc----C--CC--CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 456 REIEIAVPSPAQRLE----ILHALLS----G--ME--HSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 456 ~~I~i~~P~~~~r~~----Il~~~l~----~--~~--~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+.|..|...+|.+ +++.++. + .. ..+++..++.|..+.-.-+.++|+++++.++..+
T Consensus 164 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 -FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred -chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 25667777776643 3333322 1 22 3578888888888765567788888888776543
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=105.14 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=103.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||.||.|+||+++|+++|+.+-. .++.+...+ ++ .-....+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHH
Confidence 45678999999999999999999987532 122232110 11 113556777666
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +.-.|++||++|.+ .....|.||..|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-Q 159 (325)
T ss_pred HHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-e
Confidence 6543 34479999999977 45677899999995 56689999999999999999999 87 5
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
.+.|++|+.++..+.+..... ........++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYG 195 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCC
Confidence 889999999888777765431 112223444555665
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=117.70 Aligned_cols=233 Identities=18% Similarity=0.253 Sum_probs=137.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccccc-----c----hH---HHHHHHHHHHHhCCCeEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVG-----E----SE---KAVRSLFAKARANAPSII 743 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg-----~----~~---~~ir~~f~~A~~~~p~IL 743 (957)
....++++|++||||+++|+++.... +.+|+.+++..+...+.. . .. ......+..| ...+|
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl 237 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTL 237 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEE
Confidence 34569999999999999999998665 579999999876332111 0 00 0001122333 24599
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCCCChhhhCCCCcce-----
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR----- 809 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~----- 809 (957)
|||||+.+. ...+..|+..++... ...++.+|++|+..-. .+..+|+|..
T Consensus 238 ~ldei~~l~-------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 238 FLDEIGDIS-------------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYYR 301 (441)
T ss_pred EEeccccCC-------------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHH
Confidence 999999773 344556777776421 1125788988876432 4445567654
Q ss_pred --ecccCCCCHHHHH----HHHHHHHhc----CCCC----CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 810 --LLYVGPPNETDRE----EIFRIHLRK----IPCS----SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 810 --~i~~~~P~~~er~----~Il~~~l~~----~~~~----~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+.+..|...+|. .+++.++.+ .+.. ....+..|.....--+.++++++++.|+..+ +...
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~-----~~~~ 376 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL-----TGEY 376 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC-----CCCc
Confidence 3445566666553 344444433 2211 1223344444442226799999999877653 2456
Q ss_pred CCHHHHHHHHHhhC-CC-chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 876 ITMQHLKTAIRHVQ-PS-EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 876 It~~d~~~al~~~~-p~-~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
|+.+++...+.... +. ....... .+.+++.++........++..+.++..| .+||.++|+
T Consensus 377 i~~~~l~~~~~~~~~~~~~~~~~~~-l~~~e~~~i~~~l~~~~gn~~~aa~~Lgisr~tl~rk~~~ 441 (441)
T PRK10365 377 ISERELPLAIASTPIPLGQSQDIQP-LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 (441)
T ss_pred cchHhCchhhcccccCcccccchhh-HHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHhhC
Confidence 77777765443211 11 0011112 2446666777777777777777777776 789999874
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=99.29 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=77.3
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC-------------CCCchhhhhCCCCcc
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-------------PDSIEPALRRPGRLD 455 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~-------------~~~ld~al~r~gRfd 455 (957)
|.||||||++.| +-.-...|...++. .-.-+||+++|+ |.-+++.+.. |+
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl- 359 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL- 359 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-
Confidence 889999998877 22333444444443 233478888887 4566777766 55
Q ss_pred eeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 456 REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 456 ~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
..|..-.+++++.++|++......++.+++..+..|+.....-+-+...+|+.-|...|-.
T Consensus 360 ~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~ 420 (456)
T KOG1942|consen 360 LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKT 420 (456)
T ss_pred eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHH
Confidence 2366777899999999999998888898999999998876665656555555555444433
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.3e-08 Score=107.37 Aligned_cols=179 Identities=21% Similarity=0.245 Sum_probs=119.3
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------EEEEeccc
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------LFTVNGPE 364 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------~i~i~~~~ 364 (957)
|++|.|.+.+++.++..+... +-+..+||+||+|+||+++|.++|..+-+. +...+-+|
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD 71 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD 71 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC
Confidence 678999999999999986433 235579999999999999999999876221 00111122
Q ss_pred ccccc-----cch--------------------hHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 365 VVSQN-----YGE--------------------SEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 365 l~~~~-----~ge--------------------~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
+.--+ .|. .-..++.+.+.+. .....|++||++|.+. ...
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~a 140 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EAA 140 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------HHH
Confidence 11000 010 0124556655443 2346799999998883 234
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT 495 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t 495 (957)
.+.|+..|++.. +.++|++|+.++.+.|.+++ |. ..+.|+.++.++..+++........ .+.+...++...
T Consensus 141 aNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~~a 211 (314)
T PRK07399 141 ANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLALA 211 (314)
T ss_pred HHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHHHc
Confidence 567999998853 45788888899999999999 65 4489999999999998887542211 122346667767
Q ss_pred CCCcHHHHH
Q 002169 496 HGFVGADLA 504 (957)
Q Consensus 496 ~g~~gaDi~ 504 (957)
.|-.+.-+.
T Consensus 212 ~Gs~~~al~ 220 (314)
T PRK07399 212 QGSPGAAIA 220 (314)
T ss_pred CCCHHHHHH
Confidence 765554443
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.5e-08 Score=114.97 Aligned_cols=193 Identities=22% Similarity=0.299 Sum_probs=119.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH-----------cCCcEEEEe
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD-----------SGVNLFTVN 361 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~-----------l~~~~i~i~ 361 (957)
..++++.|.+..++.+++.+... .....+|||+|++||||+++|+++... .+.+|+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 45778999999888888876433 123568999999999999999999887 356899999
Q ss_pred ccccccccc-----chhH--------HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-
Q 002169 362 GPEVVSQNY-----GESE--------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC- 427 (957)
Q Consensus 362 ~~~l~~~~~-----ge~e--------~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~- 427 (957)
|..+..... |..+ ..-..+|+.|.. ..||||||+.|. ..+...|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 987643211 1000 001124555543 489999999873 345566777776421
Q ss_pred --------cCCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC----CCCCCC
Q 002169 428 --------RTDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG----MEHSLL 484 (957)
Q Consensus 428 --------~~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~----~~~~l~ 484 (957)
..-++.+|++||.. +...+ ..|+|.. .+.+..|...+|.+ +++.++.+ ....++
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 11246789988763 22222 2334432 36777888777754 33334432 344445
Q ss_pred hHHH-------HHHHHHcCCCcHHHHHHHHHHHHH
Q 002169 485 DSEV-------EYLSMATHGFVGADLAALCNEAAL 512 (957)
Q Consensus 485 ~~~l-------~~La~~t~g~~gaDi~~l~~~A~~ 512 (957)
...+ +.|..+.-.-+.++|+++++.++.
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 4443 333333333456788888887765
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-09 Score=117.56 Aligned_cols=145 Identities=23% Similarity=0.365 Sum_probs=89.2
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---------Cc-EEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---------LN-FLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~-~i~v 711 (957)
...|.||.||+.+|+.+..+.. -.+++||+||||||||++|+-+...+- .. +..+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 3478999999999999877664 357899999999999999999875431 00 0111
Q ss_pred eCCCccc--------------------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHH
Q 002169 712 KGPELFS--------------------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 771 (957)
Q Consensus 712 ~~~~l~~--------------------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~ 771 (957)
.+ ++.. ..+|......-.-+..|..+ ||||||.-.+ .+.+++.
T Consensus 240 ~g-~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~G---VLFLDElpef-------------~~~iLe~ 302 (490)
T COG0606 240 AG-DLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNG---VLFLDELPEF-------------KRSILEA 302 (490)
T ss_pred cc-cccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCC---EEEeeccchh-------------hHHHHHH
Confidence 11 1100 00110000000112333334 9999998643 4577777
Q ss_pred HHHHHhcccc-----------CCcEEEEEecCCC-----------------------CCCChhhhCCCCcceecccCCCC
Q 002169 772 LLVELDGLHQ-----------RVNVTVIAATNRP-----------------------DKIDPALLRPGRFDRLLYVGPPN 817 (957)
Q Consensus 772 LL~~ld~~~~-----------~~~v~VI~aTN~~-----------------------~~id~aLlr~gRfd~~i~~~~P~ 817 (957)
|.+-|+.-.- ..++..|+|+|.. ..+...+++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 7777764311 1256677888742 124567777 999999998876
Q ss_pred HHH
Q 002169 818 ETD 820 (957)
Q Consensus 818 ~~e 820 (957)
..+
T Consensus 381 ~~e 383 (490)
T COG0606 381 AGE 383 (490)
T ss_pred HHH
Confidence 433
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=123.88 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
++.+.++..+.|+||+|+|||||++++++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467889999999999999999999999964
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=103.61 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=103.5
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC---------------------cEEEEe-CCCccc-c-cccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL---------------------NFLAVK-GPELFS-K-WVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~---------------------~~i~v~-~~~l~~-~-~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|+||+++|.++|..+-. +++.+. .++-.+ + ...-.-..+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 45667999999999999999999976522 122221 111000 0 00112456677776
Q ss_pred HHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+... .-.|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-Q 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-e
Confidence 65432 3369999999977 45667889999995 45588899999999999999999 87 4
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcH
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTG 852 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg 852 (957)
.+.|+.|+.++..+.+... +.. ..+...++..+.|..+
T Consensus 166 ~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 8889999988877776542 322 2234456677777443
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=106.44 Aligned_cols=191 Identities=18% Similarity=0.188 Sum_probs=119.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc---
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN--- 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~--- 369 (957)
+++.|-+...+.+.+.+... ...+.+|+|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 6 ~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred CccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHH
Confidence 56788888888777775443 1346789999999999999999998665 3589999998763211
Q ss_pred --cchh-------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------CCC
Q 002169 370 --YGES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDG 431 (957)
Q Consensus 370 --~ge~-------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~-------~~~ 431 (957)
+|.. .......|+.+. ...|||||+|.+. ..+...|+..++.-. . ..+
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHccccccccCCcccccCCchhccC---CCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 0100 000012233333 3589999999884 345566777775421 1 124
Q ss_pred eEEEEecCCC-------CCchhhhhCCCCcceeeeecCCCHHHHHH----HHHHHH----cCCC----CCCChHHHHHHH
Q 002169 432 VLVIAATNRP-------DSIEPALRRPGRLDREIEIAVPSPAQRLE----ILHALL----SGME----HSLLDSEVEYLS 492 (957)
Q Consensus 432 v~vI~ttN~~-------~~ld~al~r~gRfd~~I~i~~P~~~~r~~----Il~~~l----~~~~----~~l~~~~l~~La 492 (957)
+.+|++|+.. ..+.+.|.. ||. .+.|..|...+|.+ +++.++ .+++ ..+++..+..|.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 7888888753 123344444 443 25677777777744 333332 2222 246778888887
Q ss_pred HHcCCCcHHHHHHHHHHHHHH
Q 002169 493 MATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 493 ~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+.=.-+-++|+++++.|...
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHh
Confidence 776556678888888877553
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=101.63 Aligned_cols=176 Identities=16% Similarity=0.282 Sum_probs=105.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC-cEEE---Eecc----cccc---cccc-----hh-H---HHHHHHH-HHHhccC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGV-NLFT---VNGP----EVVS---QNYG-----ES-E---QALHEVF-DSASQSA 388 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~-~~i~---i~~~----~l~~---~~~g-----e~-e---~~i~~vf-~~a~~~~ 388 (957)
..++|+||+|+||||+++.++..+.. .+.. +++. ++.. ...| .. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998753 2221 1110 1000 0011 10 1 1122222 2233556
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCC---c----hhhhhCCCCcceeeee
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDS---I----EPALRRPGRLDREIEI 460 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~---l----d~al~r~gRfd~~I~i 460 (957)
+.+|+|||++.+.. .....|..+.+... ....+.|+++. .++. + ...+.+ |+...+++
T Consensus 124 ~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTP-----------ELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCH-----------HHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 78999999988732 11222222222111 12223344443 3221 1 123444 77777899
Q ss_pred cCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 461 AVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+..+.++..+++...+...+ ..+++..++.+++.+.|.... |..+|..+...+..+...
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~ 252 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKR 252 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCC
Confidence 99999999999998876543 357889999999999998654 999999998888765443
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=106.35 Aligned_cols=129 Identities=21% Similarity=0.359 Sum_probs=89.3
Q ss_pred cCCcHHHHHHHHHHHHhhhhh-hhh-hhcCCC-CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccchh
Q 002169 298 LGGLSKEYAILKDIIISSSVK-STL-SSLGLR-PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGES 373 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~-~~~-~~l~i~-~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge~ 373 (957)
+.|.+..|+.|.=.|-....+ ... .+-.+. ...+|||.||+|||||.||+.+|+.++.+|..-++..+.. .|+||.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 678888777665554333222 100 001111 2468999999999999999999999999999999888776 478876
Q ss_pred H-HHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhcc
Q 002169 374 E-QALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGV 426 (957)
Q Consensus 374 e-~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l 426 (957)
- ..+-.+++.|. .....|++|||||.++++..+.. +-....+...||.++++-
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4 44556666543 22356999999999998765443 123456778899999884
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-08 Score=111.92 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=128.0
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVV 366 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~ 366 (957)
...++|++|.|-.+...++.+.+.. .......|||+|.+||||..+|+++.+.. +.+|+.+||..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457889999999888777776422 23557789999999999999999999765 5689999996543
Q ss_pred ---------ccccchhHHH----HHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------
Q 002169 367 ---------SQNYGESEQA----LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV------- 426 (957)
Q Consensus 367 ---------~~~~ge~e~~----i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l------- 426 (957)
+...|..... -..+|+.|..+ -||+|||..+ ...+...||..+..-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 3222221111 23466666555 8999999665 456778888888752
Q ss_pred --ccCCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHHHH--------HHHHcCCC---CCCChH
Q 002169 427 --CRTDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLEIL--------HALLSGME---HSLLDS 486 (957)
Q Consensus 427 --~~~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~Il--------~~~l~~~~---~~l~~~ 486 (957)
...-.+.||+|||+. +..++ ..|+|.+ ++.+..|...+|.+=+ +.+..+++ ..+++.
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 112358999999973 33333 2355533 3566777777774322 22222222 235677
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHH
Q 002169 487 EVEYLSMATHGFVGADLAALCNEAAL 512 (957)
Q Consensus 487 ~l~~La~~t~g~~gaDi~~l~~~A~~ 512 (957)
.+..|..+.=.-+-++|++++..+..
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 77777766544456888888877643
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-09 Score=100.93 Aligned_cols=104 Identities=29% Similarity=0.444 Sum_probs=60.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC-Ccccc-ccc-----chHH----HHHHHHHHHHhCCCeEEEEeCCch
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGP-ELFSK-WVG-----ESEK----AVRSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~-~l~~~-~vg-----~~~~----~ir~~f~~A~~~~p~ILfiDEid~ 750 (957)
|+||.|+||+|||++|+++|+.++..|.+|.+. ++.-. ..| .... .-.-+| . .|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif----~---~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF----T---NILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-----S---SEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh----h---ceeeeccccc
Confidence 589999999999999999999999999999873 44221 011 0000 001112 1 3999999984
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHhcccc---------CCcEEEEEecCCCC-----CCChhhhCCCCc
Q 002169 751 LAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------RVNVTVIAATNRPD-----KIDPALLRPGRF 807 (957)
Q Consensus 751 l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~---------~~~v~VI~aTN~~~-----~id~aLlr~gRf 807 (957)
+..+++++||..|....- ....+||++-|..+ .+++|++. ||
T Consensus 74 -------------appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 -------------APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------------S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------------CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 467788899999875321 23578888889776 47888887 77
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=113.50 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=88.7
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEec-----ccccccc-
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNG-----PEVVSQN- 369 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~-----~~l~~~~- 369 (957)
+.|.+++++.+... +..+.+|||+||||||||++|++++...+. +|..+.+ .++++..
T Consensus 22 i~gre~vI~lll~a--------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLA--------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHH--------------HccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 56666665554444 245789999999999999999999987643 3333322 2333221
Q ss_pred cchhHHHHHHHHHHHhcc---CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--------cCCCeEEEEec
Q 002169 370 YGESEQALHEVFDSASQS---APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------RTDGVLVIAAT 438 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~---~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--------~~~~v~vI~tt 438 (957)
+... .-..-|.....+ ...+||+|||..+ .....+.|+..|.+-. .-.-.+++++|
T Consensus 88 i~~~--~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 88 IQAL--KDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred Hhhh--hhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 0000 001122221111 2349999999755 3456778888884421 11123556666
Q ss_pred CCCCC---chhhhhCCCCcceeeeecCCC-HHHHHHHHHHH
Q 002169 439 NRPDS---IEPALRRPGRLDREIEIAVPS-PAQRLEILHAL 475 (957)
Q Consensus 439 N~~~~---ld~al~r~gRfd~~I~i~~P~-~~~r~~Il~~~ 475 (957)
|...+ ..+++.. ||-..+.+++|+ .++..+|+...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 75432 3347777 897788999997 45667888753
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-08 Score=108.77 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=97.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCc-------------------------EEEEeCCCcc--------------
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLN-------------------------FLAVKGPELF-------------- 717 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~-------------------------~i~v~~~~l~-------------- 717 (957)
-+.+.++||+||+|+||+++|+++|+.+... ++.+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 3667889999999999999999999876331 2222111000
Q ss_pred ----cc----c-ccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc
Q 002169 718 ----SK----W-VGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 784 (957)
Q Consensus 718 ----~~----~-vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 784 (957)
++ . ..-.-..+|.+.+.+.. +...|++||++|.+ .....|.||..|+. +..+
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALLKTLEE--PPPG 162 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHHHHhcC--CCcC
Confidence 00 0 01123466776665432 33469999999977 45667899999994 5668
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHH
Q 002169 785 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 785 v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~ 828 (957)
+++|.+|++++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 88 68999999998888887653
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=114.18 Aligned_cols=195 Identities=23% Similarity=0.249 Sum_probs=122.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~ 369 (957)
..++.+.|-+...+.+.+.+... .....+|||+|++||||+++|++|+... +.+|+.++|..+....
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 45678899998888887775443 1346689999999999999999999875 4689999998763321
Q ss_pred c-----chhH-------HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------
Q 002169 370 Y-----GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------- 428 (957)
Q Consensus 370 ~-----ge~e-------~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------- 428 (957)
. |... ..-...|+.+ ...+|||||++.+. ......|+..++.-. .
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCceE
Confidence 1 0000 0000112222 24599999999884 344566777775421 1
Q ss_pred CCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHH----HHHHHHHHcC------CCCCCChHHHHHH
Q 002169 429 TDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQR----LEILHALLSG------MEHSLLDSEVEYL 491 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r----~~Il~~~l~~------~~~~l~~~~l~~L 491 (957)
..++.+|++|+.. +...+ ..|+|.. .+.+..|...+| ..+++.++.. ....+++..++.|
T Consensus 329 ~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 329 KVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred eecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1247888888753 22222 2334422 245666665555 3344444332 2246788888888
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+.-.-+.++|+++++.|+..+
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 88765567789999888876543
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.9e-08 Score=113.91 Aligned_cols=194 Identities=21% Similarity=0.254 Sum_probs=119.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~ 369 (957)
..|+++.|..+.++.+++.+... .....+|||+|++||||+++|+++.... +.+|+.+||..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 56788999999888887776433 1235689999999999999999998754 5689999998764321
Q ss_pred c-----chh--------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c------
Q 002169 370 Y-----GES--------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------ 428 (957)
Q Consensus 370 ~-----ge~--------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------ 428 (957)
. |.. ...-..+|+.|.. ..|||||++.|. ..+...|+..++.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCce
Confidence 1 100 0011234444433 489999999883 345566777775421 0
Q ss_pred -CCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC----CCCCCChHHHHH--
Q 002169 429 -TDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG----MEHSLLDSEVEY-- 490 (957)
Q Consensus 429 -~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~----~~~~l~~~~l~~-- 490 (957)
..++.+|++||..- .. +...|+|.. .+.+..|...+|.+ ++..++.. ....+++..+..
T Consensus 345 ~~~dvRiIaat~~~l--~~-~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 345 VPVDVRVVAATHCAL--TT-AVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred eeecceEEeccCCCH--HH-HhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 12357888887631 11 112223322 25677787777754 33333332 233456666555
Q ss_pred -----HHHHcCCCcHHHHHHHHHHHHHH
Q 002169 491 -----LSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 491 -----La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
|..+.-.-+-++|+++++.++..
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 55544444567888888877554
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=104.79 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=104.0
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLF 732 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f 732 (957)
-+.+..+||+||+|+||+++|.++|..+-. .++.+....- .. .-....+|.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHH
Confidence 356678999999999999999999987522 2222221100 00 11345667666
Q ss_pred HHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcc
Q 002169 733 AKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 808 (957)
Q Consensus 733 ~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd 808 (957)
+.+. .+...|++||++|.| .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 6554 344579999999977 45677899999995 56689999999999999999999 885
Q ss_pred eecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 809 RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 809 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
.+.|++|+.++..+.+... .+.. ......+++.+.|
T Consensus 161 -~~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G 196 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAG 196 (334)
T ss_pred -cccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCC
Confidence 6899999988877766532 2322 2234456667777
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=113.19 Aligned_cols=194 Identities=24% Similarity=0.227 Sum_probs=124.7
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ 370 (957)
...++.|....++.+.+.+... ...+.+|||+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 3457889888888887776443 2346789999999999999999999875 46899999987643211
Q ss_pred -----chh-------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cC
Q 002169 371 -----GES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RT 429 (957)
Q Consensus 371 -----ge~-------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~ 429 (957)
|.. ...-...|+.|. ...|||||+|.+. ..+...|+..++.-. ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 100 000011344443 3489999999884 344566777765421 11
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHc----C---CCCCCChHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLS----G---MEHSLLDSEVEYL 491 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~----~---~~~~l~~~~l~~L 491 (957)
.++.+|++||.. +... ...|+|.. .+.|..|...+|.+ +++.++. + ....+++..+..|
T Consensus 321 ~~~RiI~~t~~~--l~~~-~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRD--LREE-VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCC--HHHH-HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 257899999764 2221 12233322 35677887777754 2222222 2 2345788888888
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+.=.-+.++|+++++.|+..+
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhc
Confidence 88776667899999999887665
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=108.20 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=101.7
Q ss_pred ccccCC-cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 002169 295 ISKLGG-LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 356 (957)
Q Consensus 295 ~~~i~G-l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------------- 356 (957)
|+.|.| .+.+++.|+..+... +.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 345555 888888888885322 235567999999999999999999876321
Q ss_pred -------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 357 -------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 357 -------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+. ....+.|+..|++
T Consensus 73 ~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LEE 136 (329)
T PRK08058 73 DSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLEE 136 (329)
T ss_pred hcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhcC
Confidence 2222110 110 11234555554432 2345799999998873 3455679999987
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~ 474 (957)
..+++++|++|+.++.+.|.+++ |. ..++|..|+.++..++++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45678888899999999999999 65 3489999999988777753
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.9e-08 Score=108.87 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=129.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ- 368 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~- 368 (957)
.+...|+|..+.+.++.+.|+.. ......|||.|.+||||-.+||+|.... +.+|+.+||..+-..
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred cccccceecCHHHHHHHHHHHHH----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 35567899999988888887655 3446689999999999999999999766 568999999765332
Q ss_pred --------ccchhHHH---HHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--cc-------
Q 002169 369 --------NYGESEQA---LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CR------- 428 (957)
Q Consensus 369 --------~~ge~e~~---i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~------- 428 (957)
.-|..... -+..|+.|..+ -||+|||..| .-.+...|+..+..- ++
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCcee
Confidence 22211111 12234444444 8999999665 345667777777542 11
Q ss_pred CCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH--------HHHHHHcCC---CCCCChHHHHH
Q 002169 429 TDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE--------ILHALLSGM---EHSLLDSEVEY 490 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~--------Il~~~l~~~---~~~l~~~~l~~ 490 (957)
.-.|.||++||+ ++..+++ .|+|.. ++-+.+|...+|.+ .++.....+ ...++...++.
T Consensus 356 kVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 124899999997 3444444 355532 24556676666632 112222222 44567888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
|....-.-+-++++++++.|+..|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 887765557799999999998877
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.8e-07 Score=101.91 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHHHhcCC--CCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCC----c------------------ccccccc
Q 002169 670 EAFKRIGT--RPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPE----L------------------FSKWVGE 723 (957)
Q Consensus 670 ~~~~~l~~--~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~----l------------------~~~~vg~ 723 (957)
.++.+++. .....+...|++|.||+|+.|.+..++. ..++.+...- + ...+.|.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 45555543 3445599999999999999999987653 1122211100 0 0001121
Q ss_pred ---------------------------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 724 ---------------------------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 724 ---------------------------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
..++.|.+|+.+.-+.|-+|+|||+...++ ...+.+|-..|
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD------------~dsl~AL~~Al 525 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD------------RDSLGALAKAL 525 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc------------HHHHHHHHHHH
Confidence 133458899999999999999999986543 34455666666
Q ss_pred hccccCCcEEEEEecCCCCCCC
Q 002169 777 DGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id 798 (957)
..+.. -||+.||+.+.++
T Consensus 526 ~~F~G----GVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 526 KNFNG----GVVLVSHDEEFIS 543 (582)
T ss_pred HhcCC----cEEEEECcHHHHh
Confidence 65433 2777888776653
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-07 Score=114.11 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=123.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~ 369 (957)
..++++.|....++.+.+.+... .....+|||+|++|||||++|+++.... +.+|+.++|..+....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 45667888888888777665432 1345689999999999999999998754 5689999998763321
Q ss_pred -----cc--------hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------
Q 002169 370 -----YG--------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------- 427 (957)
Q Consensus 370 -----~g--------e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--------- 427 (957)
.| ...... ..|+.+. ..+|||||++.+. ..+...|+..++.-.
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 11 111111 2344443 3599999999873 345566777775421
Q ss_pred cCCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC----CC---CCCChHHHH
Q 002169 428 RTDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG----ME---HSLLDSEVE 489 (957)
Q Consensus 428 ~~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~----~~---~~l~~~~l~ 489 (957)
...++.+|++|+.. +.. +...|+|.. .+.|..|...+|.+ +++.++.+ ++ ..+++..++
T Consensus 508 ~~~~~RiI~~t~~~--l~~-~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRD--LKK-MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCC--HHH-HHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12357889998763 111 111223332 35678888887754 23333322 22 236788888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 490 YLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 490 ~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.|..+.-.-+.++|+++++.|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 888776666778999999887654
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=93.38 Aligned_cols=176 Identities=16% Similarity=0.241 Sum_probs=118.9
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-C--CcEEEEeCCCc---
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-G--LNFLAVKGPEL--- 716 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~--~~~i~v~~~~l--- 716 (957)
..++.+.+.++....++.... -..-.++++|||+|+||-|.+.++-+++ | .+=..+....+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~-------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS-------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc-------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 345556677777766655442 1223579999999999999999998876 2 11111111000
Q ss_pred ----------cc--------ccccchHH-HHHHHHHHHHhCCC---------eEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 717 ----------FS--------KWVGESEK-AVRSLFAKARANAP---------SIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 717 ----------~~--------~~vg~~~~-~ir~~f~~A~~~~p---------~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
.+ ...|..++ -+.++++.+-+.+| .+++|-|+|.+. ...
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-------------~dA 143 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-------------RDA 143 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-------------HHH
Confidence 00 11233333 34666666555443 699999999773 445
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t 847 (957)
+.+|-+.|+... .+..+|..+|....|-+++.+ |+ -.|.+|.|+.++...++...+.+.++.-. .-+..+|+.+
T Consensus 144 Q~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 144 QHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 556777777653 467889999999999999998 76 57889999999999999999988776533 3356677777
Q ss_pred cC
Q 002169 848 EG 849 (957)
Q Consensus 848 ~g 849 (957)
.|
T Consensus 219 ~~ 220 (351)
T KOG2035|consen 219 NR 220 (351)
T ss_pred cc
Confidence 66
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=104.38 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
+.+.+++.+.|+||.|+||||+.++++..
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 56778999999999999999999999954
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=110.06 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999875
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=100.14 Aligned_cols=131 Identities=24% Similarity=0.362 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc-----
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY----- 370 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~----- 370 (957)
.|-++.++.+.+.+... ...+.+|||+|++||||+++|+++.+.. +.+|+.|+|..+.....
T Consensus 2 iG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhh
Confidence 45555555555554332 1335789999999999999999999865 46899999987633211
Q ss_pred chh-------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--c-------cCCCeEE
Q 002169 371 GES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--C-------RTDGVLV 434 (957)
Q Consensus 371 ge~-------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~-------~~~~v~v 434 (957)
|.. ...-..+|+.|... +||||||+.|. ..+...|+..|+.- . ..-++.+
T Consensus 72 G~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 72 GHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp EBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred ccccccccccccccCCceeeccce---EEeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 110 01112466666555 99999999883 45667788888742 1 1236899
Q ss_pred EEecCCCCCchhhhhCCCCcce
Q 002169 435 IAATNRPDSIEPALRRPGRLDR 456 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~ 456 (957)
|++|+. .+...+. .|+|..
T Consensus 138 I~st~~--~l~~~v~-~g~fr~ 156 (168)
T PF00158_consen 138 IASTSK--DLEELVE-QGRFRE 156 (168)
T ss_dssp EEEESS---HHHHHH-TTSS-H
T ss_pred EeecCc--CHHHHHH-cCCChH
Confidence 999985 3444433 456643
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-08 Score=104.48 Aligned_cols=47 Identities=38% Similarity=0.450 Sum_probs=35.2
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
+|.+|.|++..|..|.-.. .| +.++||+||||||||++|+.+...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAA-----------aG---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA-----------AG---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH-----------HC---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred ChhhhcCcHHHHHHHHHHH-----------cC---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 3678999999888876552 23 46999999999999999999997763
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-07 Score=101.91 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=46.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEec
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVNG 362 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~-------~~i~i~~ 362 (957)
++.|+++.++++.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 78999999888887764442 122 24577899999999999999999998866 6676665
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=103.12 Aligned_cols=233 Identities=18% Similarity=0.238 Sum_probs=144.8
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
+...|+.+++.....+.+.+.... +. .....+|+.|.+||||-++||+-...+ ..||+.++|..+-
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k-------~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK-------LA----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH-------hh----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 445677777777666655443211 11 123459999999999999999987654 6799999997653
Q ss_pred ---------cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 718 ---------SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 718 ---------~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
+.-.| .+.-..+|+.|.++ .+|+|||..+ +.+++..||..+..-.
T Consensus 268 e~~aEsElFG~apg--~~gk~GffE~AngG---TVlLDeIgEm-------------Sp~lQaKLLRFL~DGtFRRVGee~ 329 (511)
T COG3283 268 EDAAESELFGHAPG--DEGKKGFFEQANGG---TVLLDEIGEM-------------SPRLQAKLLRFLNDGTFRRVGEDH 329 (511)
T ss_pred hhHhHHHHhcCCCC--CCCccchhhhccCC---eEEeehhhhc-------------CHHHHHHHHHHhcCCceeecCCcc
Confidence 22222 23446789999888 8999999855 5677788888886421
Q ss_pred -cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH--------HHHHHHHhcCCCCC-ccc---H
Q 002169 781 -QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE--------EIFRIHLRKIPCSS-DVN---I 840 (957)
Q Consensus 781 -~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~--------~Il~~~l~~~~~~~-~~~---l 840 (957)
...+|.||+||..+-. .+...|+|.. ++.+..|...+|. .++..+..+.+... ..+ +
T Consensus 330 Ev~vdVRVIcatq~nL~---~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 330 EVHVDVRVICATQVNLV---ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred eEEEEEEEEecccccHH---HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 1247999999986633 3444456554 3334556665553 34455555555442 222 2
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-----chHHHHHHHHHHHHHhcCc
Q 002169 841 RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS-----EIHSYKELSAKFQRLVHSN 910 (957)
Q Consensus 841 ~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~-----~~~~y~~~~~~~~~~v~~~ 910 (957)
..|.+...-=+.+++.+.+-+|+... +...++.+++.-+-....+. ....+.++...|++++...
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~~-----Eg~~l~i~~i~Lp~~~~~~~~~~~~~~gsLdei~~~fE~~VL~r 476 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTLL-----EGYELRIEDILLPDYDAATVVGEDALEGSLDEIVSRFERSVLTR 476 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHh-----ccCccchhhcccCCcccccccchhhccCCHHHHHHHHHHHHHHH
Confidence 33333322225789999988887654 34456666665433322222 3346677777777776543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-07 Score=110.52 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=28.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677889999999999999999999999875
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=113.94 Aligned_cols=155 Identities=23% Similarity=0.342 Sum_probs=96.0
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--------------------
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------------------- 354 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-------------------- 354 (957)
|..|.|.+..+..+.-....+ ...+|||.|++|||||++|++++..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 567899998876664442211 124699999999999999999998872
Q ss_pred ---------------CcEEEEecccccccccchh--HHHHH---HHHHH--HhccCCeEEEEcCccccccCCcCCCchHH
Q 002169 355 ---------------VNLFTVNGPEVVSQNYGES--EQALH---EVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELS 412 (957)
Q Consensus 355 ---------------~~~i~i~~~~l~~~~~ge~--e~~i~---~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~~~ 412 (957)
.+|+.+.+.......+|.. +..++ ..++. .......||||||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~----------- 139 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD----------- 139 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC-----------
Confidence 3444444332211112211 11110 00100 001123599999998873
Q ss_pred HHHHHHHHHHhhcc----c-------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCC-HHHHHHHHHH
Q 002169 413 QRMVATLLNLMDGV----C-------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPS-PAQRLEILHA 474 (957)
Q Consensus 413 ~~i~~~Ll~~ld~l----~-------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~-~~~r~~Il~~ 474 (957)
..++..|+..|+.- . ...++.+|+++|+.+ .+.++|.. ||+..+.++.+. .+++.++++.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 45567788887631 1 123589999998643 67888988 998888887764 5666777654
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.1e-07 Score=94.12 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=125.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC--c-------------
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV--N------------- 356 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~--~------------- 356 (957)
.+++.+.+.++....++.... -..-.|+++|||+|+||-|.+.++-+++ |. +
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 345566677776666666521 0112589999999999999999998776 31 1
Q ss_pred -------------EEEEecccccccccchh-HHHHHHHHHHHhccC---------CeEEEEcCccccccCCcCCCchHHH
Q 002169 357 -------------LFTVNGPEVVSQNYGES-EQALHEVFDSASQSA---------PAVVFIDELDAIAPARKDGGEELSQ 413 (957)
Q Consensus 357 -------------~i~i~~~~l~~~~~ge~-e~~i~~vf~~a~~~~---------p~IL~IDEiD~l~~~~~~~~~~~~~ 413 (957)
.++++.++ .|-. +-.+.++++...+.+ -.+++|-|+|.|. +
T Consensus 78 ~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~ 141 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----------R 141 (351)
T ss_pred CceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----------H
Confidence 02222222 2322 234555555443332 3699999999884 4
Q ss_pred HHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 002169 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSM 493 (957)
Q Consensus 414 ~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~ 493 (957)
.....|...|+.+. ++..+|..+|....+-+++++ |.- .|.++-|+.++...++...+.+.++.++...+..+|+
T Consensus 142 dAQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 142 DAQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 45667888888874 467889999999999999999 542 3889999999999999999999999999988999999
Q ss_pred HcCCCc
Q 002169 494 ATHGFV 499 (957)
Q Consensus 494 ~t~g~~ 499 (957)
.+.|--
T Consensus 217 kS~~nL 222 (351)
T KOG2035|consen 217 KSNRNL 222 (351)
T ss_pred HhcccH
Confidence 887643
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-07 Score=112.75 Aligned_cols=194 Identities=21% Similarity=0.249 Sum_probs=121.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ- 368 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~- 368 (957)
..|+++.|.+.....+.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 45778889888777776664332 1345679999999999999999999865 468999999876321
Q ss_pred ----ccchh----HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccC-------CC
Q 002169 369 ----NYGES----EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRT-------DG 431 (957)
Q Consensus 369 ----~~ge~----e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~-------~~ 431 (957)
..|.. .......|+.| ...+|||||++.+. ..+...|+..++.- ... -+
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 11100 00000123322 34589999999884 34455677776542 111 14
Q ss_pred eEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC------CCCCCChHHHHHHHHH
Q 002169 432 VLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG------MEHSLLDSEVEYLSMA 494 (957)
Q Consensus 432 v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~------~~~~l~~~~l~~La~~ 494 (957)
+.+|++|+.. +.. +...|+|.. .+.+.+|...+|.+ +++.++.. ....+++..++.|..+
T Consensus 458 ~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 458 VRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred EEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 6789888753 222 222244422 36677888777743 33333322 1345688888888887
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q 002169 495 THGFVGADLAALCNEAALV 513 (957)
Q Consensus 495 t~g~~gaDi~~l~~~A~~~ 513 (957)
.=.-+.++|+++++.|...
T Consensus 535 ~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 535 RWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 6555678899888877543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=98.18 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.|.|.||+|||||||.+++|+..
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999765
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=101.29 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 675 IGTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 675 l~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+|+.....|.++||+|+||+|+.+.+.+.+
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 467777789999999999999999998664
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.4e-07 Score=100.01 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGL-----------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-----------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
-+.+..+||.||.|+||+++|+++|..+-. +|+.+...+ -++. -....+|.+.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHH
Confidence 355678999999999999999999986521 233332211 0111 13445676665
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +...|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-Q 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-e
Confidence 5533 33579999999977 45667889999995 45689999999999999999999 87 4
Q ss_pred ecccCCCCHHHHHHHHHH
Q 002169 810 LLYVGPPNETDREEIFRI 827 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~ 827 (957)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888777654
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=93.08 Aligned_cols=132 Identities=26% Similarity=0.415 Sum_probs=87.5
Q ss_pred CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------------c
Q 002169 300 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----------------------N 356 (957)
Q Consensus 300 Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-----------------------~ 356 (957)
|.+.+++.|.+.+... +.+..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 5677777777775322 33567899999999999999999977621 2
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCe
Q 002169 357 LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 432 (957)
Q Consensus 357 ~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v 432 (957)
++.+....-.. . -....++.+.+.+. .....|++|||+|.+. ....+.|+..|++. ..++
T Consensus 70 ~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEep--p~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEP--PENT 133 (162)
T ss_dssp EEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST--TTTE
T ss_pred eEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCC--CCCE
Confidence 34443322100 0 12345666666543 2346799999999883 45678899999984 5689
Q ss_pred EEEEecCCCCCchhhhhCCCCcceeeeec
Q 002169 433 LVIAATNRPDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 433 ~vI~ttN~~~~ld~al~r~gRfd~~I~i~ 461 (957)
.+|++|+.++.+.|.+++ |.- .+.|+
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc~-~i~~~ 159 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RCQ-VIRFR 159 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TSE-EEEE-
T ss_pred EEEEEECChHHChHHHHh--hce-EEecC
Confidence 999999999999999999 763 25554
|
... |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=110.99 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=119.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~ 368 (957)
...|+++.|.+...+.+.+.+... .....+|+|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 457888999998777766664322 1235679999999999999999987654 358999999876432
Q ss_pred cc-----chhH-------HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--cc------
Q 002169 369 NY-----GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CR------ 428 (957)
Q Consensus 369 ~~-----ge~e-------~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~------ 428 (957)
.. |... ..-..+|+.|. ...|||||+|.+. ..+...|+..++.- ..
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCcc
Confidence 11 1000 00112344443 3489999999884 34445677776542 11
Q ss_pred -CCCeEEEEecCCCC-C------chhhhhCCCCcceeeeecCCCHHHHHH-H---HHHH----HcCC---CCCCChHHHH
Q 002169 429 -TDGVLVIAATNRPD-S------IEPALRRPGRLDREIEIAVPSPAQRLE-I---LHAL----LSGM---EHSLLDSEVE 489 (957)
Q Consensus 429 -~~~v~vI~ttN~~~-~------ld~al~r~gRfd~~I~i~~P~~~~r~~-I---l~~~----l~~~---~~~l~~~~l~ 489 (957)
..++.||++|+..- . +.+.|.. |+.. +.+..|...+|.+ | ++.+ ..+. ...+++..++
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12467888886531 1 2233333 4332 6677777777753 2 2222 2222 2356777788
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 490 YLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 490 ~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.|..+.-.-+-++|++++..|...
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHh
Confidence 877665555668888888777554
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=103.06 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=95.0
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC-------------------------cEEEEeCCCc---cccc-ccchHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL-------------------------NFLAVKGPEL---FSKW-VGESEKAV 728 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~-------------------------~~i~v~~~~l---~~~~-vg~~~~~i 728 (957)
+.+..+||+||+|+|||++|+++|+.+.. .|+.+....- -++. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56677999999999999999999987532 3444433110 0000 01135667
Q ss_pred HHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCC
Q 002169 729 RSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804 (957)
Q Consensus 729 r~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~ 804 (957)
|.+.+.+.. +...|+++|+++.+ .....+.++..|+... .++++|++||+++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S- 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS- 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH-
Confidence 888777754 33469999999866 4556678888888653 357788899999999999998
Q ss_pred CCcceecccCCCCHHHHHHHHHH
Q 002169 805 GRFDRLLYVGPPNETDREEIFRI 827 (957)
Q Consensus 805 gRfd~~i~~~~P~~~er~~Il~~ 827 (957)
|+ ..+.|++|+.++..+.+..
T Consensus 163 -Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 -RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -Hh-hhhcCCCCCHHHHHHHHHh
Confidence 87 5888999999887777654
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=105.44 Aligned_cols=97 Identities=28% Similarity=0.454 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc-ccchh-HHHHHHHHHHHh----ccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYGES-EQALHEVFDSAS----QSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~-~~ge~-e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~ 402 (957)
..+|||.||+|+|||.||+.||+.++.+|...+|..+... |+||- |..|..+++.|. ..+..|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 4579999999999999999999999999999999988764 77764 667777877654 23456999999999985
Q ss_pred CCcCCC---chHHHHHHHHHHHHhhc
Q 002169 403 ARKDGG---EELSQRMVATLLNLMDG 425 (957)
Q Consensus 403 ~~~~~~---~~~~~~i~~~Ll~~ld~ 425 (957)
....-. +-...-+...||.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 433211 11234567778999887
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-06 Score=92.76 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=86.0
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC------------CCCCChhhhCCCCc
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 807 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~------------~~~id~aLlr~gRf 807 (957)
|.||||||+|.|-- +-++-|=..+++ ..--++|+|||+ |+-|+-.++. |.
T Consensus 289 pGVLFIDEvHMLDI-------------EcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~ 350 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDI-------------ECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM 350 (454)
T ss_pred cceEEEeeehhhhh-------------HHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh
Confidence 77999999996621 112222222331 112356677775 4456777777 65
Q ss_pred ceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 808 DRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 808 d~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.+|.-.+++.++..+||++.+....+.-+ ..++.|......-+-+-..+++.-|.+.++++. ...+..+|++.+..
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--GKVVEVDDIERVYR 427 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc--CceeehhHHHHHHH
Confidence 46777889999999999999977655432 335556666555556666778888888888876 67788899998877
Q ss_pred hhCC
Q 002169 887 HVQP 890 (957)
Q Consensus 887 ~~~p 890 (957)
-...
T Consensus 428 LFlD 431 (454)
T KOG2680|consen 428 LFLD 431 (454)
T ss_pred HHhh
Confidence 6553
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=109.41 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=101.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEEecc-cccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTVNGP-EVVS 367 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~----~~i~i~~~-~l~~ 367 (957)
.+|+++.|....++.+.-. +..+.+++|+||||||||+++++++..+.. .++.+..- ++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 3677888888775543322 345678999999999999999999975521 11111110 0000
Q ss_pred -----------------------cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 368 -----------------------QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 368 -----------------------~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
..+|.....-...+..|. ..+|||||++.+. ..++..|++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 000100000001222332 3599999998763 355666777775
Q ss_pred ccc-----------cCCCeEEEEecCCC-----C------------------CchhhhhCCCCcceeeeecCCCHHHHHH
Q 002169 425 GVC-----------RTDGVLVIAATNRP-----D------------------SIEPALRRPGRLDREIEIAVPSPAQRLE 470 (957)
Q Consensus 425 ~l~-----------~~~~v~vI~ttN~~-----~------------------~ld~al~r~gRfd~~I~i~~P~~~~r~~ 470 (957)
.-. ...++.+|+++|+. . .+...++. |||-.+.++.++..+.
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l-- 396 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL-- 396 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH--
Confidence 421 12468999999963 1 36666777 8988888887765421
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 471 ILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 471 Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
.+...+-+.++++.-+.+|......|+.
T Consensus 397 ---------------------~~~~~~e~s~~ir~rV~~Ar~~q~~R~~ 424 (499)
T TIGR00368 397 ---------------------LSTGSGESSAEVKQRVIKAREIQNIRYE 424 (499)
T ss_pred ---------------------hccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1112234556777777777666666654
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=108.17 Aligned_cols=194 Identities=22% Similarity=0.283 Sum_probs=125.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc--
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ-- 368 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~-- 368 (957)
....+.|....++++++.+... .....+|||+|++||||-++||+|.... +.+|+.+||..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 3567889999999988886433 2345679999999999999999999766 459999999765332
Q ss_pred -------ccchhH---HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--c-------cC
Q 002169 369 -------NYGESE---QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--C-------RT 429 (957)
Q Consensus 369 -------~~ge~e---~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~-------~~ 429 (957)
.-|... ..-...|+.|..+ .||||||..+ ...+...|+..+..- . ..
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 111111 1112355666555 9999999766 355667788877642 1 12
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHc----CC---CCCCChHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLS----GM---EHSLLDSEVEYL 491 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~----~~---~~~l~~~~l~~L 491 (957)
-++.||++||+. +...+. .|||.. ++.+..|...+|.+ +++.++. .. ...+++..+..|
T Consensus 275 vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 258899999863 333332 345533 46788888888754 2233322 22 234566677766
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+.=.-+-++|+++++.++..+
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcC
Confidence 65544445578888888775544
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=98.13 Aligned_cols=147 Identities=17% Similarity=0.214 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------cEEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------NLFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~------------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||+|+||+++|+++|+.+-+ .++.+...+ ++.+ .-..+|++.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 3557999999999999999999987632 122222110 1111 23345555444
Q ss_pred H----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 A----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+ ..+...|++||++|.+. ....+.|++.|++ ...++++|.+|+.++.+.|.+++ |. ..+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred HhhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 3 23445799999999884 3456789999998 56788999999999999999999 76 3488
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|..|+.++..+.+..... ..+.....++..+.|-.
T Consensus 163 ~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSS-----AEISEILTALRINYGRP 197 (325)
T ss_pred CCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCH
Confidence 999999988877775421 12223444455555543
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=103.83 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=46.8
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCC-CCCcceeeCCCCChhhHHHHHHHHHhCC-------cEEEEeC
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAVKG 713 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~-~~~giLL~GPpGtGKTtlAkaiA~~~~~-------~~i~v~~ 713 (957)
++.|++++++++.+.+.... .|.. ..+.++|.|||||||||+|++||+.++. +++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 89999999998887764321 1222 3456899999999999999999999876 8888877
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=92.50 Aligned_cols=118 Identities=24% Similarity=0.294 Sum_probs=84.1
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC------------CCCchhhhhCCCCcce
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 456 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~------------~~~ld~al~r~gRfd~ 456 (957)
|.||||||++.|- -.-.+-|...+++ .--.++|++||+ |+-++-.+.. |+ -
T Consensus 289 pGVLFIDEvHMLD-----------IEcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD-----------IECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-L 351 (454)
T ss_pred cceEEEeeehhhh-----------hHHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-h
Confidence 7889999988762 1222223333332 223467777776 4556666655 44 2
Q ss_pred eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 457 ~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
.|.-.+++.++..+||+..+......+.+..++.|......-+-+.-..|+..|.+.|.+|......
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~ 418 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVE 418 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceee
Confidence 3667788999999999999998888888999999988877777777788899999999988655433
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=105.10 Aligned_cols=192 Identities=22% Similarity=0.234 Sum_probs=120.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEecccccccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~----l~~~~i~i~~~~l~~~~ 369 (957)
.+.++.|-+...+++++.+... .+.+.+||++|++||||+.+|++|... ...+|+.+||..+...-
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 3467888888888877776441 245788999999999999999999843 35689999998765432
Q ss_pred c-------------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------c
Q 002169 370 Y-------------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------C 427 (957)
Q Consensus 370 ~-------------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~ 427 (957)
. | ....-..+|+.|..+ +||+|||+.+-+ .....|+..|+.- .
T Consensus 146 ~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~~~ 210 (403)
T COG1221 146 QEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGSQP 210 (403)
T ss_pred HHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCCCC
Confidence 1 1 111223355555444 999999988843 3445688888762 1
Q ss_pred cCCCeEEEEecCCCCCchhhhhCC-C----CcceeeeecCCCHHHHHH-H---H----HHHHcCCCCCCC---hHHHHHH
Q 002169 428 RTDGVLVIAATNRPDSIEPALRRP-G----RLDREIEIAVPSPAQRLE-I---L----HALLSGMEHSLL---DSEVEYL 491 (957)
Q Consensus 428 ~~~~v~vI~ttN~~~~ld~al~r~-g----Rfd~~I~i~~P~~~~r~~-I---l----~~~l~~~~~~l~---~~~l~~L 491 (957)
...+|.+|++||. .++.+++.. . |+ .+.|..|...+|.+ | + +.+.++.+..+. +..+..|
T Consensus 211 ~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 211 RPVDVRLICATTE--DLEEAVLAGADLTRRLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred cCCCceeeecccc--CHHHHHHhhcchhhhhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2345888998873 344433320 0 22 24566677666632 2 2 233344444332 2345555
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
-...-.-+-++++++++.++..+
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHh
Confidence 44443345688999998887666
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=103.49 Aligned_cols=99 Identities=26% Similarity=0.446 Sum_probs=73.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cccccchHH-HHHHHHHHHHh----CCCeEEEEeCCchhhhh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGESEK-AVRSLFAKARA----NAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~~vg~~~~-~ir~~f~~A~~----~~p~ILfiDEid~l~~~ 754 (957)
.+|||.||+|+|||+||+.||+.++.||...++..|. ..|+|+... .+..++..|.. .+..|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5699999999999999999999999999999998875 469998544 44555544321 22349999999999854
Q ss_pred cCCCCCC-CcchHHHHHHHHHHHhcc
Q 002169 755 RGKESDG-VSVSDRVMSQLLVELDGL 779 (957)
Q Consensus 755 r~~~~~~-~~~~~~v~~~LL~~ld~~ 779 (957)
....... .-..+-++..||..+++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 4333222 223467888899999874
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=102.79 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------------------EEEEecccccc--------------
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------------------LFTVNGPEVVS-------------- 367 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------------------~i~i~~~~l~~-------------- 367 (957)
+.+..+||+||+|+||+++|+++|+.+.+. +..+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 457789999999999999999999877432 12221110000
Q ss_pred cccc---------hhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 368 QNYG---------ESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 368 ~~~g---------e~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
...| -.-..++.+.+.+. .....|++||++|.+. ....+.||+.|++ ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCcCcEE
Confidence 0000 01234555555432 2335699999999884 3455779999997 5678999
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~ 474 (957)
|++|++++.+.|.+++ |+ ..+.|+.|+.++..+.|..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 9999999999999999 77 4699999999988888865
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-06 Score=98.13 Aligned_cols=151 Identities=18% Similarity=0.235 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------cEEEEecccccccccchhHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------NLFTVNGPEVVSQNYGESEQALHEVFD 382 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~------------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~ 382 (957)
+.+..+||+||+|+||+++|+++|..+-+ .+..+.... .... -.-..+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cccc--CCHHHHHHHHH
Confidence 34567999999999999999999987622 122222110 0000 11234444444
Q ss_pred H----HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceee
Q 002169 383 S----ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREI 458 (957)
Q Consensus 383 ~----a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I 458 (957)
. ...+...|++||++|.+. ....+.||+.|++ ...++++|.+|+.++.+.|.+++ |.. .+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 3 333456799999999884 3456789999998 56789999999999999999999 764 48
Q ss_pred eecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 459 EIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 459 ~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.|+.++..+.+... . .+++.....++..+.|-.+.
T Consensus 163 ~~~~~~~~~~~~~L~~~---~--~~~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE---V--TMSQDALLAALRLSAGAPGA 200 (334)
T ss_pred cCCCCCHHHHHHHHHHc---c--CCCHHHHHHHHHHcCCCHHH
Confidence 89999988877766532 1 23455556666666665443
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=112.20 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE----eccccccccc--
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV----NGPEVVSQNY-- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i----~~~~l~~~~~-- 370 (957)
.|.|.+.+|..|.-.+.-.-....-....+...-+|||+|+||||||++|++++.......+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 4677777655543332111000000011233345899999999999999999999876443221 2222211111
Q ss_pred ---chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEEE
Q 002169 371 ---GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIA 436 (957)
Q Consensus 371 ---ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ 436 (957)
|+...... .+.. ....+++|||+|.+. ......|++.|+.-. -..++.||+
T Consensus 284 ~~~g~~~~~~G-~l~~---A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 284 PETREFTLEGG-ALVL---ADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred cCcceEEecCc-cEEe---cCCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 11000000 1111 224599999999874 234456777775421 124688999
Q ss_pred ecCCCC-------------CchhhhhCCCCcceee-eecCCCHHHHHHHHHHHHc
Q 002169 437 ATNRPD-------------SIEPALRRPGRLDREI-EIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 437 ttN~~~-------------~ld~al~r~gRfd~~I-~i~~P~~~~r~~Il~~~l~ 477 (957)
|+|+.+ .+++++.+ |||-.+ ..+.|+.+...+|.+..+.
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999863 58899999 998854 5578999999999987654
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=98.24 Aligned_cols=158 Identities=25% Similarity=0.335 Sum_probs=104.0
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC--------C
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG--------P 714 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~--------~ 714 (957)
.-|.-++|++..|..|.-... .+.-.|+|+-|+.||||||++|+||..+.---+...+ +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 346778899999887643321 1234579999999999999999999887321111111 0
Q ss_pred ------------------------CcccccccchHH----------HH--------HHHHHHHHhCCCeEEEEeCCchhh
Q 002169 715 ------------------------ELFSKWVGESEK----------AV--------RSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 715 ------------------------~l~~~~vg~~~~----------~i--------r~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
.++..=+|.++. .+ -.++.+|..+ |||+||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRG---IlYvDEvnlL- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRG---ILYVDEVNLL- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCC---EEEEeccccc-
Confidence 000000112222 11 1334555555 9999999855
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhcc-----------ccCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCC-CHH
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGL-----------HQRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPP-NET 819 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P-~~~ 819 (957)
.+.+++.||..+..- ....++++|+++|.-+ .|-|.|+. ||...+.+..| +.+
T Consensus 157 ------------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 157 ------------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred ------------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 567888888887642 2344788999998654 58899998 99999888655 567
Q ss_pred HHHHHHHHHHhc
Q 002169 820 DREEIFRIHLRK 831 (957)
Q Consensus 820 er~~Il~~~l~~ 831 (957)
+|.+|.++.+.-
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 899999877653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.7e-08 Score=100.18 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=34.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS 367 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~ 367 (957)
++.+..+..++|.||+||||||+.|++.+..... -+.+++.++.+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 4678899999999999999999999999766332 25566555444
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=96.25 Aligned_cols=152 Identities=22% Similarity=0.313 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCc---------------------EEEEe-cccccccc--cchhHHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVN---------------------LFTVN-GPEVVSQN--YGESEQALHEVFDSA 384 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~---------------------~i~i~-~~~l~~~~--~ge~e~~i~~vf~~a 384 (957)
+..+||+||+|+||+++|.++|..+-+. +..+. .++-.+.. ..-.-..||++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 5579999999999999999999766321 22221 00000000 001133556665544
Q ss_pred h----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeee
Q 002169 385 S----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 460 (957)
Q Consensus 385 ~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i 460 (957)
. .+.-.|++||++|.+. ....+.|++.|++ ...++++|.+|+.++.+.|.+++ |+. .+.|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ-RLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe-EeeC
Confidence 3 2234699999999884 3456779999988 45678899999999999999999 763 4889
Q ss_pred cCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 461 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
+.|+.++..+.+... + +++.+...++..+.|-.+.-
T Consensus 170 ~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLA 205 (319)
T ss_pred CCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHH
Confidence 999998777766531 2 34444555666666655443
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8e-07 Score=109.29 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=91.2
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHH--------HhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-------CcEEEE
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAF--------KRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-------LNFLAV 711 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~--------~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v 711 (957)
.|.|.+.+|+.+.=.+-......... ....++...+|||+|+||||||.+|++++.... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 47899999987754442211100000 001234455799999999999999999998653 344444
Q ss_pred eCCCccc-c--cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 712 KGPELFS-K--WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 712 ~~~~l~~-~--~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
.+..... . ..|+.. .-...+..|.++ +++|||++.+ .......|+..|+...
T Consensus 531 gLTa~~~~~d~~tG~~~-le~GaLvlAdgG---tL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 531 GLTASIKFNESDNGRAM-IQPGAVVLANGG---VCCIDELDKC-------------HNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred cccchhhhcccccCccc-ccCCcEEEcCCC---eEEecchhhC-------------CHHHHHHHHHHHhCCEEEEecCCc
Confidence 3332211 0 001000 001123344444 9999999976 3445556777775431
Q ss_pred ---cCCcEEEEEecCCCC-------------CCChhhhCCCCcceeccc-CCCCHHH
Q 002169 781 ---QRVNVTVIAATNRPD-------------KIDPALLRPGRFDRLLYV-GPPNETD 820 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~-------------~id~aLlr~gRfd~~i~~-~~P~~~e 820 (957)
-..++.||+|+|..+ .+.++|++ |||-++.+ +.|+.+.
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDT 648 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHH
Confidence 124789999999742 25799999 99976544 5566543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.2e-08 Score=105.33 Aligned_cols=83 Identities=27% Similarity=0.333 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhh------
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALL------ 802 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLl------ 802 (957)
|..+++|....|.||++||+.+.++-+. +-+++..+..+....+.+||+++|++.. |++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~------------Q~evl~ll~~l~~~~~~tvv~vlHDlN~---A~ryad~~i 210 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAH------------QIEVLELLRDLNREKGLTVVMVLHDLNL---AARYADHLI 210 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHH------------HHHHHHHHHHHHHhcCCEEEEEecCHHH---HHHhCCEEE
Confidence 6778999999999999999998765432 2245566666665668899999997754 432
Q ss_pred --CCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 803 --RPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 803 --r~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
+.|+ ++..+.|..-...+.++..+
T Consensus 211 ~lk~G~---i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 211 LLKDGK---IVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred EEECCe---EEeecCcchhcCHHHHHHHh
Confidence 3233 45556665544444444433
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=100.59 Aligned_cols=131 Identities=27% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccc----hhHHHHHHHHHHHhccCCeEEEEcCcccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG----ESEQALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~g----e~e~~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
.+.+++|+|++|||||+||.++|+++ +..++.++.++++..... ........+++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 35679999999999999999999876 678888888776654321 11112223444332 3459999998542
Q ss_pred ccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC-CCc----hhhhhCCCCc---ceeeeecCCCHHHHHHHH
Q 002169 401 APARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP-DSI----EPALRRPGRL---DREIEIAVPSPAQRLEIL 472 (957)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~-~~l----d~al~r~gRf---d~~I~i~~P~~~~r~~Il 472 (957)
. ........|.++++..... +..+|+|||.+ +++ +..+.+ |+ ...|.+.-++ -|..+.
T Consensus 191 ~---------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d--~R~~~~ 256 (268)
T PRK08116 191 R---------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKS--YRKEIA 256 (268)
T ss_pred C---------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcC--hhHHHH
Confidence 1 1123345677777765333 34567777753 343 344444 43 2235555555 355544
Q ss_pred HH
Q 002169 473 HA 474 (957)
Q Consensus 473 ~~ 474 (957)
+.
T Consensus 257 ~e 258 (268)
T PRK08116 257 KE 258 (268)
T ss_pred HH
Confidence 43
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-07 Score=100.58 Aligned_cols=123 Identities=15% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc----hHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~----~~~~ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
..+++|+|++|||||.||.+||+++ +.+++.++.++++..+... .......+++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4579999999999999999999985 6788888887766543211 1112223444333 2349999999632
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC-C----CChhhhCCCCc---ceecccCCCCH
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD-K----IDPALLRPGRF---DRLLYVGPPNE 818 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~-~----id~aLlr~gRf---d~~i~~~~P~~ 818 (957)
...+.....|...++..... +..+|+|||.+. . ++..+.+ |+ ...|.+.-++.
T Consensus 191 ----------~~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 ----------RDTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 12344456676777754333 445788888652 2 3556665 53 23455555554
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.5e-07 Score=105.82 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc--------------cc--------------cch
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK--------------WV--------------GES 724 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~--------------~v--------------g~~ 724 (957)
|+.+...+|+.||||+|||+++-.++.+. +-+.+.+...+-... +. ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56677779999999999999999887654 445555554332111 00 011
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
+..+..+.+.+....|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 44556677777788899999999987743
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-07 Score=108.48 Aligned_cols=134 Identities=22% Similarity=0.281 Sum_probs=87.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEecccccccccchhH--HHHH-H--HHHH--HhccCCeEEEEcCcccc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNYGESE--QALH-E--VFDS--ASQSAPAVVFIDELDAI 400 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~~~~ge~e--~~i~-~--vf~~--a~~~~p~IL~IDEiD~l 400 (957)
.+|||.|+||||||++|++++..++. +|+.+..........|... ..+. . .|+. .......+|||||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998764 4777764222222223211 0000 0 0110 00112359999999887
Q ss_pred ccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC---CchhhhhCCCCcceeeeec-CCCH
Q 002169 401 APARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD---SIEPALRRPGRLDREIEIA-VPSP 465 (957)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~---~ld~al~r~gRfd~~I~i~-~P~~ 465 (957)
. ..+...|++.|+.-. ...++.+|+++|..+ .+.+++.. ||...+.+. .|+.
T Consensus 97 ~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 D-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred C-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 3 456677888886421 123588999999875 68889988 998876665 4677
Q ss_pred HHHHHHHHHHH
Q 002169 466 AQRLEILHALL 476 (957)
Q Consensus 466 ~~r~~Il~~~l 476 (957)
++|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.4e-07 Score=93.71 Aligned_cols=181 Identities=24% Similarity=0.326 Sum_probs=99.8
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEecccccc--------
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPEVVS-------- 367 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~---~i~i~~~~l~~-------- 367 (957)
.|-+.+.+.|.+++.. .+...++|+||.|+|||+|++.+...+... .+.+.......
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 3666777777666422 236789999999999999999999887321 11111100000
Q ss_pred --------------c-------------ccchhHHHHHHHHHHHhcc-CCeEEEEcCccccc-cCCcCCCchHHHHHHHH
Q 002169 368 --------------Q-------------NYGESEQALHEVFDSASQS-APAVVFIDELDAIA-PARKDGGEELSQRMVAT 418 (957)
Q Consensus 368 --------------~-------------~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~-~~~~~~~~~~~~~i~~~ 418 (957)
. ........+..+++..... ...||+|||++.+. ... ........
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHH
Confidence 0 0011233455555554433 24899999999997 211 12456667
Q ss_pred HHHHhhccccCCCeEEEEecCCCCCchh----hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCC--ChHHHHHHH
Q 002169 419 LLNLMDGVCRTDGVLVIAATNRPDSIEP----ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL--LDSEVEYLS 492 (957)
Q Consensus 419 Ll~~ld~l~~~~~v~vI~ttN~~~~ld~----al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l--~~~~l~~La 492 (957)
|...++......++.+|+++........ .-.-.+|+.. +.++..+.++..+++....... ..+ ++.+++.+.
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHH
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHH
Confidence 7777777655666666666554222211 0001237766 9999999999999999988776 544 888899998
Q ss_pred HHcCCCc
Q 002169 493 MATHGFV 499 (957)
Q Consensus 493 ~~t~g~~ 499 (957)
..+.|.-
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 8888764
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-07 Score=97.64 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=78.8
Q ss_pred HHHhcCCCCCCc--ceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCc----------------c-------------
Q 002169 671 AFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPEL----------------F------------- 717 (957)
Q Consensus 671 ~~~~l~~~~~~g--iLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l----------------~------------- 717 (957)
+++++++....| +.|.||+|||||||.++||+.... .-+.+++..+ +
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l 97 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGL 97 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehh
Confidence 344445555555 999999999999999999976421 2233333221 0
Q ss_pred ---------------------------cccccc--hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH-H
Q 002169 718 ---------------------------SKWVGE--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-R 767 (957)
Q Consensus 718 ---------------------------~~~vg~--~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~-~ 767 (957)
.+|..+ ...+.|..+++|....|.||++||+-.-++. .++ .
T Consensus 98 ~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa---------lTR~~ 168 (248)
T COG1116 98 ELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA---------LTREE 168 (248)
T ss_pred hccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH---------HHHHH
Confidence 001111 1122378899999999999999998754432 122 2
Q ss_pred HHHHHHHHHhccccCCcEEEEEecCCCCCCChhhh----------CCCCcceecccCCCC
Q 002169 768 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALL----------RPGRFDRLLYVGPPN 817 (957)
Q Consensus 768 v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLl----------r~gRfd~~i~~~~P~ 817 (957)
+.+.++.. ....+.+|++.||+.++ |+. +|+|....+.++.|.
T Consensus 169 lq~~l~~l----w~~~~~TvllVTHdi~E---Av~LsdRivvl~~~P~~i~~~~~i~l~r 221 (248)
T COG1116 169 LQDELLRL----WEETRKTVLLVTHDVDE---AVYLADRVVVLSNRPGRIGEELEIDLPR 221 (248)
T ss_pred HHHHHHHH----HHhhCCEEEEEeCCHHH---HHhhhCEEEEecCCCcceeeEEecCCCC
Confidence 22333333 33456889999996654 443 556665566666553
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=105.70 Aligned_cols=49 Identities=31% Similarity=0.368 Sum_probs=40.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
-++++.|.++.++.++..+. .+++++|+||||||||++++++++.++..
T Consensus 16 ~~~~viG~~~a~~~l~~a~~--------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAK--------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hHhhccCHHHHHHHHHHHHH--------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 45688999999988887753 23489999999999999999999998654
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-07 Score=98.62 Aligned_cols=170 Identities=21% Similarity=0.203 Sum_probs=113.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc------EEEEeccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------LFTVNGPEVV 366 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------~i~i~~~~l~ 366 (957)
..++++.+.++....+.++.. ...-.+.|+|||||||||+...+.|..+-.+ +.+.+.++-.
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSG------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred chhhhHhcCCchhhHHHHhcc------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 445678888888888777732 2222389999999999999999999887442 1223333321
Q ss_pred ccccchhHHHHHHHHHHHhc-------cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 367 SQNYGESEQALHEVFDSASQ-------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~-------~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
+- + ..+.-...|..+.. ..+..+++||+|++.. ...++|...++.+. .++.|+..+|
T Consensus 106 gi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRviek~t--~n~rF~ii~n 169 (360)
T KOG0990|consen 106 GI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVIEKYT--ANTRFATISN 169 (360)
T ss_pred CC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHHHHhc--cceEEEEecc
Confidence 11 1 11222334554442 2578999999998853 44455666666653 4567778899
Q ss_pred CCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 002169 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSM 493 (957)
Q Consensus 440 ~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~ 493 (957)
++..+.|++++ ||.+ +.+..-+..+....+..+...-.....++....++.
T Consensus 170 ~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r 220 (360)
T KOG0990|consen 170 PPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR 220 (360)
T ss_pred ChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH
Confidence 99999999998 8865 677777777777888877776666656655555444
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-06 Score=99.87 Aligned_cols=179 Identities=27% Similarity=0.369 Sum_probs=115.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEeccccccc---c-------cchh------HHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEVVSQ---N-------YGES------EQALHEVFD 382 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~l~~~---~-------~ge~------e~~i~~vf~ 382 (957)
+..+.+.|-||||||..++.+...+ ...+++||+..+.+. | .|+. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 3467788999999999999998755 346899999876553 1 1111 112222333
Q ss_pred HHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-ccCCCeEEEEecCCCCCchhhhhC--CCCcc-ee
Q 002169 383 SAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIEPALRR--PGRLD-RE 457 (957)
Q Consensus 383 ~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-~~~~~v~vI~ttN~~~~ld~al~r--~gRfd-~~ 457 (957)
... ...++|++|||+|.|+...++ -|.+++|-. ....+.+||+..|..+....-+.. ..|++ .+
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Qd-----------VlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQD-----------VLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHH-----------HHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 111 234789999999999865422 355666554 245678888888886543332221 11433 35
Q ss_pred eeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHhc
Q 002169 458 IEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA--DLAALCNEAALVCLRRYS 519 (957)
Q Consensus 458 I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga--Di~~l~~~A~~~a~rr~~ 519 (957)
|.|.+++.+|..+|+...+.... .+....++-.|+.....+|. -...+|+.|+..|-.+..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV 633 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc
Confidence 89999999999999999988873 33556667677665555543 334578888777765543
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=94.65 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------------cEEEEecccccccccchhHHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV-----------------------NLFTVNGPEVVSQNYGESEQALHEVFDSA 384 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~-----------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a 384 (957)
.+..+||+||.|+||+++|+++|..+-+ .++.+.... .++.+ .-..+|.+.+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 3567999999999999999999986622 123332210 01111 123445554433
Q ss_pred h----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeee
Q 002169 385 S----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 460 (957)
Q Consensus 385 ~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i 460 (957)
. .+...|++||++|.+. ....+.|++.+++ ...++++|.+|+.++.+.|.+++ |.- .+.|
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~ 164 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVV 164 (319)
T ss_pred hhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEeC
Confidence 2 3335799999999884 3456779999998 56779999999999999999999 763 4889
Q ss_pred cCCCHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILHA 474 (957)
Q Consensus 461 ~~P~~~~r~~Il~~ 474 (957)
+.|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999887777754
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-07 Score=93.69 Aligned_cols=106 Identities=27% Similarity=0.455 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC---cEEEEeCCCcccccccchHH
Q 002169 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL---NFLAVKGPELFSKWVGESEK 726 (957)
Q Consensus 650 G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~---~~i~v~~~~l~~~~vg~~~~ 726 (957)
|.....+.+++.+... ......++|+|++||||+++|++|....+. +|+.+++..+-
T Consensus 2 G~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4455555555554321 134567999999999999999999987654 55555544321
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.++++.+..+ +|||+|+|.+ ....+..|+..++... ..++.+|++|..+
T Consensus 62 --~~~l~~a~~g---tL~l~~i~~L-------------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --AELLEQAKGG---TLYLKNIDRL-------------SPEAQRRLLDLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp --HHHHHHCTTS---EEEEECGCCS--------------HHHHHHHHHHHHHCT-TTTSEEEEEECC-
T ss_pred --HHHHHHcCCC---EEEECChHHC-------------CHHHHHHHHHHHHhcC-CCCeEEEEEeCCC
Confidence 4466666444 9999999976 3455566777777543 4467788777644
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-06 Score=89.57 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccccc----
Q 002169 302 SKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVVSQ---- 368 (957)
Q Consensus 302 ~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~~~---- 368 (957)
....+.|.+++..|.. .-..++||+|++|.|||++++.++..-. .+++.+..+.--+.
T Consensus 43 ~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 43 KEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred HHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4455556666555522 2245799999999999999999986542 35666665321110
Q ss_pred ----------c-c-chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEE
Q 002169 369 ----------N-Y-GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIA 436 (957)
Q Consensus 369 ----------~-~-ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ 436 (957)
+ . ......-..+....+..++.+|+|||++.++.... +-..++++.+..+.+.-++.+|+
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~--------~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY--------RKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH--------HHHHHHHHHHHHHhhccCCCeEE
Confidence 0 0 11112222333444556677999999999764321 11334555566555566666666
Q ss_pred ecCCC----CCchhhhhCCCCcceeeeecCCCH-HHHHHHHHHHHcCCCCC----CCh-HHHHHHHHHcCCCcHHHHHHH
Q 002169 437 ATNRP----DSIEPALRRPGRLDREIEIAVPSP-AQRLEILHALLSGMEHS----LLD-SEVEYLSMATHGFVGADLAAL 506 (957)
Q Consensus 437 ttN~~----~~ld~al~r~gRfd~~I~i~~P~~-~~r~~Il~~~l~~~~~~----l~~-~~l~~La~~t~g~~gaDi~~l 506 (957)
+.... =.-|+.+.+ ||+. +.++.... ++...++..+-..+++. +.+ .....+-..+.|.. .++..+
T Consensus 186 vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~l 261 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRL 261 (302)
T ss_pred eccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHH
Confidence 65321 133466666 8865 44444322 23344555544443322 233 33466677777766 568889
Q ss_pred HHHHHHHHHHHhcccccc
Q 002169 507 CNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~~ 524 (957)
+..|+..|++...+.++.
T Consensus 262 l~~aA~~AI~sG~E~It~ 279 (302)
T PF05621_consen 262 LNAAAIAAIRSGEERITR 279 (302)
T ss_pred HHHHHHHHHhcCCceecH
Confidence 999999999877665543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=103.05 Aligned_cols=188 Identities=22% Similarity=0.257 Sum_probs=115.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge 372 (957)
..+.|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~-- 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL-- 206 (445)
T ss_pred cceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH--
Confidence 34566666666655544221 1345679999999999999999998765 45899999987633211
Q ss_pred hHHHHHHHHHH---------------HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------
Q 002169 373 SEQALHEVFDS---------------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------- 428 (957)
Q Consensus 373 ~e~~i~~vf~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------- 428 (957)
-..+|.. .......+|||||++.+. ......|+..++.-. .
T Consensus 207 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ----ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred ----HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence 1111210 011234699999999884 344566777765421 1
Q ss_pred CCCeEEEEecCCCC-------CchhhhhCCCCcceeeeecCCCHHHHHH----HHHHHHc----CC---CCCCChHHHHH
Q 002169 429 TDGVLVIAATNRPD-------SIEPALRRPGRLDREIEIAVPSPAQRLE----ILHALLS----GM---EHSLLDSEVEY 490 (957)
Q Consensus 429 ~~~v~vI~ttN~~~-------~ld~al~r~gRfd~~I~i~~P~~~~r~~----Il~~~l~----~~---~~~l~~~~l~~ 490 (957)
..++.+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++. .+ ...+++..+..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 12578888887531 12222222 332 25677888777764 2333322 22 23568888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
|..+.-.-+.++|+++++.|+..
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHh
Confidence 88877666778999998887654
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-07 Score=92.91 Aligned_cols=113 Identities=20% Similarity=0.371 Sum_probs=78.6
Q ss_pred HHHhcCCCCCCc--ceeeCCCCChhhHHHHHHHHHh--CCcEEEEeCCCccc----------------------c-----
Q 002169 671 AFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEA--GLNFLAVKGPELFS----------------------K----- 719 (957)
Q Consensus 671 ~~~~l~~~~~~g--iLL~GPpGtGKTtlAkaiA~~~--~~~~i~v~~~~l~~----------------------~----- 719 (957)
+++.+++...+| +.++||+|+||||+.|+|...- ...-|.+++..+.. .
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle 96 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence 344444444454 8999999999999999998642 34445555522210 0
Q ss_pred ------------------------------------cccc--hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC
Q 002169 720 ------------------------------------WVGE--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 720 ------------------------------------~vg~--~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~ 761 (957)
|..+ ..++.|..+++|.++.|.|++|||+++-
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSA---------- 166 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA---------- 166 (240)
T ss_pred HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCccc----------
Confidence 1100 1223488899999999999999999964
Q ss_pred CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
...+++.+.|..|..+... +.+.|+.||.+..
T Consensus 167 --LDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F 198 (240)
T COG1126 167 --LDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF 198 (240)
T ss_pred --CCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH
Confidence 3567788888888877655 6889999997754
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.1e-06 Score=96.33 Aligned_cols=220 Identities=21% Similarity=0.246 Sum_probs=138.0
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCC-CC--cceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeCC
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP-PT--GILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGP 714 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~-~~--giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~~ 714 (957)
+-+.+....+|..+++.. +.. .. .+.+.|-||||||.++..+..++ ...|+.||+-
T Consensus 398 LpcRe~E~~~I~~f~~~~-----------i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSF-----------ISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred ccchhHHHHHHHHHHHhh-----------cCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 445566666666555432 222 22 36788999999999999998754 3578999987
Q ss_pred Ccccc----------cccchH------HHHHHHHHHH-HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh
Q 002169 715 ELFSK----------WVGESE------KAVRSLFAKA-RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777 (957)
Q Consensus 715 ~l~~~----------~vg~~~------~~ir~~f~~A-~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld 777 (957)
.+.+. +.|+.. ..+..-|... -...++||+|||+|.|....+ .+ |.+.++
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q----------dV---lYn~fd 533 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ----------DV---LYNIFD 533 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH----------HH---HHHHhc
Confidence 76543 122211 1112222211 124578999999999874331 12 222222
Q ss_pred cc-ccCCcEEEEEecCCCCCCChhhhC-C-CCcc-eecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCC--c
Q 002169 778 GL-HQRVNVTVIAATNRPDKIDPALLR-P-GRFD-RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGC--T 851 (957)
Q Consensus 778 ~~-~~~~~v~VI~aTN~~~~id~aLlr-~-gRfd-~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~--s 851 (957)
=. .+...++||++.|.++....-|.. . .|++ ..|.|.+++..+..+|+...+.....-.....+-+|+.-... +
T Consensus 534 Wpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 534 WPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred CCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 11 245578999999988764333321 0 1332 467899999999999999998876333333333344433323 3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHhhCCC
Q 002169 852 GADISLICREAAISAIEENL-----DASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~~-----~~~~It~~d~~~al~~~~p~ 891 (957)
.+....+|++|.-.|-.+.. ....|++.|+.+|+..+..+
T Consensus 614 aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 57778889999988877654 12468999999999998765
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=96.81 Aligned_cols=132 Identities=20% Similarity=0.355 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC-------------------------cEEEEecccc---cccc-cchhHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------------------NLFTVNGPEV---VSQN-YGESEQAL 377 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~-------------------------~~i~i~~~~l---~~~~-~ge~e~~i 377 (957)
+.+..+||+||+|+|||++|+.+|+.+.+ .++.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44667999999999999999999987632 2333432110 0000 00123456
Q ss_pred HHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCC
Q 002169 378 HEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGR 453 (957)
Q Consensus 378 ~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gR 453 (957)
|.+.+.+.. ....|++||+++.+. ....+.|++.++... .++++|++|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 666665542 335699999998873 345567888888763 457788899999999999998 6
Q ss_pred cceeeeecCCCHHHHHHHHHH
Q 002169 454 LDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~ 474 (957)
. ..+.|+.|+.++..+.+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 5 3488999999887777653
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=8e-06 Score=96.97 Aligned_cols=203 Identities=17% Similarity=0.249 Sum_probs=113.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc---
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF--- 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~--- 717 (957)
.+.+.+|+.-.++-.++++.+++.. + .+..+.+-+||+|||||||||++++||++++..+.+...+...
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~------~--~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEM------F--SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHH------h--ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 4445566666666666777666521 1 1223344578899999999999999999999988876433221
Q ss_pred ----cccccc---hH------HHHHHH-HHHHHh-----------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 718 ----SKWVGE---SE------KAVRSL-FAKARA-----------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 718 ----~~~vg~---~~------~~ir~~-f~~A~~-----------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
..|.+. .. .....+ +..++. ..+.||+|||+=.+... ...+.-+.|
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~---------~~~~f~~~L 156 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR---------DTSRFREAL 156 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch---------hHHHHHHHH
Confidence 011111 00 111122 111121 24679999998754321 113444444
Q ss_pred HHHHhccccCC-cEEEEEe-c------CCC-C-------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----
Q 002169 773 LVELDGLHQRV-NVTVIAA-T------NRP-D-------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI---- 832 (957)
Q Consensus 773 L~~ld~~~~~~-~v~VI~a-T------N~~-~-------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~---- 832 (957)
...+..- .. .+++|++ + |.. . .+.+.++.-.++ ..|.|.+-...-..+.|+..+...
T Consensus 157 ~~~l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 157 RQYLRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 4444422 22 6666666 1 111 1 345666654444 477887777766655555554432
Q ss_pred -C--CCCc-cc-HHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 002169 833 -P--CSSD-VN-IRELACLSEGCTGADISLICREAAISAI 867 (957)
Q Consensus 833 -~--~~~~-~~-l~~la~~t~g~sg~dl~~l~~eA~~~a~ 867 (957)
+ ...+ .. ++.++..+.| ||+.+++..-+.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 1 1111 22 6677777766 99999987777766
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-07 Score=99.09 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccc-hhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG-ESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~g-e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+.+++|+||||||||+||.+++.++ |..++.++..+++..... ........+++.. ..+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 46789999999999999999999754 677888888777664321 1111223344433 24579999999876422
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
......|+++++..... ..+|+|||.+
T Consensus 183 ---------~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 183 ---------QAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred ---------HHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 12234566666654332 3577788764
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=94.46 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=61.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchH--HHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESE--KAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~--~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
..+++|+||||||||.||.|||+++ +..++.+..++++........ .....+++.. ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 3679999999999999999999887 566777777776554221100 0112233333 3456999999975421
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.+.....|...++..... ..-+|++||..
T Consensus 178 ----------s~~~~~~l~~ii~~R~~~-~~ptiitSNl~ 206 (248)
T PRK12377 178 ----------TKNEQVVLNQIIDRRTAS-MRSVGMLTNLN 206 (248)
T ss_pred ----------CHHHHHHHHHHHHHHHhc-CCCEEEEcCCC
Confidence 122233455555543222 34467889955
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.5e-07 Score=96.78 Aligned_cols=104 Identities=18% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccc-hhHHHHHHHHHHHhccCCeEEEEcCccccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG-ESEQALHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~g-e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
+..+.+++|+||||||||+|+.+++... |..+..+++.++...... .....+..+++.. ...+++++|||++.+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 5567899999999999999999997653 667777777776543211 1112244555543 2456799999997653
Q ss_pred cCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 402 PARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 402 ~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
..+ .....|+.+++.....+ .+|+|||.+
T Consensus 178 ~~~---------~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 178 FSQ---------EEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred CCh---------HHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 221 22234666665543332 367788764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-07 Score=91.62 Aligned_cols=107 Identities=25% Similarity=0.417 Sum_probs=69.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEeccccccc-cc-----------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQ-NY----------------------------- 370 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~-~~----------------------------- 370 (957)
++.+..++-+.++||+|+|||||.|++...-. .--+.+++..+... ..
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 36678899999999999999999999985431 22345555322111 00
Q ss_pred ---------chhHHHH--------------------------HHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 371 ---------GESEQAL--------------------------HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 371 ---------ge~e~~i--------------------------~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
.+.+... |-.+.+|..+.|.|+++||.-+ ..+..+
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTS----------ALDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS----------ALDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcc----------cCCHHH
Confidence 0111111 2222357788899999999533 346678
Q ss_pred HHHHHHHhhccccCCCeEEEEecCC
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
+.+.+..|..+... +.+.|+.|+.
T Consensus 172 v~EVL~vm~~LA~e-GmTMivVTHE 195 (240)
T COG1126 172 VGEVLDVMKDLAEE-GMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEech
Confidence 88899999888655 4666667743
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=94.70 Aligned_cols=201 Identities=15% Similarity=0.249 Sum_probs=112.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc-cc----
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV-VS---- 367 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l-~~---- 367 (957)
.+.++|.-..+-+++++.++.... .+..+.+-+||+|||||||||++++||+++|..+.+...+.. ..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 345567666777777777765331 233345677889999999999999999999998877543222 10
Q ss_pred --cccch---hH---HHHHHHHH-----HHhc-----------cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 368 --QNYGE---SE---QALHEVFD-----SASQ-----------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 368 --~~~ge---~e---~~i~~vf~-----~a~~-----------~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
.+.+. .+ ... ..|+ .+.. ..+.||+|||+-.+.... ..++...|..++
T Consensus 89 ~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~l 160 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFREALRQYL 160 (519)
T ss_pred cccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHHHHHHHH
Confidence 01111 00 111 1122 1111 246799999986443211 144444455555
Q ss_pred hccccCC-CeEEEEec-C------CCC--------CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC-----C-C
Q 002169 424 DGVCRTD-GVLVIAAT-N------RPD--------SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM-----E-H 481 (957)
Q Consensus 424 d~l~~~~-~v~vI~tt-N------~~~--------~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~-----~-~ 481 (957)
.. ... .+++|++- . ... .+++.+....++. .|.|.+-...-....|+..+... + .
T Consensus 161 ~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 161 RS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred Hc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 43 222 55666661 1 111 2445555543443 48888877776666666655432 1 1
Q ss_pred CCC--hHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 482 SLL--DSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 482 ~l~--~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
..+ ...++.++..+. +||+..+..--+.+.
T Consensus 238 ~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 112 234788887655 488877765555554
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.2e-06 Score=92.51 Aligned_cols=173 Identities=21% Similarity=0.293 Sum_probs=107.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc----------
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP---------- 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~---------- 363 (957)
.|.-+.|.+..+..|---. -.+.-.++|+-|+.||||||++|+||..+.-.-+.+.|.
T Consensus 15 pf~aivGqd~lk~aL~l~a------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNA------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhh------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 3456789887666542211 112245899999999999999999999885433222320
Q ss_pred ----------------------cccccccchhHH-HHHHH-HHHHh-------------ccCCeEEEEcCccccccCCcC
Q 002169 364 ----------------------EVVSQNYGESEQ-ALHEV-FDSAS-------------QSAPAVVFIDELDAIAPARKD 406 (957)
Q Consensus 364 ----------------------~l~~~~~ge~e~-~i~~v-f~~a~-------------~~~p~IL~IDEiD~l~~~~~~ 406 (957)
.++.--.|.++. .+..+ .+.|. .....||++||+..|
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL------ 156 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL------ 156 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc------
Confidence 011111233333 11111 11111 112359999999766
Q ss_pred CCchHHHHHHHHHHHHhhcc-----------ccCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCC-CHHHHHHHHH
Q 002169 407 GGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVP-SPAQRLEILH 473 (957)
Q Consensus 407 ~~~~~~~~i~~~Ll~~ld~l-----------~~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~ 473 (957)
...++..|++.+..- .-.-++++|+|+|+.+ +|-|.|+. ||...+.+..| +.++|.+|.+
T Consensus 157 -----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 157 -----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred -----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHH
Confidence 456778888877651 2234689999999864 67788888 99999988776 6788999998
Q ss_pred HHHcCCCCCCChHHHHHHHH
Q 002169 474 ALLSGMEHSLLDSEVEYLSM 493 (957)
Q Consensus 474 ~~l~~~~~~l~~~~l~~La~ 493 (957)
..+.- . ..++..++.++.
T Consensus 230 r~~~f-~-~~Pe~f~~~~~~ 247 (423)
T COG1239 230 RRLAF-E-AVPEAFLEKYAD 247 (423)
T ss_pred HHHHh-h-cCcHHHHHHHHH
Confidence 76644 2 224444554443
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=83.66 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD 406 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~ 406 (957)
++.++|+||.||||||+++.++..+. .+++.++..+.........+ +...+.......+.+|||||++.+-
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 45689999999999999999998876 77888887765442211111 2233322222356799999998762
Q ss_pred CCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh--hCCCCcceeeeecCCCHHH
Q 002169 407 GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL--RRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 407 ~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al--~r~gRfd~~I~i~~P~~~~ 467 (957)
.+...+..+.|. ..+..+|+|+.....+.... .-.||.. .+++.+.+..|
T Consensus 75 -------~~~~~lk~l~d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -------DWEDALKFLVDN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------cHHHHHHHHHHh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 122223333332 13456666665443332211 1235764 46777766554
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=86.24 Aligned_cols=88 Identities=25% Similarity=0.454 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~---~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
....+|+|+|++||||+++|++++...+. +|+.++|.++. .++++.+ .+..|||+|+|.+.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC--
Confidence 34678999999999999999999987653 45555665532 3455555 45599999999883
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
......|+..++... ..++.+|+++..
T Consensus 83 ---------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 83 ---------PEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp ---------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred ---------HHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 344556666666543 455677777654
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-06 Score=98.80 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEeccccccc--------------------------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQ-------------------------------- 368 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~-------------------------------- 368 (957)
|++++.-+||+|+||+|||+++..++... |.+.++++..+-...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 78899999999999999999999765321 445555543211000
Q ss_pred c--c--chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 369 N--Y--GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 369 ~--~--ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
+ . .+.+..+..+.+.+....|..++||-+..+...-+. ...+...+..++..+. ..++++|++++...
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~-----~~~~r~~l~~L~~~Lk-~~g~TvLlt~~~~~ 178 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSN-----EAVVRRELRRLFAWLK-QKGVTAVITGERGD 178 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccC-----HHHHHHHHHHHHHHHH-hCCCEEEEEECCcc
Confidence 0 0 011223334444455667889999998876432111 1122334444444443 33667777776544
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-07 Score=102.16 Aligned_cols=110 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEeccccccc-------------c------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQ-------------N------------------ 369 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~~-------------~------------------ 369 (957)
++.+.+++.+.|.||+||||||+.|+||+.... --+.+++.++.+- |
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 467888999999999999999999999975421 1234443322211 0
Q ss_pred ----c-chhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHH
Q 002169 370 ----Y-GESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVAT 418 (957)
Q Consensus 370 ----~-ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~ 418 (957)
. .+..+++.++++ +|....|.+|++||- -+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP----------lSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP----------LSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc----------ccchhHHHHHH
Confidence 0 012223444333 456677999999992 12345667777
Q ss_pred HHHHhhccccCCCeEEEEecCCCC
Q 002169 419 LLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 419 Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
+...+..+...-++.+|..|++.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 777888877777899999998754
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.9e-07 Score=93.04 Aligned_cols=101 Identities=23% Similarity=0.388 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch-hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge-~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+.+++|+||||||||+||.+++.++ |..+..++.++++...... ........++... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~-- 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE-- 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee--
Confidence 457899999999999999999999765 7788888888776653211 0111223344433 3469999998532
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.........|.++++.-... + ..|+|||.
T Consensus 121 -------~~~~~~~~~l~~ii~~R~~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 121 -------PLSEWEAELLFEIIDERYER-K-PTIITSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred -------eecccccccchhhhhHhhcc-c-CeEeeCCC
Confidence 12233445567777765432 3 46668875
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-05 Score=89.07 Aligned_cols=201 Identities=20% Similarity=0.275 Sum_probs=127.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEecccccccc-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVSQN- 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~~~~- 369 (957)
..+.|-+.++..+++++..+ +....+..+.+.|-||||||.+..-+-.... ...+++||.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 35789999999999997666 4445677899999999999998886654332 245889987643320
Q ss_pred -----c---------chhHHHHHHHHHH-Hhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeE
Q 002169 370 -----Y---------GESEQALHEVFDS-ASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 433 (957)
Q Consensus 370 -----~---------ge~e~~i~~vf~~-a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~ 433 (957)
. +..+......|+. ..+. .+-|+++||+|.|....+. ++-+|..+ .. ....+++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~--------vLy~lFew-p~-lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT--------VLYTLFEW-PK-LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc--------eeeeehhc-cc-CCcceee
Confidence 0 0111222233332 2222 3679999999999844322 22222222 11 2345789
Q ss_pred EEEecCCCCCchhhhhC----CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHcCCCcHH--HHHHH
Q 002169 434 VIAATNRPDSIEPALRR----PGRLDREIEIAVPSPAQRLEILHALLSGMEHSL-LDSEVEYLSMATHGFVGA--DLAAL 506 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r----~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l-~~~~l~~La~~t~g~~ga--Di~~l 506 (957)
+|+.+|..|.-|..|-| .+--...+.|++++.++..+|++..+....... -+..++..|+...|-+|. -.-.+
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 99999998766644432 111233589999999999999999988765432 345788888888887763 23334
Q ss_pred HHHHHHHH
Q 002169 507 CNEAALVC 514 (957)
Q Consensus 507 ~~~A~~~a 514 (957)
|+.|...+
T Consensus 372 ~R~aiEI~ 379 (529)
T KOG2227|consen 372 CRRAIEIA 379 (529)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8e-07 Score=96.52 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch-hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge-~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+.+++|+||||||||+||.+++.++ |..+..++..+++...... ....+...+... ..+.+|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 346789999999999999999998765 5666666666554432110 011122223322 2467999999987632
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
. ......|..+++..... ..+|++||.+
T Consensus 174 ~---------~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 174 E---------PEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred C---------HHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 1 12223455555543222 2477788765
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-06 Score=95.32 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=63.0
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc-hHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~-~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||.||.+++.++ |..++.++.++++...... ........+.... .+.+|+|||++....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC-
Confidence 35679999999999999999999764 6677777777766543211 1122233444433 456999999986521
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.......|...++..... .-+|++||.+
T Consensus 182 ----------~~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 182 ----------DQAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred ----------CHHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 122233455555543322 2478888865
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=83.35 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..++|+||+|||||||.|++|...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4678899999999999999999999999765
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=89.32 Aligned_cols=179 Identities=24% Similarity=0.345 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-cE--EEEeCCCccc-----c-
Q 002169 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NF--LAVKGPELFS-----K- 719 (957)
Q Consensus 649 ~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-~~--i~v~~~~l~~-----~- 719 (957)
+|.++..+.|.+.+.. .+...++++||.|+|||++++.+...... .+ +.+....... .
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4556666666655431 23567999999999999999999988732 11 1111100000 0
Q ss_pred -----------------------------cccchHHHHHHHHHHHHhCC-CeEEEEeCCchhh-hhcCCCCCCCcchHHH
Q 002169 720 -----------------------------WVGESEKAVRSLFAKARANA-PSIIFFDEIDGLA-AIRGKESDGVSVSDRV 768 (957)
Q Consensus 720 -----------------------------~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~-~~r~~~~~~~~~~~~v 768 (957)
........+..+++...... ..||+|||++.+. ... .....
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~ 140 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDF 140 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHH
Confidence 00112344566666655543 3799999999886 111 23556
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCC------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC-C-CCcccH
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPD------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-C-SSDVNI 840 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~-~-~~~~~l 840 (957)
+..+...++......++.+|+++.... .-...+. +|+.. +++++.+.++..++++..+++.. + ..+.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 666777777644455555555443221 1122333 37876 99999999999999999887761 1 246678
Q ss_pred HHHHHHccCCc
Q 002169 841 RELACLSEGCT 851 (957)
Q Consensus 841 ~~la~~t~g~s 851 (957)
+++...+.|+.
T Consensus 218 ~~i~~~~gG~P 228 (234)
T PF01637_consen 218 EEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHhCCCH
Confidence 88888888843
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-06 Score=91.82 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+.+++|+||||+|||+||-|+++++ |..+..+..++++......... .....+... -....+|+|||+...-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~~- 181 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEPF- 181 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCccC-
Confidence 58899999999999999999999876 6778888888877653211111 111111111 12346999999865421
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
+......++.++......... |.|+|.+
T Consensus 182 --------~~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 182 --------SQEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred --------CHHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 122223344455544333333 8888864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=93.64 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|.++++|....|.+|++||+....+ ......+...|..+... +.+|+++||+.+.+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD------------~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVD------------VAGQKEIYDLLKELRQE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCC------------HHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHh
Confidence 8889999999999999999985543 23333455556655556 88999999988753
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=93.27 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHH---------------HhccCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDS---------------ASQSAP 389 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~---------------a~~~~p 389 (957)
...+++++|++||||+++|+++.... +.+|+.++|..+.... .-..+|.. ......
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 35689999999999999999998764 4689999998763321 01111110 111224
Q ss_pred eEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------CCCeEEEEecCCCCCchhhhhCCCCcce----
Q 002169 390 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDGVLVIAATNRPDSIEPALRRPGRLDR---- 456 (957)
Q Consensus 390 ~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~-------~~~v~vI~ttN~~~~ld~al~r~gRfd~---- 456 (957)
.+|||||+|.+.+ .+...|+..++.-. . ..++.+|++|+.. +. .+.+.|+|..
T Consensus 239 gtl~ld~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--l~-~~~~~g~~~~~l~~ 304 (457)
T PRK11361 239 GTLLLDEIGEMPL-----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD--LQ-AMVKEGTFREDLFY 304 (457)
T ss_pred CEEEEechhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC--HH-HHHHcCCchHHHHH
Confidence 5999999998843 34556777765421 1 1247889998753 22 2233344433
Q ss_pred ---eeeecCCCHHHHHH----HHHHHHcC------CC-CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 457 ---EIEIAVPSPAQRLE----ILHALLSG------ME-HSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 457 ---~I~i~~P~~~~r~~----Il~~~l~~------~~-~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+.+..|...+|.+ +.+.++.+ .. ..+++..++.|..+.-.-+.++++++++.|...
T Consensus 305 ~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 36677888777754 22222221 11 356788888888776666778999888887654
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-06 Score=95.28 Aligned_cols=101 Identities=17% Similarity=0.333 Sum_probs=58.0
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc-hHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~-~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
.+.+++|+||||||||.+|.+|+.++ |..+..+...+++...... ....+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 35679999999999999999998875 4555445554443322110 011122223332 3457999999986521
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.......+...++..... ..+|++||.+
T Consensus 174 ----------~~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 174 ----------EPEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred ----------CHHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 122223344444432222 2477888866
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=101.08 Aligned_cols=143 Identities=24% Similarity=0.300 Sum_probs=87.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEE------ecc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTV------NGP 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~----~~i~i------~~~ 363 (957)
++.++.|....++.+ .+.+..+.+++|+||||||||++++.+++.+.. ..+++ .+.
T Consensus 189 d~~~v~Gq~~~~~al--------------~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGL--------------EITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhh--------------heeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 556667766544432 133456789999999999999999999976632 11211 111
Q ss_pred -----cc-----cccc--------cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 364 -----EV-----VSQN--------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 364 -----~l-----~~~~--------~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
.+ ..-. +|.....-...+..|.. .+||+||++.+ ...++..|++.|+.
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~LE~ 320 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPIES 320 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHHHc
Confidence 01 0000 01100001123444433 49999999765 34566677777744
Q ss_pred cc-----------cCCCeEEEEecCCCC---------------------CchhhhhCCCCcceeeeecCCCHH
Q 002169 426 VC-----------RTDGVLVIAATNRPD---------------------SIEPALRRPGRLDREIEIAVPSPA 466 (957)
Q Consensus 426 l~-----------~~~~v~vI~ttN~~~---------------------~ld~al~r~gRfd~~I~i~~P~~~ 466 (957)
-. ...++.+|+|+|+.. .++.+++. |||-.+.++.|+.+
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 21 134689999999853 36667777 99999999998876
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-06 Score=92.15 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=63.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||.||-|||.++ |..+..+..++++......... ....-+... -....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~-- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP-- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc--
Confidence 57889999999999999999999886 6677888888887653322111 111112221 1233599999997542
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.....-+.+++.+......... |++||.+..
T Consensus 181 ---------~~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~ 211 (254)
T COG1484 181 ---------FSQEEADLLFQLISRRYESRSL--IITSNLSFG 211 (254)
T ss_pred ---------CCHHHHHHHHHHHHHHHhhccc--eeecCCChH
Confidence 1222223344444443333233 889997643
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=91.75 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccc-ccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDA-IAP 402 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~-l~~ 402 (957)
.+.+++|+||||||||+|+.++|+++ +..++.+...+++....... ......++.. ...++|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 46789999999999999999999876 45667777655544321111 1112222332 2457999999943 211
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.. .........|..+++.....+. .+|+|||.
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~~~~k-~tIitsn~ 224 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRYLNHK-PILISSEL 224 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 11 1112223456666665433333 35667765
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=91.00 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccch---HHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES---EKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~---~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
.+++|+|+||||||+||.+||.++ +..++.+..++++....... ......+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 66777787777765432211 112234444433 466999999986421
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
......++.++ ++... .....+|++||..
T Consensus 177 -------s~~~~~~l~~I---i~~Ry-~~~~~tiitSNl~ 205 (244)
T PRK07952 177 -------SRYEKVIINQI---VDRRS-SSKRPTGMLTNSN 205 (244)
T ss_pred -------CHHHHHHHHHH---HHHHH-hCCCCEEEeCCCC
Confidence 11223333333 33322 2234578889854
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-05 Score=86.28 Aligned_cols=225 Identities=20% Similarity=0.202 Sum_probs=142.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CC-cEEEEeCCCccc--
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GL-NFLAVKGPELFS-- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~-~~i~v~~~~l~~-- 718 (957)
+.+.|.+..+..+++++... +....+..+-+.|-||||||.+..-+-... .. ..+.+++..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45678888888888877543 334566779999999999999888554332 22 447788765421
Q ss_pred ----c----c----cc-chHHHHHHHHHHH-HhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCC
Q 002169 719 ----K----W----VG-ESEKAVRSLFAKA-RANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 783 (957)
Q Consensus 719 ----~----~----vg-~~~~~ir~~f~~A-~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 783 (957)
+ + ++ ..+......|..- .+.. +-++++||+|.|...... ++-.+ -+...+ ...
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------vLy~l-Fewp~l-p~s 288 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------VLYTL-FEWPKL-PNS 288 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------eeeee-hhcccC-Ccc
Confidence 1 1 11 1222333444432 3333 568999999998733211 11111 122222 345
Q ss_pred cEEEEEecCCCCCCChhhhC----CCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHccCCcH--HHH
Q 002169 784 NVTVIAATNRPDKIDPALLR----PGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV--NIRELACLSEGCTG--ADI 855 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr----~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~--~l~~la~~t~g~sg--~dl 855 (957)
.+++|+..|-.+.-|..|.| -+--.+++.|++++.++..+|++..+...+..... .++..|+...|.|| |.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 78888999988776655442 11224589999999999999999999887766444 36677888888776 455
Q ss_pred HHHHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHhhCCC
Q 002169 856 SLICREAAISAIEENLD--------------ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~--------------~~~It~~d~~~al~~~~p~ 891 (957)
-.+|+.|.-++-.+... ...|..+|+..++.++...
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 56788777776554321 1346678888777665433
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=94.99 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=63.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccch-HHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
..+|++|+||+|||||.||.|||+++ |.....+..++++....... .......++..+ ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 45789999999999999999999987 67777777777655432211 112234444433 34599999997431
Q ss_pred cCCCCCCCcchHHHHHHHHHHH-hccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVEL-DGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~l-d~~~~~~~v~VI~aTN~~ 794 (957)
.+......++..+ +... ..+..+|+|||.+
T Consensus 231 ---------~s~~~~~~ll~~Il~~R~-~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ---------MSSWVRDEVLGVILQYRM-QEELPTFFTSNFD 261 (306)
T ss_pred ---------ccHHHHHHHHHHHHHHHH-HCCCeEEEECCCC
Confidence 2223333344433 3211 1245688899955
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=94.30 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch---hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE---SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge---~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++|+||+|||||+||.++|+++ |..++.++..+++...... ........++... ..++|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999876 6778888887776543110 0011111233332 346999999865421
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.......|+.+++.....+ ..+|+|||.
T Consensus 261 ---------t~~~~~~Lf~iin~R~~~~-k~tIiTSNl 288 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRLLRQ-KKMIISTNL 288 (329)
T ss_pred ---------CHHHHHHHHHHHHHHHHCC-CCEEEECCC
Confidence 1233456777777653333 345667765
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=93.06 Aligned_cols=102 Identities=22% Similarity=0.349 Sum_probs=62.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc-hHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~-~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||+||.+|+... |..+..++..++...+... ....+..++... ...+.+|+|||++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~- 178 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF- 178 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC-
Confidence 45679999999999999999997664 5566666666665332211 111233445443 24567999999975421
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.....+.|+..++...... .+|+|||.+
T Consensus 179 ----------~~~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 179 ----------SQEEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred ----------ChHHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 1222234555555433332 367788865
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=86.01 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=69.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc--------ccc-----hhHHHHHHHHHHHhcc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ--------NYG-----ESEQALHEVFDSASQS 387 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~--------~~g-----e~e~~i~~vf~~a~~~ 387 (957)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++... .++ ...++-+-.+..|...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3678899999999999999999999999876321 244444332210 010 1112334456677778
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
.|.++++||-..- .+......+.+.+..+... +..+|++|++.+.+.
T Consensus 100 ~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAA----------LTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcC----------CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 8999999994321 2233334455555554333 567788887766554
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-06 Score=85.47 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|.+..|.||++||+.+-++. .+..-+.+|+.+|. .+.+||..||.+..
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDP---------IsT~kIEeLi~eLk-----~~yTIviVTHnmqQ 210 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDP---------ISTLKIEELITELK-----KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCc---------hhHHHHHHHHHHHH-----hccEEEEEeCCHHH
Confidence 78899999999999999999976543 23344566777765 36778888887754
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-06 Score=94.16 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchh-HHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES-EQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~-e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+++++|+||+|||||+|+.++|+++ |..+..+..++++....... .......++... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 46899999999999999999999887 67777777777655432110 112233444433 45699999985431
Q ss_pred CcCCCchHHHHHHHHHHHHh-hccccCCCeEEEEecCCC
Q 002169 404 RKDGGEELSQRMVATLLNLM-DGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~l-d~l~~~~~v~vI~ttN~~ 441 (957)
.+......++..+ +.- -..+...|+|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R-~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYR-MQEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHH-HHCCCeEEEECCCC
Confidence 1222233344433 321 12345678888754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-06 Score=94.91 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++-.-|.|.+|+|||||+|.+++..
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~ 58 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSGVY 58 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhCcc
Confidence 4778899999999999999999999999654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.6e-06 Score=92.20 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
.+++-+-|.||+|+||||.++.+|+++.-
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~P 126 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKP 126 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCcccc
Confidence 35667789999999999999999988743
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=93.68 Aligned_cols=189 Identities=21% Similarity=0.254 Sum_probs=115.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge 372 (957)
.++.|-......+.+.+... .....+|+++|++|||||++|+++.... +.+|+.++|..+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~--- 204 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL--- 204 (469)
T ss_pred ccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH---
Confidence 45666666555555543211 1346679999999999999999999875 4689999998763221
Q ss_pred hHHHHHHHHHHH---------------hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------
Q 002169 373 SEQALHEVFDSA---------------SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------- 428 (957)
Q Consensus 373 ~e~~i~~vf~~a---------------~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------- 428 (957)
.-..+|... .......|||||+|.+. ......|+..++.-. .
T Consensus 205 ---~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 ---IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred ---HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 111122110 11124589999999884 334456777765421 1
Q ss_pred CCCeEEEEecCCCC-------CchhhhhCCCCcceeeeecCCCHHHHHH----HHHHHHc----CCC---CCCChHHHHH
Q 002169 429 TDGVLVIAATNRPD-------SIEPALRRPGRLDREIEIAVPSPAQRLE----ILHALLS----GME---HSLLDSEVEY 490 (957)
Q Consensus 429 ~~~v~vI~ttN~~~-------~ld~al~r~gRfd~~I~i~~P~~~~r~~----Il~~~l~----~~~---~~l~~~~l~~ 490 (957)
..++.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++.++. ..+ ..+++..+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 12468888887531 22233333 442 25666776666643 3333332 221 2467788888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
|..+.-.-+.++|+++++.+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC
Confidence 888776677889999998876543
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-06 Score=84.87 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCccc--------cccc-----chHHHHHHHHHHHHhCCC
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFS--------KWVG-----ESEKAVRSLFAKARANAP 740 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~--------~~vg-----~~~~~ir~~f~~A~~~~p 740 (957)
.+.+...+.|.||+|+|||||.++|++... ..-+.+++.++.. ..++ ...+..|..+.+|....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 345566699999999999999999998753 2234444422211 1111 123455778899999999
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+|++||+.+-++.. ..+.+.+++.++. .. +..+|++||+++.+
T Consensus 102 ~illlDEP~~~LD~~---------~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 102 RLLILDEPTAALTPA---------EVERLFKVIRRLR---AQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CEEEEECCCcCCCHH---------HHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 999999998654322 2333333444432 22 56788899987643
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-06 Score=86.99 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=67.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccc---------------------------cchh
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQN---------------------------YGES 373 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~---------------------------~ge~ 373 (957)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++.... ..+.
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4667899999999999999999999999876321 2445544332100 0000
Q ss_pred --HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 374 --EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 374 --e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
-++-+-.+..+....|.++++||--.- .+......+.+.+..+....+..+|++|+.++.+.
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 011222233556678999999994221 12233344555555553333567888888776554
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=81.63 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=67.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
+-++|+||.||||||+++.++.... .+++.++..+.......... +...+.......+.+|||||++.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 4589999999999999999998876 77778877665332111111 22222222222567999999997621
Q ss_pred CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh--hhhCCCCcceecccCCCCHHH
Q 002169 759 SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP--ALLRPGRFDRLLYVGPPNETD 820 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~--aLlr~gRfd~~i~~~~P~~~e 820 (957)
....+-...|. ..+..||+++.....+.. +-.-+||.. .+.+.+.+..|
T Consensus 76 ---------~~~~lk~l~d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ---------WEDALKFLVDN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ---------HHHHHHHHHHh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 11122222231 124556666554433311 111236864 66777776654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-06 Score=86.65 Aligned_cols=113 Identities=24% Similarity=0.364 Sum_probs=76.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc--------------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ-------------------------------- 368 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~-------------------------------- 368 (957)
++.+.+++.+-|+|++|||||||+|++|+..... -+.+++..+..+
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 4678899999999999999999999999765321 133333211110
Q ss_pred ------ccchhHHHHHHHHH---------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 369 ------NYGESEQALHEVFD---------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 369 ------~~ge~e~~i~~vf~---------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
..++.++++.++++ +|..-.|.+|++||.- +..+-.+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt----------SaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT----------SALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch----------hhhcHHH
Confidence 01122333444443 4556679999999943 2345667
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
.+++++++..+.+..+..+|+.++....+.
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~ 206 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLALVE 206 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHHHH
Confidence 888999999888888889999998765443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-06 Score=87.41 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|.+..|.|||+||+++.++. ....++++|+..+.. .-+.++|+.||+.+.+
T Consensus 153 RvaLARAialdPell~~DEPtsGLDP---------I~a~~~~~LI~~L~~---~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDP---------ISAGVIDELIRELND---ALGLTVIMVTHDLDSL 209 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCc---------chHHHHHHHHHHHHH---hhCCEEEEEECChHHH
Confidence 77899999999999999999976543 345566667666653 3478899999987653
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.1e-06 Score=93.44 Aligned_cols=101 Identities=18% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc---hHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE---SEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~---~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
..+++|+||+|||||.||.|||+++ +..++.+..++++...... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC-
Confidence 3789999999999999999999986 6677788877775543210 0111111233333 34599999997542
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
......+.|...++..... +..+|++||.+
T Consensus 260 ----------~t~~~~~~Lf~iin~R~~~-~k~tIiTSNl~ 289 (329)
T PRK06835 260 ----------ITEFSKSELFNLINKRLLR-QKKMIISTNLS 289 (329)
T ss_pred ----------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 1233345566666544332 23477888854
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.6e-06 Score=86.45 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCc--ccccc-cchHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPEL--FSKWV-GESEKAVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l--~~~~v-g~~~~~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
+.+..-+.|.||+|+|||||+++|++... ..-+.+++..+ ..... =...+..|..+.+|....|.++++||+.+-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 34555689999999999999999998752 22344433211 00110 112345577788888899999999999865
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 752 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 752 ~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++. .....+...+.......+..||++||+.+.+
T Consensus 102 LD~------------~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 102 LDI------------EQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred CCH------------HHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 533 2222333333333223336788999987653
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-06 Score=93.89 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..++.+.++.|.||++||+.+..+.. ....++..+..+....+.++|.+||+.+.+
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~------------~~~~l~~~l~~L~~~~~~tii~~tHd~~~~ 202 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPK------------GRRELLELLKKLKEEGGKTIIIVTHDLELV 202 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHH------------HHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence 677888899999999999999876543 223455555555555567899999988764
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.6e-06 Score=90.10 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCch-hhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDG-LAA 753 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~-l~~ 753 (957)
...+++|+||||||||.||.|||+++ +..++.+...+++....... ......++.. ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 45679999999999999999999875 45566666555543321111 1112222332 3356999999953 111
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
. ..........|...++..... +..+|++||.+
T Consensus 193 ~-------e~~t~~~~~~lf~iin~R~~~-~k~tIitsn~~ 225 (266)
T PRK06921 193 K-------PRATEWQIEQMYSVLNYRYLN-HKPILISSELT 225 (266)
T ss_pred C-------ccCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 0 011222233455555443322 23367788854
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-06 Score=83.64 Aligned_cols=118 Identities=23% Similarity=0.433 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCCCc--ceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCc------------------------ccc-
Q 002169 669 QEAFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPEL------------------------FSK- 719 (957)
Q Consensus 669 ~~~~~~l~~~~~~g--iLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l------------------------~~~- 719 (957)
+++++++.+..++| +.+.||+|.||||+.|.|..+... .-+.+++-++ +..
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~ 94 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence 55666666666666 889999999999999999876421 1122222111 000
Q ss_pred -----------------------------cccch------------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 720 -----------------------------WVGES------------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 720 -----------------------------~vg~~------------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
|+|-. .++.|..+++|..+.|.+|+-||++.=
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGN------- 167 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGN------- 167 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCC-------
Confidence 12211 122378899999999999999999832
Q ss_pred CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 759 SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
.....-.++++.++.+. ..+.+|++|||+.+.++.
T Consensus 168 -----LDp~~s~~im~lfeein-r~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 168 -----LDPDLSWEIMRLFEEIN-RLGTTVLMATHDLELVNR 202 (223)
T ss_pred -----CChHHHHHHHHHHHHHh-hcCcEEEEEeccHHHHHh
Confidence 23333444555555543 337899999997765543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-06 Score=90.87 Aligned_cols=114 Identities=22% Similarity=0.358 Sum_probs=71.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc--------------------------------c
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS--------------------------------Q 368 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~--------------------------------~ 368 (957)
++.+++++.+.|.||+|||||||.|++++.+... -+.+++.++.. .
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 4677889999999999999999999999876421 13333221111 0
Q ss_pred -----ccc----hhHHHHHH--------------------------HHHHHhccCCeEEEEcCccccccCCcCCCchHHH
Q 002169 369 -----NYG----ESEQALHE--------------------------VFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413 (957)
Q Consensus 369 -----~~g----e~e~~i~~--------------------------vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~ 413 (957)
+.+ +-+..+.. .+..|....|.||++||-- +..+-
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT----------s~LDi 171 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT----------SHLDI 171 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc----------cccCH
Confidence 001 11112222 2335667789999999931 22333
Q ss_pred HHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 414 ~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
.-..++++++..+..+.+..+|++.++ ++-|++
T Consensus 172 ~~Q~evl~ll~~l~~~~~~tvv~vlHD---lN~A~r 204 (258)
T COG1120 172 AHQIEVLELLRDLNREKGLTVVMVLHD---LNLAAR 204 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecC---HHHHHH
Confidence 444567888888877778899999854 455554
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-06 Score=78.88 Aligned_cols=99 Identities=22% Similarity=0.363 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc--------CCcEEEEeccccccc--------------ccc--hhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS--------GVNLFTVNGPEVVSQ--------------NYG--ESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l--------~~~~i~i~~~~l~~~--------------~~g--e~e~~i~~vf~~ 383 (957)
..+.++++||||+|||++++.++..+ ..+++.++++...+. ... ........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999887 677788877543311 001 122333334444
Q ss_pred HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 384 ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 384 a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.......+|+|||+|.+. .......|..+++ ..++.+|.+.++
T Consensus 83 l~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH----------THHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh----CCCCeEEEEECh
Confidence 444444599999999874 1334444544444 556666666543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-06 Score=89.05 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.++.++.+.+.||+|||||||...++...
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4778899999999999999999999999654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.2e-06 Score=89.07 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=78.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccccchhHHHHHHHH-------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNYGESEQALHEVF------------------- 381 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~~ge~e~~i~~vf------------------- 381 (957)
++.+..++.+-|+|++||||||++|++.+..... -+.+++.++......+....+.+++
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 4778899999999999999999999999876532 2445554443322112222333333
Q ss_pred --------HHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 382 --------DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 382 --------~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
.+|....|.+++.||.-+. .+-.+.++.+++|..++...+...+++++...
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSa----------LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSA----------LDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhh----------cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 3566778999999996544 34567788999999998888899999997654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-06 Score=88.83 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGR 806 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gR 806 (957)
+-|..+++|....|.||+-||+..-++.. ... .++..+..+....+.+||++||+++. .. +
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~--------t~~----~V~~ll~~~~~~~g~tii~VTHd~~l-----A~--~ 208 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSK--------TAK----EVLELLRELNKERGKTIIMVTHDPEL-----AK--Y 208 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChH--------HHH----HHHHHHHHHHHhcCCEEEEEcCCHHH-----HH--h
Confidence 34888999999999999999998544322 122 23333333334557789999997644 44 6
Q ss_pred cceecccC
Q 002169 807 FDRLLYVG 814 (957)
Q Consensus 807 fd~~i~~~ 814 (957)
+|++|++.
T Consensus 209 ~dr~i~l~ 216 (226)
T COG1136 209 ADRVIELK 216 (226)
T ss_pred CCEEEEEe
Confidence 67777663
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.6e-06 Score=101.45 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEecccccc-c--ccchhHHHHHHHHHHHhccCCeEEEEc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVNGPEVVS-Q--NYGESEQALHEVFDSASQSAPAVVFID 395 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~-------~~i~i~~~~l~~-~--~~ge~e~~i~~vf~~a~~~~p~IL~ID 395 (957)
++..-+|||+|+||||||++|+++++.... .+..+.+..... . ..|+..... ..+..| ...+++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~-GaLvlA---dgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQP-GAVVLA---NGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccC-CcEEEc---CCCeEEec
Confidence 344569999999999999999999986532 222222222111 0 001100000 011112 23599999
Q ss_pred CccccccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC-------------CchhhhhCC
Q 002169 396 ELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-------------SIEPALRRP 451 (957)
Q Consensus 396 EiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~-------------~ld~al~r~ 451 (957)
|+|.+. ......|++.|+.-. -..++.||+++|+.. .+++++++
T Consensus 565 Eidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 565 ELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred chhhCC-----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 999873 334456777775421 124689999999853 46788998
Q ss_pred CCcceee-eecCCCHHHHHHHHHHHH
Q 002169 452 GRLDREI-EIAVPSPAQRLEILHALL 476 (957)
Q Consensus 452 gRfd~~I-~i~~P~~~~r~~Il~~~l 476 (957)
|||-.+ .++.|+.+.-..|.+..+
T Consensus 633 -RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 633 -RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred -hhcEEEEecCCCChHHHHHHHHHHH
Confidence 999864 556777766566655544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-06 Score=87.55 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|-.+++|..-.|.+|++||+.+.++ -.++.++++.+..+....+..+|++||+...
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD------------~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALD------------VSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhc------------HHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 7778899999999999999997653 3455677777777777778999999997654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.7e-06 Score=91.87 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=70.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc----------------c---------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ----------------N--------------- 369 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~----------------~--------------- 369 (957)
++.+..++.+.|.||+||||||+.|+||+..... -+.+++.++..- |
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4677889999999999999999999999765321 233443322110 0
Q ss_pred ----cchhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHH
Q 002169 370 ----YGESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 419 (957)
Q Consensus 370 ----~ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~L 419 (957)
..+.+++++++-+ +|.-..|.++++||= -+..+..+...+
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP----------lSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP----------LSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc----------hhHhhHHHHHHH
Confidence 0133344444433 345567999999992 233455666667
Q ss_pred HHHhhccccCCCeEEEEecCCC
Q 002169 420 LNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 420 l~~ld~l~~~~~v~vI~ttN~~ 441 (957)
...+..+.++-++++|-.|++.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 7777777666677888888754
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-06 Score=81.49 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=64.3
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------------cccc--hHHHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------------WVGE--SEKAVRSLFAKA 735 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------------~vg~--~~~~ir~~f~~A 735 (957)
++++||||+|||++++.++... +.+.+.++....... +... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 455555554432210 0000 111123345666
Q ss_pred HhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 736 RANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 736 ~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
....|.+|+|||+..+....... ........+.+..+...+ ...++.+|+++|....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 77888999999999887543210 001111223333333333 3347888888886654
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 957 | ||||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 8e-68 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 8e-68 | ||
| 3cf0_A | 301 | Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH | 2e-65 | ||
| 3h4m_A | 285 | Aaa Atpase Domain Of The Proteasome- Activating Nuc | 7e-63 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 2e-59 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 1e-58 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 2e-58 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 2e-58 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 3e-58 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 4e-53 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 1e-52 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 6e-52 | ||
| 4b4t_L | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-48 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 4e-48 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 1e-46 | ||
| 4b4t_H | 467 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-46 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-46 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 5e-46 | ||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 6e-46 | ||
| 4b4t_K | 428 | Near-Atomic Resolution Structural Model Of The Yeas | 7e-45 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 1e-44 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 2e-44 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 3e-44 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-44 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 5e-44 | ||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 7e-44 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 8e-44 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-43 | ||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 2e-41 | ||
| 3b9p_A | 297 | Spastin Length = 297 | 2e-39 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 1e-38 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 2e-38 | ||
| 3vfd_A | 389 | Human Spastin Aaa Domain Length = 389 | 2e-36 | ||
| 1ofh_A | 310 | Asymmetric Complex Between Hslv And I-domain Delete | 2e-07 | ||
| 1ixs_B | 318 | Structure Of Ruvb Complexed With Ruva Domain Iii Le | 6e-06 | ||
| 1ixr_C | 312 | Ruva-Ruvb Complex Length = 312 | 6e-06 | ||
| 3kw6_A | 78 | Crystal Structure Of A Domain Of 26s Proteasome Reg | 2e-05 | ||
| 1hqc_A | 324 | Structure Of Ruvb From Thermus Thermophilus Hb8 Len | 2e-05 | ||
| 1hqc_A | 324 | Structure Of Ruvb From Thermus Thermophilus Hb8 Len | 4e-05 | ||
| 2krk_A | 86 | Solution Nmr Structure Of 26s Protease Regulatory S | 3e-05 | ||
| 1d2n_A | 272 | D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Prot | 5e-04 | ||
| 1nsf_A | 273 | D2 Hexamerization Domain Of N-Ethylmaleimide Sensit | 5e-04 |
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 | Back alignment and structure |
|
| >pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|3B9P|A Chain A, Spastin Length = 297 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 | Back alignment and structure |
|
| >pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 | Back alignment and structure |
|
| >pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 | Back alignment and structure |
|
| >pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 | Back alignment and structure |
|
| >pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory Subunit 8 From Homo Sapiens. Northeast Structural Genomics Consortium Target Id Hr3102a Length = 78 | Back alignment and structure |
|
| >pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 | Back alignment and structure |
|
| >pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 | Back alignment and structure |
|
| >pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit 8 From H.Sapiens, Northeast Structural Genomics Consortium Target Target Hr3102a Length = 86 | Back alignment and structure |
|
| >pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein Length = 272 | Back alignment and structure |
|
| >pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor (Nsf) Length = 273 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 467 bits (1203), Expect = e-158
Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 28/301 (9%)
Query: 632 AMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGC 691
A+RE ++EVP+V WED+GG +VK +L E V++P +H + F + G P G+L +GPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 692 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 751
KTL+A+A+A+E NF+++KGPEL + W GESE VR +F KAR AP ++FFDE+D +
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 752 AAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRL 810
A RG DG +DRV++Q+L E+DG+ + NV +I ATNRPD IDPA+LRPGR D+L
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 811 LYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
+Y+ P+E R I + +LRK P + DV++ LA ++ G +GAD++ IC+ A AI E+
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240
Query: 871 LDAS-----------------------RITMQHLKTAIRHVQPS----EIHSYKELSAKF 903
+++ I H + A+R + S +I Y+ +
Sbjct: 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300
Query: 904 Q 904
Q
Sbjct: 301 Q 301
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 3e-78
Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 8/230 (3%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
G+ P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+F
Sbjct: 42 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 101
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGGEELSQ---RMVATLLNLMDGVCRTDGVLVIAAT 438
D A Q+AP V+F DELD+IA AR + R++ +L MDG+ V +I AT
Sbjct: 102 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161
Query: 439 NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV--EYLSMATH 496
NRPD I+PA+ RPGRLD+ I I +P R+ IL A L + +V E+L+ T+
Sbjct: 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---VAKDVDLEFLAKMTN 218
Query: 497 GFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQ 546
GF GADL +C A + +R + + + T D + +
Sbjct: 219 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 268
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 440 bits (1135), Expect = e-149
Identities = 115/268 (42%), Positives = 170/268 (63%), Gaps = 16/268 (5%)
Query: 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMA 697
+ VP V W D+G +++ +L A+ P ++ + FK +G P G+L+ GPPGC KTL+A
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 698 RAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757
+AVA+E+GLNF++VKGPEL + +VGESE+AVR +F +A+ +AP +IFFDE+D L R
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121
Query: 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
G S RV++QLL E+DGL R V ++AATNRPD IDPA+LRPGR D+ L+VG P
Sbjct: 122 RETG--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 818 ETDREEIFRIHLR---KIPCSSDVNIRELA--CLSEGCTGADISLICREAAISAIEENLD 872
DR I + + K P +DVN+ +A + TGAD+S + REA+I A+ + +
Sbjct: 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239
Query: 873 AS---------RITMQHLKTAIRHVQPS 891
+++ +H + A + V+ S
Sbjct: 240 RQKSGNEKGELKVSHKHFEEAFKKVRSS 267
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 260 bits (668), Expect = 3e-80
Identities = 90/201 (44%), Positives = 125/201 (62%), Gaps = 4/201 (1%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
+LGL GVLL GPPG GKT LA+ A++SG+N +V GPE+++ GESE+A+ +VF
Sbjct: 37 KALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF 96
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441
A SAP V+F DE+DA+ P R D S R+V LL MDG+ V ++AATNRP
Sbjct: 97 QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRP 156
Query: 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA----THG 497
D I+PA+ RPGRLD+ + + +P PA RL IL + LD++V ++A
Sbjct: 157 DIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDC 216
Query: 498 FVGADLAALCNEAALVCLRRY 518
+ GADL+AL EA++ LR+
Sbjct: 217 YTGADLSALVREASICALRQE 237
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 368 bits (946), Expect = e-118
Identities = 117/287 (40%), Positives = 167/287 (58%), Gaps = 17/287 (5%)
Query: 620 DFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP 679
+ P + + +V ++D+GG R+ Q+ E VE P +H FK IG +P
Sbjct: 178 PDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP 237
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA 739
P GIL++GPPG KTL+ARAVA+E G F + GPE+ SK GESE +R F +A NA
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA 297
Query: 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799
P+IIF DE+D +A R K V R++SQLL +DGL QR +V V+AATNRP+ IDP
Sbjct: 298 PAIIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLIC 859
AL R GRFDR + +G P+ T R EI +IH + + + DV++ ++A + G GAD++ +C
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415
Query: 860 REAAISAI---------------EENLDASRITMQHLKTAIRHVQPS 891
EAA+ AI E +++ +TM + A+ PS
Sbjct: 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 303 bits (778), Expect = 2e-93
Identities = 107/232 (46%), Positives = 158/232 (68%), Gaps = 2/232 (0%)
Query: 296 SKLGGLSKEYAILKDIIISSSVKSTL-SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354
+GG K+ A +K+++ L ++G++P +G+LL+GPPGTGKT +AR A+++G
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 355 VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQR 414
F +NGPE++S+ GESE L + F+ A ++APA++FIDELDAIAP R+ E+ +R
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323
Query: 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474
+V+ LL LMDG+ + V+V+AATNRP+SI+PALRR GR DRE++I +P RLEIL
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383
Query: 475 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 526
M+ + D ++E ++ THG VGADLAALC+EAAL +R+ + D
Sbjct: 384 HTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 9e-14
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 600 DSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQ 657
D +E +L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHHHHH 488
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-115
Identities = 121/272 (44%), Positives = 169/272 (62%), Gaps = 5/272 (1%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+R AM + E P V++ED+GG + ++ E VE P KH E F+++G PP GIL++G
Sbjct: 1 MRAKAME--VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KTL+A+AVA+E F+ V G EL K++GE V+ +F A+ APSIIF DE
Sbjct: 59 PPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDE 118
Query: 748 IDGLAAIRGKESDGVSV-SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGR 806
ID +AA R G R + QLL E+DG R +V +I ATNRPD +DPA+LRPGR
Sbjct: 119 IDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGR 178
Query: 807 FDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISA 866
FDR++ V P+E R EI +IH RK+ + DVN+ E+A ++EGC GA++ IC EA ++A
Sbjct: 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNA 238
Query: 867 IEENLDASRITMQHLKTAIRHVQPSEIHSYKE 898
I E D +TM + A+ + + KE
Sbjct: 239 IRELRD--YVTMDDFRKAVEKIMEKKKVKVKE 268
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 1e-79
Identities = 87/209 (41%), Positives = 118/209 (56%), Gaps = 8/209 (3%)
Query: 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFD 382
+G+ P KG+LL+GPPGTGKT LA+ A ++ V G E+V + GE + ++F
Sbjct: 45 KVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFK 104
Query: 383 SASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
A + AP+++FIDE+DAIA R D GG+ QR + LL MDG V +I ATN
Sbjct: 105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164
Query: 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV--EYLSMATHG 497
RPD ++PA+ RPGR DR IE+ P RLEIL M L +V E ++ T G
Sbjct: 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---LAEDVNLEEIAKMTEG 221
Query: 498 FVGADLAALCNEAALVCLRRYSKIQTSSD 526
VGA+L A+C EA + +R T D
Sbjct: 222 CVGAELKAICTEAGMNAIRELRDYVTMDD 250
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 331 bits (850), Expect = e-106
Identities = 103/320 (32%), Positives = 165/320 (51%), Gaps = 54/320 (16%)
Query: 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCS 692
++ E P VKWEDV G K L EAV P K FK +P +GIL++GPPG
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTG 63
Query: 693 KTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLA 752
K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF D++D L
Sbjct: 64 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 123
Query: 753 AIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRL 810
RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R RF+R
Sbjct: 124 GTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 178
Query: 811 LYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869
+Y+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I +
Sbjct: 179 IYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
Query: 870 NLDASR-----------------------------------------ITMQHLKTAIRHV 888
A+ +T++ AI+
Sbjct: 239 IQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKST 298
Query: 889 QPS----EIHSYKELSAKFQ 904
+P+ ++ ++ + F
Sbjct: 299 RPTVNEDDLLKQEQFTRDFG 318
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 4e-67
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 6/225 (2%)
Query: 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353
D+ GL LK+ +I L +PT G+LL+GPPGTGK+ LA+ A ++
Sbjct: 19 DV---AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75
Query: 354 GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413
F+V+ ++VS+ GESE+ + ++F A ++ P+++FID++DA+ R +G E S+
Sbjct: 76 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 135
Query: 414 RMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL 472
R+ LL M+GV GVLV+ ATN P ++ A+RR R +R I I +P A R +
Sbjct: 136 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 193
Query: 473 HALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517
+ L + L T G+ G+D+A + +A + +R+
Sbjct: 194 EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 320 bits (822), Expect = e-102
Identities = 107/296 (36%), Positives = 162/296 (54%), Gaps = 25/296 (8%)
Query: 627 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMF 686
K+ + E++ KV+W D+ GQ K L E V P E F + P G+L+F
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLF 60
Query: 687 GPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD 746
GPPG KTL+ARAVA+E FL + L SK+VG+ EK VR+LFA AR PSIIF D
Sbjct: 61 GPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 120
Query: 747 EIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGL---HQRVNVTVIAATNRPDKIDPALL 802
E+D L + R E + S R+ ++ LVE DGL + V+AATNRP ++D A L
Sbjct: 121 EVDSLLSERSSSEHE---ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177
Query: 803 RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICRE 861
R RF + +YV P+E RE + L+K +R LA +++G +G+D++ + ++
Sbjct: 178 R--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235
Query: 862 AAISAIEE---------NLDASR-ITMQHLKTAIRHVQPS----EIHSYKELSAKF 903
AA+ I E ++ A R IT Q ++++ ++ S ++SY++ S +
Sbjct: 236 AALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 4e-64
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 8/235 (3%)
Query: 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353
DI G L++++I SV+ L + P KG+LL GPPG GKT LAR A +
Sbjct: 22 DI---AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78
Query: 354 GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413
++ + S+ G+ E+ + +F A P+++FIDE+D++ R E S+
Sbjct: 79 SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR 138
Query: 414 RMVATLLNLMDGVCRT---DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLE 470
R+ L DG+ D ++V+AATNRP ++ A R R + + +++P R
Sbjct: 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTREL 196
Query: 471 ILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 525
+L+ LL L + L+ T G+ G+DL AL +AAL +R + Q
Sbjct: 197 LLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 320 bits (821), Expect = e-102
Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 61/323 (18%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
+++E P VKW DV G K L EAV P K F P GIL+FGPPG K+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSY 60
Query: 696 MARAVASEAGL-NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754
+A+AVA+EA F ++ +L SKW+GESEK V++LF AR N PSIIF DEID L
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 755 RGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
R + ES+ + R+ ++ LV++ G+ + V+ ATN P +D A+ R RF++ +Y
Sbjct: 121 RSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 813 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871
+ P R +F++HL S ++ + REL ++G +GADIS+I R+A + + +
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235
Query: 872 DASR-----------------------------------------------ITMQHLKTA 884
A+ ++M + +
Sbjct: 236 SATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRS 295
Query: 885 IRHVQPS----EIHSYKELSAKF 903
+ + +P+ ++ K+ + F
Sbjct: 296 LSNTKPTVNEHDLLKLKKFTEDF 318
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 7e-66
Identities = 79/346 (22%), Positives = 150/346 (43%), Gaps = 52/346 (15%)
Query: 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353
D+ GL LK+ +I L + P +G+LL GPPGTGK+ LA+ A ++
Sbjct: 13 DV---AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69
Query: 354 GV-NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELS 412
F+++ ++VS+ GESE+ + +F A ++ P+++FIDE+D++ +R + E +
Sbjct: 70 NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAA 129
Query: 413 QRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEI 471
+R+ L M GV DG+LV+ ATN P ++ A+RR R ++ I I +P P R +
Sbjct: 130 RRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAM 187
Query: 472 LHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHST 531
L ++SL +++ L T G+ GAD++ + +A + +R+
Sbjct: 188 FKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV------------- 234
Query: 532 GTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIA 591
+ + + D +PC+ P + + T ++
Sbjct: 235 ---------QSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGA-------IEMTWMDVP 278
Query: 592 DNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVI 637
+K + + D ++ +P+ +
Sbjct: 279 ----------------GDKLLEPVVSMSDMLRSLSNTKPTVNEHDL 308
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 321 bits (823), Expect = e-101
Identities = 102/332 (30%), Positives = 166/332 (50%), Gaps = 52/332 (15%)
Query: 620 DFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP 679
+ + K+R + ++ E P VKWEDV G K L EAV P K FK +P
Sbjct: 25 NGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKP 83
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA 739
+GIL++GPPG K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N
Sbjct: 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK 143
Query: 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKID 798
PSIIF D++D L RG S R+ ++LLV+++G+ + V V+ ATN P ++D
Sbjct: 144 PSIIFIDQVDALTGTRG--EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201
Query: 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISL 857
A+ R RF+R +Y+ P+ R +F I++ P + + R L ++EG +G+DI++
Sbjct: 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259
Query: 858 ICREAAISAIEENLDASR-----------------------------------------I 876
+ ++A + I + A+ +
Sbjct: 260 VVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDL 319
Query: 877 TMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904
T++ AI+ +P+ ++ ++ + F
Sbjct: 320 TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 8e-64
Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 6/225 (2%)
Query: 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353
D+ GL LK+ +I L +PT G+LL+GPPGTGK+ LA+ A ++
Sbjct: 52 DV---AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108
Query: 354 GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413
F+V+ ++VS+ GESE+ + ++F A ++ P+++FID++DA+ R +G E S+
Sbjct: 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR 168
Query: 414 RMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL 472
R+ LL M+GV GVLV+ ATN P ++ A+RR R +R I I +P A R +
Sbjct: 169 RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMF 226
Query: 473 HALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517
+ L + L T G+ G+D+A + +A + +R+
Sbjct: 227 EINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 319 bits (818), Expect = e-101
Identities = 103/294 (35%), Positives = 151/294 (51%), Gaps = 22/294 (7%)
Query: 627 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMF 686
K+ M E++ P V WED+ G K + E V WP + F + PP GIL+F
Sbjct: 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLF 123
Query: 687 GPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD 746
GPPG KTL+ + +AS++G F ++ L SKWVGE EK VR+LFA AR P++IF D
Sbjct: 124 GPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFID 183
Query: 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATNRPDKIDPALLRP 804
EID L + RG S R+ ++ LV+LDG + V+ ATNRP +ID A R
Sbjct: 184 EIDSLLSQRGDGEHE--SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR- 240
Query: 805 GRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAA 863
R + LY+ P + R++I + K C S+ I ++ S+ +GAD++ +CREA+
Sbjct: 241 -RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299
Query: 864 ISAIEENLDASR----------ITMQHLKTAIRHVQPS----EIHSYKELSAKF 903
+ I A I + A R V+PS ++ Y+ + F
Sbjct: 300 LGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 1e-63
Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 7/234 (2%)
Query: 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353
DI G+ A +K+I++ ++ + + P KG+LL GPPGTGKT + + A S
Sbjct: 85 DI---AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141
Query: 354 GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413
G F+++ + S+ GE E+ + +F A PAV+FIDE+D++ R DG E S+
Sbjct: 142 GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR 201
Query: 414 RMVATLLNLMDGVC--RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEI 471
R+ L +DG D +LV+ ATNRP I+ A RR RL + + I +P + R +I
Sbjct: 202 RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQI 259
Query: 472 LHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 525
+ L+S + L + E+E + + F GAD+ LC EA+L +R ++
Sbjct: 260 VINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT 313
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = 2e-98
Identities = 105/370 (28%), Positives = 175/370 (47%), Gaps = 22/370 (5%)
Query: 551 SRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEK 610
R+ T + + + L S +G+ + ++ +
Sbjct: 20 PRSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTT 79
Query: 611 GCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQE 670
K +L +F + M E++ VK++D+ GQ K L E V P E
Sbjct: 80 ATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPE 139
Query: 671 AFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRS 730
F + P G+L+FGPPG KT++A+AVA+E+ F + L SK+VGE EK VR+
Sbjct: 140 LFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRA 198
Query: 731 LFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVI 788
LFA AR PSIIF D++D L R + S R+ ++ L+E DG+ + V V+
Sbjct: 199 LFAVARELQPSIIFIDQVDSLLCERREGEHD--ASRRLKTEFLIEFDGVQSAGDDRVLVM 256
Query: 789 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS 847
ATNRP ++D A+LR RF + +YV PNE R + + L K + + +LA ++
Sbjct: 257 GATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMT 314
Query: 848 EGCTGADISLICREAAISAIEE-------NLDASR---ITMQHLKTAIRHVQPS----EI 893
+G +G+D++ + ++AA+ I E N+ AS I + +++ ++ S +
Sbjct: 315 DGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTL 374
Query: 894 HSYKELSAKF 903
+Y + F
Sbjct: 375 EAYIRWNKDF 384
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 215 bits (548), Expect = 5e-62
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 7/229 (3%)
Query: 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353
DI G L++I+I S++ L + P +G+LL GPPG GKT LA+ A +S
Sbjct: 116 DI---AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 354 GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413
F ++ + S+ GE E+ + +F A + P+++FID++D++ R++G + S+
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASR 232
Query: 414 RMVATLLNLMDGVCR--TDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEI 471
R+ L DGV D VLV+ ATNRP ++ A+ R R + + +++P+ RL +
Sbjct: 233 RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLL 290
Query: 472 LHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520
L LL L E+ L+ T G+ G+DL AL +AAL +R
Sbjct: 291 LKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 312 bits (800), Expect = 4e-97
Identities = 102/359 (28%), Positives = 163/359 (45%), Gaps = 59/359 (16%)
Query: 599 SDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQL 658
+ EKG E + + K++ +++E P VKW DV G K L
Sbjct: 87 VKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEAL 146
Query: 659 MEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NFLAVKGPELF 717
EAV P K F P GIL+FGPPG K+ +A+AVA+EA F ++ +L
Sbjct: 147 KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205
Query: 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777
SKW+GESEK V++LF AR N PSIIF DEID L R + + R+ ++ LV++
Sbjct: 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS--ENESEAARRIKTEFLVQMQ 263
Query: 778 GL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS- 835
G+ + V+ ATN P +D A+ R RF++ +Y+ P R +FR+HL S
Sbjct: 264 GVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL 321
Query: 836 SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR-------------------- 875
++ + +EL ++G +GADIS+I R+A + + + A+
Sbjct: 322 TEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLL 381
Query: 876 ---------------------------ITMQHLKTAIRHVQPS----EIHSYKELSAKF 903
++M + ++ +P+ ++ K+ + F
Sbjct: 382 TPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDF 440
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 2e-61
Identities = 101/472 (21%), Positives = 192/472 (40%), Gaps = 58/472 (12%)
Query: 183 ESAIKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTE 242
E A++L Q +L+ A + + A KL L + +PQ
Sbjct: 28 EEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQ-KP 86
Query: 243 SMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLS 302
+ +S + K L+ IE NV+ D+ GL
Sbjct: 87 VKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKW---SDV---AGLE 140
Query: 303 KEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-NLFTVN 361
LK+ +I L + P +G+LL GPPGTGK+ LA+ A ++ F+++
Sbjct: 141 GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200
Query: 362 GPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421
++VS+ GESE+ + +F A ++ P+++FIDE+D++ +R + E ++R+ L
Sbjct: 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 260
Query: 422 LMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME 480
M GV DG+LV+ ATN P ++ A+RR R ++ I I +P R + L +
Sbjct: 261 QMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ 318
Query: 481 HSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGH 540
+SL +++ + L T G+ GAD++ + +A + +R+ V +
Sbjct: 319 NSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSR-------- 370
Query: 541 SDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSD 600
+ + D +PC+ P ++ + + +
Sbjct: 371 --------------ADPNCIVNDLLTPCSPGDPGAIEMTWMDVP---------------- 400
Query: 601 SSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQR 652
+K + + D ++ +P+ + +L++ K+ + GQ
Sbjct: 401 -------GDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKL--KKFTEDFGQE 443
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 261 bits (668), Expect = 4e-80
Identities = 49/298 (16%), Positives = 99/298 (33%), Gaps = 38/298 (12%)
Query: 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL 706
+ G + + V K K + P + ++G G K+ V + G+
Sbjct: 5 KLDGFYIAPAFMDKLVVHITK--NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 62
Query: 707 NFLAVKGPELFSKWVGESEKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGV 762
N + + EL S GE K +R + +A R +F +++D A G +
Sbjct: 63 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQY- 121
Query: 763 SVSDRVMSQLLVEL------------DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRL 810
+V++++++ L+ + + V +I N + L+R GR ++
Sbjct: 122 TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181
Query: 811 LYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
+ P DR + R + +V ++ + + G I A +E
Sbjct: 182 YWA--PTREDRIGVCTGIFR----TDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEV 235
Query: 871 LD---------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQRLVHSNAEADE 915
+ QP ++ Y + + Q V AD+
Sbjct: 236 RKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 1e-58
Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 25/248 (10%)
Query: 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356
KL G A + +++ K+ L ++ + + G G GK+ L G+N
Sbjct: 5 KLDGFYIAPAFMDKLVVHI-TKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGIN 63
Query: 357 LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEE-L 411
++ E+ S N GE + + + + A+ + +FI++LDA A + +
Sbjct: 64 PIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTV 123
Query: 412 SQRMV-ATLLNL--------MDGVCRTD---GVLVIAATNRPDSIEPALRRPGRLDREIE 459
+ +MV ATL+N+ + G+ V +I N ++ L R GR+++
Sbjct: 124 NNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW 183
Query: 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519
P+ R+ + + E + F G + A V
Sbjct: 184 --APTREDRIGVCTGIFRTDNVPA-----EDVVKIVDNFPGQSIDFFGALRARVYDDEVR 236
Query: 520 KIQTSSDV 527
K + + +
Sbjct: 237 KWVSGTGI 244
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 1e-77
Identities = 99/254 (38%), Positives = 148/254 (58%), Gaps = 13/254 (5%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEW---PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
V ++DV G E K ++ E V++ P++ F ++G + P G L+ GPPGC KTL+A+
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPER----FLQLGAKVPKGALLLGPPGCGKTLLAK 57
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
AVA+EA + FLA+ G E G VRSLF +ARA AP I++ DEID + R
Sbjct: 58 AVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT 117
Query: 759 SDGVSVSDR--VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPP 816
G S ++ ++QLLVE+DG+ +V V+A+TNR D +D AL+RPGR DR +++ P
Sbjct: 118 MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177
Query: 817 NETDREEIFRIHLRKIPCSSDVNI--RELACLSEGCTGADISLICREAAISAIEENLDAS 874
+R EIF HL+ + + + LA L+ G +GADI+ IC EAA+ A E +
Sbjct: 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG--HT 235
Query: 875 RITMQHLKTAIRHV 888
+ + + A+ V
Sbjct: 236 SVHTLNFEYAVERV 249
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-48
Identities = 78/213 (36%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
LG + KG LL GPPG GKT LA+ A ++ V + G E V G + +F
Sbjct: 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKE 93
Query: 384 ASQSAPAVVFIDELDAIAPARKDGG---------EELSQRMVATLLNLMDGVCRTDGVLV 434
A AP +V+IDE+DA+ R + L+Q LL MDG+ TD V+V
Sbjct: 94 ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQ-----LLVEMDGMGTTDHVIV 148
Query: 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL-LDSEVEYLSM 493
+A+TNR D ++ AL RPGRLDR + I +P+ +R EI L ++ + + L+
Sbjct: 149 LASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAE 208
Query: 494 ATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 526
T GF GAD+A +CNEAAL R + +
Sbjct: 209 LTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 1e-72
Identities = 100/256 (39%), Positives = 150/256 (58%), Gaps = 12/256 (4%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEW---PQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
E P V+++D+ G E K +++E V++ P++ + +G + P G+L+ GPPG KTL
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPER----YANLGAKIPKGVLLVGPPGTGKTL 59
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
+A+AVA EA + F ++ G +VG VR LF A+ APSIIF DEID + R
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
Query: 756 GKESDGVSVSDR--VMSQLLVELDGLHQR-VNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
+R ++QLL E+DG V V+AATNRP+ +DPAL+RPGRFDR +
Sbjct: 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVL 179
Query: 813 VGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
V P+ R EI ++H++ + ++DVN++E+A L+ G GAD++ I EAA+ A N
Sbjct: 180 VDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239
Query: 873 ASRITMQHLKTAIRHV 888
+ QHLK A+
Sbjct: 240 E--VRQQHLKEAVERG 253
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 6e-47
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 24/220 (10%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
++LG + KGVLL GPPGTGKT LA+ A ++ V F++ G + G + ++F
Sbjct: 37 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 96
Query: 382 DSASQSAPAVVFIDELDAIAPARKDGG---------EELSQRMVATLLNLMDG-VCRTDG 431
++A + AP+++FIDE+DAI +R GG + L+Q LL MDG
Sbjct: 97 ETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQ-----LLAEMDGFGSENAP 151
Query: 432 VLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVE 489
V+V+AATNRP+ ++PAL RPGR DR++ + P R+EIL H ++ L ++V
Sbjct: 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH-----IKGVKLANDVN 206
Query: 490 YLSMA--THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
+A T G GADLA + NEAAL+ R K +
Sbjct: 207 LQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHL 246
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 1e-72
Identities = 112/285 (39%), Positives = 155/285 (54%), Gaps = 18/285 (6%)
Query: 605 MFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEW 664
M F K+R +V + E PKV ++DV G E K +L E VE+
Sbjct: 7 MGARNGRAGPSDSAFSFTKSRARV--------LTEAPKVTFKDVAGAEEAKEELKEIVEF 58
Query: 665 ---PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 721
P + F +G R P G+L+ GPPG KT +ARAVA EA + F+ G + +V
Sbjct: 59 LKNPSR----FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 722 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLH 780
G VR LF A+ +AP I+F DEID + RG G ++ ++QLLVE+DG
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Query: 781 QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNI 840
+ + V+AATNRPD +DPALLRPGRFDR + + P+ RE+I RIH R P + DV++
Sbjct: 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL 234
Query: 841 RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885
LA + G GAD+ + EAA+ A E +ITM+ L+ A
Sbjct: 235 ALLAKRTPGFVGADLENLLNEAALLAAREGRR--KITMKDLEEAA 277
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 4e-47
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 12/213 (5%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
+G R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F
Sbjct: 66 HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 125
Query: 382 DSASQSAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438
++A + AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AAT
Sbjct: 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 185
Query: 439 NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMA-- 494
NRPD ++PAL RPGR DR+I I P R +IL H L +V+ +A
Sbjct: 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARGKPLAEDVDLALLAKR 240
Query: 495 THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
T GFVGADL L NEAAL+ R + T D+
Sbjct: 241 TPGFVGADLENLLNEAALLAAREGRRKITMKDL 273
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 6e-72
Identities = 107/251 (42%), Positives = 147/251 (58%), Gaps = 10/251 (3%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEW---PQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
E PKV ++DV G E K +L E VE+ P + F +G R P G+L+ GPPG KT
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSR----FHEMGARIPKGVLLVGPPGVGKTH 64
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
Query: 756 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 185 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 242
Query: 875 RITMQHLKTAI 885
+ITM+ L+ A
Sbjct: 243 KITMKDLEEAA 253
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-47
Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 12/213 (5%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
+G R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F
Sbjct: 42 HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 101
Query: 382 DSASQSAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438
++A + AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AAT
Sbjct: 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 161
Query: 439 NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMA-- 494
NRPD ++PAL RPGR DR+I I P R +IL H L +V+ +A
Sbjct: 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARGKPLAEDVDLALLAKR 216
Query: 495 THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
T GFVGADL L NEAAL+ R + T D+
Sbjct: 217 TPGFVGADLENLLNEAALLAAREGRRKITMKDL 249
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 1e-71
Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 10/252 (3%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEW---PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMA 697
K + DV G E K ++ E VE+ P + F+++G + P G+LM GPPG KTL+A
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEYLREPSR----FQKLGGKIPKGVLMVGPPGTGKTLLA 62
Query: 698 RAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757
+A+A EA + F + G + +VG VR +F +A+ AP IIF DEID + RG
Sbjct: 63 KAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122
Query: 758 E-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPP 816
G ++ ++Q+LVE+DG + VIAATNRPD +DPALLRPGRFDR + VG P
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 182
Query: 817 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876
+ RE+I ++H+R++P + D++ +A + G +GAD++ + EAA+ A N +
Sbjct: 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVV 240
Query: 877 TMQHLKTAIRHV 888
+M + A +
Sbjct: 241 SMVEFEKAKDKI 252
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-47
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
LG + KGVL+ GPPGTGKT LA+ A ++ V FT++G + V G + ++F
Sbjct: 38 QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF 97
Query: 382 DSASQSAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438
+ A ++AP ++FIDE+DA+ R GG + ++ + +L MDG +G++VIAAT
Sbjct: 98 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157
Query: 439 NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMA-- 494
NRPD ++PAL RPGR DR++ + +P R +IL H M L +++ +A
Sbjct: 158 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH-----MRRVPLAPDIDAAIIARG 212
Query: 495 THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
T GF GADLA L NEAAL R ++ + +
Sbjct: 213 TPGFSGADLANLVNEAALFAARGNKRVVSMVEF 245
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 2e-67
Identities = 114/260 (43%), Positives = 152/260 (58%), Gaps = 32/260 (12%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEW---PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMA 697
+V ++DVGG E +L E VE+ P K F RIG R P GIL+ GPPG KTL+A
Sbjct: 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSK----FNRIGARMPKGILLVGPPGTGKTLLA 66
Query: 698 RAVASEAGLNFLAVKGP---ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754
RAVA EA + F + G ELF VG VR LFA+A+A+AP I+F DEID +
Sbjct: 67 RAVAGEANVPFFHISGSDFVELF---VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRH 123
Query: 755 RG---------KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 805
RG +E + ++QLLVE+DG + + V+AATNRPD +DPALLRPG
Sbjct: 124 RGAGLGGGHDERE--------QTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175
Query: 806 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 865
RFD+ + V PP+ R++I IH R P + DVN+ +A + G GAD+ + EAA+
Sbjct: 176 RFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALL 235
Query: 866 AIEENLDASRITMQHLKTAI 885
A E D +ITM+ + AI
Sbjct: 236 AAREGRD--KITMKDFEEAI 253
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-42
Identities = 87/216 (40%), Positives = 116/216 (53%), Gaps = 22/216 (10%)
Query: 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDS 383
+G R KG+LL GPPGTGKT LAR A ++ V F ++G + V G + ++F
Sbjct: 44 IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQ 103
Query: 384 ASQSAPAVVFIDELDAIAPARKDG---GEE-----LSQRMVATLLNLMDGVCRTDGVLVI 435
A AP +VFIDE+DA+ R G G + L+Q LL MDG +G++V+
Sbjct: 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-----LLVEMDGFDSKEGIIVM 158
Query: 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSM 493
AATNRPD ++PAL RPGR D++I + P R +IL H + L +V +
Sbjct: 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH-----TRNKPLAEDVNLEII 213
Query: 494 A--THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
A T GFVGADL L NEAAL+ R T D
Sbjct: 214 AKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 2e-67
Identities = 111/278 (39%), Positives = 153/278 (55%), Gaps = 42/278 (15%)
Query: 623 KARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEW---PQKHQEAFKRIGTRP 679
+AR+ + E PKV ++DV G E K +L E VE+ P + F +G R
Sbjct: 18 RARV----------LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSR----FHEMGARI 63
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP---ELFSKWVGESEKAVRSLFAKAR 736
P G+L+ GPPG KT +ARAVA EA + F+ G E+F VG VR LF A+
Sbjct: 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF---VGVGAARVRDLFETAK 120
Query: 737 ANAPSIIFFDEIDGLAAIRG---------KESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787
+AP I+F DEID + RG +E + ++QLLVE+DG + + V
Sbjct: 121 RHAPCIVFIDEIDAVGRKRGSGVGGGNDERE--------QTLNQLLVEMDGFEKDTAIVV 172
Query: 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLS 847
+AATNRPD +DPALLRPGRFDR + + P+ RE+I RIH R P + DV++ LA +
Sbjct: 173 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT 232
Query: 848 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885
G GAD+ + EAA+ A E +ITM+ L+ A
Sbjct: 233 PGFVGADLENLLNEAALLAAREGRR--KITMKDLEEAA 268
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 1e-41
Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 22/218 (10%)
Query: 322 SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVF 381
+G R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F
Sbjct: 57 HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 116
Query: 382 DSASQSAPAVVFIDELDAIAPARKDG---GEE-----LSQRMVATLLNLMDGVCRTDGVL 433
++A + AP +VFIDE+DA+ R G G + L+Q LL MDG + ++
Sbjct: 117 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLVEMDGFEKDTAIV 171
Query: 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYL 491
V+AATNRPD ++PAL RPGR DR+I I P R +IL H L +V+
Sbjct: 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH-----ARGKPLAEDVDLA 226
Query: 492 SMA--THGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
+A T GFVGADL L NEAAL+ R + T D+
Sbjct: 227 LLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 3e-62
Identities = 50/280 (17%), Positives = 103/280 (36%), Gaps = 22/280 (7%)
Query: 620 DFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP 679
+ M ++P A + + + T++++ E + + R P
Sbjct: 8 HHHGSTMDIKP-AFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRT---P 63
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESE-KAVRSLFAKARAN 738
+L+ GPP KT +A +A E+ F+ + P+ + ++ +A++ +F A +
Sbjct: 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS 123
Query: 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR-VNVTVIAATNRPDKI 797
S + D+I+ L G S+ V+ LLV L + + +I T+R D +
Sbjct: 124 QLSCVVVDDIERLLDYVP---IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180
Query: 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT---GAD 854
+ F ++V PN E++ + D +A +G G
Sbjct: 181 Q-EMEMLNAFSTTIHV--PNIATGEQLLEAL-ELLGNFKDKERTTIAQQVKGKKVWIGIK 236
Query: 855 ISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIH 894
L+ E ++ E ++ +R S +
Sbjct: 237 KLLMLIEMSLQMDPEY------RVRKFLALLREEGASPLD 270
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 1e-55
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 11/197 (5%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE-QALHEVFDSASQ 386
P VLL GPP +GKT+LA A +S + P+ + ++ QA+ ++FD A +
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 122
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIE 445
S + V +D+++ + G S ++ LL L+ + +L+I T+R D ++
Sbjct: 123 SQLSCVVVDDIERLLDYVPIGPRF-SNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG---FVGAD 502
+ I VP+ A ++L AL + D E ++ G ++G
Sbjct: 182 -EMEMLNAFSTTIH--VPNIATGEQLLEALELLG--NFKDKERTTIAQQVKGKKVWIGIK 236
Query: 503 LAALCNEAALVCLRRYS 519
+ E +L Y
Sbjct: 237 KLLMLIEMSLQMDPEYR 253
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-23
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 812 YVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871
+ PNE R +I +IH RK+ + +N+R++A L G +GA++ +C EA + A+ E
Sbjct: 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER- 65
Query: 872 DASRITMQHLKTAIRHVQPSE 892
+T + + A+ V +
Sbjct: 66 -RVHVTQEDFEMAVAKVMQKD 85
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-10
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 458 IEIAVPSPAQRLEIL--HALLSGMEHSLLDSEV--EYLSMATHGFVGADLAALCNEAALV 513
+ P+ RL+IL H+ M L + ++ G GA++ +C EA +
Sbjct: 6 HHHSHPNEEARLDILKIHS--RKMN---LTRGINLRKIAELMPGASGAEVKGVCTEAGMY 60
Query: 514 CLRRYSKIQTSSD 526
LR T D
Sbjct: 61 ALRERRVHVTQED 73
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 2e-22
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874
PPNE R +I +IH RK+ + +N+R++A L G +GA++ +C EA + A+ E
Sbjct: 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RV 59
Query: 875 RITMQHLKTAIRHVQPSE 892
+T + + A+ V +
Sbjct: 60 HVTQEDFEMAVAKVMQKD 77
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 7e-08
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 463 PSPAQRLEIL--HALLSGMEHSLLDSEV--EYLSMATHGFVGADLAALCNEAALVCLRRY 518
P+ RL+IL H+ M L + ++ G GA++ +C EA + LR
Sbjct: 3 PNEEARLDILKIHS--RKMN---LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 57
Query: 519 SKIQTSSD 526
T D
Sbjct: 58 RVHVTQED 65
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-20
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 817 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876
+ + IF K+ S +V++ + + +GADI+ IC+E+ + A+ EN +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN--RYIV 59
Query: 877 TMQHLKTAIRHVQPS---EIHSYK 897
+ + A + V E YK
Sbjct: 60 LAKDFEKAYKTVIKKDEQEHEFYK 83
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 467 QRLEILHALLSGMEHSLLDSEV--EYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524
Q+ I + S M L EV E GAD+ ++C E+ ++ +R I +
Sbjct: 5 QKRLIFSTITSKMN---LSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 525 SD 526
D
Sbjct: 62 KD 63
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 87.1 bits (215), Expect = 1e-18
Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 28/225 (12%)
Query: 619 VDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWP--QKHQEAFKRIG 676
+D S +EV+ E ++ G + VK ++ E ++ ++
Sbjct: 11 IDLRAEY---EGSGAKEVLEE----LDRELIGLKPVKDRIRETAALLLVERARQKLGLAH 63
Query: 677 TRPPTGILMFGPPGCSKTLMARAVA---SEAGL----NFLAVKGPELFSKWVGESEKAVR 729
P + G PG KT +A +A G + ++V +L +++G + +
Sbjct: 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTK 123
Query: 730 SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789
+ +A ++F DE L + G + LL ++ + V +
Sbjct: 124 EVLKRAM---GGVLFIDEAYYLYRPDNERDYG----QEAIEILLQVMENNRDDLVVILAG 176
Query: 790 ATNRPDK---IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK 831
+R + +P R + ++ + EI L
Sbjct: 177 YADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDD 219
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 2e-18
Identities = 59/258 (22%), Positives = 90/258 (34%), Gaps = 27/258 (10%)
Query: 280 AQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVL---LHG 336
A+ E + +E+ +L GL +++ V+ LGL L G
Sbjct: 15 AEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTG 74
Query: 337 PPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
PGTGKT++A A H G +L +V ++V Q G + EV A
Sbjct: 75 NPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---G 131
Query: 390 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449
V+FIDE + R D + Q + LL +M+ D ++VI A
Sbjct: 132 GVLFIDEAYYL--YRPDNERDYGQEAIEILLQVME--NNRDDLVVILAGYADRMENFFQS 187
Query: 450 RPG---RLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYL------SMATHGFV- 499
PG R+ IE S + EI +L + + L F
Sbjct: 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFAN 247
Query: 500 GADLAALCNEAALVCLRR 517
+ + A L R
Sbjct: 248 ARSIRNALDRARLRQANR 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 2e-18
Identities = 84/478 (17%), Positives = 144/478 (30%), Gaps = 146/478 (30%)
Query: 171 VDAFDIKEVLEDESAIKLLQTCAASWLYSRSLL----CGNLVAVPMLSEISIFLVIGANK 226
VD FD K+V + +S+L +++ ++ L
Sbjct: 30 VDNFDCKDVQD----------------MPKSILSKEEIDHIIMSKDAVSGTLRLFW---- 69
Query: 227 LPADLTNERSQPQVTESMDHESNAFVINHETKVY--LYPPLNAVSKSLREGTLPNAQ-IE 283
T Q ++ + FV Y L + + R+ ++ IE
Sbjct: 70 -----TLLSKQEEMVQ-------KFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIE 114
Query: 284 FQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKT 343
++ Q +K +S+ LK ++ L L RP K VL+ G G+GKT
Sbjct: 115 QRDRLYNDNQVFAKYN-VSRLQPYLK-------LRQALLEL--RPAKNVLIDGVLGSGKT 164
Query: 344 SLA--------RLCAHDSGV---NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVV 392
+A C D + NL N PE V + Q L D S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRS--- 217
Query: 393 FIDELDAIAPARKDGGEELSQRMVAT------LLNL-----------MDGVCRTDGVLVI 435
D I R + +R++ + LL L + C+ L+
Sbjct: 218 --DHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LL- 270
Query: 436 AATNRPDSIEPALRRPGRLDREIEIAVP--SPAQRLEILHALLSGMEHSLLDSEVEYLSM 493
T R + L ++ +P + +L L EV
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVL---- 323
Query: 494 ATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSR- 552
T+ + +A +R + D + +C +
Sbjct: 324 TTNPRRLSIIAES--------IR-------------------DGLATWDN-WKHVNCDKL 355
Query: 553 -NITESSRDCLDSAS-----------PCTSDLPTSLLSS--SLPLRGTVSEIADNFHN 596
I ESS + L+ A P ++ +PT LLS ++ V + + H
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 3e-16
Identities = 71/423 (16%), Positives = 135/423 (31%), Gaps = 97/423 (22%)
Query: 522 QTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSA-------SPCTSDLPT 574
+T L FE D + + DC +++ + + L S + T
Sbjct: 10 ETGEHQYQYKDILSVFE---DAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSK-DAVSGT 64
Query: 575 SLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMR 634
L +L + E+ F V + MS +K E PS M
Sbjct: 65 LRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMS----PIKTEQRQ---------PSMMT 109
Query: 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKH---QEAFKRIGTRPPTGILMFGPPGC 691
+ +E + D Q K V Q + ++A + RP +L+ G G
Sbjct: 110 RMYIEQRDRLYNDN--QVFAKYN----VSRLQPYLKLRQALLEL--RPAKNVLIDGVLGS 161
Query: 692 SKTLMARAVASEAGLNFLAVKGPELFSKW--VGESEKA------VRSLFAKARANAPSII 743
KT +A V ++F W + ++ L + N
Sbjct: 162 GKTWVALDVCLSYK--VQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPN----- 212
Query: 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQ------LLVELDGLHQRV-NVTVIAA------ 790
+ D + I+ + + R++ LLV L V N A
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLN----VQNAKAWNAFNLSCK 267
Query: 791 ---TNRPDKIDPALLRPGRFDRLLYVGPPNETDRE--EIFRIHLRKIPCSSDVNIRELAC 845
T R ++ L L T E + +L D ++L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLP- 319
Query: 846 LSEGCTGA--DISLI---CREAAISAIE--ENLDASRITMQHLKTAIRHVQPSEI-HSYK 897
E T +S+I R+ ++ + ++++ ++T +++++ ++P+E +
Sbjct: 320 -REVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFD 376
Query: 898 ELS 900
LS
Sbjct: 377 RLS 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 6e-11
Identities = 104/624 (16%), Positives = 191/624 (30%), Gaps = 168/624 (26%)
Query: 9 PFFVQAGNSDLSYHRDCSQIYPFF-QVLKNE-----VRLSSSLSYTMGCPLSGRTVFVYT 62
F A + DC + +L E + ++S T+ ++
Sbjct: 23 SVFEDAFVDNF----DCKDVQDMPKSILSKEEIDHIIMSKDAVS---------GTLRLFW 69
Query: 63 I----QSQFLTGLVNGSNKP-YNGEANHFSV-CTCQELHLEL-VPLRSRLKMNGAAFSKM 115
Q + + V + Y + + + + R RL + F+K
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 116 KVSAERSRDQLGNGI---DSSP-----------KTPMYQPRLSSQSVNQ----------L 151
VS + +L + + KT + S V L
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 152 ASPVSEDSVSKSL---------NWNSLNVDAFDIKEVLED-ESAIKLLQTCAASWLYSRS 201
+ S ++V + L NW S + + +IK + ++ ++ L S Y
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENC 246
Query: 202 LLCGNLVAVPMLSEISIF------LVIGANKLPADLTNERSQPQVTESMDHESNAFVINH 255
LL L+ V + F L+ K D + + + S+DH S
Sbjct: 247 LLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLT-PD 301
Query: 256 ETKVYLY----------PP---------LNAVSKSLREG--TLPN-AQIEFQNVQATVEQ 293
E K L P L+ +++S+R+G T N + + +E
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 294 DISKL--GGLSKEY---AIL-KDIIISSSVKSTLSSLGLRPTKGV------LLHGPPGTG 341
++ L K + ++ I + + LS + K LH
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLH------ 412
Query: 342 KTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALH----------EVFDSASQSAPAV 391
K SL + ++ + + E+E ALH + FDS P
Sbjct: 413 KYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-- 467
Query: 392 VFIDE---------LDAIAPARKDGGEELSQRMVATLLNL--MDGVCRTDGVLVIAATNR 440
++D+ L I + RMV L+ ++ R D A N
Sbjct: 468 -YLDQYFYSHIGHHLKNIEHPERM--TLF--RMV--FLDFRFLEQKIRHDST----AWNA 516
Query: 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500
SI L++ I P + + + L +E +L+ S+ +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK--------Y---- 564
Query: 501 ADLA--ALCNEAALVCLRRYSKIQ 522
DL AL E + + ++Q
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-17
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 820 DREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879
+R IF K+ + + ++ L ++ +GA I+ I +EA + A+ +N I
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RYVILQS 59
Query: 880 HLKTAIRHVQ 889
L+ A
Sbjct: 60 DLEEAYATQV 69
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 467 QRLEILHALLSGMEHSLLDSEV--EYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524
+R I + S M L E + L + GA +AA+ EA L +R+ +
Sbjct: 2 ERRLIFGTIASKMS---LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQ 58
Query: 525 SD 526
SD
Sbjct: 59 SD 60
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-16
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 821 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 880
R IFRIH + + + ++ L TGA++ +C EA + AI T +
Sbjct: 6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKV--ATEKD 63
Query: 881 LKTAIRHVQPSEIHSYKELSAKFQRLVH 908
A+ V I YK+ S+ + + +
Sbjct: 64 FLKAVDKV----ISGYKKFSSTSRYMQY 87
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* Length = 88 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-07
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 468 RLEIL--HALLSGMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRYSKIQT 523
R I H+ M ++ + + ++ GA+L ++C EA + +R K+ T
Sbjct: 6 RANIFRIHS--KSMS---VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 60
Query: 524 SSD 526
D
Sbjct: 61 EKD 63
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 5e-15
Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 45/250 (18%)
Query: 617 ELVDFEKARMKVRPSAMREVILE---VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFK 673
E+ K + S ++ + L+ + K + GQ + VE
Sbjct: 5 EVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVE--------LI 56
Query: 674 RIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAVRSL 731
+ +L+ GPPG KT +A A+A E G + F + G E++S + ++E +
Sbjct: 57 KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMEN 115
Query: 732 FAKA---RANAPSIIFFDEIDGLAAIR--------GKESDGVSVSDRVMS---------- 770
F +A R ++ E+ L GK V + +
Sbjct: 116 FRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPS 175
Query: 771 ---QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLL--YVGPPN---ETDRE 822
L E + + + A + + FD YV P +E
Sbjct: 176 IFESLQKE--RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKE 233
Query: 823 EIFRIHLRKI 832
I + L +
Sbjct: 234 IIQDVTLHDL 243
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 1e-12
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSA--- 384
+ VLL GPPGTGKT+LA A + G V + G EV S ++E L E F A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGL 122
Query: 385 SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM--------------------- 423
V+ E+ + P + + ++ ++ +
Sbjct: 123 RIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182
Query: 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSP 465
+ V D + + A + D E E VP P
Sbjct: 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLP 224
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN-----GPEVV-------SQNYGESEQAL 377
+ +L+GPPG GKT+ A L A + G ++ N ++ N
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 378 HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413
H V+ +DE+D ++ + G +L+Q
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ 173
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 56/312 (17%), Positives = 107/312 (34%), Gaps = 68/312 (21%)
Query: 627 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVE-WPQKHQEAFKRIGTRPPTG--- 682
K P+ +++V G + +L + W + +FK G
Sbjct: 32 KYAPTNLQQVC------------GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRA 79
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFL---A--VKGPELFSKWVGE--SEKAVRSLFAKA 735
+++GPPG KT A VA E G + L A V+ L + V +V F
Sbjct: 80 AMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHN 139
Query: 736 RANA-----PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 790
+I DE+DG++ DR + +L ++ + +I
Sbjct: 140 EEAQNLNGKHFVIIMDEVDGMSG-----------GDR---GGVGQLAQFCRKTSTPLILI 185
Query: 791 TNRPD--KIDPALLRPG----RFDRLLYVGPPNETDREEIFRIHLR-KIPCSSDVNIREL 843
N + K+ P +F R P + + + I +R K +V I L
Sbjct: 186 CNERNLPKMRP--FDRVCLDIQFRR-----PDANSIKSRLMTIAIREKFKLDPNV-IDRL 237
Query: 844 ACLSEGCTGADISLICREAAISAIEE-NLDASRITMQHLKTAIRHVQPSEIHSYKELSAK 902
+ G DI R I+ + + I +++ + + + +++ K
Sbjct: 238 IQTTRG----DI----R-QVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHK 288
Query: 903 -FQRLVHSNAEA 913
++S+ +
Sbjct: 289 MLDGQIYSDIGS 300
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 5e-07
Identities = 24/273 (8%), Positives = 72/273 (26%), Gaps = 48/273 (17%)
Query: 676 GTRPPTGILMF---GPPGCSKTLMARAV-------ASEAGLNFLAVK------------- 712
G +++ G G KT +A+ A++ GL
Sbjct: 45 GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTIL 104
Query: 713 -------GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS 765
G + + + + N ++ DE + +
Sbjct: 105 SLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSML----SSPRIAAED 160
Query: 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNET-DREEI 824
+ ++ E+ + + + + + + + + E+
Sbjct: 161 LYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSREL 220
Query: 825 FRIHLRKIPCS------SDVNIRELACLSEGCTGADISL-----ICREAAISAIEENLDA 873
+ I ++ ++ ++ + G D S + A A
Sbjct: 221 YTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMG--R 278
Query: 874 SRITMQHLKTAIRHVQPSEIHSYKELSAKFQRL 906
++ ++ A+ + + I +++ + L
Sbjct: 279 DSLSEDLVRKAVSENEAASIQTHELEALSIHEL 311
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 29/263 (11%), Positives = 71/263 (26%), Gaps = 43/263 (16%)
Query: 303 KEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC-------AHDSGV 355
E L I ++ + S G G GKT+LA+ A G+
Sbjct: 29 GEAEALARIYLNRLLSGAGLSDVNMIYGS---IGRVGIGKTTLAKFTVKRVSEAAAKEGL 85
Query: 356 NLFTVN--------------------GPEVVSQNYGESEQALHEVFDSASQSAPAVVFID 395
+ G + + + V + ++ +V +D
Sbjct: 86 TVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILD 145
Query: 396 ELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL----RRP 451
E ++ + + E+L + + + + + + + ++ +
Sbjct: 146 EFQSMLSSPRIAAEDLYTLL--RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVE 203
Query: 452 GRLDREIEIAVPSPAQRLEILHALLSGM--EHSLLDSEVEYLSMATHGFVGADLAA---- 505
++ ++ + + IL + +E +S G D +A
Sbjct: 204 SQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAI 263
Query: 506 -LCNEAALVCLRRYSKIQTSSDV 527
A + + V
Sbjct: 264 VALKMACEMAEAMGRDSLSEDLV 286
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 19/88 (21%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPA- 390
++L GPPGTGKT+LA + A + ++ ++ V S G E + E + A Q+ A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA--VTS---GVKE--IREAIERARQNRNAG 105
Query: 391 ---VVFIDEL--------DAIAPARKDG 407
++F+DE+ DA P +DG
Sbjct: 106 RRTILFVDEVHRFNKSQQDAFLPHIEDG 133
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARA 737
+ IL +GPPG KT +A +A A + + V K +R +AR
Sbjct: 49 HLHSMIL-WGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQ 100
Query: 738 NA----PSIIFFDEI 748
N +I+F DE+
Sbjct: 101 NRNAGRRTILFVDEV 115
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 35/264 (13%), Positives = 81/264 (30%), Gaps = 43/264 (16%)
Query: 675 IGTRPPTGILMFGPPGCSKTLMARAVASE------AGLNFLAVKGPELFSKW-------- 720
P I ++G G KT + + V S+ + + ++ + +
Sbjct: 40 YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99
Query: 721 -----VGESEKAVRSLFAK-----ARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770
V + ++ L+ + + +I DEID + ++
Sbjct: 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDD---------ILY 150
Query: 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLR-PGRFD-RLLYVGPPNETDREEIFRIH 828
+L ++ + ++ I TN +D R + P N + E+I
Sbjct: 151 KLS-RINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209
Query: 829 LRKIPCS---SDVNIRELA--CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKT 883
+ D I+ A E + R + A E + +++ +++
Sbjct: 210 AQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA--ERMKDTKVKEEYVYM 267
Query: 884 AIRHVQPSEIHSYKELSAKFQRLV 907
A ++ + +LV
Sbjct: 268 AKEEIERDRVRDIILTLPFHSKLV 291
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 31/274 (11%), Positives = 72/274 (26%), Gaps = 49/274 (17%)
Query: 669 QEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKGPELFS------ 718
+ G P + G PG KT+ R + F+ + G +
Sbjct: 34 GNWLRNPGHHYPR-ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG 92
Query: 719 ----------KWVGESEKAVRSLFAKA--RANAPSIIFFDEIDGLAAIRGKESDGVSVSD 766
G S +L + + + D+ LA
Sbjct: 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------PDIL 142
Query: 767 RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGR--FDRLLYVGPPNETDREEI 824
+L E D L + ++ + ++ ++ P + +I
Sbjct: 143 STFIRLGQEADKLGAF-RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201
Query: 825 FRIHLRKIPCSSDVN---IRELACLSEGCTGADIS--------LICREAAISAIEENLDA 873
+ + ++ +A ++ T D + I +A +A +
Sbjct: 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNG--R 259
Query: 874 SRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLV 907
I + ++ + + V ++L
Sbjct: 260 KHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLF 293
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 40/233 (17%)
Query: 313 ISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC----AHDSGVNLFTVNGPEVVS- 367
+ + + L + G L G PGTGKT R + +NG +
Sbjct: 29 LDILLGNWLRNPGHHY-PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87
Query: 368 ------------QNYGESEQALHEVFDS-----ASQSAPAVVFIDELDAIAPARKDGGEE 410
+ + E + + +D+
Sbjct: 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAF-----------N 136
Query: 411 LSQRMVATLLNLMD--GVCRTDGVLVIAATNRPDSIEPAL-RRPGRLDREIEIAVP-SPA 466
L+ +++T + L + ++ + + G + + + P +
Sbjct: 137 LAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKD 196
Query: 467 QRLEILHA-LLSGMEHSLLDSE-VEYLSMATHGFVGADLAALCNEAALVCLRR 517
Q +IL +G+ + ++ ++ T D A+ L R
Sbjct: 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL-FSKWVGESEKAV------RSL 731
P ILM GP G KT +AR +A A F+ V+ + +VG+ ++ +
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAG 108
Query: 732 FAKARANAPSIIFFDEIDGLAAIRGKESDGVS 763
A I+F DEID + VS
Sbjct: 109 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVS 140
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GESEQALHEVFDSASQSA 388
K +L+ GP G GKT +AR A + V + Y G+ ++ ++ A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 389 PA------VVFIDELDAIAPARKDGGEELSQRMVAT-LLNLMDG--------VCRTDGVL 433
+VFIDE+D I + G ++S+ V LL L++G + +TD +L
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170
Query: 434 VIAA 437
IA+
Sbjct: 171 FIAS 174
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 6e-06
Identities = 42/273 (15%), Positives = 73/273 (26%), Gaps = 73/273 (26%)
Query: 680 PTGILMFGPPGCSKTLMARAVASE-----------AGLNFLAVKGPELFSKW-------- 720
L G G KT +++ + +E + V E+
Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLA 104
Query: 721 ----------VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770
G + N +II+ DE+D L RG D V+
Sbjct: 105 GKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGG--------DIVLY 156
Query: 771 QLLVELDGLHQRVNVTVIAATNR---PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI 827
QLL N++VI +N D ++P +L + P + + I
Sbjct: 157 QLL------RSDANISVIMISNDINVRDYMEPRVL--SSLGPSVIFKPYDAEQLKFILS- 207
Query: 828 HLRKIPCSSDVNIRELACLSEGCTGADISLICREAA-------------ISAIEENLDAS 874
E + +S I +A A +
Sbjct: 208 -----------KYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256
Query: 875 RITMQHLKTAIRHVQPSEIHSYKELSAKFQRLV 907
I +H+ AI + + + +L
Sbjct: 257 IIRKEHVDKAIVDYEQERLIEAVKALPFHYKLA 289
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363
+LL GPPG GKT+LA + AH+ GVNL +GP
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 72
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP + E I GQ +K +L +E + +E + + L+FG
Sbjct: 6 LRPKTLDEYI------------GQERLKQKLRVYLEAAKARKEPLEHL--------LLFG 45
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPEL 716
PPG KT +A +A E G+N GP +
Sbjct: 46 PPGLGKTTLAHVIAHELGVNLRVTSGPAI 74
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363
VLL GPPG GKT+LA + A + N+ +GP
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 85
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 20/100 (20%)
Query: 617 ELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG 676
E ++ +RP ++ E I GQ VK +L A+E + E +
Sbjct: 8 ERTVYDSGVQFLRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV- 54
Query: 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716
L+ GPPG KT +A +ASE N GP L
Sbjct: 55 -------LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363
+L GP G GKT+LA + +++ N+ T P
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 620 DFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP 679
+E + +RPS I GQ +K L + +K E I
Sbjct: 18 TYETS---LRPSNFDGYI------------GQESIKKNLNVFIAAAKKRNECLDHI---- 58
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716
L GP G KT +A ++ E N P +
Sbjct: 59 ----LFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 308 LKDIIISSSVKSTLSSLGLRPTKG----VLLHGPPGTGKTSLARLCAHDSGVNLF 358
L +++ V L + +L GPPGTGKT+ A A D +
Sbjct: 16 LDEVVGQDEVIQRLKGYV---ERKNIPHLLFSGPPGTGKTATAIALARDLFGENW 67
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 3e-04
Identities = 42/267 (15%), Positives = 79/267 (29%), Gaps = 44/267 (16%)
Query: 675 IGTRPPTGILMFGPPGCSKTLMARAVASE--------------AGLNFLAVKGP------ 714
+ P+ L++G G KT +AR V +N + P
Sbjct: 39 LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98
Query: 715 --ELFSKWVGESEKAVRSLFAK-----ARANAPSIIFFDEIDGLAAIRGKESDGVSVSDR 767
E V + +V ++ + +R II DEID L G
Sbjct: 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG--------GQD 150
Query: 768 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPAL--LRPGRFDRLLYVGPPNETDREEIF 825
++ ++ L RV V+++ TN ++ ++ + L P +I
Sbjct: 151 LLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDIL 210
Query: 826 RIHLRKI---PCSSDVNIRELA--CLSEGCTGADISLICREAAISAIEENLDASRITMQH 880
+ + A E + R A A R+ +H
Sbjct: 211 ETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRR--EERVRREH 268
Query: 881 LKTAIRHVQPSEIHSYKELSAKFQRLV 907
+ +A ++ + +LV
Sbjct: 269 VYSARAEIERDRVSEVVRTLPLHAKLV 295
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 308 LKDIIISSSVKSTLSSLGLRPTKG----VLLHGPPGTGKTSLARLCAHD 352
L +++ V L + +L GPPGTGKT+ A A D
Sbjct: 16 LDEVVGQDEVIQRLKGYV---ERKNIPHLLFSGPPGTGKTATAIALARD 61
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 957 | |||
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 100.0 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 100.0 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 100.0 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 100.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 100.0 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.98 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.98 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.97 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.97 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.97 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.97 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.97 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.97 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.97 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.97 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.96 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.96 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.96 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.96 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.96 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.96 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.95 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.95 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.94 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.93 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.91 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.91 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.91 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.87 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.86 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.84 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.84 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.84 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.81 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.8 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.8 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.78 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.78 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.78 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.78 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.77 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.76 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.75 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.74 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.72 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.72 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.71 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.71 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.7 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.7 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.69 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.69 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.68 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.68 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.67 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.67 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.67 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.67 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.66 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.66 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.65 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.65 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.65 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.65 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.64 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.63 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.62 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.62 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.62 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.62 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.62 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.61 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.61 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.61 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.6 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.6 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.6 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.6 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.59 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.59 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.59 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.59 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.58 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.58 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.58 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.57 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.57 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.56 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.56 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.56 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.56 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.55 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.54 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.53 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.52 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.52 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.51 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.49 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.49 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.49 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.48 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.48 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.48 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.47 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.47 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.47 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.46 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.46 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 99.45 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.45 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.44 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.42 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.4 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 99.39 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.39 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.39 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 99.38 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.36 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.36 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.34 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.33 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.31 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.31 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.27 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.25 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.22 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.22 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.19 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.16 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.11 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 99.1 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.09 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.09 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.08 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.03 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 99.02 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.99 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.98 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 98.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 98.94 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.92 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.85 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 98.82 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 98.82 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.8 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.75 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 98.72 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.72 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 98.71 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.68 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.68 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 98.66 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.65 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.62 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.61 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.6 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 98.58 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.58 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.57 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.56 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 98.54 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.51 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.49 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.47 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.46 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 98.44 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.38 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.38 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.34 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 98.29 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.26 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.23 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.22 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.18 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.18 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.17 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.1 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 98.1 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.09 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 98.08 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 98.07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 98.06 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.05 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.04 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 98.03 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.03 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 98.01 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 98.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.99 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.99 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.98 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.98 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.98 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.98 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.97 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.96 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.95 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.95 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.94 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.93 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.92 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.91 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.91 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.9 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.9 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.89 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.88 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.87 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 97.87 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.87 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.87 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 97.86 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.86 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.85 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 97.85 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.84 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.84 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.84 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.83 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.82 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 97.82 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.81 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.8 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.8 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.79 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.78 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.78 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.77 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.77 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.76 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.75 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.75 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.75 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.74 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.72 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.72 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.71 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.7 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.7 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.7 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.7 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.7 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.69 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.69 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.68 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.68 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.68 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.68 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.67 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.67 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.66 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.66 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.66 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.65 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.64 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.64 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.64 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.63 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.62 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.62 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.59 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.57 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.57 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.56 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.54 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.54 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.54 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.54 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.54 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.54 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.53 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.51 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.49 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.48 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.48 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.45 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.45 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.43 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 97.42 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.42 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.42 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.41 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.39 | |
| 2jv2_A | 83 | Putative uncharacterized protein PH1500; AAA ATPas | 97.38 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.38 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.36 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.35 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.35 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.35 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.35 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 97.35 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.34 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.34 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.33 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.32 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.32 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.3 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.29 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 97.28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 97.28 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.28 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.27 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 97.26 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.25 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.25 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.25 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.25 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.23 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.23 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.23 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.2 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.19 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.18 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 97.17 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.17 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.15 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 97.15 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 97.12 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.11 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.1 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.09 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.09 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.05 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.03 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.03 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.01 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.01 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.0 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.98 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.97 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.96 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.95 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.95 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.94 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.93 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.91 | |
| 3qwz_A | 211 | Transitional endoplasmic reticulum ATPase; UBX, P9 | 96.9 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.89 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.89 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.89 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.88 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.87 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.86 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 96.84 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.84 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.83 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.83 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.82 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.82 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.8 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.78 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.77 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.77 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.77 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 96.74 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.74 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.71 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.69 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.68 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.67 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.65 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.65 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.63 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.63 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.62 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.61 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.61 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.6 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.59 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.59 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.57 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.56 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.54 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.54 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.54 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.53 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.53 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.52 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.51 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.51 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.5 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.5 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.48 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.48 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.47 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.46 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 96.46 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.45 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.44 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.44 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.43 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.41 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.41 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 96.4 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.39 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.37 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 96.37 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.36 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.36 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.36 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.35 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.34 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.34 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.32 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.32 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.32 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.31 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.3 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.29 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.26 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.24 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.24 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.23 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.23 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.23 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.22 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.22 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.21 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.21 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.2 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.2 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.2 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.19 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.19 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.16 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.16 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.16 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.15 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.14 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.14 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.14 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.14 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.14 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.14 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 96.13 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.12 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.12 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.12 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.11 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.11 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.11 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 96.11 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.1 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.1 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.09 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.09 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.09 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.09 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.08 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.08 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.08 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.05 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.03 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.03 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.03 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.02 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.02 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.02 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.0 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.99 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.97 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.97 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.97 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.96 |
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-96 Score=891.82 Aligned_cols=606 Identities=41% Similarity=0.706 Sum_probs=495.4
Q ss_pred HHHHHHHhhc--cCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCc
Q 002169 188 LLQTCAASWL--YSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPL 265 (957)
Q Consensus 188 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~ 265 (957)
++...++.+| .+|||..|+.+.++..+..+.|.|.+++|. +.++|+++|.+.+....
T Consensus 130 ~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~---------------------~~~~v~~~T~i~~~~~~ 188 (806)
T 3cf2_A 130 LFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEP 188 (806)
T ss_dssp HHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSS---------------------SEEECCTTSBCCBCSCC
T ss_pred HHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCC---------------------CCeEECCCcEEEEeccc
Confidence 3444555555 469999999999999999999999999886 46788899988764321
Q ss_pred ccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHH
Q 002169 266 NAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTS 344 (957)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTt 344 (957)
... .. ........+|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||||||||||||+
T Consensus 189 ~~~--~~-------------~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 189 IKR--ED-------------EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTL 253 (806)
T ss_dssp BCC--CT-------------TSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHH
T ss_pred cCc--cc-------------ccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHH
Confidence 100 00 011234568999999999999999999999887 88899999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 345 LARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 345 LaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
|||++|++++.+++.++++++.++|+|+++..++.+|+.|....|+||||||+|.|+++++...++..++++++|+.+|+
T Consensus 254 LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~md 333 (806)
T 3cf2_A 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp HHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHH
T ss_pred HHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988878888999999999999
Q ss_pred ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHH
Q 002169 425 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~ 504 (957)
++....+++||++||+++.||++++|+||||++|+++.|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.
T Consensus 334 g~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp HCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHH
T ss_pred cccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHH
Confidence 9988889999999999999999999999999999999999999999999999888766 677899999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchh
Q 002169 505 ALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLR 584 (957)
Q Consensus 505 ~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (957)
.+|++|++.|++|..........
T Consensus 413 ~Lv~eA~~~A~~r~~~~i~~~~~--------------------------------------------------------- 435 (806)
T 3cf2_A 413 ALCSEAALQAIRKKMDLIDLEDE--------------------------------------------------------- 435 (806)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcccccccccc---------------------------------------------------------
Confidence 99999999999987553221110
Q ss_pred hcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhc
Q 002169 585 GTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEW 664 (957)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~ 664 (957)
....+....+.++.+||..++..+.|+++++...++|+++|++|+|++++|+.|.+.+.|
T Consensus 436 --------------------~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~ 495 (806)
T 3cf2_A 436 --------------------TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp --------------------CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT
T ss_pred --------------------ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh
Confidence 011233345678899999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEE
Q 002169 665 PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 744 (957)
Q Consensus 665 ~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILf 744 (957)
|+++++.|.+++..+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|+.|+..+|||||
T Consensus 496 p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iif 575 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 575 (806)
T ss_dssp TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEE
T ss_pred hhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHH
Q 002169 745 FDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREE 823 (957)
Q Consensus 745 iDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~ 823 (957)
|||+|+++..|+.. +++....++++++||.+||++....+|+||+|||+|+.||+|++||||||+.|+|++|+.++|.+
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHH
T ss_pred chhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHH
Confidence 99999999988643 33456788999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-----------------------CCCCCHHH
Q 002169 824 IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD-----------------------ASRITMQH 880 (957)
Q Consensus 824 Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~-----------------------~~~It~~d 880 (957)
||+.++++.++..++++..||+.|+||||+||+++|++|++.|+++.++ ...|+++|
T Consensus 656 il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 735 (806)
T 3cf2_A 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDH 735 (806)
T ss_dssp TTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----C
T ss_pred HHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHH
Confidence 9999999999999999999999999999999999999999999988542 12589999
Q ss_pred HHHHHHhhCCC----chHHHHHHHHHHHHHh
Q 002169 881 LKTAIRHVQPS----EIHSYKELSAKFQRLV 907 (957)
Q Consensus 881 ~~~al~~~~p~----~~~~y~~~~~~~~~~v 907 (957)
|++|+++++|+ +++.|++|.+.|++.-
T Consensus 736 f~~al~~~~pSvs~~~l~~y~~~~~~f~~~~ 766 (806)
T 3cf2_A 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQSR 766 (806)
T ss_dssp CTTTC---------------CCCC-------
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999998 7789999999887753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-51 Score=460.84 Aligned_cols=262 Identities=41% Similarity=0.703 Sum_probs=246.1
Q ss_pred cCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 628 ~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+.|........+.|+++|+||+|++++|++|++.+.||+++|+.|.++|+++++|+|||||||||||++|+|+|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 44566667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEE
Q 002169 708 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 708 ~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
|+.++++++.++|+|++++.+|.+|..|+..+||||||||+|+++..|....++ .....+++++||++||++....+|+
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 999999999999999999999999999999999999999999999888654333 3455788999999999998888999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|+.|+||||+||+++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+++. ...|+.+||+.|++++.+.
T Consensus 370 ir~~--~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 370 LRER--RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHTT--CSBCCHHHHHHHHHHHHHH
T ss_pred HHcC--CCCcCHHHHHHHHHHHhCc
Confidence 9885 6789999999999987654
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=441.37 Aligned_cols=254 Identities=37% Similarity=0.663 Sum_probs=239.6
Q ss_pred HHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 636 ~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
.+.+.|+++|+||+|++++|++|++.+.+|++++++|.++|+++++|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|..... +.....++++++|++||+.....+++||+|||++
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 999999999999999999999999999999999999998865433 2345578899999999999888899999999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~ 874 (957)
+.||||++||||||+.|+|++|+.++|.+||+.+++++++..+++++.+|..|+||||+||+++|++|++.|+++. ..
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--RM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 66
Q ss_pred CCCHHHHHHHHHhhCCC
Q 002169 875 RITMQHLKTAIRHVQPS 891 (957)
Q Consensus 875 ~It~~d~~~al~~~~p~ 891 (957)
.|+.+||.+|++++.++
T Consensus 410 ~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKN 426 (437)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCC
Confidence 79999999999887654
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=441.56 Aligned_cols=260 Identities=37% Similarity=0.658 Sum_probs=242.9
Q ss_pred chhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 630 PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 630 ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
|........+.|+++|+||+|++++|+.|++.+.+|+++++.|.++|+++++|+|||||||||||++|+|+|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 33344455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
.+++++++++|+|++++.++.+|..|+..+||||||||+|+++..|...+.. .....+++++||.+||+.....+++||
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 9999999999999999999999999999999999999999999888554332 344578899999999999888899999
Q ss_pred EecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 002169 789 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIE 868 (957)
Q Consensus 789 ~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~ 868 (957)
+|||+|+.||||++||||||+.|+|++|+.++|.+||+.++++++...++++..+|..|+||||+||+++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCHHHHHHHHHhhCCC
Q 002169 869 ENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 869 ~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+. ...|+.+||..|++++.+.
T Consensus 405 ~~--~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 405 DD--RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp TT--CSSBCHHHHHHHHHHHHHT
T ss_pred cC--CCCCCHHHHHHHHHHHHhc
Confidence 86 5679999999999998775
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=437.15 Aligned_cols=252 Identities=40% Similarity=0.672 Sum_probs=237.8
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++++|+|||||||||||++|+|||++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.++|+|++++.+|.+|..|+..+||||||||+|+++..|.....+ .....++++++|.+||+.....+++||+|||+++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 999999999999999999999999999999999999888654332 3445678899999999998888999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.||+|++||||||+.|+|++|+.++|.+||+.+++++++..+++++.||+.|+||||+||+++|++|++.|+++. ...
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~--~~~ 437 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKV 437 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT--CSS
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 678
Q ss_pred CCHHHHHHHHHhhCC
Q 002169 876 ITMQHLKTAIRHVQP 890 (957)
Q Consensus 876 It~~d~~~al~~~~p 890 (957)
|+.+||..|++++.+
T Consensus 438 it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 438 ATEKDFLKAVDKVIS 452 (467)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999988753
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=438.69 Aligned_cols=255 Identities=38% Similarity=0.624 Sum_probs=240.3
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
....+.|+++|+||+|++++|+.|++.+.+|+.+++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++.++|+|++++.++.+|..|+..+||||||||+|+++..|.....+ .....+++++||++||++....+|+||+|||+
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999888554332 23456788999999999988889999999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|+.|+||||+||+++|++|++.|+++. .
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--~ 407 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--Q 407 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT--C
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886 6
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 002169 874 SRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 874 ~~It~~d~~~al~~~~p~ 891 (957)
..|+.+||.+|+.+++|+
T Consensus 408 ~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SSBCHHHHHHHHHSCSSS
T ss_pred CCcCHHHHHHHHHHHhCC
Confidence 689999999999999886
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=428.45 Aligned_cols=251 Identities=37% Similarity=0.618 Sum_probs=237.2
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.|+++|+||+|++++|+.|++.+.+|+.++++|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.++|+|++++.++.+|..|+..+||||||||+|+++..|..... +.....+++++||++||++....+++||+|||+++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988855433 33456789999999999998888999999999999
Q ss_pred CCChhhhCCCCcceecccC-CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 002169 796 KIDPALLRPGRFDRLLYVG-PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~-~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~ 874 (957)
.||||++||||||+.|+|| +|+.++|..||+.+++++++..+++++.+|..|+||||+||+++|++|++.|+++. ..
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--~~ 400 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RY 400 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--CC
Confidence 9999999999999999996 89999999999999999999999999999999999999999999999999999986 66
Q ss_pred CCCHHHHHHHHHhhC
Q 002169 875 RITMQHLKTAIRHVQ 889 (957)
Q Consensus 875 ~It~~d~~~al~~~~ 889 (957)
.|+.+||++|+.++.
T Consensus 401 ~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 401 VILQSDLEEAYATQV 415 (428)
T ss_dssp SBCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhh
Confidence 899999999998753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=406.40 Aligned_cols=260 Identities=35% Similarity=0.564 Sum_probs=227.9
Q ss_pred CCceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEE
Q 002169 255 HETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVL 333 (957)
Q Consensus 255 ~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vL 333 (957)
+.+.|.+..........++....|..... .....+.++|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||
T Consensus 109 ~~~~v~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvL 186 (405)
T 4b4t_J 109 ASQRVCLRSDSYMLHKVLENKADPLVSLM--MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVI 186 (405)
T ss_dssp SSCEEEEETTTCSCCEECCCCCSCCTTSC--EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEE
T ss_pred CcceeeeecccceeeeecCcccCchhhhc--cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceE
Confidence 34555555544444444444333332221 233456789999999999999999999999887 888999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---ch
Q 002169 334 LHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EE 410 (957)
Q Consensus 334 L~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~ 410 (957)
||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|...+||||||||+|+++++|..+. +.
T Consensus 187 L~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~ 266 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDS 266 (405)
T ss_dssp EESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGG
T ss_pred EeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886543 33
Q ss_pred HHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHH
Q 002169 411 LSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEY 490 (957)
Q Consensus 411 ~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~ 490 (957)
...+++.+|++.||++....+++||+|||+|+.||||++||||||+.|+|+.|+.++|.+||+.+++++++. .+.+++.
T Consensus 267 ~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~ 345 (405)
T 4b4t_J 267 EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRK 345 (405)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHH
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHH
Confidence 567889999999999988899999999999999999999999999999999999999999999999998766 6678999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+|..|+||+|+||.++|++|++.|+++
T Consensus 346 lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 346 VAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999875
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=398.70 Aligned_cols=229 Identities=35% Similarity=0.591 Sum_probs=214.7
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...+.++|++|||++++++.|++.|.+|+.+ +.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 3456789999999999999999999999887 888999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++|+|++++.++.+|+.|...+||||||||+|++++.|.... +....+++.+|++.||++....+++||+|||+++.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 999999999999999999999999999999999999885543 34567888999999999988899999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
||||++||||||+.|+|+.|+.++|.+||+.+++++.+. .+.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998766 6678999999999999999999999999999875
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=393.86 Aligned_cols=230 Identities=32% Similarity=0.569 Sum_probs=214.8
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...+.++|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 3456789999999999999999999999887 888999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++|+|++++.++.+|+.|...+||||||||+|.++.+|...+ .....+++.+++..||+.....+++||+|||+++.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 999999999999999999999999999999999999886544 23556788899999999988899999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
||||++||||||+.|+|+.|+.++|.+||+.+++++.+. .+.+++.||..|+||+|+||.++|++|++.|+++.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~ 434 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 434 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999998776 56779999999999999999999999999998763
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=396.91 Aligned_cols=228 Identities=36% Similarity=0.599 Sum_probs=213.9
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+.++|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 456789999999999999999999999887 8889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+|+|+++..++.+|..|....||||||||+|+++++|...+ +....+++.+||+.||++....+++||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999999885543 344577889999999999888899999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
|||++||||||+.|+|+.|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998765 6678999999999999999999999999999875
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=396.64 Aligned_cols=229 Identities=38% Similarity=0.610 Sum_probs=214.0
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...+..+|++|||++++++.|++.|.+|+.+ +.|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 3456789999999999999999999999987 888999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCc---hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE---ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~---~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++|+|++++.++.+|+.|....||||||||+|+++++|..... ....+++.+|++.||++....+++||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 9999999999999999999999999999999999998865432 3456788999999999988889999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
||||++||||||+.|+|+.|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999988765 5677999999999999999999999999999876
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=429.18 Aligned_cols=299 Identities=41% Similarity=0.694 Sum_probs=266.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
..|.++|+||+|+++++++|++.+.+|+++++.|..++..+|+|+|||||||||||++||++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+|+|++++.++.+|+.|+..+||||||||+|++++.|... ......+++++|+.+|+++....+|+||+|||+++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~--~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC--CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC--CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999999887544 33567899999999999998888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc-------
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL------- 871 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~------- 871 (957)
++++|||||++.|+++.|+.++|.+||+.+++++++..++++..+|..|+||+|+||.++|++|++.|+++..
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred --------CCCCCCHHHHHHHHHhhCCC---------------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhh
Q 002169 872 --------DASRITMQHLKTAIRHVQPS---------------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGS 928 (957)
Q Consensus 872 --------~~~~It~~d~~~al~~~~p~---------------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~ 928 (957)
....|+.+||..|+..++|+ ++..++..++.+++.+..+......+....
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g------- 507 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG------- 507 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-------
T ss_pred cccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-------
Confidence 12357899999999999886 233567778888887776655544432221
Q ss_pred hhhhccCCceEEEeecccCCccc
Q 002169 929 NMWTLIKSISLFLCRFPAGLSQS 951 (957)
Q Consensus 929 ~L~~~~k~~~~fl~~~~~~~g~~ 951 (957)
.++....|+.||+|.|||
T Consensus 508 -----~~~~~gvLl~GPPGtGKT 525 (806)
T 3cf2_A 508 -----MTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp -----CCCCSCCEEESSTTSSHH
T ss_pred -----CCCCceEEEecCCCCCch
Confidence 122335789999999997
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=386.97 Aligned_cols=229 Identities=35% Similarity=0.592 Sum_probs=214.3
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+..+|++|||++++|+.|++.|.+|+.+ +.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 456789999999999999999999999887 8889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+|+|+++..++.+|+.|....||||||||+|++++.|.... +....+++.+|++.||++....+++||+|||+++.|
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999874432 346678999999999999888999999999999999
Q ss_pred hhhhhCCCCcceeeeec-CCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 445 EPALRRPGRLDREIEIA-VPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~-~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
|||++||||||+.|+|+ .|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.++|++|++.|+++.
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999996 899999999999999998765 67789999999999999999999999999998763
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=359.15 Aligned_cols=272 Identities=46% Similarity=0.881 Sum_probs=248.7
Q ss_pred hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe
Q 002169 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 712 (957)
Q Consensus 633 ~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~ 712 (957)
+|+++.+.|.++|++|+|++++++.+.+.+.+|+.+++.|..+++.+++++||+||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
++++.++|+|+.++.++.+|..|+...|+||||||+|.+...++.. ........+++++++..|+++....+++||++|
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 9999999999999999999999999999999999999998876543 222345678999999999988777799999999
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
|+++.+|++++|+|||++.+++++|+.++|.+|++.++++.++..++++..++..+.||+|+||+++|++|++.|..+.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999987643
Q ss_pred C-----------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 872 D-----------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 872 ~-----------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
. ...|+.+||..|++.++|+ ++..|+.|.+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 0 1368999999999999988 5678888888763
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=340.60 Aligned_cols=252 Identities=45% Similarity=0.805 Sum_probs=216.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.++|+||+|++++|+.|.+.+.+|+.+++.++++++.+++|++|+|||||||||+|++||++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.|.|+.++.++.+|..++...|+++|+||+|.+...++.. ......+++++++.+|++......++++++||+|+.+|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 9999999999999999999999999999999987655332 12234578899999999988878899999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHhcC-
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLS--EGCTGADISLICREAAISAIEENLD- 872 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~---~~~~~~~~l~~la~~t--~g~sg~dl~~l~~eA~~~a~~~~~~- 872 (957)
++++||||||+.|++++|+.++|.+||+.++++ .+...++++..+|..+ +||+|+||.++|++|++.|+++...
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 4556789999999875 5999999999999999999987531
Q ss_pred --------CCCCCHHHHHHHHHhhCCCc
Q 002169 873 --------ASRITMQHLKTAIRHVQPSE 892 (957)
Q Consensus 873 --------~~~It~~d~~~al~~~~p~~ 892 (957)
...|+.+||++|+++++|+.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCCC
Confidence 34699999999999999983
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=346.57 Aligned_cols=263 Identities=37% Similarity=0.668 Sum_probs=236.5
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-CCcEEEEeCCC
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGPE 715 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~~~~i~v~~~~ 715 (957)
+.+.|+++|+||+|++++|+.|++.+.+|+++++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35779999999999999999999999999999999875 36778999999999999999999999999 89999999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN~~ 794 (957)
+.++|+|++++.++.+|..|+..+|+||||||+|.+...+... ......+++++++..|+++. ...+++||++||++
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999998776543 33567899999999999875 35689999999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD- 872 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~- 872 (957)
+.+|++++| ||+..+++++|+.++|.+|++.++++.+.. .+.++..+++.++||+|+||..+|++|++.|+++...
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999887754 5678999999999999999999999999999987421
Q ss_pred ----------------------------------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHH
Q 002169 873 ----------------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAK 902 (957)
Q Consensus 873 ----------------------------------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~ 902 (957)
...|+++||..|++.++|+ +.+.|++|.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~ 317 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTED 317 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1369999999999999999 56788887776
Q ss_pred HH
Q 002169 903 FQ 904 (957)
Q Consensus 903 ~~ 904 (957)
|.
T Consensus 318 ~~ 319 (322)
T 1xwi_A 318 FG 319 (322)
T ss_dssp TC
T ss_pred Hc
Confidence 53
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=359.16 Aligned_cols=347 Identities=38% Similarity=0.616 Sum_probs=279.8
Q ss_pred HHhhcc--CCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCcccccc
Q 002169 193 AASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSK 270 (957)
Q Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~~ 270 (957)
.|.|.. .+++..|+.+.+...+....|.+....+. ....+.+.|.+.+......
T Consensus 135 ~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~t~~~~~~~~~~--- 190 (489)
T 3hu3_A 135 LKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEPIK--- 190 (489)
T ss_dssp HHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESS---------------------SEEEECTTCEEECCSSCBC---
T ss_pred hHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCC---------------------CceEEcCCeEEEEccCccc---
Confidence 455554 37888999999988888888888777664 4678888998886432110
Q ss_pred cccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHH
Q 002169 271 SLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLC 349 (957)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaral 349 (957)
.... ........|++|+|++++++.|++++..++.+ +.|..+++.++.++||+||||||||++|+++
T Consensus 191 --------~~~~----~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 191 --------REDE----EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp --------HHHH----HHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHH
T ss_pred --------cccc----ccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHH
Confidence 0000 01122357889999999999999999998776 7788899999999999999999999999999
Q ss_pred HHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC
Q 002169 350 AHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 429 (957)
Q Consensus 350 A~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~ 429 (957)
|++++.+|+.++|.++.+.+.|+.+..++.+|+.|....|++|||||+|.+.++++....+...+++.+|+..|++....
T Consensus 259 a~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp HHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999888777788899999999999998888
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
.+++||++||+++.++++++|+|||++.++++.|+.++|.+||+.+++.+... .+.+++.++..+.||+++||..+|++
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~ 417 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSE 417 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887765 56678999999999999999999999
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHH
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSE 589 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (957)
|++.++++..........
T Consensus 418 A~~~a~r~~~~~i~~~~~-------------------------------------------------------------- 435 (489)
T 3hu3_A 418 AALQAIRKKMDLIDLEDE-------------------------------------------------------------- 435 (489)
T ss_dssp HHHHHHHTTTTTCCTTCS--------------------------------------------------------------
T ss_pred HHHHHHHhcccccccccc--------------------------------------------------------------
Confidence 999999875432211100
Q ss_pred HHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHH
Q 002169 590 IADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQRE 653 (957)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~ 653 (957)
.+..+......++++||..++..++|+.++++.+++|+++|+||||..+
T Consensus 436 ---------------~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 436 ---------------TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp ---------------SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ---------------ccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 0111223446789999999999999999999999999999999999764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.14 Aligned_cols=266 Identities=38% Similarity=0.707 Sum_probs=237.1
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
....+.|+++|++|+|++++++.|.+.+.+|+.+++.+.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4456789999999999999999999999999999998876 567788999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN~ 793 (957)
++.++|+|+.++.++.+|..|+...|+||||||+|.+...+... ......+++++++..|++.. ...+++||++||+
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 99999999999999999999999999999999999998766432 34577899999999999884 5568999999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~ 872 (957)
++.+|++++| ||+..+++++|+.++|.+|++.++.+.+.. .+.++..++..++||+++||.++|++|++.|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999987754 5678999999999999999999999999999987421
Q ss_pred -----------------------------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHHH
Q 002169 873 -----------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 905 (957)
Q Consensus 873 -----------------------------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~~ 905 (957)
...|+++||.+|++.++|+ +++.|++|.+.|..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 1459999999999999998 67788888887754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=338.38 Aligned_cols=267 Identities=37% Similarity=0.689 Sum_probs=226.9
Q ss_pred hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 634 ~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
..+..+.|.++|++|+|++++++.|.+++.+|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 34456778999999999999999999999999999999887 56788999999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc-CCcEEEEEecC
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-RVNVTVIAATN 792 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~-~~~v~VI~aTN 792 (957)
+++.+.|+|+.++.++.+|..|+...|+||||||+|.+...+... ......+++++|+..|++... ..+++||++||
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn 195 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 195 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEES
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecC
Confidence 999999999999999999999999999999999999998766433 345678899999999998753 56899999999
Q ss_pred CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 793 ~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+++.+|++++| ||+..+++++|+.++|.+|++.++.+.+.. .+.++..|++.++||+|+||.++|++|++.|+++..
T Consensus 196 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 196 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp CGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999987753 567899999999999999999999999999998732
Q ss_pred -----------------------------------------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHHH
Q 002169 872 -----------------------------------------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 905 (957)
Q Consensus 872 -----------------------------------------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~~ 905 (957)
....|+++||..|++.++|+ ++..|++|.+.|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 274 SATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp HCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred HhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 12359999999999999998 56788888887743
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=334.50 Aligned_cols=248 Identities=44% Similarity=0.748 Sum_probs=223.7
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|+||+|++++++++++.+.+ +.+++.+.+++.+.++|+||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999999876 678889999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
|+|.....++.+|+.|+..+||||||||||.+...++.. .+......+++++|+.+|+++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999998776432 1223345678999999999887777999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
++++|||||++.|++++|+.++|.+|++.++++.++..++++..+++.+.||+|+||+++|++|++.|.++. ...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--RDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--CCeecH
Confidence 999999999999999999999999999999999988888999999999999999999999999999998764 567999
Q ss_pred HHHHHHHHhhCC
Q 002169 879 QHLKTAIRHVQP 890 (957)
Q Consensus 879 ~d~~~al~~~~p 890 (957)
+||..++.++.+
T Consensus 247 ~dl~~al~~v~~ 258 (476)
T 2ce7_A 247 KDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999998865
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=349.24 Aligned_cols=441 Identities=19% Similarity=0.268 Sum_probs=303.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+++ ....+.++||+||||||||++|+++|..+ +..++.++.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVL------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHH------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHH------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 46788999999998887773 23457789999999999999999999886 667888888
Q ss_pred cccc--ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 363 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 363 ~~l~--~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
..+. ..+.|+.+..++.+|+.+....++||||||+|.+.+.+..... ... +.+.+..+...+++.+|++||.
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~----~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVD----AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHH----HHHHHSSCSSSCCCEEEEEECH
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHH----HHHHHHHHHhCCCeEEEEEeCc
Confidence 7776 3578899999999999998878899999999999876543221 122 2334444445678899999987
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcCCC-----cHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGF-----VGADLAAL 506 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~g~-----~gaDi~~l 506 (957)
++ .+|+++.| ||. .+.++.|+.+++.+|++.++.. ....+++..++.++..+.+| .+..+..+
T Consensus 325 ~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~l 401 (758)
T 1r6b_X 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_dssp HHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHH
T ss_pred hHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHH
Confidence 53 57899998 997 5999999999999999987654 34556777788877766553 44566777
Q ss_pred HHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhc
Q 002169 507 CNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGT 586 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (957)
+.+|+..+... ....
T Consensus 402 ld~a~~~~~~~--~~~~--------------------------------------------------------------- 416 (758)
T 1r6b_X 402 IDEAGARARLM--PVSK--------------------------------------------------------------- 416 (758)
T ss_dssp HHHHHHHHHHS--SSCC---------------------------------------------------------------
T ss_pred HHHHHHHHhcc--cccc---------------------------------------------------------------
Confidence 77765433110 0000
Q ss_pred HHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCch---h----hhhHHhhcCCccccccCChHHHHHHHH
Q 002169 587 VSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPS---A----MREVILEVPKVKWEDVGGQREVKTQLM 659 (957)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps---~----~~~~~~e~p~v~~~di~G~~~vk~~l~ 659 (957)
....++.+++..+....... . .......+...-.++++|++++++.+.
T Consensus 417 -------------------------~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~ 471 (758)
T 1r6b_X 417 -------------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALT 471 (758)
T ss_dssp -------------------------CCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHH
T ss_pred -------------------------cCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 00011222222221111000 0 000000111112356899999999988
Q ss_pred HHHhchhhcHHHHHhcCC----CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc------------cccc
Q 002169 660 EAVEWPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK------------WVGE 723 (957)
Q Consensus 660 e~i~~~~~~~~~~~~l~~----~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~------------~vg~ 723 (957)
.++... ..|. +|..++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 472 ~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~ 543 (758)
T 1r6b_X 472 EAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_dssp HHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHH
T ss_pred HHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCc
Confidence 877532 1232 233469999999999999999999999999999999887543 4443
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc---------CCcEEEEEecCCC
Q 002169 724 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------RVNVTVIAATNRP 794 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~---------~~~v~VI~aTN~~ 794 (957)
.+. ..+...++...++|||||||+.+ ...+++.|++.|+...- ..+++||+|||..
T Consensus 544 ~~~--~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~ 608 (758)
T 1r6b_X 544 DQG--GLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_dssp HHT--THHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSS
T ss_pred ccc--chHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcc
Confidence 322 22344555566789999999955 46688899999985321 1468899999975
Q ss_pred C-------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---Cccc
Q 002169 795 D-------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVN 839 (957)
Q Consensus 795 ~-------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~ 839 (957)
. .++|++++ ||+.+|.|++|+.+++..|++.++.+. +.. .+..
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a 686 (758)
T 1r6b_X 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEA 686 (758)
T ss_dssp CC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHH
T ss_pred hhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHH
Confidence 4 56889998 999999999999999999999887632 111 2233
Q ss_pred HHHHHHHc--cCCcHHHHHHHHHHHHHHHHHH
Q 002169 840 IRELACLS--EGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 840 l~~la~~t--~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
++.++... ..+.+|+++++++.++..++.+
T Consensus 687 ~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 687 RNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 55566543 3556889999998887765544
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=339.32 Aligned_cols=264 Identities=36% Similarity=0.664 Sum_probs=225.0
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-CCcEEEEeC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKG 713 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~~~~i~v~~ 713 (957)
.+..+.|.++|++|+|++++++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3445679999999999999999999999999999988875 35677999999999999999999999999 899999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecC
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATN 792 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN 792 (957)
+++.+.|+|++++.++.+|..++...|+||||||+|.+...+... ......+++++++..|++.. ...+++||+|||
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 999999999999999999999999999999999999998766443 34567899999999999875 356899999999
Q ss_pred CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 793 ~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+++.+|++++| ||+..+++++|+.++|..|++.++.+.+.. .+.++..|+..++||+|+||..+|++|++.|+++..
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887753 567899999999999999999999999999998632
Q ss_pred C-----------------------------------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHH
Q 002169 872 D-----------------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELS 900 (957)
Q Consensus 872 ~-----------------------------------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~ 900 (957)
. ...|+++||..|++.++|+ +++.|++|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~ 437 (444)
T 2zan_A 358 SATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFT 437 (444)
T ss_dssp HCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHT
T ss_pred hhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 1 1368999999999999998 556777766
Q ss_pred HHH
Q 002169 901 AKF 903 (957)
Q Consensus 901 ~~~ 903 (957)
+.|
T Consensus 438 ~~~ 440 (444)
T 2zan_A 438 EDF 440 (444)
T ss_dssp SSC
T ss_pred HHH
Confidence 544
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=310.41 Aligned_cols=229 Identities=40% Similarity=0.640 Sum_probs=193.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|||++++++.|++.+.+++.+ +.+..+++..++|++|+||||||||||++++|++++..++.+++.++.+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 3467899999999999999999888776 888999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
.++.+..++.+|+.+....|+++|+||+|.++..+.........++..+++..|++......++++++||+|+.+|++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 99999999999999988889999999999988765432222234677889999999887888999999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHHcCCC-C-CCChHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALLSGME-H-SLLDSEVEYLSMAT--HGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~-~-~l~~~~l~~La~~t--~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
||||||+.|+++.|+.++|.+||+.+++... . ...+.+++.+|..+ +||+|+||..+|++|++.|+++..
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886522 1 12566789999874 599999999999999999998753
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=308.93 Aligned_cols=228 Identities=31% Similarity=0.553 Sum_probs=209.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|+|++.+++.|++.+.+|+.+..+..-+..+++++|||||||||||++|+++|+++ +.+++.++++++.+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence 356789999999999999999999988744433346788999999999999999999999999 8999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchhhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~al 448 (957)
.|+.+..++.+|+.+....|+||||||+|.+++.+.........+++.+|+..|+++. ...+++||++||+++.+|+++
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al 166 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHH
Confidence 9999999999999999999999999999999998877766778899999999999975 357899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+| ||+..++++.|+.++|.+|++.++......+++.+++.++..++||+|+||..+|++|++.++++...
T Consensus 167 ~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 167 RR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp HH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred Hh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999888888999999999999999999999999999999998754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=305.49 Aligned_cols=263 Identities=44% Similarity=0.772 Sum_probs=228.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.++|++++|++++++.+.+.+.+++.+++.+..++..++.++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.|.....++.+|..+....|+||||||+|.+...+..... ......+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999999876644321 1223456677788888877777789999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|++||+..++++.|+.++|.+|++.++++..+..+.++..++..+.||+++|++.+|++|...|+.+. ...|+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~--~~~I~ 247 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL--RDYVT 247 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCcCC
Confidence 9999999999999999999999999999999999888888899999999999999999999999999998875 56799
Q ss_pred HHHHHHHHHhhCCC------chHHHHHHHHHH
Q 002169 878 MQHLKTAIRHVQPS------EIHSYKELSAKF 903 (957)
Q Consensus 878 ~~d~~~al~~~~p~------~~~~y~~~~~~~ 903 (957)
.+|+.+|+..+.+. ....|..|...+
T Consensus 248 ~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
T 3h4m_A 248 MDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLE 279 (285)
T ss_dssp HHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHHHHhccccccCCchHHHHHHHHh
Confidence 99999999876432 344555555443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=299.41 Aligned_cols=248 Identities=39% Similarity=0.699 Sum_probs=219.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.+..+|++|+|++++++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|++++.+++.+++.++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 35788999999999999999998876 67778888888899999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.|...+.++.+|..|....|+++||||+|.+...++... .+.....+.+++++..+++.....+++||++||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999999999999999999999999999999987654321 12233457889999999988777789999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|+|||++.+++++|+.++|.+|++.++++.++..+.++..+++.+.||+++||.++|++|+..|..+. ...|+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~i~ 241 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVS 241 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCccc
Confidence 9999999999999999999999999999999999988888889999999999999999999999999998775 56899
Q ss_pred HHHHHHHHHhhC
Q 002169 878 MQHLKTAIRHVQ 889 (957)
Q Consensus 878 ~~d~~~al~~~~ 889 (957)
.+||+.|+..+.
T Consensus 242 ~~~~~~a~~~~~ 253 (257)
T 1lv7_A 242 MVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=341.01 Aligned_cols=485 Identities=20% Similarity=0.253 Sum_probs=294.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+++.. ....++||+||||||||++|+++|..+ +..++.+++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 4678899999999998887422 345689999999999999999999987 778888877
Q ss_pred ccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 363 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 363 ~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
...|.|+.+..++.+|+.+....|+|||||. .....+.|+..| ..+.+.+|++||+.+
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~---------------~~~~~~~L~~~l----~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------------AIDASNILKPSL----ARGELQCIGATTLDE 302 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC-----------------------CCCT----TSSSCEEEEECCTTT
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEcC---------------chhHHHHHHHHH----hcCCEEEEeCCChHH
Confidence 4567889999999999999988899999990 011222333333 367899999999988
Q ss_pred -----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcC-----CCcHHHHHHHHH
Q 002169 443 -----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATH-----GFVGADLAALCN 508 (957)
Q Consensus 443 -----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~-----g~~gaDi~~l~~ 508 (957)
.++++++| ||. .|.|+.|+.+++.+|++.++.. ....+++..+..++..++ ++.+.+...++.
T Consensus 303 ~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 303 YRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp THHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHH
Confidence 79999999 994 5999999999999999987766 455678888888877654 556677777888
Q ss_pred HHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHH
Q 002169 509 EAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVS 588 (957)
Q Consensus 509 ~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (957)
+|+..+..+.......-..+ .+.+............ .........+.....
T Consensus 380 ~a~~~~~~~~~~~p~~~~~l----------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 430 (758)
T 3pxi_A 380 EAGSKVRLRSFTTPPNLKEL----------------------EQKLDEVRKEKDAAVQ-------SQEFEKAASLRDTEQ 430 (758)
T ss_dssp HHHHHHHHHTTC--CCTHHH----------------------HHHHHHHHHHHHHHHH-------HCCSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCcchhhH----------------------HHHHHHHHHHHHHHHh-------CcCHHHHHHHHHHHH
Confidence 77665533321100000000 0000000000000000 000000000000000
Q ss_pred HHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchh---hh----hHHhhcCCccccccCChHHHHHHHHHH
Q 002169 589 EIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA---MR----EVILEVPKVKWEDVGGQREVKTQLMEA 661 (957)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~---~~----~~~~e~p~v~~~di~G~~~vk~~l~e~ 661 (957)
.+........ ..+..........++.+++.........-. +. +........-.++++|++++++.+.+.
T Consensus 431 ~~~~~l~~~~----~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~ 506 (758)
T 3pxi_A 431 RLREQVEDTK----KSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKA 506 (758)
T ss_dssp HHHHHHHHHH----SGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHH
Confidence 0000000000 000000001112344455544443322110 00 000111122246799999999999888
Q ss_pred HhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhC
Q 002169 662 VEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN 738 (957)
Q Consensus 662 i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~ 738 (957)
+....... ....+|..++||+||||||||++|+++|..+ +.+|+.++++++...+... ...+...++..
T Consensus 507 i~~~~~~~----~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~ 578 (758)
T 3pxi_A 507 VRRARAGL----KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRK 578 (758)
T ss_dssp HHHHTTTC----SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHC
T ss_pred HHHHHccc----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhC
Confidence 86421100 0001222259999999999999999999997 6899999999988776554 22233445556
Q ss_pred CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCC------------C
Q 002169 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDK------------I 797 (957)
Q Consensus 739 ~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~------------i 797 (957)
.++|||||||+.+ ...+++.|++.|+... ...+++||+|||.+.. +
T Consensus 579 ~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f 645 (758)
T 3pxi_A 579 PYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAF 645 (758)
T ss_dssp SSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHS
T ss_pred CCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhC
Confidence 6789999999855 5678888999998632 2347899999997654 6
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHH
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIRELACL--SEGCTGADISLICREAAIS 865 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~ 865 (957)
.|++++ ||+.+|.|++|+.+++.+|++.++..+ +.. .+..++.|+.. ...++.|+++++++++...
T Consensus 646 ~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 646 RPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVED 723 (758)
T ss_dssp CHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHH
T ss_pred CHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Confidence 888888 999999999999999999998877543 221 12234555543 2345688999999988776
Q ss_pred HHHHh
Q 002169 866 AIEEN 870 (957)
Q Consensus 866 a~~~~ 870 (957)
++.+.
T Consensus 724 ~l~~~ 728 (758)
T 3pxi_A 724 RLSEE 728 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=325.55 Aligned_cols=250 Identities=46% Similarity=0.786 Sum_probs=232.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|++|+|++.+++.+.+.+.+++.+++.|..++..++.++||+||||||||++|++||++++.+|+.++++++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
|.|+....++.+|..|....|+||||||||.+...+... ......+++++|+..|++.....+++||+|||+++.+|+
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 999999999999999999999999999999998766433 235678999999999999888889999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-------
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------- 872 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~------- 872 (957)
+++|+|||++.+++++|+.++|.+||+.+++.+++..+.++..++..+.||+++|+..+|++|++.|+++..+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999988899999999999999999999999999999987532
Q ss_pred --------CCCCCHHHHHHHHHhhCCC
Q 002169 873 --------ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 873 --------~~~It~~d~~~al~~~~p~ 891 (957)
...|+++||+.|++.++|+
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCch
Confidence 1258999999999988876
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=304.47 Aligned_cols=230 Identities=32% Similarity=0.539 Sum_probs=206.6
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
.+..+|++|+|++.+++.|++++.+++.+..+...+..++.++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence 34567899999999999999999999877444344667889999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchhhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~al 448 (957)
.|+.+..++.+|+.+....|+||||||+|.+.+.+.........++..+|+..|+++. ...+++||++||+++.+++++
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al 171 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999988766656667889999999999884 567899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKI 521 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~ 521 (957)
+| ||+..++++.|+.++|.+|++.++......+++.+++.++..++||+|+||..+|++|.+.++++....
T Consensus 172 ~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 172 RR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred Hc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99 999999999999999999999999998888899999999999999999999999999999999987654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=334.39 Aligned_cols=508 Identities=20% Similarity=0.259 Sum_probs=299.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++++.|.+++++.+.+++.. ....+++|+||||||||++|+++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 34678999999988888877421 345679999999999999999999987 78899999
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
+..+. ..+.|+.+..++.+|+.+... .|+||||||+|.+.+.+...+ ...+.+.|...+ ..+++.+|++|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l----~~~~i~~I~at 306 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPAL----ARGELRLIGAT 306 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEEEEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHH----hCCCeEEEEec
Confidence 98887 457889999999999998865 689999999999986543321 122333344444 34678899999
Q ss_pred CCCC----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHc-----CCCcHHHHHH
Q 002169 439 NRPD----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMAT-----HGFVGADLAA 505 (957)
Q Consensus 439 N~~~----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t-----~g~~gaDi~~ 505 (957)
|.++ .++++++| ||+. +.++.|+.+++.+|++.++.. ....+++..+..++..+ .+|.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 8765 47899999 9986 999999999999999877653 35566788888887765 4566777778
Q ss_pred HHHHHHHHHHHHhcccccc-ccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchh
Q 002169 506 LCNEAALVCLRRYSKIQTS-SDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLR 584 (957)
Q Consensus 506 l~~~A~~~a~rr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (957)
++.+|+..+..+....... ..+ .+.+.+..... ..... ............+.
T Consensus 384 lldea~a~~~~~~~~~p~~l~~~-----------------------~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ 436 (854)
T 1qvr_A 384 LIDEAAARLRMALESAPEEIDAL-----------------------ERKKLQLEIER-EALKK---EKDPDSQERLKAIE 436 (854)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHH-----------------------HHHHHHHHHHH-HHHSS---CSSHHHHSCTHHHH
T ss_pred HHHHHHHHHHhhccCCchhHHHH-----------------------HHHHHHHHHHH-HHHHh---ccccccHHHHHHHH
Confidence 8888766553321100000 000 00000000000 00000 00000000000000
Q ss_pred hcH-------HHHHhhcccCC----------------------CCCCCCCccc------------------------c-c
Q 002169 585 GTV-------SEIADNFHNGV----------------------SDSSGGMFMS------------------------E-K 610 (957)
Q Consensus 585 ~~~-------~~~~~~~~~~~----------------------~~~~~~~~~~------------------------e-~ 610 (957)
... ..+... |... .....+.... + .
T Consensus 437 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (854)
T 1qvr_A 437 AEIAKLTEEIAKLRAE-WEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGAR 515 (854)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCS
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccc
Confidence 000 000000 0000 0000000000 0 0
Q ss_pred cccccccHHHHHHHHHhcCchh-------hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcc
Q 002169 611 GCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGI 683 (957)
Q Consensus 611 ~~~~~v~~~df~~a~~~~~ps~-------~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~gi 683 (957)
--...++.+++........... ..+.....+..-+++++|++++++.+...+...... +. -..+|..++
T Consensus 516 ~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g---~~-~~~~p~~~v 591 (854)
T 1qvr_A 516 FVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG---LK-DPNRPIGSF 591 (854)
T ss_dssp SCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGG---CS-CSSSCSEEE
T ss_pred cccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcc---cC-CCCCCceEE
Confidence 0011244455544443332110 001111222334578999999999998887542110 00 001223469
Q ss_pred eeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc------------cccchHHHHHHHHHHHHhCCCeEEEEeCC
Q 002169 684 LMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGESEKAVRSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 684 LL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~------------~vg~~~~~ir~~f~~A~~~~p~ILfiDEi 748 (957)
||+||||||||++|++||..+ +.+|+.++++++... |+|... ...+....+...++|||||||
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi 669 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEI 669 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSG
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecc
Confidence 999999999999999999998 789999999887543 223222 123444455566789999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCC-------------------------
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRP------------------------- 794 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~------------------------- 794 (957)
+.+ ...+++.|++.|+... ...+++||+|||..
T Consensus 670 ~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~ 736 (854)
T 1qvr_A 670 EKA-------------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVL 736 (854)
T ss_dssp GGS-------------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccc-------------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHH
Confidence 854 4678889999998542 12368899999972
Q ss_pred -CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHHHHHcc--CCcHHHHHHHHHH
Q 002169 795 -DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIRELACLSE--GCTGADISLICRE 861 (957)
Q Consensus 795 -~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~l~~la~~t~--g~sg~dl~~l~~e 861 (957)
..+.|+|+. ||+.++.|.+|+.+++..|++.++.+. +.. .+..+..|+.... .++.|+++++++.
T Consensus 737 ~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~ 814 (854)
T 1qvr_A 737 QQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 814 (854)
T ss_dssp HTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred HhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHH
Confidence 245778887 999999999999999999998877532 111 2233566666655 5688999999999
Q ss_pred HHHHHHHHh
Q 002169 862 AAISAIEEN 870 (957)
Q Consensus 862 A~~~a~~~~ 870 (957)
+...++.+.
T Consensus 815 ~~~~~~~~~ 823 (854)
T 1qvr_A 815 ELETPLAQK 823 (854)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=299.84 Aligned_cols=267 Identities=39% Similarity=0.641 Sum_probs=226.5
Q ss_pred hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 634 ~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
++...+.++++|++++|++++++.+.+.+.++..+++.+..++ .++.++||+||||||||++|+++|++++.+|+.+++
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 3444567899999999999999999999999999988887664 567899999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC---CcEEEEEe
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR---VNVTVIAA 790 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~---~~v~VI~a 790 (957)
+++.+.+.|..+..++.+|..+....|+||||||+|.+...+... ......++.++++..+++.... .+++||++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--cchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 999999999999999999999999999999999999998766432 2345678889999999987543 57999999
Q ss_pred cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 791 TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
||+++.++++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+++|+..+|++|+..++++
T Consensus 166 tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 166 TNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp ESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred cCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999876643 4556889999999999999999999999999886
Q ss_pred hc----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHHH
Q 002169 870 NL----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 905 (957)
Q Consensus 870 ~~----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~~ 905 (957)
.. ....|+.+||..|+..++|+ ....|++|.+.|..
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 244 LNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp CC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 42 23579999999999999987 45677776666543
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=302.16 Aligned_cols=228 Identities=32% Similarity=0.547 Sum_probs=199.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++|+|++.+++.|++.+.+++.+..+...+..++.+|||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~ 125 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 125 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc
Confidence 45678999999999999999999987774433346678899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc-CCCeEEEEecCCCCCchhhhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~-~~~v~vI~ttN~~~~ld~al~ 449 (957)
|+.+..++.+|+.+....|+||||||+|.+.+.+.........++..+|+..|+++.. ..+++||++||+++.++++++
T Consensus 126 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 126 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp --CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence 9999999999999998999999999999999887666667788999999999998743 567999999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
| ||+..++++.|+.++|.+|++.++...+..+++.+++.|+..++||+|+||..+|++|++.|+++...
T Consensus 206 r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 206 R--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp H--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999887788999999999999999999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=305.72 Aligned_cols=264 Identities=38% Similarity=0.691 Sum_probs=228.2
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
++....+.++|++|+|++.+++.+.+.+.+++.+++.+...+ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 344456889999999999999999999999999988877654 6788999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEEecC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATN 792 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~aTN 792 (957)
++...|.|+.++.++.+|..+....|+||||||+|.+...+... ......+++++++..+++.. ...+++||++||
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999999999999999999999999999998765332 23467789999999999864 245899999999
Q ss_pred CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 793 ~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+++.++++++| ||+..+++++|+.++|.+|++.+++..+.. .+.++..+++.+.||+++||..+|++|+..++++..
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999999876543 456789999999999999999999999999988632
Q ss_pred ----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHH
Q 002169 872 ----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 903 (957)
Q Consensus 872 ----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~ 903 (957)
+...|+.+||..|+..++|+ +.+.|++|.+.|
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~ 353 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 23579999999999999986 667888877765
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-32 Score=291.47 Aligned_cols=248 Identities=40% Similarity=0.673 Sum_probs=199.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
|+++|++++|++++++.+.+.+.+ +.+++.+..++..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999999887 6778888888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC--CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG--VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~--~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.+.....++.+|..+....|+||||||+|.+...+.....+ .......+.+++..+++.....+++||++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999997665332111 1223466788889998876677899999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN--IRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~--l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
++++|+|||+..+++++|+.++|.+|++.++.+.+...+.+ ...++..+.||+++|+..+|++|+..|..+. ...|
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~--~~~i 237 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG--HTSV 237 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------C
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 99999999999999999999999999999999887765544 4789999999999999999999999998764 5679
Q ss_pred CHHHHHHHHHhhCCC
Q 002169 877 TMQHLKTAIRHVQPS 891 (957)
Q Consensus 877 t~~d~~~al~~~~p~ 891 (957)
+.+||..|++++.+.
T Consensus 238 ~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 238 HTLNFEYAVERVLAG 252 (262)
T ss_dssp CBCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccC
Confidence 999999999877544
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=317.67 Aligned_cols=248 Identities=43% Similarity=0.721 Sum_probs=223.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
+.++|+||+|++++++.+.+.+.+ +.++..+.+++...++|++|+||||||||++|++||++++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 789999999999999999998876 5777888999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
+|.....++.+|+.++...|+|+||||||.+...++.. ........+.+++++.+|++......+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999997665432 11223446788999999999877778999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~ 879 (957)
+++|||||++.|++++|+.++|.+|++.++++.++..++++..+|+.+.||+|+||+++|++|+..|.++. ...|+.+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--~~~It~~ 262 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKITMK 262 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC--CSSCCSH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccCHH
Confidence 99999999999999999999999999999998888889999999999999999999999999999887653 4679999
Q ss_pred HHHHHHHhhCCC
Q 002169 880 HLKTAIRHVQPS 891 (957)
Q Consensus 880 d~~~al~~~~p~ 891 (957)
||.+++.++.+.
T Consensus 263 dl~~al~~v~~~ 274 (499)
T 2dhr_A 263 DLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=286.30 Aligned_cols=248 Identities=44% Similarity=0.735 Sum_probs=215.5
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
.+..+.|.++|++++|+++++.++.+...+ +.++..+.+++...++|++|+||||||||++++++|+.++.+++.+++.
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 345567899999999999999999998775 5677889999999999999999999999999999999999999999998
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++...+.+...+.++.+|+.+....|+++|+||+|.+...+... ........+.+++++.+|++......++++++||+
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCC
Confidence 88777888888889999999988889999999999987655321 11123346778899999998877777899999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
|+.+|++++|+|||++.++++.|+.++|.+|++.+.++.++..+.++..+++.+.||+++||+++|++|+..|..+. .
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~--~ 241 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--R 241 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--C
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--C
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999998764 5
Q ss_pred CCCCHHHHHHHH
Q 002169 874 SRITMQHLKTAI 885 (957)
Q Consensus 874 ~~It~~d~~~al 885 (957)
..|+.+|+++++
T Consensus 242 ~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 RKITMKDLEEAA 253 (254)
T ss_dssp SSBCHHHHHHHT
T ss_pred CCcCHHHHHHHh
Confidence 679999999875
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=296.78 Aligned_cols=228 Identities=39% Similarity=0.666 Sum_probs=206.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|+|++++++.|++++.+++.+ +.+.++++.+++++||+||||||||++|+++|++++.+++.++|+++.+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4567899999999999999999998776 778889999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|+.+....|+||||||+|.+.+.++... .....+++.+|+..|+++....+++||++||+++.+++
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCG
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccCh
Confidence 999999999999999999999999999999987654321 22345778899999998877788999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
+++|+|||++.++++.|+.++|.+|++.+++..... .+.+++.++..++||+|+||.++|++|++.|.++..
T Consensus 170 al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887654 566788999999999999999999999999998764
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=300.47 Aligned_cols=270 Identities=35% Similarity=0.596 Sum_probs=222.4
Q ss_pred chhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 630 PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 630 ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
....++.+...+.++|++|+|++.+++.+.+.+.++..+++.+..++ .++.++||+||||||||++|++||.+++.+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 99 NLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp TTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 33445556667899999999999999999999999999888887765 45789999999999999999999999999999
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc--CCcEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ--RVNVTV 787 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~V 787 (957)
.+++.++.+.|+|+.+..++.+|..++...|+||||||||.+...+... ......+++++++..|++... ..+++|
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 9999999999999999999999999999999999999999997765432 235678999999999998754 457999
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||+++.+|++++| ||+..++++.|+.++|.+|++.++.+.+.. .+.++..++..+.||++++|..+|++|+..+
T Consensus 256 I~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 256 MGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGP 333 (389)
T ss_dssp EEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999876543 3457889999999999999999999999999
Q ss_pred HHHhc----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 867 IEENL----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 867 ~~~~~----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
+++.. +...|+.+||..++..+.++ .++.|++|.+.|.
T Consensus 334 ~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g 385 (389)
T 3vfd_A 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385 (389)
T ss_dssp HHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC
T ss_pred HHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 98732 23579999999999999987 4556666666554
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=303.58 Aligned_cols=229 Identities=31% Similarity=0.544 Sum_probs=199.4
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~~~i~i~~~~l~~~ 368 (957)
.+..+|++|+|++.+++.|++++.+++.+..+..-+..+++++||+||||||||++|+++|.++ +.+|+.++++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 3456789999999999999999998877643322345678999999999999999999999999 899999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchhh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~a 447 (957)
+.|+.+..++.+|+.+....|+||||||+|.+++.+.........+++.+|+..|+++. ...+++||++||+++.++++
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHH
Confidence 99999999999999999999999999999999988877666778899999999999875 35789999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
++| ||+..+.++.|+.++|.+|++.++...+..+++.+++.|+..+.||+|+||..+|++|++.++++...
T Consensus 288 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 288 IRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999998887788999999999999999999999999999999998754
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=299.10 Aligned_cols=225 Identities=38% Similarity=0.618 Sum_probs=200.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++|+|+++.++.+++++........+..++...++++||+||||||||++|+++|++++.+|+.++++++...+.|
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 45788999999999999999987655577888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....++.+|+.|....|+||||||+|.+.++++.. ......+++.+|+..|+++....+++||++||+++.+|+++
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~al 171 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPAL 171 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGG
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhh
Confidence 999999999999999999999999999998877532 23445678899999999887777899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+|+|||++.|.++.|+.++|.+|++.++++.++. .+.+++.++..+.||+|+||.++|++|+..+.++
T Consensus 172 lR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 172 LRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887654 5566888999999999999999999998888654
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-32 Score=296.16 Aligned_cols=250 Identities=40% Similarity=0.706 Sum_probs=216.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.+.+.|++++|++++++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|++++.+++.+++.++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999998876 78899999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC--CCCcchHHHHHHHHHHHhcccc-CCcEEEEEecCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES--DGVSVSDRVMSQLLVELDGLHQ-RVNVTVIAATNRPD 795 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~--~~~~~~~~v~~~LL~~ld~~~~-~~~v~VI~aTN~~~ 795 (957)
.+.|.....++.+|+.+....|+||||||+|.+...+...+ .......+++++++..+++... ..+++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99888888888999999999999999999999976542211 1112223455678888876643 34589999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++|+|||+..+++++|+.++|.++++.++++.++..+.++..++..+.||+|+||+++|++|+..|..+. ...
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~--~~~ 240 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--QKE 240 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC--CCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCC
Confidence 999999999999999999999999999999999998888888889999999999999999999999998886543 567
Q ss_pred CCHHHHHHHHHhhCCC
Q 002169 876 ITMQHLKTAIRHVQPS 891 (957)
Q Consensus 876 It~~d~~~al~~~~p~ 891 (957)
|+.+|+.+++..+.|+
T Consensus 241 i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 241 VRQQHLKEAVERGIAG 256 (268)
T ss_dssp CCHHHHHTSCTTCCCC
T ss_pred cCHHHHHHHHHHHhhc
Confidence 9999999999998887
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=277.00 Aligned_cols=244 Identities=44% Similarity=0.740 Sum_probs=213.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.++|++++|++++++++.+...+ +..+..+.++++..++|++|+||||||||+++++||+.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44889999999999999999988765 56778899999999999999999999999999999999999999999988877
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.+...+.++.+|+.+....|+++|+||+|.+...+... ........+.+++++.+|++......++++++||+|+.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 7788888889999999998889999999999887554321 111223467788899999987766678999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|++||++.++++.|+.++|.+|++.++++.++..+.++..+++.+.||+++||+++|++|+..|..+. ...|+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~I~ 269 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKIT 269 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CCSBC
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCcC
Confidence 9999999999999999999999999999999998888888899999999999999999999999999888764 56799
Q ss_pred HHHHHHHH
Q 002169 878 MQHLKTAI 885 (957)
Q Consensus 878 ~~d~~~al 885 (957)
.+|+++|+
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=271.89 Aligned_cols=227 Identities=38% Similarity=0.638 Sum_probs=203.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+...|++|+|++++++.|++.+..++.. +.+..+++.++.++||+||||||||++|+++|+.++.+++.+++.++...+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 3467889999999999999999888766 778889999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|..+....|+||||||+|.+.+++.... .....+.+..+++.++++....+++||+|||.++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~ 171 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCH
Confidence 999999999999999999999999999999988775543 33445666777777777767778999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+++|++||+..+.++.|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|...|+++.
T Consensus 172 ~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999887655 55678999999999999999999999999887653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=267.95 Aligned_cols=228 Identities=36% Similarity=0.609 Sum_probs=197.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
...|++|+|++.+++.+++++.+......+..++...+++++|+||||||||++|+++|+.++.+++.+++.++...+.|
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 87 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence 45788999999999999999877544467777888899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
+.+..++.+|+.+....|+++||||+|.+.+.+... +.....+.+.+++..++++....+++||++||+++.+++++
T Consensus 88 ~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l 167 (257)
T 1lv7_A 88 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 167 (257)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGG
T ss_pred hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHH
Confidence 999999999999998889999999999998876532 22344577888999999887778899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.|++||++.+.++.|+.++|.+|++.+++...+. ++.++..++..+.||+++||..+|++|+..|.++...
T Consensus 168 ~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~ 238 (257)
T 1lv7_A 168 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 238 (257)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999887654 4556788999999999999999999999999876543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=278.99 Aligned_cols=226 Identities=35% Similarity=0.597 Sum_probs=198.5
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
.....|++|+|++.+++.|++++..++.+ +.+... ..+++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 34568899999999999999999988766 443333 3678999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--cCCCeEEEEecCCCCCchh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~~~~v~vI~ttN~~~~ld~ 446 (957)
+.|+.+..++.+|..+....|+||||||+|.+.+.+..+......+++.+|+..+++.. ...+++||++||+++.+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 99999999999999999889999999999999988766556677888999999999864 3467999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+++| ||+..+.++.|+.++|.+|++.++......+++.+++.++..+.||+++||..+|++|.+.++++.
T Consensus 237 ~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred HHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999888888889999999999999999999999999999988764
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=272.10 Aligned_cols=225 Identities=31% Similarity=0.549 Sum_probs=196.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
...+|++++|.+.+++.|++.+..+..+ +.+..++ .++.++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 4567899999999999999999888665 4443333 5688999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC---CCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT---DGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~---~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|..+....|+||||||+|.+...+.........++...|+..+++.... .+++||++||+++.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 999999999999999999999999999999998776544445567788899999887432 57999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+++| ||+..+.++.|+.++|.+|++.++......+++..++.++..+.||+++||..+|++|.+.++++.
T Consensus 175 ~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 175 AALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred HHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999888777789999999999999999999999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=264.20 Aligned_cols=228 Identities=34% Similarity=0.523 Sum_probs=181.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|++++|++.+++.|++++......+.+..+++.++.++||+||||||||++|+++|++++.+++.+++.++...+.++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 46889999999999999998875445777788999999999999999999999999999999999999999999988899
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC----chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG----EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~----~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.+..++.+|+.+....|+||||||+|.+..++.... .......+..++..+++.....++++|++||.++.+++++
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHH
Confidence 999999999999988899999999999987664321 2233456777888888876677899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDS-EVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~-~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+|+|||++.++++.|+.++|.+|++.++.......... ....++..+.||+++||..+|++|+..|.++...
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~ 235 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT 235 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-------
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999998877665443 3588999999999999999999999888766443
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=292.96 Aligned_cols=360 Identities=20% Similarity=0.246 Sum_probs=241.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEecccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQN 369 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~~ 369 (957)
...|++++|++++++.+.+++... ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.+++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 345789999999999999887543 23556789999999999999999999999999 899999999999999
Q ss_pred cchhHHHHHHHHHHH---hccCCeEEEEcCccccccCCcCCCchHH----H---------------HHHHHHHHHhhc--
Q 002169 370 YGESEQALHEVFDSA---SQSAPAVVFIDELDAIAPARKDGGEELS----Q---------------RMVATLLNLMDG-- 425 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a---~~~~p~IL~IDEiD~l~~~~~~~~~~~~----~---------------~i~~~Ll~~ld~-- 425 (957)
.|+.+. ++.+|+.| ....|+||||||+|.+++++........ . ++...++..++.
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 999997 99999999 7778999999999999998755421111 1 112234455542
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcce--eeeecCCC--HHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDR--EIEIAVPS--PAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~--~I~i~~P~--~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
+.....++|+++||+++.+|++++|+||||+ .+.++.|+ .++|.+|++.+. ..+++.++..++| |+
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVANARPQG--GQ 254 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC---------
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHHHhCCC--hh
Confidence 2233335666899999999999999999999 56677774 366777766432 3468888889999 99
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCc
Q 002169 502 DLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSL 581 (957)
Q Consensus 502 Di~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (957)
|+.++|....... . . .
T Consensus 255 dl~~l~~~i~~p~--~--~-----~------------------------------------------------------- 270 (456)
T 2c9o_A 255 DILSMMGQLMKPK--K--T-----E------------------------------------------------------- 270 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhcccc--h--h-----h-------------------------------------------------------
Confidence 9888875310000 0 0 0
Q ss_pred chhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHH
Q 002169 582 PLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEA 661 (957)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~ 661 (957)
+ .. ..+ +.+.+.+.+.
T Consensus 271 ----------------------------------I------------~~-~lr-----------------~~I~~~l~~~ 286 (456)
T 2c9o_A 271 ----------------------------------I------------TD-KLR-----------------GEINKVVNKY 286 (456)
T ss_dssp ----------------------------------------------------------------------CHHHHHHHHH
T ss_pred ----------------------------------H------------HH-HHH-----------------HHHHHHHHHH
Confidence 0 00 000 0000000000
Q ss_pred HhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHH-hCCC
Q 002169 662 VEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKAR-ANAP 740 (957)
Q Consensus 662 i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~-~~~p 740 (957)
++.+. ...|
T Consensus 287 ----------------------------------------------------------------------~~~g~~~v~~ 296 (456)
T 2c9o_A 287 ----------------------------------------------------------------------IDQGIAELVP 296 (456)
T ss_dssp ----------------------------------------------------------------------HHTTSEEEEE
T ss_pred ----------------------------------------------------------------------HHhccccccc
Confidence 00000 0012
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-------------CCCCChhhhCCCCc
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-------------PDKIDPALLRPGRF 807 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-------------~~~id~aLlr~gRf 807 (957)
.|+||||+|.+ ....++.|+..|+... .++ +|++||. ++.+++.+++ ||
T Consensus 297 ~VliIDEa~~l-------------~~~a~~aLlk~lEe~~--~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~ 358 (456)
T 2c9o_A 297 GVLFVDEVHML-------------DIECFTYLHRALESSI--API-VIFASNRGNCVIRGTEDITSPHGIPLDLLD--RV 358 (456)
T ss_dssp CEEEEESGGGC-------------BHHHHHHHHHHTTSTT--CCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--TE
T ss_pred eEEEEechhhc-------------CHHHHHHHHHHhhccC--CCE-EEEecCCccccccccccccccccCChhHHh--hc
Confidence 49999999977 3567888999988543 344 5555533 6789999999 99
Q ss_pred ceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc-cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 808 DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS-EGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 808 d~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t-~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.. +.|++|+.++..++++..+...+.. .+..+..++..+ .| +.+....+++.|...|..+. ...|+.+|+.+++
T Consensus 359 ~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~--~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 359 MI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING--KDSIEKEHVEEIS 434 (456)
T ss_dssp EE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT--CSSBCHHHHHHHH
T ss_pred ce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC--CCccCHHHHHHHH
Confidence 65 6999999999999999887644433 233467778887 66 89999999999988887665 6689999999998
Q ss_pred HhhC
Q 002169 886 RHVQ 889 (957)
Q Consensus 886 ~~~~ 889 (957)
..+.
T Consensus 435 ~~~~ 438 (456)
T 2c9o_A 435 ELFY 438 (456)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 8765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=284.11 Aligned_cols=226 Identities=39% Similarity=0.611 Sum_probs=201.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++++|+++++..+++++........+.++++..+++++|+||||||||+||+++|++++.+++.++++++...+.|
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g 106 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 106 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence 45788999999999999999887545577888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....++.+|+.+....|+|+||||+|.+...+... ......+.+++|+..|++......+++|++||+|+.+|+++
T Consensus 107 ~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aL 186 (499)
T 2dhr_A 107 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 186 (499)
T ss_dssp HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTT
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCccc
Confidence 999999999999988889999999999998776531 23445677889999999987777899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+|+|||++.|.++.|+.++|.+|++.+++...+. .+.++..++..+.||+|+||.++|++|+..|.++.
T Consensus 187 lr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~ 255 (499)
T 2dhr_A 187 LRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255 (499)
T ss_dssp SSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred ccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988776544 56678999999999999999999999998887653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=256.41 Aligned_cols=227 Identities=39% Similarity=0.606 Sum_probs=196.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++++|+++.+..+++++........+..+++..+++++|+||||||||||++++|+.++..++.+++.++...+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 90 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHh
Confidence 45678999999999999999887654446778889999999999999999999999999999999999999999888888
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
++....++.+|+.+....|+++++||+|.+...+... ......+.+.+++..|++......++++++||+|+.+|++
T Consensus 91 ~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~ 170 (254)
T 1ixz_A 91 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 170 (254)
T ss_dssp THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGG
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHH
Confidence 8888899999999987789999999999998765431 2334567788889999987766778999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
++|++||++.++++.|+.++|.+|++.+++..... .+.++..++..++||+|+||..+|++|+..|.++.
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~ 240 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988776544 55668899999999999999999999999887654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=270.07 Aligned_cols=226 Identities=32% Similarity=0.579 Sum_probs=190.2
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
....|++|+|.+.+++.|.+++..+..+ +.+..++ .++.++||+||||||||++|+++|.+++.+|+.++|.++.+.+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc
Confidence 4567899999999999999999888775 4444444 5678999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc--CCCeEEEEecCCCCCchhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--TDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~--~~~v~vI~ttN~~~~ld~a 447 (957)
.|+.+..++.+|+.+....|+||||||+|.++..+.........++...|+..|++... ..+++||++||+++.++++
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 268 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEA 268 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHH
Confidence 99999999999999999999999999999998877665556678889999999998754 4679999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
++| ||+..++++.|+.++|.+|++.++......+.+..++.++..+.||++++|..+|+.|...++++..
T Consensus 269 l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 269 VLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred HHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999 9998999999999999999999999888888999999999999999999999999999998887643
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=249.92 Aligned_cols=227 Identities=39% Similarity=0.606 Sum_probs=195.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++++|+++.++.+++++........+..+++..+++++|+||||||||||++++++.++..++.+++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 45678999999999999999987654457778888888999999999999999999999999999999999999888888
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
++....++.+|+.+....|+++++||+|.+...+... ......+.+.+++..|++......++++++||+|+.+|++
T Consensus 115 ~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194 (278)
T ss_dssp THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence 8888899999999987889999999999987655321 1234456778888888887666678999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
++|++||++.++++.|+.++|.+|++.+++..... .+.++..++..++||+++||..+|++|+..+.++.
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988776544 45568899999999999999999999998887653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-28 Score=261.62 Aligned_cols=225 Identities=36% Similarity=0.596 Sum_probs=187.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
...|++|+|.+.+++.|++++......+.+..++...+.++||+||||||||++|+++|++++.+++.+++.++...+.|
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 86 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG 86 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc
Confidence 45688999999999999999887544577888899999999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC----chHHHHHHHHHHHHhhcccc-CCCeEEEEecCCCCCchh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG----EELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~----~~~~~~i~~~Ll~~ld~l~~-~~~v~vI~ttN~~~~ld~ 446 (957)
.....++.+|+.+....|+||||||+|.+...+..++ .....+++..|+..+++... ..+++||++||.++.+++
T Consensus 87 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~ 166 (268)
T 2r62_A 87 LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDP 166 (268)
T ss_dssp SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCG
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCH
Confidence 8877788899999888899999999999987653221 11112345567777776543 345899999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
++.|+|||+..+.++.|+.++|.+|++.+++..... .+.+++.++..+.||+|+||..+|++|+..|.++
T Consensus 167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~ 236 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRN 236 (268)
T ss_dssp GGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS
T ss_pred hHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876544 4556778899999999999999999998877543
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-25 Score=245.79 Aligned_cols=176 Identities=21% Similarity=0.329 Sum_probs=140.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHH----HhCCCeEEEEeCCchh
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA----RANAPSIIFFDEIDGL 751 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A----~~~~p~ILfiDEid~l 751 (957)
+.++|.++|||||||||||++|++||++++.+|+.++++++.+.|+|+.+..++.+|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHH
Q 002169 752 AAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820 (957)
Q Consensus 752 ~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~e 820 (957)
...+...........++++.|++.||+.. ...+++||+|||+++.+|++++|+|||++.|++ |+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHHH
Confidence 87554333333345678899999998443 455799999999999999999999999988874 69999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHH
Q 002169 821 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISL 857 (957)
Q Consensus 821 r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~ 857 (957)
|.+|++.++... +++...++..+.||+++++..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999888753 457889999999999988753
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=240.86 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=81.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhh-hhhhhcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccch-
Q 002169 297 KLGGLSKEYAILKDIIISSSVK-STLSSLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE- 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge- 372 (957)
.|+|+++.|+.|...+..+..+ ..+..+.. .++.++||+||||||||++|+++|..++.+++.++++.+.. .|+|+
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999998776554 32223332 25789999999999999999999999999999999999888 58885
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEe-cCCCCCchhhhhCC
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TNRPDSIEPALRRP 451 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~t-tN~~~~ld~al~r~ 451 (957)
.+..++.+|+.+... +++||++.+... ......++++.+|+..||++....++ +++ ||+++.+|++|+|+
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rg 166 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREG 166 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcC
Confidence 899999999988765 358998876432 33456789999999999998665554 455 99999999999999
Q ss_pred CCcceeeeecCCCHH-HHHHHHHH
Q 002169 452 GRLDREIEIAVPSPA-QRLEILHA 474 (957)
Q Consensus 452 gRfd~~I~i~~P~~~-~r~~Il~~ 474 (957)
||||+.|++++|+.. .|.+|+..
T Consensus 167 gr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 167 QLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ------------------------
T ss_pred CCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999987 77777653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=239.75 Aligned_cols=178 Identities=21% Similarity=0.282 Sum_probs=140.0
Q ss_pred hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcC
Q 002169 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDE 396 (957)
Q Consensus 321 ~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDE 396 (957)
+...+..++.++|||||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|+.| ....|+||||||
T Consensus 28 l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 28 LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp SCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3345778899999999999999999999999999999999999999999999999999999988 567899999999
Q ss_pred ccccccCCcCCC--chHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCC
Q 002169 397 LDAIAPARKDGG--EELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 397 iD~l~~~~~~~~--~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P 463 (957)
+|.+++.+.... ....+++...|+++||+.. ...+++||+|||+++.+|++++|+|||++.|+ .|
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P 185 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 185 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CC
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--Cc
Confidence 999988554321 2245677899999998542 45679999999999999999999999998776 57
Q ss_pred CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHH
Q 002169 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505 (957)
Q Consensus 464 ~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~ 505 (957)
+.++|.+|++.++...... .+.++..+.||++++|..
T Consensus 186 ~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 186 TREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred CHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 9999999999888754433 677888888999988764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-23 Score=269.36 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=115.8
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhc----------HHHHHh------cCCC----------CCCc--ceeeCCCCCh
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKH----------QEAFKR------IGTR----------PPTG--ILMFGPPGCS 692 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~----------~~~~~~------l~~~----------~~~g--iLL~GPpGtG 692 (957)
+.++|++|+|++++|+.+.+.+.||+.+ ++.++. .|.. +|+| +++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4489999999999999999999999855 455655 2333 4555 9999999999
Q ss_pred hhHHHHHHHHHh---CCcEEEEeCCCcc------------cccccc----hHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 693 KTLMARAVASEA---GLNFLAVKGPELF------------SKWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 693 KTtlAkaiA~~~---~~~~i~v~~~~l~------------~~~vg~----~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
||++|++++.+. +-+.+.|+..+.+ ++|+++ +++.++.+|.+|+..+||+||+||++++.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999876 4455555555543 678888 899999999999999999999999999998
Q ss_pred hcC---CCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 754 IRG---KESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 754 ~r~---~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.+. ..++ ...+..|+++++|.+|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 842 2222 2367889999999999998888888887 77754
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-24 Score=246.64 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=145.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELF 717 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~ 717 (957)
.|...|++++|++++++.+.+.+.+. ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35678999999999999998877542 12566788999999999999999999999999 999999999999
Q ss_pred cccccchHHHHHHHHHHH---HhCCCeEEEEeCCchhhhhcCCCCCCCc-----------------chHHHHHHHHHHHh
Q 002169 718 SKWVGESEKAVRSLFAKA---RANAPSIIFFDEIDGLAAIRGKESDGVS-----------------VSDRVMSQLLVELD 777 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A---~~~~p~ILfiDEid~l~~~r~~~~~~~~-----------------~~~~v~~~LL~~ld 777 (957)
++|+|+++. ++.+|..| +...|+||||||+|+++..|.....+.. ...++.++++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 99999999 7888999999999999987754321110 01122334566665
Q ss_pred --ccccCCcEEEEEecCCCCCCChhhhCCCCcce--ecccCCCCH--HHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 778 --GLHQRVNVTVIAATNRPDKIDPALLRPGRFDR--LLYVGPPNE--TDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 778 --~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~--~i~~~~P~~--~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
+......++|+++||+++.+|+++.||||||+ .++++.|+. ++|.+|++.+.. .+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 22333345566899999999999999999999 667788854 678877765543 268889999999
Q ss_pred HHHHHHHHHH
Q 002169 852 GADISLICRE 861 (957)
Q Consensus 852 g~dl~~l~~e 861 (957)
|+|+.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999964
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=206.14 Aligned_cols=215 Identities=25% Similarity=0.287 Sum_probs=177.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEeccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNGPEVV 366 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLaralA~~l-------~~~~i~i~~~~l~ 366 (957)
+|+|++++++.|++++........+..+|+. ++.++||+||||||||++|+++|+.+ ..+++.+++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 6999999999999999877655555556654 44579999999999999999999887 3389999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC----
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---- 442 (957)
+.+.|.....+..+|+.+ .++||||||+|.+...+.. ......++..|+..|+.. ..++++|+++|..+
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHH
Confidence 999999999999999887 3569999999999865532 223466778899998863 45789999998653
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-------THGFVGADLAALCNEAALVC 514 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~-------t~g~~gaDi~~l~~~A~~~a 514 (957)
.++|++++ ||+..+.|+.|+.+++.+|++.++......+++..++.++.. ...-+++++..+++.|...+
T Consensus 185 ~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 185 FQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp HHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 24689998 999999999999999999999999988888889888888887 33345899999999999888
Q ss_pred HHHhcc
Q 002169 515 LRRYSK 520 (957)
Q Consensus 515 ~rr~~~ 520 (957)
..|...
T Consensus 263 ~~r~~~ 268 (309)
T 3syl_A 263 ANRLFT 268 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=207.51 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=174.5
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCC---CcceeeCCCCChhhHHHHHHHHHh-------CCcEEEEeCC
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP---TGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGP 714 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~---~giLL~GPpGtGKTtlAkaiA~~~-------~~~~i~v~~~ 714 (957)
+.+++|++++++.+.+.+.++. .+..+.+.|+..+ .++||+||||||||++|+++|+.+ ..+++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999999998754 4666666665543 359999999999999999999987 3489999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
++.+.+.|.....++.+|..+. ++||||||+|.+...+.. ......+++.|+..|+.. ..++++|++||..
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN--RDDLVVILAGYAD 179 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC--CCCEEEEEeCChH
Confidence 9999999999999999998884 469999999999754422 245678889999999854 4578899999865
Q ss_pred C-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHc-------cCCcHHHHHHHHHH
Q 002169 795 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLS-------EGCTGADISLICRE 861 (957)
Q Consensus 795 ~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t-------~g~sg~dl~~l~~e 861 (957)
+ .++|+|++ ||+..++|++|+.+++.+|++.++.+.+..-+ ..+..++... ..-+++++.++++.
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 4 25789999 99999999999999999999999987665422 2344555542 22258999999999
Q ss_pred HHHHHHHHhcC--CCCCCHHHHH
Q 002169 862 AAISAIEENLD--ASRITMQHLK 882 (957)
Q Consensus 862 A~~~a~~~~~~--~~~It~~d~~ 882 (957)
|+..+..+... ...++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 99877666432 2445554443
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=229.80 Aligned_cols=285 Identities=19% Similarity=0.229 Sum_probs=207.6
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v 711 (957)
...|++++|.++.++.+.+.+. .....+++|+||||||||++|+++|..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 4478999999999988877663 2356789999999999999999999886 6678888
Q ss_pred eCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 712 KGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 712 ~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+...+. .++.|+.+..++.+|..+....++||||||+|.+.+.+.... .... ....+.......++.+|+
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~----~~~~----~~~~L~~~l~~~~~~~I~ 320 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----GQVD----AANLIKPLLSSGKIRVIG 320 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS----CHHH----HHHHHSSCSSSCCCEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc----chHH----HHHHHHHHHhCCCeEEEE
Confidence 887776 468899999999999999888899999999999976543221 1222 223344444566889999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----CCC-CcccHHHHHHHccC-----CcHHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCS-SDVNIRELACLSEG-----CTGAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~----~~~-~~~~l~~la~~t~g-----~sg~d 854 (957)
+||.++ .+|++|.| ||+ .+.++.|+.+++.+|++.+...+ .+. .+..+..++..+.| +.+.+
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998653 57899999 997 79999999999999999877652 221 23345666665554 34568
Q ss_pred HHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCC--------CchHHHHHHHHHHHHHhcCchhhhhcccccccch
Q 002169 855 ISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQP--------SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p--------~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 924 (957)
+..++++|+..+.... .....|+.+|+..++..... .+...+..+.+.+.+.+.++...... .....+
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~--l~~~i~ 475 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA--LTEAIK 475 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHH--HHHHHH
Confidence 8899998886655421 12457999999999987642 14556777888888888887665432 112222
Q ss_pred hhhhhhhhccCCceEEEeecccCCcccc
Q 002169 925 SIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 925 ~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
.....+-+..+++..+|+.||+|+|||+
T Consensus 476 ~~~~g~~~~~~p~~~~ll~G~~GtGKT~ 503 (758)
T 1r6b_X 476 MARAGLGHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_dssp HHHTTCSCTTSCSEEEEEECSTTSSHHH
T ss_pred HHhcccCCCCCCceEEEEECCCCCcHHH
Confidence 2223355667899999999999999985
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-20 Score=229.37 Aligned_cols=271 Identities=19% Similarity=0.249 Sum_probs=175.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
.....+++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3456789999999999998887642 345679999999999999999999997 77888
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
.+++ ..+|.|+++..++.+|..+....|+||||| . . ....+.|+..|+ ...+.+|+
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~--------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A--------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC--C-----------------------CCCTT----SSSCEEEE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c--------hhHHHHHHHHHh----cCCEEEEe
Confidence 8777 566889999999999999999999999999 1 0 112223333333 56899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHc-----cCCcHHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLS-----EGCTGAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----~~~~l~~la~~t-----~g~sg~d 854 (957)
+||..+ .+|+++.| || ..|.|+.|+.+++.+|++.+..++... .+..+..++..+ .++.+++
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999998 69999999 99 569999999999999999887764322 222344555444 3555678
Q ss_pred HHHHHHHHHHHHHHHhc-----------------------------------------------------------CCCC
Q 002169 855 ISLICREAAISAIEENL-----------------------------------------------------------DASR 875 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~~-----------------------------------------------------------~~~~ 875 (957)
...++.+|+..+..+.. ....
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 453 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453 (758)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---
T ss_pred HHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 88888887765543321 1223
Q ss_pred CCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccC
Q 002169 876 ITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAG 947 (957)
Q Consensus 876 It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~ 947 (957)
++.+++...+...... +.+.+..+...+.+.++++...... .....+.....+-...+++..+|+.||+|
T Consensus 454 v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~--l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~G 531 (758)
T 3pxi_A 454 VTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVA--VAKAVRRARAGLKDPKRPIGSFIFLGPTG 531 (758)
T ss_dssp CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHH--HHHHHHHHTTTCSCTTSCSEEEEEESCTT
T ss_pred cCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHH--HHHHHHHHHcccCCCCCCceEEEEECCCC
Confidence 4455555554443311 1112233445555556665544221 11111222223445667888999999999
Q ss_pred Ccccc
Q 002169 948 LSQSE 952 (957)
Q Consensus 948 ~g~~e 952 (957)
+|||+
T Consensus 532 tGKT~ 536 (758)
T 3pxi_A 532 VGKTE 536 (758)
T ss_dssp SSHHH
T ss_pred CCHHH
Confidence 99985
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=204.72 Aligned_cols=247 Identities=19% Similarity=0.222 Sum_probs=184.0
Q ss_pred hcCCccccccCChHHHH---HHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 639 EVPKVKWEDVGGQREVK---TQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk---~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
...+.+|++++|+++++ ..+...+... ...+++|+||||||||++|++||+.++.+|+.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34567899999999999 6676666421 2267999999999999999999999999999998754
Q ss_pred cccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 716 LFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
. ..+.++.++..+.. ..+.||||||||.+... .++.|+..|+. ..+++|++|
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEEEecC
Confidence 2 34556667766653 46789999999988432 23347777773 467788777
Q ss_pred --CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC-------C-CCcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 792 --NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-------C-SSDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 792 --N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~-------~-~~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
|....+++++++ ||. ++.+++|+.+++..+++.++.+.. . ..+..++.++..+.| +.+++.++++.
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 444579999999 885 778999999999999999987622 1 123346778888777 78899999988
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
++..+.....+...||.+++.+++...... ..+.+.+....|.+++.+++.++.+++..+.....
T Consensus 218 a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~G 285 (447)
T 3pvs_A 218 MADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAG 285 (447)
T ss_dssp HHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 876653221123579999999999876543 34566777888999999999999888777665443
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-19 Score=198.14 Aligned_cols=221 Identities=23% Similarity=0.292 Sum_probs=163.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFS 718 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~ 718 (957)
|...|++++|++++++.+....... . .+..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4556999999999998876555321 1 14445678999999999999999999999874 888888766443
Q ss_pred ccc-------------------------------------------------cchHHHHHHHHHHHHh-----C----CC
Q 002169 719 KWV-------------------------------------------------GESEKAVRSLFAKARA-----N----AP 740 (957)
Q Consensus 719 ~~v-------------------------------------------------g~~~~~ir~~f~~A~~-----~----~p 740 (957)
.+. |+....++..+..+.. + .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 332 2234455666655433 1 26
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec-----------CCCCCCChhhhCCCCcce
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT-----------NRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT-----------N~~~~id~aLlr~gRfd~ 809 (957)
+||||||+|.+. ...++.|+..++.. ...++++++. |.++.+++++++ ||..
T Consensus 191 ~vl~IDEi~~l~-------------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD-------------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp CEEEEESGGGSB-------------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred ceEEEhhccccC-------------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 799999999763 45667777777643 2244444433 347789999999 9965
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+.|++|+.+++.+|++..+...+.. .+..+..+++.+.+.+++++.++|+.|+..|..+. ...|+.+|+++++..+
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~--~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK--GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHS
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHh
Confidence 7999999999999999988775543 33457788888884499999999999999887764 6789999999999874
Q ss_pred C
Q 002169 889 Q 889 (957)
Q Consensus 889 ~ 889 (957)
.
T Consensus 331 ~ 331 (368)
T 3uk6_A 331 L 331 (368)
T ss_dssp B
T ss_pred c
Confidence 4
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=218.97 Aligned_cols=202 Identities=25% Similarity=0.329 Sum_probs=135.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
...++++++|.++..+.+.+.+. .....+++|+||||||||++|+++|..+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 35678999999998888877663 2345679999999999999999999987 889999
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHhC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++++.+. ..|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+ ...+.+.|...++ ..++.+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTCCCE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh----CCCeEE
Confidence 9998887 568899999999999999875 689999999999975543221 1223334444444 457889
Q ss_pred EEecCCCC----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC----CC-CcccHHHHHHHc-----cCCcHH
Q 002169 788 IAATNRPD----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CS-SDVNIRELACLS-----EGCTGA 853 (957)
Q Consensus 788 I~aTN~~~----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~----~~-~~~~l~~la~~t-----~g~sg~ 853 (957)
|++||.++ .+|+++.| ||+ .+.++.|+.+++.+|++.++.++. +. .+..+..++..+ .+|...
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99999775 47999999 998 499999999999999987776432 21 222344555444 345566
Q ss_pred HHHHHHHHHHHHHH
Q 002169 854 DISLICREAAISAI 867 (957)
Q Consensus 854 dl~~l~~eA~~~a~ 867 (957)
+...++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665443
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=189.62 Aligned_cols=219 Identities=19% Similarity=0.209 Sum_probs=169.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
.+.+.+|++++|++.+++.+.+++..... ...++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 34556899999999999999988864321 134567899999999999999999999999999999987652
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc----------------C
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----------------R 782 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~----------------~ 782 (957)
....+...+.. ...+++|||||||.+. ...+..|+..|+...- .
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLS-------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcC-------------HHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 23334444433 3456799999999763 4456677777765321 1
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
.++++|++||+...++++|++ ||+..+.+++|+.+++.++++.++.+.+.. .+..+..++..+.| +.+++.++++.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 229 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKR 229 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 148899999999999999999 999999999999999999999999877654 23346777776666 78999999998
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+...+.... ...|+.+++..++......
T Consensus 230 ~~~~a~~~~--~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 230 VRDFADVND--EEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHTT--CSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHhhc--CCccCHHHHHHHHHHhCCc
Confidence 887776543 5579999999998876543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=216.68 Aligned_cols=227 Identities=21% Similarity=0.251 Sum_probs=151.4
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc---
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS--- 718 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~--- 718 (957)
..-+++++|++++++.+.+.+...... ... ++..++|+||||||||++|++||+.++.+++.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 344678999999999998776432111 112 4557999999999999999999999999999999876543
Q ss_pred ------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc-----------
Q 002169 719 ------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----------- 781 (957)
Q Consensus 719 ------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~----------- 781 (957)
.|+|...+.+...|..+....| ||||||||.+...+. ...++.|+..|+....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc---------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 5777777778888888877766 999999999865432 1134557777764321
Q ss_pred --CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-----hcCCCCC------cccHHHHHHHcc
Q 002169 782 --RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSS------DVNIRELACLSE 848 (957)
Q Consensus 782 --~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-----~~~~~~~------~~~l~~la~~t~ 848 (957)
..+++||+|||+++.++++|++ ||+ +|+++.|+.+++.+|++.++ +..++.. +..+..++....
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 1578999999999999999999 995 79999999999999999877 3333321 223444444333
Q ss_pred -CCcHHHHHHHHHHHHHHH----HHHhcCCCCCCHHHHHHHHHhh
Q 002169 849 -GCTGADISLICREAAISA----IEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 849 -g~sg~dl~~l~~eA~~~a----~~~~~~~~~It~~d~~~al~~~ 888 (957)
....|++++.+..++..+ +........|+.+++.+++...
T Consensus 297 ~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 297 REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 234566665555544444 3333234568999999888653
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=191.99 Aligned_cols=241 Identities=20% Similarity=0.264 Sum_probs=167.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhc-CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l-~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
++++|++++++.+..++..+.........+ ....+.+++|+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 568999999999998876532221111100 1235678999999999999999999999999999999988866 56664
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEE
Q 002169 724 S-EKAVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIA 789 (957)
Q Consensus 724 ~-~~~ir~~f~~A-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~ 789 (957)
. ...++.++..+ ....++||||||+|.+....... ........+.+.|+..|++.. ...++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 3 34556665532 11235699999999987654221 111222345788888888642 234678888
Q ss_pred e----cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHH-----------HHhcCCC---CCcccHHHHHHHcc---
Q 002169 790 A----TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI-----------HLRKIPC---SSDVNIRELACLSE--- 848 (957)
Q Consensus 790 a----TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~-----------~l~~~~~---~~~~~l~~la~~t~--- 848 (957)
+ ++.+..+++++++ ||+..++|++|+.+++.+|++. .+...+. ..+..++.+++.+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 4577889999998 9998899999999999999983 1112222 12334666776662
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHHhcC--C--CCCCHHHHHHHHHhhC
Q 002169 849 ----GCTGADISLICREAAISAIEENLD--A--SRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 ----g~sg~dl~~l~~eA~~~a~~~~~~--~--~~It~~d~~~al~~~~ 889 (957)
+.+.|++.++|+.+...+..+... . ..|+.+|+++++....
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 358999999999887665544321 1 1499999999987653
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-18 Score=186.70 Aligned_cols=218 Identities=23% Similarity=0.297 Sum_probs=163.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+.+|++++|.+.+++.+.+.+..... ....+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4556899999999999999888764211 1234578999999999999999999999999999999877632
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
...+...|..+ ...+++|||||+|.+. ......|+..++... ...
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~-------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLS-------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCC-------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccc-------------cchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 22333333321 1456799999999763 334456666666432 113
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
++++|++||.+..+++++.+ ||+.++.+++|+.+++.++++.++.+.+.. .+..+..++..+.| +.+++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 57899999999999999998 998899999999999999999998876544 23446778888877 678999998877
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
...+... ....|+.+++..++.....
T Consensus 215 ~~~a~~~--~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 215 RDFAQVA--GEEVITRERALEALAALGL 240 (324)
T ss_dssp TTTSTTT--SCSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHh--cCCCCCHHHHHHHHHHhcc
Confidence 6655432 2457999999988877653
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-19 Score=208.62 Aligned_cols=169 Identities=21% Similarity=0.246 Sum_probs=86.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCC-CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~-~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
++|+|++++|+.+..++.+++++...+..+... +++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 579999999999999998877776665554432 5678999999999999999999999999999999999888 59995
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe-cCCCCCCChhh
Q 002169 724 -SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA-TNRPDKIDPAL 801 (957)
Q Consensus 724 -~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a-TN~~~~id~aL 801 (957)
.+..++.+|..|... +++||++.+.... .....++++++|+.+||++....++ +++ ||+++.+|+||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-----hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 789999999999875 4589988764322 2346689999999999998665454 454 99999999999
Q ss_pred hCCCCcceecccCCCCHH-HHHHHH
Q 002169 802 LRPGRFDRLLYVGPPNET-DREEIF 825 (957)
Q Consensus 802 lr~gRfd~~i~~~~P~~~-er~~Il 825 (957)
+||||||+.|+++.|+.. .|.+|+
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 999999999999999987 677775
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=183.66 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=158.3
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cccccch
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGES 724 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~~vg~~ 724 (957)
+.++|+....+.+.+.... ..+.+...+..++.++||+||||||||++|+++|..++.+|+.+++++.+ +...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4567777766655553211 12233344567778899999999999999999999999999999887532 2222233
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecCCCCCCCh-hhh
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDP-ALL 802 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN~~~~id~-aLl 802 (957)
...++.+|..+....++||||||+|.+...+... ......+++.|...+++.. ...+++||++||.++.+++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 4677889999988889999999999997654322 2345677777777777653 3446889999999988887 455
Q ss_pred CCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCC----cHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 803 RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGC----TGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 803 r~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~----sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
+ ||+..|.+|+++. |.+|.+.......+ .+.++..+++.+.|| +.+++.++++.|...+ .....
T Consensus 187 ~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-------~~~~~ 254 (272)
T 1d2n_A 187 N--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-------PEYRV 254 (272)
T ss_dssp T--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-------GGGHH
T ss_pred c--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-------hHHHH
Confidence 4 9988888866655 34444444433333 455688899999998 5778777777654322 23456
Q ss_pred HHHHHHHHhhCCC
Q 002169 879 QHLKTAIRHVQPS 891 (957)
Q Consensus 879 ~d~~~al~~~~p~ 891 (957)
+++..++......
T Consensus 255 ~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 255 RKFLALLREEGAS 267 (272)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCc
Confidence 6777777666554
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-18 Score=192.35 Aligned_cols=237 Identities=20% Similarity=0.252 Sum_probs=161.4
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHh-cC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc-cccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKR-IG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK-WVGE 723 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~-l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~-~vg~ 723 (957)
.|+|++.+++.+..++............ .. ..++.++||+||||||||++|++||+.++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999888543222211000 01 1356789999999999999999999999999999999888754 7777
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEeCCchhhhhcCCCCCCCcc-hHHHHHHHHHHHhccc-----------------
Q 002169 724 S-EKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGVSV-SDRVMSQLLVELDGLH----------------- 780 (957)
Q Consensus 724 ~-~~~ir~~f~~A----~~~~p~ILfiDEid~l~~~r~~~~~~~~~-~~~v~~~LL~~ld~~~----------------- 780 (957)
. ...++.+|..+ ....++||||||+|.+...+.....+... ..++++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55667777665 33456799999999998765443222222 2358999999999431
Q ss_pred --cCCcEEEEEecCCC----------CC-----------------------------------CChhhhCCCCcceeccc
Q 002169 781 --QRVNVTVIAATNRP----------DK-----------------------------------IDPALLRPGRFDRLLYV 813 (957)
Q Consensus 781 --~~~~v~VI~aTN~~----------~~-----------------------------------id~aLlr~gRfd~~i~~ 813 (957)
...++++|+++|.. .. +.|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11234444444432 11 6788887 99999999
Q ss_pred CCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHH--HccCCcHHHHHHHHHHHHHHHHHHhcCCC---
Q 002169 814 GPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELAC--LSEGCTGADISLICREAAISAIEENLDAS--- 874 (957)
Q Consensus 814 ~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~--~t~g~sg~dl~~l~~eA~~~a~~~~~~~~--- 874 (957)
++|+.+++.+|++. ++. ..+.. .+..++.|+. ....+.+|+|++++++++..++.+.....
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999998875 221 12222 2233556664 33456689999999999998887754332
Q ss_pred --CCCHHHHHHHH
Q 002169 875 --RITMQHLKTAI 885 (957)
Q Consensus 875 --~It~~d~~~al 885 (957)
.|+.+++++.+
T Consensus 334 ~~~I~~~~v~~~~ 346 (363)
T 3hws_A 334 KVVIDESVIDGQS 346 (363)
T ss_dssp EEECHHHHTTCCS
T ss_pred eeEEcHHHHhCcC
Confidence 36666665443
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=183.39 Aligned_cols=205 Identities=21% Similarity=0.250 Sum_probs=154.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEeccccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNY 370 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~~~~ 370 (957)
..|+++.|.+..++.+..++.... .+..++.++||+||||||||++|+++|+.++. +++.+++..+...+.
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred cchhhccChHHHHHHHHHHHHHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 347899999999988776654331 23445789999999999999999999999975 788888776544433
Q ss_pred ch-------------------------------------------------hHHHHHHHHHHHhc-----c----CCeEE
Q 002169 371 GE-------------------------------------------------SEQALHEVFDSASQ-----S----APAVV 392 (957)
Q Consensus 371 ge-------------------------------------------------~e~~i~~vf~~a~~-----~----~p~IL 392 (957)
+. ....++..|+.+.. . .|+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 22 23344555544332 1 26799
Q ss_pred EEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec-----------CCCCCchhhhhCCCCcceeeeec
Q 002169 393 FIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT-----------NRPDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 393 ~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt-----------N~~~~ld~al~r~gRfd~~I~i~ 461 (957)
||||+|.+. ....+.|+..++.. ...++++++. |.+..+++++++ ||.. +.++
T Consensus 194 ~IDEi~~l~-----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 194 FIDEVHMLD-----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEESGGGSB-----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEhhccccC-----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 999999884 24456677777653 2234444443 347789999999 9866 8999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 462 VPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 462 ~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.|+.+++.+|++..+......+++..++.++..+.+.+.+++..+++.|...|..+...
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~ 316 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGT 316 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999888778889999999999998778899999999999888765443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=198.02 Aligned_cols=200 Identities=23% Similarity=0.260 Sum_probs=139.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc--------
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-------- 367 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-------- 367 (957)
+++.|++++++.+.+.+...... +.+ ++.+++|+|||||||||+|+++|+.++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 46899999999998877655332 222 6789999999999999999999999999999998876543
Q ss_pred -cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc-------------CCCeE
Q 002169 368 -QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-------------TDGVL 433 (957)
Q Consensus 368 -~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~-------------~~~v~ 433 (957)
.++|.....+...|..+....| |+||||+|.+.+.+.. .....|+..|+.... ..+++
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ---------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 4567777777788887766655 9999999999765422 134557777765321 15689
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC-----C-----CCCCChHHHHHHHHHcCC-CcHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG-----M-----EHSLLDSEVEYLSMATHG-FVGAD 502 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~-----~-----~~~l~~~~l~~La~~t~g-~~gaD 502 (957)
||+|||+++.+++++++ ||+ .|.++.|+.+++.+|++.++.. . ...+++..+..++....+ ...++
T Consensus 227 iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~ 303 (543)
T 3m6a_A 227 FIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRS 303 (543)
T ss_dssp EEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHH
T ss_pred EEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhH
Confidence 99999999999999999 995 6999999999999999987622 1 334578888888775443 34455
Q ss_pred HHHHHHHHHH
Q 002169 503 LAALCNEAAL 512 (957)
Q Consensus 503 i~~l~~~A~~ 512 (957)
+++.+..+..
T Consensus 304 L~~~i~~~~~ 313 (543)
T 3m6a_A 304 LERQLAAICR 313 (543)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444333
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=177.65 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=159.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhh-hc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccch-
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLS-SL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE- 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~-~l-~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge- 372 (957)
.+.|.+.+++.+...+..+.....+. .+ .-..+.++||+||||||||++|+++|+.++.+++.+++.++.. .+.|.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999998876543221110 00 1135679999999999999999999999999999999998876 45553
Q ss_pred hHHHHHHHHHHHh-----ccCCeEEEEcCccccccCCcCCCch-HHHHHHHHHHHHhhccc--------cCCCeEEEEe-
Q 002169 373 SEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEE-LSQRMVATLLNLMDGVC--------RTDGVLVIAA- 437 (957)
Q Consensus 373 ~e~~i~~vf~~a~-----~~~p~IL~IDEiD~l~~~~~~~~~~-~~~~i~~~Ll~~ld~l~--------~~~~v~vI~t- 437 (957)
....++.+++.+. ...++||||||+|.+.+.....+.+ ....+...|+..|++.. ...++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 2345666666431 1236799999999998776543333 33345778888888641 2357888888
Q ss_pred ---cCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH----H-------H--cCCCCCCChHHHHHHHHHcC-----
Q 002169 438 ---TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA----L-------L--SGMEHSLLDSEVEYLSMATH----- 496 (957)
Q Consensus 438 ---tN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~----~-------l--~~~~~~l~~~~l~~La~~t~----- 496 (957)
++.+..+++++++ ||+..+.|+.|+.+++.+|++. + + ......+++..++.++..+.
T Consensus 176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 4567889999998 9998899999999999999983 1 1 22334578889999988763
Q ss_pred --CCcHHHHHHHHHHHHHHHH
Q 002169 497 --GFVGADLAALCNEAALVCL 515 (957)
Q Consensus 497 --g~~gaDi~~l~~~A~~~a~ 515 (957)
+...+.+..+++.+...+.
T Consensus 254 ~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 254 TENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp SCCCTTHHHHHHHHHHSHHHH
T ss_pred ccccCcHHHHHHHHHHHHhhh
Confidence 5678888888888765544
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=181.22 Aligned_cols=221 Identities=19% Similarity=0.295 Sum_probs=161.5
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh--hhcC-CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc-ccch
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL--SSLG-LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYGE 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~--~~l~-i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~-~~ge 372 (957)
.|.|++..++.+...+......... .... ..++.++||+||||||||++|+++|..++.+|+.+++.++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999999988654333111 0011 1367899999999999999999999999999999999988754 6776
Q ss_pred h-HHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhcc------------------
Q 002169 373 S-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGV------------------ 426 (957)
Q Consensus 373 ~-e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l------------------ 426 (957)
. ...++.+|+.+ ....++||||||+|.+.+.+.... .....++.+.|+..|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777765 334578999999999988765432 223345889999999842
Q ss_pred -ccCCCeEEEEecCCC----------CC-----------------------------------chhhhhCCCCcceeeee
Q 002169 427 -CRTDGVLVIAATNRP----------DS-----------------------------------IEPALRRPGRLDREIEI 460 (957)
Q Consensus 427 -~~~~~v~vI~ttN~~----------~~-----------------------------------ld~al~r~gRfd~~I~i 460 (957)
-...++++|+++|.. .. +.|+|.+ ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 122344555555532 11 5677777 99999999
Q ss_pred cCCCHHHHHHHHHH----HH-------c--CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 461 AVPSPAQRLEILHA----LL-------S--GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 461 ~~P~~~~r~~Il~~----~l-------~--~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
.+|+.+++.+|+.. ++ . .....+++..++.|+.. ...+..++|+++++.+...++.+..
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999999875 22 1 23345688889999874 4566678999999999888876653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-16 Score=159.23 Aligned_cols=203 Identities=21% Similarity=0.213 Sum_probs=151.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~ 713 (957)
..++..|++++|.+++++.+.+++.. ....+++|+||||||||++|+++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 35667899999999999999888753 123359999999999999999999875 456888887
Q ss_pred CCcccccccchHHHHHHHHHHHH------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
..... ...++..+.... ...+.+|+|||+|.+.. ...+.|+..++.. ..++.+
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~l~~~l~~~--~~~~~~ 135 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEMY--SKSCRF 135 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-------------HHHHHHHHHHHHT--TTTEEE
T ss_pred ccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-------------HHHHHHHHHHHhc--CCCCeE
Confidence 65432 122333333322 25678999999997632 3345566666643 346888
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.++.+++++.+ ||. .+.+++|+.++..++++..+.+.+.. .+..+..+++.+.| +.+.+.++++.++..+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 9999999999999999 887 89999999999999999888765543 23456778888877 6777777777666443
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 002169 867 IEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~ 886 (957)
..|+.+|++.++.
T Consensus 212 -------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------EVVDADTIYQITA 224 (226)
T ss_dssp -------SCBCHHHHHHHHH
T ss_pred -------ceecHHHHHHHhc
Confidence 5799999998875
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-16 Score=172.84 Aligned_cols=194 Identities=17% Similarity=0.210 Sum_probs=151.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|+++.|.+..++.+..++...... -.+..++||+||||||||++|+++|+.++.+++.++|..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------ 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------ 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------
Confidence 46789999999999999987655221 23567899999999999999999999999999999987653
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~ 436 (957)
....+...+.. ...+++|||||+|.+. ......|+..|+... ...++++|+
T Consensus 93 ~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 93 KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 12233344433 2457899999999884 234556777776531 012489999
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
+||+...+++++++ ||+..+.++.|+.+++.++++..+......+++..++.++....|. .+.+..+++.+...+.
T Consensus 160 atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 160 ATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRLLKRVRDFAD 235 (338)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHHHHHHHHHHH
T ss_pred eCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998888778899999999966664 5777777777655443
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=171.42 Aligned_cols=205 Identities=21% Similarity=0.243 Sum_probs=142.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccchhHH
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGESEQ 375 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge~e~ 375 (957)
.+.|..+..+.+.+..... ...+...+..++.++||+||||||||++|+++|..++.+++.+++++... ...+....
T Consensus 34 ~~i~~~~~~~~i~~~~~~l--~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~ 111 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELL--VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ 111 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHH--HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHH--HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHH
Confidence 4667777666555531111 12223345567889999999999999999999999999999998875322 22233446
Q ss_pred HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchh-hhhCCCC
Q 002169 376 ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEP-ALRRPGR 453 (957)
Q Consensus 376 ~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~-al~r~gR 453 (957)
.++.+|+.+....+++|||||+|.+++.+..+ ......++..|...++... ...++++|++||.++.+++ .+++ |
T Consensus 112 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--r 188 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--A 188 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--T
T ss_pred HHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--c
Confidence 78889998887788999999999997655322 2234566677777777653 2345789999999998888 5555 9
Q ss_pred cceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC----cHHHHHHHHHHH
Q 002169 454 LDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF----VGADLAALCNEA 510 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~----~gaDi~~l~~~A 510 (957)
|+..|.++.++. |.+|.+.+... ..+++..+..++..+.|| ..+++.++++.|
T Consensus 189 f~~~i~~p~l~~--r~~i~~i~~~~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 189 FSTTIHVPNIAT--GEQLLEALELL--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp SSEEEECCCEEE--HHHHHHHHHHH--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred cceEEcCCCccH--HHHHHHHHHhc--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 988887765554 33333333222 234788899999999997 455666666554
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=172.53 Aligned_cols=225 Identities=19% Similarity=0.195 Sum_probs=160.0
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeC
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKG 713 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~ 713 (957)
...++++|.++..+.+.+++.... ....+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 344889999999999888774321 12456789999999999999999999988 788999998
Q ss_pred CCcccc----------------cccchHHH-HHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 714 PELFSK----------------WVGESEKA-VRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 714 ~~l~~~----------------~vg~~~~~-ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
....+. ..|..... ...++..... ..|+||||||+|.+...+ ....++..++..
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhc
Confidence 764321 11222223 3444444433 348899999999886431 123444555555
Q ss_pred HhccccCCcEEEEEecCCC---CCCChhhhCCCCcce-ecccCCCCHHHHHHHHHHHHhc--CC-CCCcccHHHHHHHcc
Q 002169 776 LDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRK--IP-CSSDVNIRELACLSE 848 (957)
Q Consensus 776 ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~-~i~~~~P~~~er~~Il~~~l~~--~~-~~~~~~l~~la~~t~ 848 (957)
++......++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++..+.. .+ ...+..+..+++.+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5433214578999999988 678999998 8875 8999999999999999988864 11 123345677888887
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 849 ---GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 ---g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
| +.+.+.++|+.|+..|..+. ...|+.+|+..++....
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRR--EERVRREHVYSARAEIE 277 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTT--CSCBCHHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHh
Confidence 7 67888999999988776543 56799999999987653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=181.90 Aligned_cols=221 Identities=16% Similarity=0.268 Sum_probs=153.0
Q ss_pred CCccccccC-ChHH--HHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEe
Q 002169 641 PKVKWEDVG-GQRE--VKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVK 712 (957)
Q Consensus 641 p~v~~~di~-G~~~--vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~ 712 (957)
|..+|++++ |... +...+......+ + . +.+++||||||||||++|++|++++ +.+++.++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456888876 5433 333443333321 1 2 5689999999999999999999988 78899998
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
+.++...+.+.........|.......++||||||+|.+.+. ......++..++.+...+..+||++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----------~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----------TGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----------HHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----------hHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 877654433322221122344444436889999999988532 123345555555544443444444444
Q ss_pred CCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 793 RPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 793 ~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
.+.. +++++++ ||. .++.+++|+.++|.+|++..+...++. .+..+..++..+.| +.+++.++++.+...|
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 4443 7899999 886 789999999999999999988754433 23347888988887 8999999999998877
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p 890 (957)
... ...|+.+++++++....+
T Consensus 314 ~~~---~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 314 ETT---GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHS---SSCCCHHHHHHHTSTTTC
T ss_pred HHh---CCCCCHHHHHHHHHHHhh
Confidence 654 346999999999988763
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=174.15 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=141.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
...+.+|++++|++++++.+.+++.. ...+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 44567899999999999999888752 23456688899999999999999999999999999987642
Q ss_pred ccccchHHHHHHHHHHHHhC-----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 719 KWVGESEKAVRSLFAKARAN-----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~-----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
...++..+..+... .+.||||||+|.+.. ....+.|+..++.. ..++.+|++||+
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~--~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY--SSNCSIIITANN 145 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH--GGGCEEEEEESS
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC--CCCcEEEEEeCC
Confidence 34555555543332 568999999998741 33456777777754 346789999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-------hcCCCC-Cc-ccHHHHHHHccCCcHHHHHHHHHHHHH
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-------RKIPCS-SD-VNIRELACLSEGCTGADISLICREAAI 864 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-------~~~~~~-~~-~~l~~la~~t~g~sg~dl~~l~~eA~~ 864 (957)
+..+++++++ ||. ++.|++|+.+++.+|++.+. .+.++. .+ ..+..+++.+.| +.+++.+.++.++
T Consensus 146 ~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~- 220 (324)
T 3u61_B 146 IDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS- 220 (324)
T ss_dssp GGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG-
T ss_pred ccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh-
Confidence 9999999999 984 79999999998766654433 223333 23 457778888777 4555555555444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHH
Q 002169 865 SAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 865 ~a~~~~~~~~~It~~d~~~al~ 886 (957)
. ...|+.+++..++.
T Consensus 221 ----~---~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 ----S---KGVLDAGILSLVTN 235 (324)
T ss_dssp ----G---GTCBCC--------
T ss_pred ----c---cCCCCHHHHHHHhC
Confidence 1 23466666655443
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=208.04 Aligned_cols=356 Identities=14% Similarity=0.169 Sum_probs=188.5
Q ss_pred CCCCeEEEEcCCCChHHHHH-HHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHh---------------ccCCe
Q 002169 327 RPTKGVLLHGPPGTGKTSLA-RLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS---------------QSAPA 390 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLa-ralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~---------------~~~p~ 390 (957)
..++++||+||||||||++| ++++...+..++.++++...+. ..+...++... ...++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 34689999999999999999 5555555677888887665432 23444444321 12357
Q ss_pred EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc--------CCCeEEEEecCCCC-----CchhhhhCCCCccee
Q 002169 391 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--------TDGVLVIAATNRPD-----SIEPALRRPGRLDRE 457 (957)
Q Consensus 391 IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~--------~~~v~vI~ttN~~~-----~ld~al~r~gRfd~~ 457 (957)
||||||++.....+ .+.+....++.++++. .++.. -.++.+|+|||++. .+++++.| || ..
T Consensus 1339 VlFiDEinmp~~d~--yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1339 VLFCDEINLPKLDK--YGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEEEETTTCSCCCS--SSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred EEEecccccccccc--cCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 99999998744333 3344444555554431 12211 13589999999994 89999999 88 66
Q ss_pred eeecCCCHHHHHHHHHHHHcCCCCCCChH--HHHH-----------HHH-------HcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 458 IEIAVPSPAQRLEILHALLSGMEHSLLDS--EVEY-----------LSM-------ATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 458 I~i~~P~~~~r~~Il~~~l~~~~~~l~~~--~l~~-----------La~-------~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++.|+.+++..|++.+++.+-...++. ..+. +.. ...-|+.+|+..+++.........
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~ 1492 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTG 1492 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchh
Confidence 99999999999999998876432110110 0111 111 124588999999887644321110
Q ss_pred hccc--cccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcc
Q 002169 518 YSKI--QTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFH 595 (957)
Q Consensus 518 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (957)
.... .-...+.|++.++| .|..++.-| . .+ ....+.+......
T Consensus 1493 ~~~~~~~l~rLw~HE~~Rvf-------------------~DRLv~~~D-------------~-~~--f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1493 PRQTLRSLIRLWAYEAWRIF-------------------ADRLVGVKE-------------K-NS--FEQLLYETVDKYL 1537 (2695)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-------------------TTTCCSSHH-------------H-HH--HHHHHHHHHHHHS
T ss_pred hhccHHHHHHHHHHHHHHHH-------------------HHhcCCHHH-------------H-HH--HHHHHHHHHHHHh
Confidence 0000 00123455555554 111110000 0 00 0011111111100
Q ss_pred cCCC-C--CCCCCcccccc--ccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHH
Q 002169 596 NGVS-D--SSGGMFMSEKG--CALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQE 670 (957)
Q Consensus 596 ~~~~-~--~~~~~~~~e~~--~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~ 670 (957)
.... + ..+..+..+.. ....++.+++...+. ..+.+...+.. . -+++--+++.+ |--
T Consensus 1538 ~~~~~~~~~~~~~~f~df~~~~Y~~v~~~~l~~~l~----~~l~~yn~~~~--~-m~LVlF~dai~-----------Hi~ 1599 (2695)
T 4akg_A 1538 PNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIE----ERFKTFCDEEL--E-VPMVIHESMVD-----------HIL 1599 (2695)
T ss_dssp CCSCCCCCSTTTCCEESSSSSSCEECCHHHHHHHHH----HHHHHHHHHSC--C-CCCCCCHHHHH-----------HHH
T ss_pred cccchhhhccCCceeeecCCCcceecCHHHHHHHHH----HHHHHHHhhcC--C-ceeeeHHHHHH-----------HHH
Confidence 0000 0 00000000000 000111111111111 01111100000 0 01222222222 222
Q ss_pred HHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHH-hCCCeEEEEeCCc
Q 002169 671 AFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKAR-ANAPSIIFFDEID 749 (957)
Q Consensus 671 ~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~-~~~p~ILfiDEid 749 (957)
.+.++-..|..++||+|++|+||++++|..|...+..++.+....-++ ..+....++.++.+|- .+.|.+++|+|.+
T Consensus 1600 RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1600 RIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp HHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred HHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 223333456678999999999999999999999999999888665433 3456788899998884 5667788888843
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-16 Score=177.17 Aligned_cols=239 Identities=21% Similarity=0.243 Sum_probs=152.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHH-----------------hcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFK-----------------RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF 708 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~-----------------~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~ 708 (957)
++|+|++++|+.+..++...+....... .-...++.+++|+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988854333322210 11234567899999999999999999999999999
Q ss_pred EEEeCCCcc-cccccch-HHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccc-
Q 002169 709 LAVKGPELF-SKWVGES-EKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLH- 780 (957)
Q Consensus 709 i~v~~~~l~-~~~vg~~-~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~- 780 (957)
+.+++..+. ..|.|.. ...+..++..+. ...++||||||+|.+...+..... .......+++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999988775 3466654 344555555432 235679999999998765422111 11122458889999998541
Q ss_pred ------------------cCCcEEEEEecCCC-----------------------------------------CCCChhh
Q 002169 781 ------------------QRVNVTVIAATNRP-----------------------------------------DKIDPAL 801 (957)
Q Consensus 781 ------------------~~~~v~VI~aTN~~-----------------------------------------~~id~aL 801 (957)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456778877621 1246777
Q ss_pred hCCCCcceecccCCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHHcc--CCcHHHHHHHHHHHHHH
Q 002169 802 LRPGRFDRLLYVGPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACLSE--GCTGADISLICREAAIS 865 (957)
Q Consensus 802 lr~gRfd~~i~~~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~~t~--g~sg~dl~~l~~eA~~~ 865 (957)
++ ||+.++.|++++.++..+|++. ++. ..+.. .+..+..++.... ..+.|+++++++.++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9988999999999999988862 111 11111 2233566666543 34789999999999988
Q ss_pred HHHHhcC----CCCCCHHHHHHHHH
Q 002169 866 AIEENLD----ASRITMQHLKTAIR 886 (957)
Q Consensus 866 a~~~~~~----~~~It~~d~~~al~ 886 (957)
++.+... ...|+.+++..+.+
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHhhccCCCCCEEEEeHHHhcCCCC
Confidence 8776432 22588888876543
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=171.88 Aligned_cols=232 Identities=21% Similarity=0.249 Sum_probs=141.7
Q ss_pred HHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 625 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 625 ~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+..+.|++... ...+..+|++++|++++++.+...... ....++||+||||||||++|+++|+.+
T Consensus 5 ~~~~~~~~~~~--~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 5 VARLQPSASGA--KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp ---------------CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ccccCCcccCC--CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhC
Confidence 33444444433 344678999999999988765443321 123469999999999999999999988
Q ss_pred CC-------c--------------------------EEEEeCCCcccccccchHHHHHHHHHHH---------HhCCCeE
Q 002169 705 GL-------N--------------------------FLAVKGPELFSKWVGESEKAVRSLFAKA---------RANAPSI 742 (957)
Q Consensus 705 ~~-------~--------------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A---------~~~~p~I 742 (957)
+. + ++.+..........|... +...+..+ ....++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~v 147 (350)
T 1g8p_A 70 PEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGY 147 (350)
T ss_dssp CCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEE
T ss_pred ccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCE
Confidence 63 1 222111110001111100 01111111 0113569
Q ss_pred EEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCccee
Q 002169 743 IFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRL 810 (957)
Q Consensus 743 LfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~ 810 (957)
|||||+|.+. ...++.|+..|+... ...++++|++||..+ .++++|++ ||+..
T Consensus 148 l~iDEi~~l~-------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~ 212 (350)
T 1g8p_A 148 LYIDECNLLE-------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLS 212 (350)
T ss_dssp EEETTGGGSC-------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEE
T ss_pred EEEeChhhCC-------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceE
Confidence 9999999763 345667777776421 113788999999754 79999999 99988
Q ss_pred cccCCC-CHHHHHHHHHHHHh-------------------------------cCCCCCcccHHHHHHHccCC---cHHHH
Q 002169 811 LYVGPP-NETDREEIFRIHLR-------------------------------KIPCSSDVNIRELACLSEGC---TGADI 855 (957)
Q Consensus 811 i~~~~P-~~~er~~Il~~~l~-------------------------------~~~~~~~~~l~~la~~t~g~---sg~dl 855 (957)
+.+++| +.+++.+|++..+. ...+ .+..+..++....+. +.|.+
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHH
Confidence 999988 56677788765311 1122 223345555554432 56999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.++++.|...|..+. ...|+.+|+.+++..+..+
T Consensus 292 ~~ll~~a~~~A~~~~--~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 292 LTLLRSARALAALEG--ATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcC--CCcCCHHHHHHHHHHHHhh
Confidence 999999888887654 4579999999998876544
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-16 Score=171.34 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=148.5
Q ss_pred CCccccccC-Ch--HHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCC
Q 002169 641 PKVKWEDVG-GQ--REVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 714 (957)
Q Consensus 641 p~v~~~di~-G~--~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~ 714 (957)
|..+|++++ |. ..+...+...+.++ ...+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 556788886 43 44455555544432 1245789999999999999999999988 8999999987
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
++...+.+.........|..... .+++|||||+|.+... ......++..++........+|+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~-----------~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK-----------ERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC-----------HHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC-----------hHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 77554444332222233333332 3779999999987532 12333455555544444456666677666
Q ss_pred C---CCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH---
Q 002169 795 D---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS--- 865 (957)
Q Consensus 795 ~---~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~--- 865 (957)
. .+++++.+ ||. ..+.+++ +.+++.+|++.++...++. .+..+..++..+ | +.+++.++++.++..
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~ 217 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFE 217 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHH
Confidence 5 68999998 886 6789999 9999999999999866543 233477888888 6 789999999887765
Q ss_pred HHHHhcCCCCC-CHHHHHHHHHh
Q 002169 866 AIEENLDASRI-TMQHLKTAIRH 887 (957)
Q Consensus 866 a~~~~~~~~~I-t~~d~~~al~~ 887 (957)
++. ......| +.+++.+++..
T Consensus 218 ~l~-~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 218 GLE-RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-cccccCCCCHHHHHHHHHH
Confidence 111 0012347 77888887765
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=183.49 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=145.9
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
....++++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3456789999999999988877642 345679999999999999999999986 77888
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
.+++. .+|.|+++..++.+|..+....+.||||| . . ..+.+.|+..| ..+.+++|+
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~-------~--------~~a~~~L~~~L----~~g~v~vI~ 296 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A--------IDASNILKPSL----ARGELQCIG 296 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC--C-----------------------CCCT----TSSSCEEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--C-------c--------hhHHHHHHHhh----cCCCEEEEe
Confidence 88877 77889889999999999998889999999 0 0 01222333333 355899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC----CC-CcccHHHHHHHccCCc-----HHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CS-SDVNIRELACLSEGCT-----GAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~----~~-~~~~l~~la~~t~g~s-----g~d 854 (957)
+||.++ .+|+++.| ||. .|.|+.|+.+++..|++.++.++. .. .+..+..++..+.+|. .++
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcH
Confidence 999998 68999999 997 699999999999999998887632 22 2334566666665554 558
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 855 ISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
...++.+|+..+..+.. ..+-....+++.+..+
T Consensus 374 ai~ll~~a~~~~~~~~~-~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRSF-TTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHH
Confidence 88999988876655442 2333445555554443
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=156.95 Aligned_cols=203 Identities=20% Similarity=0.251 Sum_probs=150.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc------------
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------ 707 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~------------ 707 (957)
..+..|++++|.+++++.+.+.+.. ...+..++|+||||||||++|+++++.++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4556789999999999999888753 1234569999999999999999999887432
Q ss_pred ------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHH
Q 002169 708 ------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 771 (957)
Q Consensus 708 ------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~ 771 (957)
++.+.... ......++.++..+. ...+.+|+|||+|.+ ....++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~ 145 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNA 145 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHH
Confidence 22222211 112334555555543 235789999999976 2345667
Q ss_pred HHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCC
Q 002169 772 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 850 (957)
Q Consensus 772 LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~ 850 (957)
|+..++.. ..++.+|++||.+..+++++.+ |+ ..+.+++++.++..++++.++.+.+.. .+..+..+++.+.|
T Consensus 146 l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 219 (250)
T 1njg_A 146 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 219 (250)
T ss_dssp HHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-
T ss_pred HHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Confidence 77777743 4478899999999999999998 76 689999999999999999988765543 23457788899988
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 851 TGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 851 sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+.+.+.++++.|+..+ ...|+.+++++++
T Consensus 220 ~~~~~~~~~~~~~~~~------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 SLRDALSLTDQAIASG------DGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHTTT------TSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcc------CceecHHHHHHHh
Confidence 8899999998875332 3479999998875
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-16 Score=199.74 Aligned_cols=150 Identities=20% Similarity=0.248 Sum_probs=110.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-----------hhhhh------c------------CCCCCCeEEEEcCCCCh
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-----------STLSS------L------------GLRPTKGVLLHGPPGTG 341 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-----------~~~~~------l------------~i~~~~~vLL~GppGtG 341 (957)
...+|++++|+++.+..+.+.+.+++.+ +.++. . |++.++.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3468999999999999999999998733 23333 1 24456669999999999
Q ss_pred HHHHHHHHHHHc---CCcEEEEeccccc------------ccccch----hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 342 KTSLARLCAHDS---GVNLFTVNGPEVV------------SQNYGE----SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 342 KTtLaralA~~l---~~~~i~i~~~~l~------------~~~~ge----~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
||+||++++.+. |.+.+.|+..+.. ++++++ +|+.++.+|..|+...|+++|+||+|+|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999766 4455566655533 556677 899999999999999999999999999999
Q ss_pred CCc---CCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 403 ARK---DGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 403 ~~~---~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.+. ..+ .....|++++++..|+++....+++|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 842 111 256778899999999998888888877 77764
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=165.86 Aligned_cols=190 Identities=21% Similarity=0.316 Sum_probs=146.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|+++.|.+..++.+.+.+...... -..+.+++|+||||||||++|+++++.++.+++.+++..+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~----- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK----- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-----
Confidence 46788999999999999887554221 134678999999999999999999999999999999877632
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~ 436 (957)
...+...|..+ ...+.+|||||+|.+.. .....|+..++... ...++.+|+
T Consensus 77 -~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 77 -PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 22223333321 23578999999998742 23345666666531 113578999
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
+||.+..+++++.+ ||+..+.++.|+.+++.++++.++...+..+++..++.++..+.|.. +.+..+++.+
T Consensus 144 ~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHH
T ss_pred eCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 99999999999988 99888999999999999999999988888889999999999987654 6666666654
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-15 Score=158.57 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=143.1
Q ss_pred CccccccCCh---HHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCC
Q 002169 642 KVKWEDVGGQ---REVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPE 715 (957)
Q Consensus 642 ~v~~~di~G~---~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~ 715 (957)
..+|++++|. +.+.+.+..++.+ ..+.+++|+||||||||++|++++.++. .+++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4678888862 4556656555432 2457899999999999999999998764 6788888877
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~ 794 (957)
+...+.. .+.. ...+.+|||||++.+... ......++..++.......+.+|++|| .+
T Consensus 91 ~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~-----------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTA--------LLEG--LEQFDLICIDDVDAVAGH-----------PLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC-----------HHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHH--------HHHh--ccCCCEEEEeccccccCC-----------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 6544211 1111 134679999999987421 112334555555443333443444444 44
Q ss_pred C---CCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 002169 795 D---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIE 868 (957)
Q Consensus 795 ~---~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~ 868 (957)
. .+++++.+ ||. ..+.+++|+.+++.++++.++...+.. .+..+..+++.+.| +.+++.++++.+...|..
T Consensus 150 ~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 150 MEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp TTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 3 45688988 875 799999999999999999998766543 23446778888877 899999999999888865
Q ss_pred HhcCCCCCCHHHHHHHHH
Q 002169 869 ENLDASRITMQHLKTAIR 886 (957)
Q Consensus 869 ~~~~~~~It~~d~~~al~ 886 (957)
+. ..|+.++++++++
T Consensus 227 ~~---~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 HQ---RKLTIPFVKEMLR 241 (242)
T ss_dssp HT---CCCCHHHHHHHHT
T ss_pred hC---CCCcHHHHHHHhh
Confidence 53 4699999998875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=159.85 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=159.3
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
+...+|++++|++.+++.+...+..... .-.++.+++|+|||||||||+|++||++++.++...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 3445788999999998888776643211 1234577999999999999999999999999988777765432
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
...+..++.. ....+|+|+||+|.+.+ .+.+.++..++... ...
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC---------------C
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 2233333332 23457999999998743 12233333333211 012
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
.+.++++|+++..+++++++ ||...+.+++|+.+++.+|++...+..+... +..+..++..+.| +.+++.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46778899999999999999 9988889999999999999999887666543 3346788888888 779999999998
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
...|..+. ...|+.+++++++.....
T Consensus 227 ~~~a~~~~--~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 227 RDMLTVVK--ADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp HHHHHHHT--CSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCCcCHHHHHHHHHHhCC
Confidence 88877654 557999999999988764
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-16 Score=181.89 Aligned_cols=226 Identities=16% Similarity=0.193 Sum_probs=145.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhc-hhhcHHHHHhcCCC---CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEW-PQKHQEAFKRIGTR---PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~-~~~~~~~~~~l~~~---~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
...+.+|++++|++++++.+.+++.. ....+..++..+.. +++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 45667899999999999999998864 22222333333332 567899999999999999999999999999999998
Q ss_pred CcccccccchHH-------HHHHHHHHH-----HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 715 ELFSKWVGESEK-------AVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 715 ~l~~~~vg~~~~-------~ir~~f~~A-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
++...+.....- .++.+|..+ ....++||||||+|.+.... ...+..|+..++.. .
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----------~~~l~~L~~~l~~~--~ 179 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRKT--S 179 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHHC--S
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----------HHHHHHHHHHHHhc--C
Confidence 876543221110 022333333 23567899999999885421 11244566666532 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
..+++|+++.....+ +.+.| +...+.|++|+.+++.++++..+.+.++. .+..+..+++.+.| +.+.+.++++.
T Consensus 180 ~~iIli~~~~~~~~l-~~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L~~ 254 (516)
T 1sxj_A 180 TPLILICNERNLPKM-RPFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLLST 254 (516)
T ss_dssp SCEEEEESCTTSSTT-GGGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHHTH
T ss_pred CCEEEEEcCCCCccc-hhhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 233333333322333 34443 44689999999999999998877554332 23457888888877 44444444433
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+ +. ....|+.+++..++...
T Consensus 255 ~---~~----~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 255 I---ST----TTKTINHENINEISKAW 274 (516)
T ss_dssp H---HH----HSSCCCTTHHHHHHHHH
T ss_pred H---Hh----cCCCCchHHHHHHHHhh
Confidence 2 22 13467878877776643
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-15 Score=167.44 Aligned_cols=213 Identities=19% Similarity=0.234 Sum_probs=151.8
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----------CCcEEEEeCC
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----------GLNFLAVKGP 714 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----------~~~~i~v~~~ 714 (957)
++++|.++.++.+.+.+.... ....+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 789999999999988775321 12345689999999999999999999987 8899999865
Q ss_pred Ccc-cc-----------------cccch-HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 715 ELF-SK-----------------WVGES-EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 715 ~l~-~~-----------------~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
... .. ..+.. ...+..++..+... +.||||||+|.+..... ..+ ++..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~---------~~~---~l~~ 157 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG---------GDI---VLYQ 157 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT---------SHH---HHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC---------Cce---eHHH
Confidence 432 10 11221 22234444444444 34999999999864320 111 1222
Q ss_pred HhccccCCcEEEEEecCCC---CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-C--CCCCcccHHHHHHHcc-
Q 002169 776 LDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-I--PCSSDVNIRELACLSE- 848 (957)
Q Consensus 776 ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-~--~~~~~~~l~~la~~t~- 848 (957)
+-... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..++++.++.. + ....+..+..+++.+.
T Consensus 158 l~~~~--~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 158 LLRSD--ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp HHTSS--SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred HhcCC--cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 22222 588999999987 678999998 88779999999999999999998863 1 1123345677888877
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 849 --GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 --g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
| +.+.+.++|+.|+..|. ....|+.+|+..++....
T Consensus 234 ~~G-~~r~a~~~l~~a~~~a~----~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQLAS----GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCC-CHHHHHHHHHHHHHHTT----SSSCCCHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHHhc----CCCccCHHHHHHHHHHHh
Confidence 5 56778888888887764 356799999999987764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-15 Score=164.53 Aligned_cols=196 Identities=14% Similarity=0.264 Sum_probs=138.7
Q ss_pred ccccccC-C--cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccc
Q 002169 293 QDISKLG-G--LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVV 366 (957)
Q Consensus 293 ~~~~~i~-G--l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~ 366 (957)
.+|+++. | .......++.++..+ -..+.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 4566664 3 334444555554332 1246789999999999999999999988 8899999998876
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC---C
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---S 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---~ 443 (957)
..+.+.........|.... ..+++|||||+|.+..++ .....++..++.....+..+|+++++.+. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 5544433332222333322 247899999999985421 22344556665554455567777777766 6
Q ss_pred chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 444 IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 444 ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
+++++++ ||. ..+++++ +.+++.+|++..+...+..+++..++.++..+ | ..+++..+++.+...
T Consensus 148 l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 148 VSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp SCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 7899998 886 5688998 99999999999998888888999999999998 4 567777777665443
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=167.07 Aligned_cols=212 Identities=19% Similarity=0.163 Sum_probs=147.1
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC------c
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------L 716 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~------l 716 (957)
..+++++|++++++.+...+.. ..+++|+||||||||++|+++|+.++.+++.+++.. +
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467899999999888776642 358999999999999999999999999999988742 1
Q ss_pred ccccccchHHHHHHHHHHHHhCC---CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc---------ccCCc
Q 002169 717 FSKWVGESEKAVRSLFAKARANA---PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL---------HQRVN 784 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~---p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~---------~~~~~ 784 (957)
.+........ ..+. .... .+||||||++.+ ....++.|+..|+.. ....+
T Consensus 89 ~g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~ 150 (331)
T 2r44_A 89 IGTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRS-------------PAKVQSALLECMQEKQVTIGDTTYPLDNP 150 (331)
T ss_dssp HEEEEEETTT---TEEE--EEECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred CCceeecCCC---CceE--eccCcccccEEEEEccccC-------------CHHHHHHHHHHHhcCceeeCCEEEECCCC
Confidence 1111100000 0000 0011 269999999965 345566777777642 12335
Q ss_pred EEEEEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----------------------C
Q 002169 785 VTVIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----------------------S 836 (957)
Q Consensus 785 v~VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----------------------~ 836 (957)
++||+++|..+ .+++++++ ||+..+.++.|+.+++.+|++.+....... .
T Consensus 151 ~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 151 FLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp CEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred EEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 77888888543 38999999 998889999999999999999887653211 1
Q ss_pred cccHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 837 DVNIRELACLS-------------------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 837 ~~~l~~la~~t-------------------~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+..++.++... .|.+.|.+..+++.|...|..+. ...|+.+|+.+++..+..+
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g--~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN--RDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHhHh
Confidence 11133333221 25689999999998887776654 5579999999999876554
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-16 Score=159.00 Aligned_cols=160 Identities=24% Similarity=0.373 Sum_probs=118.0
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
....|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 456789999999998888777632 345679999999999999999999986 678888
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
+++..+. ..+.+.....++.++..+. ...++||||||+|.+...+.... . ... .+.+...++ ..++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~-~~~---~~~l~~~~~----~~~~~~ 154 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-A-MDA---GNMLKPALA----RGELHC 154 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------C-CCC---HHHHHHHHH----TTSCCE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-h-HHH---HHHHHHhhc----cCCeEE
Confidence 8877665 3456666777888887664 45688999999999875432211 1 111 222223333 346788
Q ss_pred EEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHH
Q 002169 788 IAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIF 825 (957)
Q Consensus 788 I~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il 825 (957)
|++||.++ .+++++.+ ||+ .+++++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 99998876 78999999 997 6899999999998875
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-15 Score=164.41 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=152.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC------CcEEEEe
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------LNFLAVK 712 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~------~~~i~v~ 712 (957)
...+.+|++++|++++++.+..++.. ....+++|+||||||||++|+++|+.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 45677899999999999998888753 1223499999999999999999998864 4688888
Q ss_pred CCCcccccccchHHHHHHHHHHHH----------------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 713 GPELFSKWVGESEKAVRSLFAKAR----------------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~----------------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
+++..+ ...++..+.... ...+.||||||+|.+. ....+.|+..|
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-------------~~~~~~Ll~~l 157 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-------------ADAQSALRRTM 157 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-------------HHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-------------HHHHHHHHHHH
Confidence 776422 112222222111 1345699999999773 23456677777
Q ss_pred hccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHH
Q 002169 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADI 855 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl 855 (957)
+... .+..+|++||.++.+++++.+ ||. .+.+++|+.++...+++..+.+.++. .+..+..+++.+.| +.+.+
T Consensus 158 e~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 158 ETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRG 231 (353)
T ss_dssp HHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHH
T ss_pred HhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 7543 356788889999999999999 885 88999999999999999888765543 34457888888887 67777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.++++.++..+-... ....|+.+++.+++....
T Consensus 232 ~~~l~~~~~~~~~~~-~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 232 ITLLQSASKGAQYLG-DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHHTHHHHHHHC-SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcCCCc-cCccccHHHHHHHhCCCC
Confidence 777777766553321 112699999998877433
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=167.95 Aligned_cols=205 Identities=21% Similarity=0.308 Sum_probs=143.6
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc--
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK-- 719 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~-- 719 (957)
.++++|++.+++.+...+...... + .-..++..+++|+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~---~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAG---L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHT---C-SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcC---C-CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 457889999999998887542110 0 0011233469999999999999999999987 567999998765432
Q ss_pred ---cc-------cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc--------
Q 002169 720 ---WV-------GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-------- 781 (957)
Q Consensus 720 ---~v-------g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~-------- 781 (957)
+. |.... ..+.........+||||||+|.+ ...+++.|+..|+...-
T Consensus 92 ~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp HHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCEE
T ss_pred HHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCEE
Confidence 11 11110 12233333444589999999966 35677788888875421
Q ss_pred -CCcEEEEEecCC--------------------------CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC--
Q 002169 782 -RVNVTVIAATNR--------------------------PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-- 832 (957)
Q Consensus 782 -~~~v~VI~aTN~--------------------------~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-- 832 (957)
..++++|+|||. ...++++|++ ||+..+.+++|+.+++..|++.++.+.
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 136779999998 4467889998 999999999999999999999877542
Q ss_pred -----CCC---CcccHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHh
Q 002169 833 -----PCS---SDVNIRELACLSE--GCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 833 -----~~~---~~~~l~~la~~t~--g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+.. .+..+..++.... ..+++++++++++++..++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 111 2234566666554 5678999999999888776553
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=177.40 Aligned_cols=185 Identities=25% Similarity=0.349 Sum_probs=138.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+++.. ....++||+||||||||++|+++|..+ +.+++.+++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 4678899999999988887432 335689999999999999999999986 778888888
Q ss_pred ccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 363 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 363 ~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
. ..+.|+.+..++.+|+.+....|.||||| . .....+.|+..| ..+.+.+|++||..+
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L----~~g~v~vI~at~~~e 302 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL----ARGELQCIGATTLDE 302 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECCTTT
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh----cCCCEEEEecCCHHH
Confidence 7 67788888899999999988889999999 0 011122233333 356899999999987
Q ss_pred -----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcCCCc-----HHHHHHHHH
Q 002169 443 -----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGFV-----GADLAALCN 508 (957)
Q Consensus 443 -----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~g~~-----gaDi~~l~~ 508 (957)
.++++++| ||.. |.|+.|+.+++.+|++.++.. .+..+++..+..++..+++|. +.....++.
T Consensus 303 ~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 303 YRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp THHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHH
Confidence 68999999 9975 999999999999999988776 566788999999988876655 446777887
Q ss_pred HHHHHH
Q 002169 509 EAALVC 514 (957)
Q Consensus 509 ~A~~~a 514 (957)
+|+..+
T Consensus 380 ~a~~~~ 385 (468)
T 3pxg_A 380 EAGSKV 385 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=154.10 Aligned_cols=158 Identities=25% Similarity=0.364 Sum_probs=117.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+.+. ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 457789999998888877732 1346789999999999999999999886 678899998
Q ss_pred cccc--ccccchhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 363 PEVV--SQNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 363 ~~l~--~~~~ge~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
.++. ..+.++....++.+++.+. ...+.||+|||+|.+.+.+...... .+...|...+ ...++.+|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~----~~~~~~~i~~~~ 159 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARGELHCVGATT 159 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH----HTTSCCEEEEEC
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhh----ccCCeEEEEeCC
Confidence 8776 3455677778888888664 3458899999999997654221111 1122233333 345678899998
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHH
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEIL 472 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il 472 (957)
.++ .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 160 ~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 876 68899999 998 5999999999998875
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=164.48 Aligned_cols=220 Identities=19% Similarity=0.266 Sum_probs=146.5
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh------------------hhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL------------------SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~------------------~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.++|++.+++.|...+.....+... ..-...++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999887543322110 0012245678999999999999999999999999999
Q ss_pred EEeccccc-ccccchh-HHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCc---hHHHHHHHHHHHHhhccc--
Q 002169 359 TVNGPEVV-SQNYGES-EQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGE---ELSQRMVATLLNLMDGVC-- 427 (957)
Q Consensus 359 ~i~~~~l~-~~~~ge~-e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~---~~~~~i~~~Ll~~ld~l~-- 427 (957)
.+++..+. ..+.|+. +..+..++..+. ...++||||||+|.+...+..... .....+...|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444543 445556665432 235789999999999876432211 111237788888888531
Q ss_pred -----------------cCCCeEEEEecCCCCC------------------------------------------chhhh
Q 002169 428 -----------------RTDGVLVIAATNRPDS------------------------------------------IEPAL 448 (957)
Q Consensus 428 -----------------~~~~v~vI~ttN~~~~------------------------------------------ld~al 448 (957)
...++++|+++|. +. +.|.+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp ---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1255688888772 22 34555
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHH----H-------H--cCCCCCCChHHHHHHHHHcC--CCcHHHHHHHHHHHHHH
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHA----L-------L--SGMEHSLLDSEVEYLSMATH--GFVGADLAALCNEAALV 513 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~----~-------l--~~~~~~l~~~~l~~La~~t~--g~~gaDi~~l~~~A~~~ 513 (957)
.+ ||+..+.|+.++.++..+|+.. + + ......+++..++.++.... ....+.+..+++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 55 8878899999999999998862 1 1 12345578889999988754 45678999999988887
Q ss_pred HHHHhc
Q 002169 514 CLRRYS 519 (957)
Q Consensus 514 a~rr~~ 519 (957)
++.+..
T Consensus 339 ~~~~~~ 344 (376)
T 1um8_A 339 IMFDLP 344 (376)
T ss_dssp HHHTGG
T ss_pred HHhhcc
Confidence 776543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=170.72 Aligned_cols=175 Identities=12% Similarity=0.184 Sum_probs=129.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
+.+++|+||||||||+||+++++.+ +..++.+++.++...+.+.........|.......++||||||+|.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 78899999988755443332222122333333336889999999998642
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
+ .....|+..++.+...+..+||++.+.+.. +++++++ ||. ..+.++.|+.++|.+|++..+..
T Consensus 210 ~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp H---------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 223456666665544455555555555554 7889988 886 67899999999999999998887
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
.+..+++..++.++..+.| +.+++..+++.+...+.
T Consensus 279 ~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 7777888889999998875 67888888888766654
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=165.04 Aligned_cols=176 Identities=10% Similarity=0.133 Sum_probs=126.8
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeCCCcccc----------c------ccchHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGPELFSK----------W------VGESEKAVRS 730 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~~~l~~~----------~------vg~~~~~ir~ 730 (957)
...+.+++|+||||||||++++++++++ ...++.++|..+.+. . .+.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3467889999999999999999999987 356889998775432 1 2335667788
Q ss_pred HHHHH--HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC----ChhhhCC
Q 002169 731 LFAKA--RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI----DPALLRP 804 (957)
Q Consensus 731 ~f~~A--~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i----d~aLlr~ 804 (957)
.|..+ ....++|+||||+|.+. ...++..++.... ....++.||+++|..+.. ++++.+
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~------------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL------------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC------------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHHhhhccCCceEEEEecHHHhh------------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 88875 35668899999999985 1234444544332 235579999999998764 444555
Q ss_pred CCcc-eecccCCCCHHHHHHHHHHHHhcCCC------------------------------------CCcccHHHHHHH-
Q 002169 805 GRFD-RLLYVGPPNETDREEIFRIHLRKIPC------------------------------------SSDVNIRELACL- 846 (957)
Q Consensus 805 gRfd-~~i~~~~P~~~er~~Il~~~l~~~~~------------------------------------~~~~~l~~la~~- 846 (957)
||. +.|.|++++.++..+|++..+....- ..+..++.+|+.
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v 265 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV 265 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 786 68999999999999999998876421 122235555653
Q ss_pred --ccCCcHHHHHHHHHHHHHHHHHH
Q 002169 847 --SEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 847 --t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
..| ..|..-++|+.|+..|-.+
T Consensus 266 A~~~G-D~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 266 ANVSG-STEKAFKICEAAVEISKKD 289 (318)
T ss_dssp HHHHC-SHHHHHHHHHHHHHHHHHH
T ss_pred HhhCC-hHHHHHHHHHHHHHHHHHH
Confidence 455 6777788899999888765
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=161.70 Aligned_cols=207 Identities=18% Similarity=0.242 Sum_probs=149.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc---
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN--- 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~--- 369 (957)
+++.|.+.+++.+...+...... +. -.-.+..+++|+||||||||++|+++|+.+ +.+++.++|..+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~--~~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG--LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT--CS-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC--CC-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 35789999999999887554211 00 011234589999999999999999999987 4568999988764431
Q ss_pred --c-------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc---------CCC
Q 002169 370 --Y-------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR---------TDG 431 (957)
Q Consensus 370 --~-------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~---------~~~ 431 (957)
. |... ...+.+.......+||||||+|.+. ..+...|+..|+...- ..+
T Consensus 94 ~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 0 1000 0122222333345899999999883 2456778888876321 136
Q ss_pred eEEEEecCC--------------------------CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC-------
Q 002169 432 VLVIAATNR--------------------------PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG------- 478 (957)
Q Consensus 432 v~vI~ttN~--------------------------~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~------- 478 (957)
+++|+|||. ...+++++.+ ||+..+.+.+|+.+++.+|++.++..
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 789999998 4466778887 99999999999999999999887654
Q ss_pred --CCCCCChHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 479 --MEHSLLDSEVEYLSMATH--GFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 479 --~~~~l~~~~l~~La~~t~--g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
....+++..++.++.... .+..++|..+++.+...++.+...
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 245578889999998765 678899999999988877766543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-14 Score=158.46 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=160.4
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCC--cceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCC
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT--GILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPE 715 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~--giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~ 715 (957)
....++++|.++..+.+.+++..... + ..+. .++|+||||||||++++++++.+ +..++.+++..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 33457899999999999888753211 1 2334 79999999999999999999988 57889999765
Q ss_pred cccc----------------cccchHHHH-HHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh
Q 002169 716 LFSK----------------WVGESEKAV-RSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777 (957)
Q Consensus 716 l~~~----------------~vg~~~~~i-r~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld 777 (957)
.... ..+.....+ ..+..... ...|.||+|||+|.+ ....+..|+..++
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQ 150 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHH
Confidence 4321 011112222 22222222 245889999999976 2345666777776
Q ss_pred cccc--CCcEEEEEecCCC---CCCChhhhCCCCcce-ecccCCCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHc-
Q 002169 778 GLHQ--RVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLS- 847 (957)
Q Consensus 778 ~~~~--~~~v~VI~aTN~~---~~id~aLlr~gRfd~-~i~~~~P~~~er~~Il~~~l~~---~~~~~~~~l~~la~~t- 847 (957)
.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. .....+..+..++..+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 5432 1488999999988 678888888 8865 7999999999999999988764 1222344577788888
Q ss_pred --------cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 848 --------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 848 --------~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.| +.+.+.++|+.|+..|..+. ...|+.+++..++......
T Consensus 229 ~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 229 AQTPLDTNRG-DARLAIDILYRSAYAAQQNG--RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp BSSTTCTTSC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHSCC
T ss_pred hcccCCCCCC-cHHHHHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHhhh
Confidence 45 67889999999988887654 5679999999998887655
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-15 Score=161.41 Aligned_cols=209 Identities=20% Similarity=0.204 Sum_probs=146.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~ 713 (957)
...+..|++++|++++++.+.+.+.. ....+++|+||||||||++|+++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34567899999999999988877642 122349999999999999999999986 346888888
Q ss_pred CCcccccccchHHHHHHHHHHH-H-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 714 PELFSKWVGESEKAVRSLFAKA-R-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A-~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
++..+. ......+....... . ...+.||+|||+|.+.. ...+.|+..++.. ..++.+|++|
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~~--~~~~~~i~~~ 139 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEMY--SKSCRFILSC 139 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-------------HHHHTTGGGTSSS--SSSEEEEEEE
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-------------HHHHHHHHHHHhc--CCCCeEEEEe
Confidence 764321 11111122111010 1 24578999999997732 3345566666642 3578899999
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
|.++.+.+++.+ ||. .+.+++|+.+++.++++..+.+.+.. .+..+..+++.+.| +.+.+.++++.++..
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~----- 210 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI----- 210 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-----
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----
Confidence 999999999999 885 89999999999999999988876654 23346677777776 556666666554421
Q ss_pred cCCCCCCHHHHHHHHHhh
Q 002169 871 LDASRITMQHLKTAIRHV 888 (957)
Q Consensus 871 ~~~~~It~~d~~~al~~~ 888 (957)
...|+.+++...+...
T Consensus 211 --~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 211 --GEVVDADTIYQITATA 226 (319)
T ss_dssp --SSCBCHHHHHHHTTCC
T ss_pred --CCCCCHHHHHHHHCCC
Confidence 2458888887766543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=161.99 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=156.8
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh------CCcEEEEeCCC
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPE 715 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------~~~~i~v~~~~ 715 (957)
....++++|.++..+.+.+.+..... ...+..++|+||||||||++++++++.+ +.+++.+++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34458899999999988887653211 2346679999999999999999999988 88899988643
Q ss_pred cccc----------------cccchHHH-HHHHHHHHHhC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh
Q 002169 716 LFSK----------------WVGESEKA-VRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777 (957)
Q Consensus 716 l~~~----------------~vg~~~~~-ir~~f~~A~~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld 777 (957)
.... ..+..... ...++...... .|+||+|||++.+..... ..++..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchh
Confidence 2110 11222222 34444444443 389999999999864321 234556666665
Q ss_pred ccccCCcEEEEEecCCC---CCCChhhhCCCCcc-eecccCCCCHHHHHHHHHHHHhcCC---CCCcccHHHHHHHcc--
Q 002169 778 GLHQRVNVTVIAATNRP---DKIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKIP---CSSDVNIRELACLSE-- 848 (957)
Q Consensus 778 ~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd-~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~l~~la~~t~-- 848 (957)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++..+.... ...+..+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 44 34578899999987 457888888 775 4899999999999999998776321 122334566777776
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 849 -GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 -g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
| +.+.+.++|+.|+..|..+. ...|+.+|+..++....
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~--~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMK--DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcC--CCccCHHHHHHHHHHHh
Confidence 6 67788889999888776543 56799999998887654
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=160.85 Aligned_cols=200 Identities=10% Similarity=0.153 Sum_probs=142.9
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEecccccc
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEVVS 367 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~l~~ 367 (957)
|.|.+++.+.|...+...+. -..+.+++|+||||||||++++++++++ +..++++||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 67888888888887655532 2468899999999999999999999988 35688999977544
Q ss_pred cc----------------cchhHHHHHHHHHHH--hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC
Q 002169 368 QN----------------YGESEQALHEVFDSA--SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 429 (957)
Q Consensus 368 ~~----------------~ge~e~~i~~vf~~a--~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~ 429 (957)
.+ .++....++.+|+.. ....+.|++|||+|.+. . +.++..|+++... ..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~~--~~ 161 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWISS--KN 161 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHHC--SS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhcccc--cC
Confidence 31 234556778888875 34567899999999997 1 2344445544322 45
Q ss_pred CCeEEEEecCCCCC----chhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcCCCC-----------------------
Q 002169 430 DGVLVIAATNRPDS----IEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSGMEH----------------------- 481 (957)
Q Consensus 430 ~~v~vI~ttN~~~~----ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~~~~----------------------- 481 (957)
.++++|+++|..+. +++++++ ||. +.|.|++++.++..+|++..+.....
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 67899999999875 4455566 776 57999999999999999988865321
Q ss_pred ------------CCChHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 482 ------------SLLDSEVEYLSMA---THGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 482 ------------~l~~~~l~~La~~---t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.+++..++.+|+. ..|- .+-.-.+|+.|+..|-++...
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD-~R~Al~ilr~A~~~ae~e~~~ 292 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSGS-TEKAFKICEAAVEISKKDFVR 292 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888884 3332 233445777787777665543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-14 Score=145.77 Aligned_cols=187 Identities=19% Similarity=0.199 Sum_probs=134.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVS 367 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~ 367 (957)
..++++.|.+..++.+.+.+... ...+++|+||||||||++++++++.+ ...++.+++.+..+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 45678999999999998886422 23359999999999999999999875 35678888765432
Q ss_pred cccchhHHHHHHHHHH--HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 368 QNYGESEQALHEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
. ......+...... .....+.+|+|||+|.+.+ .....|+..++.. ..++.+|+++|.++.++
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 82 I--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYVSRII 146 (226)
T ss_dssp H--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSC
T ss_pred h--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCChhhcC
Confidence 1 1111122222111 0124588999999998843 2244566666653 45788999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
+++.+ ||. .+.++.|+.++..++++..+...+..+++..++.++..+.|. .+.+..+++.+
T Consensus 147 ~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~l~~~l~~~ 207 (226)
T 2chg_A 147 EPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGA 207 (226)
T ss_dssp HHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 99998 887 799999999999999999887766677888899999887663 44444555444
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=155.89 Aligned_cols=205 Identities=15% Similarity=0.157 Sum_probs=150.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~ 713 (957)
...+..|++++|++++++.+.+++.. -..+ +++|+||+|||||++|+++|+.+ +.+++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 34566789999999999999888752 1223 39999999999999999999986 356888887
Q ss_pred CCcccccccchHHHHHHHHHHHH-------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++.. ....++.++.... ...+.||+|||+|.+.. ...+.|+..++.. ..++.
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~~--~~~~~ 139 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------GAQQALRRTMELY--SNSTR 139 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-------------HHHHTTHHHHHHT--TTTEE
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-------------HHHHHHHHHHhcc--CCCce
Confidence 6632 2345566666554 33478999999997732 3345567777643 34688
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
+|++||.++.+.+++.+ |+. .+.+++|+.++..++++..+.+.+.. .+..+..++..+.| +.+.+.++++.++..
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 88999999999999998 775 89999999999999999888765543 23456778888877 566666666655421
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhh
Q 002169 866 AIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 866 a~~~~~~~~~It~~d~~~al~~~ 888 (957)
...|+.+++.+++...
T Consensus 216 -------~~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 216 -------HGLVNADNVFKIVDSP 231 (323)
T ss_dssp -------HSSBCHHHHHHHHTSC
T ss_pred -------CCCcCHHHHHHHHCCC
Confidence 1357888887776543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-14 Score=158.95 Aligned_cols=203 Identities=19% Similarity=0.190 Sum_probs=141.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEeccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVV 366 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~ 366 (957)
+++.|.+++++.+.+.+... +....+.+++|+||||||||++++++++.+ +..++.++|....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 57899999999988875332 112457789999999999999999999988 7888999987643
Q ss_pred ccc----------------cch-hHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc
Q 002169 367 SQN----------------YGE-SEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 428 (957)
Q Consensus 367 ~~~----------------~ge-~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~ 428 (957)
+.+ .|. .......+++.+.. ..|.||||||+|.+...+ .....+..++..++....
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELGD 164 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC--
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhcCC
Confidence 211 111 22234444444433 347899999999986432 123444455555543321
Q ss_pred CCCeEEEEecCCC---CCchhhhhCCCCcce-eeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcC---CCc
Q 002169 429 TDGVLVIAATNRP---DSIEPALRRPGRLDR-EIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATH---GFV 499 (957)
Q Consensus 429 ~~~v~vI~ttN~~---~~ld~al~r~gRfd~-~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~---g~~ 499 (957)
..++.+|++||.+ +.+++.+++ ||.. .+.++.|+.+++.+|++..+.. ....+++..++.++..+. | .
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~ 241 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-D 241 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-C
T ss_pred CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-C
Confidence 4578999999987 678899988 8865 7999999999999999988764 344567778888888876 5 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002169 500 GADLAALCNEAALVCL 515 (957)
Q Consensus 500 gaDi~~l~~~A~~~a~ 515 (957)
.+.+..+++.|...+.
T Consensus 242 ~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666677777765543
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=168.23 Aligned_cols=257 Identities=17% Similarity=0.190 Sum_probs=148.8
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc--
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW-- 720 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~-- 720 (957)
++++|.+...+.+.+.+... ...+.++||+||||||||++|++|+..+ +.+|+.++++.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35789988888888777532 2346789999999999999999999975 5789999998763311
Q ss_pred ---cc----chHH---HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------c
Q 002169 721 ---VG----ESEK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 781 (957)
Q Consensus 721 ---vg----~~~~---~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~ 781 (957)
.| .+.. .....|+.|.. .+||||||+.+. ...+..|+..|+... .
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L~LDEi~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADG---GTLFLDEIGDIS-------------PLMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTT---SEEEEESCTTCC-------------HHHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcCC---CEEEEeccccCC-------------HHHHHHHHHHHhcCEeeecCCcccc
Confidence 11 1110 12345666654 499999999773 345667888887542 1
Q ss_pred CCcEEEEEecCCC-------CCCChhhhCCCCcc-eecccCCCC--HHHHHHHHHHHHh----cCCCC----CcccHHHH
Q 002169 782 RVNVTVIAATNRP-------DKIDPALLRPGRFD-RLLYVGPPN--ETDREEIFRIHLR----KIPCS----SDVNIREL 843 (957)
Q Consensus 782 ~~~v~VI~aTN~~-------~~id~aLlr~gRfd-~~i~~~~P~--~~er~~Il~~~l~----~~~~~----~~~~l~~l 843 (957)
..++.||+|||.. ..+++.|.. ||. ..|.+|+.. .++...+++.++. +.+.. .+..+..+
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 2468999999976 124555555 654 123444444 2344445555443 22221 12234555
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHH-HHHHHHHHhcCchhhhhccccccc
Q 002169 844 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKE-LSAKFQRLVHSNAEADESGYQLRP 922 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~-~~~~~~~~v~~~~~~~~~~~~~~~ 922 (957)
......-+.++++++++.|+..+- ...|+.+|+...+....+.....+.. ..+.+++.++........++..+.
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~l~~~~~~~~e~~~i~~~l~~~~gn~~~a 287 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVVLLT-----GEYISERELPLAIAATPIKTEYSGEIQPLVDVEKEVILAALEKTGGNKTEA 287 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHCC-----SSSBCGGGSCGGGC-------CCSSCCCHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCC-----CCcccHHhhhhhhccCCCccCCCcchhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 555522368999999998886542 34566666543321100000000000 122344444444444444445555
Q ss_pred chhhh---hhhhhccCC
Q 002169 923 SKSIG---SNMWTLIKS 936 (957)
Q Consensus 923 ~~~~g---~~L~~~~k~ 936 (957)
++..| .+||.++|.
T Consensus 288 A~~Lgi~r~tl~~kl~~ 304 (304)
T 1ojl_A 288 ARQLGITRKTLLAKLSR 304 (304)
T ss_dssp HHHHTSCHHHHHHHTCC
T ss_pred HHHHCcCHHHHHHHHhC
Confidence 55554 779998763
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-14 Score=145.63 Aligned_cols=185 Identities=20% Similarity=0.279 Sum_probs=138.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 356 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~---------------- 356 (957)
..++++.|.+.+++.|.+.+... ..+..++|+||||||||++++++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 35678999999999998886432 224579999999999999999999877432
Q ss_pred --------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 357 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 357 --------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
++.+++.. ......++.+++.+. ...+.+|+|||+|.+. ......|+..++
T Consensus 89 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~l~ 151 (250)
T 1njg_A 89 IEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKTLE 151 (250)
T ss_dssp HHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHHHH
T ss_pred HhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHHHh
Confidence 22222211 122344566666543 2347899999999873 234456777776
Q ss_pred ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHH
Q 002169 425 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~ 504 (957)
.. ..++.+|++||.++.+++++.+ |+ ..+.++.++.++..++++.++...+..+++..++.++..+.| ..+.+.
T Consensus 152 ~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~ 225 (250)
T 1njg_A 152 EP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDAL 225 (250)
T ss_dssp SC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHH
T ss_pred cC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 53 4578999999999889999988 65 568999999999999999988877777788889999999977 677888
Q ss_pred HHHHHHH
Q 002169 505 ALCNEAA 511 (957)
Q Consensus 505 ~l~~~A~ 511 (957)
.+++.|.
T Consensus 226 ~~~~~~~ 232 (250)
T 1njg_A 226 SLTDQAI 232 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887763
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-14 Score=159.23 Aligned_cols=206 Identities=19% Similarity=0.242 Sum_probs=150.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+..|++++|++++++.+...+.. -+.+..++|+||+|||||++|+++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 34566899999999999999888742 123456899999999999999999998754
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++..- .....++.+++.+.. ..+.||+|||+|.+. ....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~ 137 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFN 137 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------HHHHH
T ss_pred HHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------HHHHH
Confidence 2333333210 112345666666542 346899999999762 34566
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..++.. ..++++|++|+.+..+.+++.+ |+ ..+.+++|+.++..++++..+.+.+... +..+..+++.+.|
T Consensus 138 ~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 138 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 788888753 4578899999999999999998 77 6899999999999999999887665542 3346778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.++++.+...+ ...|+.+++..++..
T Consensus 213 -~~r~~~~~l~~~~~~~------~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 213 -SLRDALSLTDQAIASG------DGQVSTQAVSAMLGT 243 (373)
T ss_dssp -CHHHHHHHHHHHHHHT------TTCBCHHHHHHHTTC
T ss_pred -CHHHHHHHHHHHHHhc------CCcccHHHHHHHhCC
Confidence 7888888888775432 245777777666543
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=158.86 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=132.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+++++.|.++.++.|++++.. -..+..+|++||||||||++|+++|+.++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 45788999999999999988652 13355678889999999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHhcc-----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 372 ESEQALHEVFDSASQS-----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~-----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
...++..+...... .+.||||||+|.+.. ......|+..++.. ..++.+|++||.+..+++
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~ 151 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGIIK 151 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCT
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCH
Confidence 23444444433222 578999999998841 23445677777764 346789999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHH-------HcCCCCCCCh-HHHHHHHHHcCCCcHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHAL-------LSGMEHSLLD-SEVEYLSMATHGFVGA 501 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~-------l~~~~~~l~~-~~l~~La~~t~g~~ga 501 (957)
++++ ||. .+.|+.|+.+++.+|++.+ +...+..+++ ..++.++..+.|-...
T Consensus 152 ~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 152 PLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp THHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred HHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 9999 885 5999999999976665443 3334556667 8899999987765433
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=163.13 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=136.3
Q ss_pred cccccccCCcHHHH---HHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEY---AILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~---~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
..+++++.|.+..+ +.|+..+... ...++||+||||||||++|+++|+.++.+++.+++...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 45788999999998 6676665332 12579999999999999999999999999999987442
Q ss_pred ccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec--CCCC
Q 002169 369 NYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT--NRPD 442 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt--N~~~ 442 (957)
....++.+|+.+. ...+.||||||+|.+.... ...|+..++. +.+++|++| |...
T Consensus 87 ----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 87 ----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTENPSF 147 (447)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGGG
T ss_pred ----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCCCccc
Confidence 2234555555544 3467899999999985432 2346777764 457788777 4455
Q ss_pred CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC-------CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG-------MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~-------~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+++++++ |+. .+.++.|+.+++.++++..+.. ....+++..++.++..+.| ..+.+.++++.+...
T Consensus 148 ~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 148 ELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp SSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred ccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 88999999 775 5889999999999999999876 4456788999999999766 456666666666543
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-14 Score=155.19 Aligned_cols=205 Identities=23% Similarity=0.290 Sum_probs=145.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+.+|++++|++++++.+..++.. + ...+++|+||||||||++|+++|+.+. ..++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 35667899999999999999887752 1 223599999999999999999999863 35788887
Q ss_pred CCcccccccchHHHHHHHHHHH-H-----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKA-R-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A-~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++..+ ...++..+... . ...+.||+|||+|.+. ....+.|+..++.. ..++.+
T Consensus 85 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~ 143 (327)
T 1iqp_A 85 SDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALT-------------QDAQQALRRTMEMF--SSNVRF 143 (327)
T ss_dssp TCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHT--TTTEEE
T ss_pred cccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-------------HHHHHHHHHHHHhc--CCCCeE
Confidence 65321 11222222221 1 1457899999999763 33456677777753 347888
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.++.+.+++.+ ||. .+.|++|+.++..++++..+.+.+.. .+..+..++..+.| +.+.+.++++.+...
T Consensus 144 i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~- 218 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL- 218 (327)
T ss_dssp EEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-
T ss_pred EEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc-
Confidence 9999999999999998 886 78999999999999999888766543 23456778888877 666666776654421
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 002169 867 IEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~ 888 (957)
...|+.+++...+...
T Consensus 219 ------~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 219 ------DKKITDENVFMVASRA 234 (327)
T ss_dssp ------CSEECHHHHHHHTTCC
T ss_pred ------CCCCCHHHHHHHHCCC
Confidence 2346666666555443
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=169.16 Aligned_cols=193 Identities=18% Similarity=0.277 Sum_probs=132.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhh--hhhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVK--STLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~--~~~~~l~i~---~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
+.++++++|.+.+++.|++++...... ..+...+.. +++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 457889999999999999998653222 233333433 568999999999999999999999999999999998876
Q ss_pred ccccchhHH-------HHHHHHHHH-----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 367 SQNYGESEQ-------ALHEVFDSA-----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 367 ~~~~ge~e~-------~i~~vf~~a-----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
..+..+... .+..+|+.+ ....+.||||||+|.+..... ..+..|+.+++.. ...+++
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~--~~~iIl 184 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT--STPLIL 184 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC--SSCEEE
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc--CCCEEE
Confidence 543211100 012223322 224578999999999975432 1245566666542 223333
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
|+++.....+. .++ |+...+.|+.|+.+++.+++...+...+..+++..++.++..+.|-
T Consensus 185 i~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gd 244 (516)
T 1sxj_A 185 ICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD 244 (516)
T ss_dssp EESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTC
T ss_pred EEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 33332233443 344 3445799999999999999998887766777888899999988663
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-14 Score=156.09 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=135.7
Q ss_pred hcCCccccccCChHHHHHHHHHHH-hchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAV-EWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i-~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
...+.+|++++|++++++.+..++ .. .+.+. ++|+|||||||||+++++|+++..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 345678999999999998887766 21 12233 999999999999999999996421
Q ss_pred ------------------cEEEEeCCCcccccccchHHHHHHHHHHHH--------------hCCCeEEEEeCCchhhhh
Q 002169 707 ------------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR--------------ANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 707 ------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~--------------~~~p~ILfiDEid~l~~~ 754 (957)
.++.++..+.. ......++..++.+. ...|.||+|||++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L--- 146 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL--- 146 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---
Confidence 12223222110 001113455555442 236789999999975
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC 834 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~ 834 (957)
.....+.++..|+.. ..++.+|++||.++.+.+++.+ || ..+.|++|+.+++.++++..+.+.++
T Consensus 147 ----------~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 147 ----------TKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp ----------CHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ----------CHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 234456777777754 3368899999999999999998 88 78999999999999999988876554
Q ss_pred C-C-cccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 835 S-S-DVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 835 ~-~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
. . +..+..+++.+.| +.+++.++++.++..+
T Consensus 212 ~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 212 QLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp EECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 3 2 4457888888887 7777777777666543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-14 Score=146.14 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=133.5
Q ss_pred ccccccCC---cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEeccccc
Q 002169 293 QDISKLGG---LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVV 366 (957)
Q Consensus 293 ~~~~~i~G---l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~ 366 (957)
.+|+++.| ....++.++.++.. ..+.+++|+||||||||++|++++..+. ..++.+++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 34556655 34555555555321 2467899999999999999999998764 678889888776
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCC---
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPD--- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~--- 442 (957)
..... .++. ...+.+|+|||+|.+.... .....|+..++.....+.+.+|++++ .++
T Consensus 93 ~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 93 SISTA--------LLEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GSCGG--------GGTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred HHHHH--------HHHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 54321 1111 1347899999999885321 12344666666554444443444554 443
Q ss_pred CchhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 443 SIEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 443 ~ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
.+++++.+ ||. ..+.++.|+.+++.++++.++...+..+++..++.++..+.| ..+++..+++.+...+..
T Consensus 154 ~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 154 FVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 45577887 775 779999999999999999998877778889999999998866 678888888887766643
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=168.06 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=140.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCC-----Cccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGP-----ELFS 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~-----~l~~ 718 (957)
..++|++++++.+..++.. ..++||+||||||||++|++||..++ .+|..+.+. ++++
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 4588999999887766532 35799999999999999999999884 356655553 2222
Q ss_pred ccccchHHHHHHHHHHHHhC---CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEE
Q 002169 719 KWVGESEKAVRSLFAKARAN---APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTV 787 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~---~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~V 787 (957)
.+.+..... ...|..+..+ .++|||||||+.+ ...+.+.|+..|+... .....++
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 222211111 2223322222 4679999999854 4667788888886321 1112246
Q ss_pred EEecCCCCC---CChhhhCCCCcceecccCCCCH-HHHHHHHHHHHhcC-------------------------CCCCcc
Q 002169 788 IAATNRPDK---IDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRKI-------------------------PCSSDV 838 (957)
Q Consensus 788 I~aTN~~~~---id~aLlr~gRfd~~i~~~~P~~-~er~~Il~~~l~~~-------------------------~~~~~~ 838 (957)
|+|||.+.. ..+++++ ||...+++++|+. +++..|++.+.... .+. +.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 788886432 4469999 9988899999987 67888887654211 111 11
Q ss_pred cHHHHHHHc---------cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 002169 839 NIRELACLS---------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQ 904 (957)
Q Consensus 839 ~l~~la~~t---------~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~ 904 (957)
..+.++... .|.|.|.+..+++.|...|..+. ...|+.+|+. .+..+..........+...++
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g--r~~Vt~eDv~-~a~~vL~hr~~~~~~~~~~i~ 301 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG--RSAVAPVDLI-LLKDCLWYDAQSLNLIQQQID 301 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT--CSBCCGGGGG-GGGGTSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC--CccccchHHH-HHHhhhhcCchHhHHHHHHHH
Confidence 123333333 47899999999998877777665 5678888888 555555443333333333333
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-15 Score=148.16 Aligned_cols=152 Identities=22% Similarity=0.356 Sum_probs=111.3
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v 711 (957)
...|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45789999999988888776632 345679999999999999999999987 6788888
Q ss_pred eCCCcc--cccccchHHHHHHHHHHHHhC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 712 KGPELF--SKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 712 ~~~~l~--~~~vg~~~~~ir~~f~~A~~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
++..+. ..+.+.....++.++..+... .|.+|||||+|.+...+...... ..+.+.+...++ ..++.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLA----RGELRCI 156 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHH----TTCSCEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHh----cCCeeEE
Confidence 766554 234556666778888777665 68899999999986544311111 122333333443 3468899
Q ss_pred EecCCCC-----CCChhhhCCCCcceecccCCCC
Q 002169 789 AATNRPD-----KIDPALLRPGRFDRLLYVGPPN 817 (957)
Q Consensus 789 ~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~ 817 (957)
++||.++ .+++++.+ ||+ .+++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9999775 68999999 998 48898885
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=144.80 Aligned_cols=151 Identities=23% Similarity=0.342 Sum_probs=111.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+.+++.+.+.+. -..+.+++|+||||||||++|++++..+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHh------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 457789999998888877641 1346789999999999999999999887 778888888
Q ss_pred ccccc--cccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 363 PEVVS--QNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 363 ~~l~~--~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
..+.. .+.+.....+..+++.+... .|.+|||||+|.+.+.+..... ...+...|...++ ..++.+|+++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~~~ 160 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGATT 160 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEEEC
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEecC
Confidence 77653 34566677788888777655 6789999999999755431110 0112233333333 46788999999
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCC
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPS 464 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~ 464 (957)
.++ .+++++++ ||+. +.++.|+
T Consensus 161 ~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred HHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 765 68899999 9985 8888885
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=154.04 Aligned_cols=195 Identities=18% Similarity=0.148 Sum_probs=137.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----------CCcEEEEeccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----------GVNLFTVNGPE 364 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----------~~~~i~i~~~~ 364 (957)
+++.|.+++++.+.+.+..... -..+.+++|+||||||||++|+++++++ +..++.++|.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 5789999999999988754422 1346689999999999999999999987 88999999876
Q ss_pred cc-ccc-----------------cch-hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH-HHHHHHHhh
Q 002169 365 VV-SQN-----------------YGE-SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM-VATLLNLMD 424 (957)
Q Consensus 365 l~-~~~-----------------~ge-~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i-~~~Ll~~ld 424 (957)
.. ..+ .+. ....+..+++.+.... .||+|||+|.+..... ... +..|+...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~-------~~~~l~~l~~~~- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG-------GDIVLYQLLRSD- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT-------SHHHHHHHHTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC-------CceeHHHHhcCC-
Confidence 43 110 011 1233444444444333 3999999999864321 111 22232222
Q ss_pred ccccCCCeEEEEecCCC---CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcCCC-
Q 002169 425 GVCRTDGVLVIAATNRP---DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATHGF- 498 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~---~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~g~- 498 (957)
.++.+|++||.+ +.+++++++ ||...+.++.|+.++..++++..+.. ....+++..++.++..+.+.
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEH 235 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTC
T ss_pred -----cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhcc
Confidence 678999999987 678899988 88778999999999999999998763 23456788888898887622
Q ss_pred -cHHHHHHHHHHHHHHH
Q 002169 499 -VGADLAALCNEAALVC 514 (957)
Q Consensus 499 -~gaDi~~l~~~A~~~a 514 (957)
..+.+..+++.|...+
T Consensus 236 G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 236 GDARKAVNLLFRAAQLA 252 (384)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 2345556666665443
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-13 Score=148.41 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=131.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc------cccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP------EVVS 367 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~------~l~~ 367 (957)
.++++.|.+..++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++. ++.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 346789999888777665321 35899999999999999999999999999988873 2222
Q ss_pred cccchhHHHHHHHHHHHhccC---CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEE
Q 002169 368 QNYGESEQALHEVFDSASQSA---PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVI 435 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~---p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI 435 (957)
........ ..| ..... .+||||||+|.+. ......|+..|+.. ....++++|
T Consensus 91 ~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTT---TEE--EEEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCC---Cce--EeccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 21100000 000 00111 3699999999873 23455677777642 123467888
Q ss_pred EecCCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC----------------------CCCCChHHH
Q 002169 436 AATNRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM----------------------EHSLLDSEV 488 (957)
Q Consensus 436 ~ttN~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~----------------------~~~l~~~~l 488 (957)
+|+|+.+ .+++++++ ||+..+.++.|+.+++.+|++..+... ...+++..+
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 232 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLE 232 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHH
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHH
Confidence 8888654 38999999 998889999999999999999887653 334566666
Q ss_pred HHHHHHc-------------------CCCcHHHHHHHHHHHHHHHHHH
Q 002169 489 EYLSMAT-------------------HGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 489 ~~La~~t-------------------~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++... .|.+.+.+..+++.|...|.-+
T Consensus 233 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 233 KYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp HHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 6665432 2457788888887776655433
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=151.60 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=135.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC------CcEEEEecccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG------VNLFTVNGPEV 365 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~------~~~i~i~~~~l 365 (957)
+..++++.|.+++++.|...+.. ....+++|+||||||||++|+++|+.++ ..++.+++++.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 45678999999999888777421 1124599999999999999999998864 45788888764
Q ss_pred cccccchhHHHHHHHHHH------------HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeE
Q 002169 366 VSQNYGESEQALHEVFDS------------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 433 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~ 433 (957)
.+. +.....+...... .....+.||||||+|.+.+ .....|+..|+.. ..+..
T Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~--~~~~~ 165 (353)
T 1sxj_D 101 RGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETY--SGVTR 165 (353)
T ss_dssp CCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--TTTEE
T ss_pred cch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhc--CCCce
Confidence 221 1111111111110 0112456999999998843 2345677777764 34567
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 512 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~ 512 (957)
+|+++|.++.+++++++ |+. .+.++.|+.++..++++..+...+..+++..++.++..+.|.. +.+.++++.+..
T Consensus 166 ~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~~~~ 240 (353)
T 1sxj_D 166 FCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL-RRGITLLQSASK 240 (353)
T ss_dssp EEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCH-HHHHHHHHHTHH
T ss_pred EEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 88899999999999998 875 6899999999999999998887777889999999999988753 444444444443
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=145.64 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=142.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+++++.|.+.+++.+...+...... + .++.+++|+||||||||||++++|++++.++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~------~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR------G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH------T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc------C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 35677888888888877766443211 1 34578999999999999999999999999887777655422
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~ 436 (957)
...+..++... ..+.|+||||++.+.+ .....|+..++... .-..+.+++
T Consensus 90 -~~~l~~~~~~~--~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 -QGDMAAILTSL--ERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -HHHHHHHHHHC--CTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -HHHHHHHHHHc--cCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 12233333322 2457999999998853 12223333343211 012467888
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
+++++..+++++++ ||...+.++.|+.+++.+|++.........+++..+..++..+.|.. +.+..+++.+...|..
T Consensus 156 at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 156 ATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHH
Confidence 99999999999999 99877899999999999999998877777788889999999988754 7777888877666544
Q ss_pred H
Q 002169 517 R 517 (957)
Q Consensus 517 r 517 (957)
+
T Consensus 233 ~ 233 (334)
T 1in4_A 233 V 233 (334)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=150.00 Aligned_cols=187 Identities=19% Similarity=0.210 Sum_probs=134.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~ 366 (957)
+..++++.|.+..++.|++.+.. ....+++|+||||||||++|+++++.+ +..++.+++++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 34678899999999888776421 122359999999999999999999986 3457888887653
Q ss_pred ccccchhHHHHHHHHHHH-h-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 367 SQNYGESEQALHEVFDSA-S-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a-~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+. ......+....... . ...+.||+|||+|.+.. .....|+..++.. ..++.+|++||.++.+
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 81 GI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYVSRI 145 (319)
T ss_dssp CT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESCGGGS
T ss_pred Ch--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCChhhc
Confidence 31 12222222222111 1 24478999999998842 2234466666552 4578899999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
.+++++ |+. .+.++.|+.+++.+++...+...+..+++..++.++..+.|.. +.+.++++.
T Consensus 146 ~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~ 206 (319)
T 2chq_A 146 IEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF-RKAINALQG 206 (319)
T ss_dssp CHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH-HHHHHHHHH
T ss_pred chHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 999998 775 6999999999999999999988888889999999998776643 333344433
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-13 Score=150.62 Aligned_cols=210 Identities=21% Similarity=0.224 Sum_probs=142.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+..|++++|++++++.+...+.. + +.+ +++|+||||||||++|+++|+.+. ..++.++.
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 45667899999999999988877752 1 222 499999999999999999999863 24677777
Q ss_pred CCcccccccchHHHHHHHHHHHHh------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++..+ ...++..+..... ..+.|++|||+|.+. ....+.|+..++.. ...+.+
T Consensus 85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~ 143 (340)
T 1sxj_C 85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-------------NAAQNALRRVIERY--TKNTRF 143 (340)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-------------HHHHHHHHHHHHHT--TTTEEE
T ss_pred ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-------------HHHHHHHHHHHhcC--CCCeEE
Confidence 65321 2344444443321 236899999999773 23456788888754 346778
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.+..+.+++.+ |+. .+.|++++.++..++++..+...++. .+.....++..+.| +.+++.++++.++..+
T Consensus 144 il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~ 219 (340)
T 1sxj_C 144 CVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATL 219 (340)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTT
T ss_pred EEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 8899999999999999 885 78898999999888888888544432 23346667777776 4444444444332211
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 002169 867 IEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~ 888 (957)
.. -+...|+.+++.+++...
T Consensus 220 ~~--~~~~~it~~~v~~~~~~~ 239 (340)
T 1sxj_C 220 DN--PDEDEISDDVIYECCGAP 239 (340)
T ss_dssp CS--SSCCCBCHHHHHHHTTCC
T ss_pred CC--cccccccHHHHHHHhCCC
Confidence 10 011258888887766543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=148.04 Aligned_cols=200 Identities=16% Similarity=0.201 Sum_probs=138.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEeccccccc-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEVVSQ- 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l------~~~~i~i~~~~l~~~- 368 (957)
+++.|.+++++.|.+.+..... -..+..++|+||||||||++++++++.+ +..++.++|......
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 5789999999998887533211 1456789999999999999999999988 888999997643211
Q ss_pred ---------------ccch-hHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 369 ---------------NYGE-SEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 369 ---------------~~ge-~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
..+. .......+++..... .|.||+|||++.+..... ...+..|+..++.+ ...+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~~~~ 163 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-NKSK 163 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-CC--
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-CCCe
Confidence 0111 222344444444433 389999999999865431 12445566666554 3457
Q ss_pred eEEEEecCCC---CCchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcC---CCcHHH
Q 002169 432 VLVIAATNRP---DSIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATH---GFVGAD 502 (957)
Q Consensus 432 v~vI~ttN~~---~~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~---g~~gaD 502 (957)
+.+|+++|.+ +.+++.+.+ ||. +.+.++.++.++..++++..+.. ....+++..++.++..+. |. .+.
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~-~r~ 240 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD-ARR 240 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC-HHH
T ss_pred EEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC-HHH
Confidence 8999999987 456777777 664 47999999999999999987653 134567888888888776 54 445
Q ss_pred HHHHHHHHHHHH
Q 002169 503 LAALCNEAALVC 514 (957)
Q Consensus 503 i~~l~~~A~~~a 514 (957)
+..+++.|...+
T Consensus 241 ~~~ll~~a~~~a 252 (386)
T 2qby_A 241 ALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555777765544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-13 Score=149.24 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=137.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 356 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--------------- 356 (957)
...++++.|.+.+++.|.+.+... ..+..++|+||+|||||++|+++|+.++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 346778999999999998886422 224578999999999999999999987542
Q ss_pred ---------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 357 ---------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 357 ---------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
++.+++..- .....++.+++.+. ...+.||+|||+|.+.. ...+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~~l 143 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (373)
T ss_dssp HHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHHHH
T ss_pred HHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHHHH
Confidence 233333210 01123455666554 23478999999998832 2345677777
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.. ..++++|++|+.++.+.+.+++ |+ ..+.++.|+.++..++++..+...+..+++..++.++..+.| ..+++
T Consensus 144 e~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~ 217 (373)
T 1jr3_A 144 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 217 (373)
T ss_dssp HSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHH
T ss_pred hcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHH
Confidence 763 4578999999998899999988 66 568999999999999999988777777788889999999877 55666
Q ss_pred HHHHHHHH
Q 002169 504 AALCNEAA 511 (957)
Q Consensus 504 ~~l~~~A~ 511 (957)
.++++.+.
T Consensus 218 ~~~l~~~~ 225 (373)
T 1jr3_A 218 LSLTDQAI 225 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=146.91 Aligned_cols=176 Identities=16% Similarity=0.217 Sum_probs=132.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~ 366 (957)
+..++++.|.+.+++.|.+.+... . ..+++|+||||+|||++|+++++.+ +..++.+++.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG-----------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC-----------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 345778999999999988885321 1 2249999999999999999999886 3457888876532
Q ss_pred ccccchhHHHHHHHHHHHh-------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 367 SQNYGESEQALHEVFDSAS-------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~-------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
+ ...++.+++... ...+.||+|||+|.+.. .....|+..++.. ..++.+|++||
T Consensus 85 ~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~il~~~ 145 (323)
T 1sxj_B 85 G------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELY--SNSTRFAFACN 145 (323)
T ss_dssp S------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHT--TTTEEEEEEES
T ss_pred C------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhcc--CCCceEEEEeC
Confidence 2 234445555433 23478999999998843 2234566777653 45788899999
Q ss_pred CCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 440 ~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.++.+.+++++ |+. .+.++.|+.++..++++..+...+..+++..++.++..+.|....
T Consensus 146 ~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 146 QSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHH
T ss_pred ChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 99999999998 664 699999999999999999887766677888999999988775443
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-13 Score=145.38 Aligned_cols=187 Identities=17% Similarity=0.211 Sum_probs=135.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
...|+++.|.+.+++.|..++... ...+++|+||||||||++|+++++.+. ..++.+++++..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 346788999999999998876432 223699999999999999999998863 347788876543
Q ss_pred ccccchhHHHHHHHHHHH-h-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 367 SQNYGESEQALHEVFDSA-S-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a-~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+. ......+....... . ...+.||+|||+|.+.+ .....|+..++.. ..++.+|+++|.++.+
T Consensus 89 ~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 89 GI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCNYSSKI 153 (327)
T ss_dssp HH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGGGS
T ss_pred ch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCCcccc
Confidence 21 11112222221111 1 14578999999998842 2345677777763 4568899999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
.+++++ |+. .+.++.++.++..++++..+...+..+++..++.++..+.|.. +.+.++++.
T Consensus 154 ~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~-r~~~~~l~~ 214 (327)
T 1iqp_A 154 IEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM-RRAINILQA 214 (327)
T ss_dssp CHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCH-HHHHHHHHH
Confidence 999988 775 6899999999999999999888887788999999999887643 333444443
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=150.36 Aligned_cols=202 Identities=17% Similarity=0.182 Sum_probs=127.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE----Eeccccc-
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT----VNGPEVV- 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~----i~~~~l~- 366 (957)
..+|+++.|.+..++.+...... ....++||+||||||||++|++++..++..... ++|....
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 87 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM 87 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG
T ss_pred CCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc
Confidence 45688899999876654332111 123469999999999999999999988631110 1111110
Q ss_pred --------------------ccccchhHHH------HHHHHHHHh---------ccCCeEEEEcCccccccCCcCCCchH
Q 002169 367 --------------------SQNYGESEQA------LHEVFDSAS---------QSAPAVVFIDELDAIAPARKDGGEEL 411 (957)
Q Consensus 367 --------------------~~~~ge~e~~------i~~vf~~a~---------~~~p~IL~IDEiD~l~~~~~~~~~~~ 411 (957)
....+.++.. +...+.... ...++||||||+|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--------- 158 (350)
T 1g8p_A 88 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------- 158 (350)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---------
T ss_pred ccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---------
Confidence 0001111111 111222210 11367999999998842
Q ss_pred HHHHHHHHHHHhhcc----c-------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCC-CHHHHHHHHHHHH--
Q 002169 412 SQRMVATLLNLMDGV----C-------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVP-SPAQRLEILHALL-- 476 (957)
Q Consensus 412 ~~~i~~~Ll~~ld~l----~-------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~~~l-- 476 (957)
.....|+..|+.- . ...++++|+++|+.+ .+++++++ ||+..+.++.| +.+++.+|++..+
T Consensus 159 --~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~ 234 (350)
T 1g8p_A 159 --HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTY 234 (350)
T ss_dssp --HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhc
Confidence 3445677766641 1 123689999999855 89999999 99888999999 6777778886521
Q ss_pred ---------------------------cCCCCCCChHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHh
Q 002169 477 ---------------------------SGMEHSLLDSEVEYLSMATHGF---VGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 477 ---------------------------~~~~~~l~~~~l~~La~~t~g~---~gaDi~~l~~~A~~~a~rr~ 518 (957)
......+++..++.++....+. +.+.+..+++.|...|..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 235 DADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred ccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 1123467888888888876543 45888888888877765443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-12 Score=143.72 Aligned_cols=200 Identities=14% Similarity=0.130 Sum_probs=140.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCC--eEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTK--GVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~--~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~ 369 (957)
+++.|.+.+++.|.+.+...... ..+. .++|+||||||||++++++++.+ +..++.++|.......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 57899999999999887544221 2334 89999999999999999999988 5678899976543210
Q ss_pred ----------------cch-hHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc--C
Q 002169 370 ----------------YGE-SEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--T 429 (957)
Q Consensus 370 ----------------~ge-~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~--~ 429 (957)
.+. .......+.+... ...|.||+|||+|.+ .......|+.+++.... .
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCCc
Confidence 011 1112222222222 245889999999988 13456667777766532 2
Q ss_pred CCeEEEEecCCC---CCchhhhhCCCCcce-eeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcC-------
Q 002169 430 DGVLVIAATNRP---DSIEPALRRPGRLDR-EIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATH------- 496 (957)
Q Consensus 430 ~~v~vI~ttN~~---~~ld~al~r~gRfd~-~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~------- 496 (957)
.++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ....+++..++.++..+.
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCC
Confidence 578999999987 567777777 7764 6999999999999999987754 233568889999999984
Q ss_pred -CCcHHHHHHHHHHHHHHHHH
Q 002169 497 -GFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 497 -g~~gaDi~~l~~~A~~~a~r 516 (957)
+-..+.+..+++.|...+..
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 22456677788777666543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-14 Score=184.79 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=99.6
Q ss_pred HHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHH-----------------HhchhhcHHHHHhc---CCCCCCcc
Q 002169 624 ARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEA-----------------VEWPQKHQEAFKRI---GTRPPTGI 683 (957)
Q Consensus 624 a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~-----------------i~~~~~~~~~~~~l---~~~~~~gi 683 (957)
++....|+++++...++|+++|++--....+.+.+... ..++...+++-.-+ |+.+..-+
T Consensus 656 a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~li 735 (2050)
T 3cmu_A 656 NSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 735 (2050)
T ss_dssp CC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEE
T ss_pred hcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEE
Confidence 44556788899999999999998532333333333221 11233334455555 47778889
Q ss_pred eeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc--------chHHHHHHHHHHHHh----CCCeEEE
Q 002169 684 LMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG--------ESEKAVRSLFAKARA----NAPSIIF 744 (957)
Q Consensus 684 LL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg--------~~~~~ir~~f~~A~~----~~p~ILf 744 (957)
+|+|+||+|||+||..+|..+ +.+++.+++.+....+ .| ..+..+..+++.++. ..|++|+
T Consensus 736 lIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVI 815 (2050)
T 3cmu_A 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 815 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEE
Confidence 999999999999999998876 4568888887765543 12 111224445555444 6799999
Q ss_pred EeCCchhhh-hc--CCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 745 FDEIDGLAA-IR--GKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 745 iDEid~l~~-~r--~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
||.+..+.. .. +..++ ......|.+++++..|..+....++.||++.+-.
T Consensus 816 IDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 816 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp ESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred EcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 999999875 22 11111 1134467789999999988888888888877643
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-13 Score=143.38 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=117.6
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccc
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK 719 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~ 719 (957)
.+|++++|++...+.+.+.+... ...+.+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 46889999999988887776532 12356899999999999999999999874 68999998876321
Q ss_pred c-----ccchH----HH---HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------
Q 002169 720 W-----VGESE----KA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------- 780 (957)
Q Consensus 720 ~-----vg~~~----~~---ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------- 780 (957)
. .|... .. ....|..+. ..+|||||++.+. ..++..|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~---~~~l~lDEi~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-------------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTT---TSEEEEESGGGSC-------------HHHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHHhcCCcccccccccccccchhhhcC---CcEEEEechHhcC-------------HHHHHHHHHHHHhCCeecCCCc
Confidence 1 11100 00 112333333 4599999999763 345667777777421
Q ss_pred --cCCcEEEEEecCCC-------CCCChhhhCCCCcce-ecccCCCCH--HHHHHHHHHHH----hcCCCCC--ccc---
Q 002169 781 --QRVNVTVIAATNRP-------DKIDPALLRPGRFDR-LLYVGPPNE--TDREEIFRIHL----RKIPCSS--DVN--- 839 (957)
Q Consensus 781 --~~~~v~VI~aTN~~-------~~id~aLlr~gRfd~-~i~~~~P~~--~er~~Il~~~l----~~~~~~~--~~~--- 839 (957)
...++.+|++||.+ ..++++|.+ ||.. .+.+|+... ++...+++.++ ...+... ...
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12467899999975 246788888 8852 344544433 33344444333 3333321 223
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 840 IRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 840 l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
+..+.......+.++++++++.++..+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 344444432236789999999887655
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=147.28 Aligned_cols=187 Identities=16% Similarity=0.204 Sum_probs=128.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV--------------- 355 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~--------------- 355 (957)
+.+++++.|.+.+++.++..+. ......+++|+||+||||||+++++|+.+ +.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~-----------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD-----------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT-----------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCCHHHhcCCHHHHHHHHHHHh-----------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 4567889999998888877631 11122349999999999999999999954 21
Q ss_pred -------------cEEEEecccccccccchhHHHHHHHHHHHh--------------ccCCeEEEEcCccccccCCcCCC
Q 002169 356 -------------NLFTVNGPEVVSQNYGESEQALHEVFDSAS--------------QSAPAVVFIDELDAIAPARKDGG 408 (957)
Q Consensus 356 -------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~--------------~~~p~IL~IDEiD~l~~~~~~~~ 408 (957)
.++.+++.+.. ......++..++.+. ...|.|++|||++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 12223222110 001113445554432 2357899999998863
Q ss_pred chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCC-hHH
Q 002169 409 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLL-DSE 487 (957)
Q Consensus 409 ~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~-~~~ 487 (957)
....+.|+..|+.. ..++.+|++||.++.+.+++++ |+ ..+.|+.|+.++..++++..+...+..++ +..
T Consensus 148 ----~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (354)
T 1sxj_E 148 ----KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDI 218 (354)
T ss_dssp ----HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHH
T ss_pred ----HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 23345677777764 3468899999999999999998 77 66999999999999999998877777778 888
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHH
Q 002169 488 VEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 488 l~~La~~t~g~~gaDi~~l~~~A 510 (957)
++.++..+.|- .+++..+++.+
T Consensus 219 l~~i~~~~~G~-~r~a~~~l~~~ 240 (354)
T 1sxj_E 219 LKRIAQASNGN-LRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHTTC-HHHHHHHHTHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHH
Confidence 99999888764 34444444433
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-14 Score=167.37 Aligned_cols=221 Identities=20% Similarity=0.201 Sum_probs=139.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE----eCCCcccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV----KGPELFSKWV 721 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v----~~~~l~~~~v 721 (957)
..|+|++.+|+.+.-++... .+....+...+...++||+||||||||++|+++|+.++..++.. .+.++....+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46889999988775443221 00000001123344799999999999999999999987665442 2223322211
Q ss_pred cch-HH---HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEE
Q 002169 722 GES-EK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVT 786 (957)
Q Consensus 722 g~~-~~---~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~ 786 (957)
... .. .....+..|.. .|+||||+|.+. ....+.|+..|+... ...++.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~---gil~IDEid~l~-------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADG---GIAVIDEIDKMR-------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSS---SEECCTTTTCCC-------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccccCCeeEecCC---CcEEeehhhhCC-------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 110 00 00123444544 499999999762 345667888887432 123678
Q ss_pred EEEecCCCC-------------CCChhhhCCCCccee-cccCCCCHHHHHHHHHHHHhcCC-------------------
Q 002169 787 VIAATNRPD-------------KIDPALLRPGRFDRL-LYVGPPNETDREEIFRIHLRKIP------------------- 833 (957)
Q Consensus 787 VI~aTN~~~-------------~id~aLlr~gRfd~~-i~~~~P~~~er~~Il~~~l~~~~------------------- 833 (957)
||+|||..+ .+++++++ |||.. +..+.|+.+ ...|.+..+....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999886 89999999 99854 445666666 7777776664322
Q ss_pred -------CCCcccHHHHHHH--------------ccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 834 -------CSSDVNIRELACL--------------SEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 834 -------~~~~~~l~~la~~--------------t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
...+...+.+... ..+.|.|.+..+++-|...|..+. ...|+.+|+.+|+.-+.
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~--~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL--KAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS--SCCSSHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC--cCCCCHHHHHHHHHHHH
Confidence 1112223334433 346789999999998887776654 67899999999987543
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=141.71 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=120.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEeccccccccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNY 370 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~~~~~ 370 (957)
+|+++.|.+..+..+.+.+.... ..+.+++|+||||||||++|++++..+. .+++.++|+.+.....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 56788899988888877764431 2357899999999999999999998875 6799999987633211
Q ss_pred -----chhH----H---HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cC
Q 002169 371 -----GESE----Q---ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RT 429 (957)
Q Consensus 371 -----ge~e----~---~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~ 429 (957)
|... . .....|+.+ .+.+|||||+|.+.. .....|+..|+.-. ..
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 1000 0 001123333 346999999998842 34456777776421 12
Q ss_pred CCeEEEEecCCC-------CCchhhhhCCCCcceeeeecCCCHHHH----HHHHHHHHc----CCCC----CCChHHHHH
Q 002169 430 DGVLVIAATNRP-------DSIEPALRRPGRLDREIEIAVPSPAQR----LEILHALLS----GMEH----SLLDSEVEY 490 (957)
Q Consensus 430 ~~v~vI~ttN~~-------~~ld~al~r~gRfd~~I~i~~P~~~~r----~~Il~~~l~----~~~~----~l~~~~l~~ 490 (957)
.++.+|++||.. ..+.+++.+ ||.. +.+..|...+| ..+++.++. ..+. .+++..++.
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 467899999974 135567766 7753 45555655544 334333322 2222 567888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
|....-....+++.++++.+...+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhC
Confidence 877654556788888888876543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-11 Score=159.58 Aligned_cols=354 Identities=17% Similarity=0.182 Sum_probs=179.5
Q ss_pred CCCeEEEEcCCCChHHHHHHH-HHHHcCCcEEEEecccccccccchhHHHHHHHHHHH----h------------ccCCe
Q 002169 328 PTKGVLLHGPPGTGKTSLARL-CAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA----S------------QSAPA 390 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLara-lA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~------------~~~p~ 390 (957)
.+++|||+||||||||++++. ++...+..++.++++.-.. ...+...++.. . .++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 467899999999999987755 4444455677888766433 22333344321 0 02235
Q ss_pred EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------ccCCCeEEEEecCCC-----CCchhhhhCCCCcceee
Q 002169 391 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------CRTDGVLVIAATNRP-----DSIEPALRRPGRLDREI 458 (957)
Q Consensus 391 IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------~~~~~v~vI~ttN~~-----~~ld~al~r~gRfd~~I 458 (957)
|+||||++.-. .+..+......++.++++.-.-+ ..-.++.+|+|+|++ ..+++++.| ||.. +
T Consensus 1377 VlFiDDiNmp~--~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPS--TDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-L 1451 (3245)
T ss_dssp EEEETTTTCCC--CCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-E
T ss_pred EEEecccCCCC--ccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-E
Confidence 99999998643 33344434444444444321101 122468899999988 469999999 8854 8
Q ss_pred eecCCCHHHHHHHHHHHHcCCCCCCC------hHHHHHH-------HH-------HcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 459 EIAVPSPAQRLEILHALLSGMEHSLL------DSEVEYL-------SM-------ATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 459 ~i~~P~~~~r~~Il~~~l~~~~~~l~------~~~l~~L-------a~-------~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
.++.|+.+....|+..++..+....+ +...... .. ...-|+.+|+..+++.-... ....
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~-~~~~ 1530 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA-IQTM 1530 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH-HHTS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh-cCcc
Confidence 99999999999998776543221111 1111111 11 12457899999988754332 2111
Q ss_pred cc---ccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcc
Q 002169 519 SK---IQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFH 595 (957)
Q Consensus 519 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (957)
.. ..-...+.|++.++| .|..++.-| . .++ ...+.+.....-
T Consensus 1531 ~~~~~~~lvrLW~HE~~RVF-------------------~DRLv~~~D-------------r-~~f--~~~l~~~~~~~F 1575 (3245)
T 3vkg_A 1531 DGCTLEGLVRLWAHEALRLF-------------------QDRLVETEE-------------K-EWT--DKKIDEVALKHF 1575 (3245)
T ss_dssp SCCCTTHHHHHHHHHHHHHH-------------------TTTCSSHHH-------------H-HHH--HHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHH-------------------HHHcCCHHH-------------H-HHH--HHHHHHHHHHhc
Confidence 10 000123556655555 111111100 0 000 001111110000
Q ss_pred cCCCC--CCCCCcccccc--ccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHH
Q 002169 596 NGVSD--SSGGMFMSEKG--CALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEA 671 (957)
Q Consensus 596 ~~~~~--~~~~~~~~e~~--~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~ 671 (957)
....+ ..+..+..... ....++.+++...+.. .+.+...+. .. -+++--+++.+-+.+.
T Consensus 1576 ~~~~~~~~~~pllf~~f~~~~Y~~v~~~~l~~~l~~----~L~~yn~~~--~~-m~LVlF~daleHv~RI---------- 1638 (3245)
T 3vkg_A 1576 PSVNLDALKRPILYSNWLTKDYQPVNRSDLREYVKA----RLKVFYEEE--LD-VPLVLFNEVLDHILRI---------- 1638 (3245)
T ss_dssp TTSCGGGGCSSCCCCSSCC----CCCHHHHHHHHHH----HHHTTC---------CCCCCHHHHHHHHHH----------
T ss_pred CcchhhhcccCcchhhhccccCccCCHHHHHHHHHH----HHHHHHhcc--cC-ceEEeHHHHHHHHHHH----------
Confidence 00000 00000000000 0011222222221110 010000000 00 1222223333322222
Q ss_pred HHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHH-hCCCeEEEEeCC
Q 002169 672 FKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKAR-ANAPSIIFFDEI 748 (957)
Q Consensus 672 ~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~-~~~p~ILfiDEi 748 (957)
.++=..|..++||+|..|+||++++|..|...+..++.+....-++ ..+....++.++.+|- .+.|.+++|+|-
T Consensus 1639 -~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~ 1713 (3245)
T 3vkg_A 1639 -DRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDES 1713 (3245)
T ss_dssp -HHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGG
T ss_pred -HHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 2222356677999999999999999999999999998877654322 3567788899998884 566888888873
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=165.87 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~ 407 (957)
...++++.||+|||||++++++|+.+|.+++.++|.+-+. ...+..+|..+... ++++++||++.+.+
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~----- 711 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE----- 711 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH-----
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh-----
Confidence 3578999999999999999999999999999999987544 23456677666543 37999999988743
Q ss_pred CchHHHHHHHHHHHHhhcc--------------ccCCCeEEEEecCC----CCCchhhhhCCCCcceeeeecCCCHHHHH
Q 002169 408 GEELSQRMVATLLNLMDGV--------------CRTDGVLVIAATNR----PDSIEPALRRPGRLDREIEIAVPSPAQRL 469 (957)
Q Consensus 408 ~~~~~~~i~~~Ll~~ld~l--------------~~~~~v~vI~ttN~----~~~ld~al~r~gRfd~~I~i~~P~~~~r~ 469 (957)
+.-..+..++....+.+ .-.....|++|.|+ ...+++++++ || +.+.+..|+.+...
T Consensus 712 --evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 712 --KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHH
Confidence 12222222222222211 22345678889984 3479999998 88 56999999999888
Q ss_pred HHHH
Q 002169 470 EILH 473 (957)
Q Consensus 470 ~Il~ 473 (957)
+|+-
T Consensus 787 ei~l 790 (2695)
T 4akg_A 787 EMIL 790 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=153.22 Aligned_cols=196 Identities=17% Similarity=0.116 Sum_probs=124.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEecc-----cccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGP-----EVVSQN 369 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~-----~l~~~~ 369 (957)
.+.|.++.++.+...+. .+.+|||+||||||||++|+++|..++. +|..+++. ++++.+
T Consensus 23 ~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 47888888776654421 2468999999999999999999998843 45555542 333332
Q ss_pred cchhHHHHHHHHHHHhcc---CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--------ccCCCeEEEEec
Q 002169 370 YGESEQALHEVFDSASQS---APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--------CRTDGVLVIAAT 438 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~---~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--------~~~~~v~vI~tt 438 (957)
.+..... ...|..+... .++||||||++.+. ..+...|+..|+.- ...+..++|++|
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~AT 156 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAAS 156 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcc
Confidence 2221111 1223222222 46799999998652 34567788888642 111223568888
Q ss_pred CCCCC---chhhhhCCCCcceeeeecCCCH-HHHHHHHHHHHcCC-----------------------CCCCChHHHHHH
Q 002169 439 NRPDS---IEPALRRPGRLDREIEIAVPSP-AQRLEILHALLSGM-----------------------EHSLLDSEVEYL 491 (957)
Q Consensus 439 N~~~~---ld~al~r~gRfd~~I~i~~P~~-~~r~~Il~~~l~~~-----------------------~~~l~~~~l~~L 491 (957)
|++.. ..+++.+ ||...+.++.|+. +++.+|++...... ...+++..++.+
T Consensus 157 N~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i 234 (500)
T 3nbx_X 157 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELI 234 (500)
T ss_dssp SSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHH
Confidence 86433 4458888 9988899999987 77888887643211 334566666666
Q ss_pred HHHc---------CCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 492 SMAT---------HGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 492 a~~t---------~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+... .|.+.+.+..+++.|...|..+.+.
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~ 272 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS 272 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 6554 4778888888888887777655543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=160.55 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=84.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----c------------ccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----W------------VGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----~------------vg~~~~~ir~~f~~A~ 736 (957)
|++++++++|+||||||||+||.+++.+. |.....++..+.+.. . ....++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37888899999999999999999998775 445556665543211 1 1245677788888899
Q ss_pred hCCCeEEEEeCCchhhhhc---CCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 737 ANAPSIIFFDEIDGLAAIR---GKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r---~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
..+|++|||||++.+.+.. +..+++ .....|+++++|.+|.+.....+++||++-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999999887642 222221 122478999999999988777777776653
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-13 Score=131.08 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=83.0
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE 723 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~ 723 (957)
+++|.+...+.+.+.+... .....+++|+||||||||++|++|+... +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5778888888887776532 2345679999999999999999999986 77999 999877544
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 724 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
......|+.+..+ +|||||+|.+. ...+..|+..|... ..++.+|++||.+
T Consensus 66 --~~~~~~~~~a~~g---~l~ldei~~l~-------------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQGG---TLVLSHPEHLT-------------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTTS---CEEEECGGGSC-------------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCCc---EEEEcChHHCC-------------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2345567777554 99999999773 34556677777533 4467899999975
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-12 Score=139.49 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=115.9
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|||||++|+++|+.+.. .++.+.+.+- + .......+|.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHH
Confidence 45667999999999999999999998743 2444443210 0 0123456778877
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +...|++|||+|.+. ....+.|+..|+. +..++++|++||.++.+.+++++ |+ .
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~-------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT-------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-R 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC-------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-E
T ss_pred HHhhccccCCcEEEEECchhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-e
Confidence 7653 346899999999773 3456788998885 34578999999999999999999 87 4
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
.+.|++|+.++..++++... .+ ++..+..+++.+.| +.+++.++++.+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999998888765 22 33456778888877 666666655543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=157.06 Aligned_cols=215 Identities=20% Similarity=0.294 Sum_probs=137.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC---cEEEEeCCC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL---NFLAVKGPE 715 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~---~~i~v~~~~ 715 (957)
..+...|++++|++.+++.+...+. ...+++|+|||||||||+|++||+.+.. ..+.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 4567788999999999988877764 2358999999999999999999998743 223232211
Q ss_pred cc--cc---c---------------------------------------------------ccchHHHH-----------
Q 002169 716 LF--SK---W---------------------------------------------------VGESEKAV----------- 728 (957)
Q Consensus 716 l~--~~---~---------------------------------------------------vg~~~~~i----------- 728 (957)
.- .. + +.+.....
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 10 00 0 00000000
Q ss_pred ---------------HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------------
Q 002169 729 ---------------RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------------- 780 (957)
Q Consensus 729 ---------------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------------- 780 (957)
...+..| .+.+|||||++.+ ...+++.|+..|+...
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a---~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~ 242 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRA---HKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGA 242 (604)
T ss_dssp C----CCCCGGGGEECCHHHHT---TTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGG
T ss_pred hhcCCccccccccccCceeeec---CCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccc
Confidence 1122222 3459999999976 2456677888777321
Q ss_pred ------cCCcEEEEEecCCC--CCCChhhhCCCCcc---eecccCCC---CHHHHHHHHHHHHhcC------CCCCcccH
Q 002169 781 ------QRVNVTVIAATNRP--DKIDPALLRPGRFD---RLLYVGPP---NETDREEIFRIHLRKI------PCSSDVNI 840 (957)
Q Consensus 781 ------~~~~v~VI~aTN~~--~~id~aLlr~gRfd---~~i~~~~P---~~~er~~Il~~~l~~~------~~~~~~~l 840 (957)
...++.||++||+. +.++++|++ ||+ ..++++.. ..+....+++...+.. ....+..+
T Consensus 243 ~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl 320 (604)
T 3k1j_A 243 MVRTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAV 320 (604)
T ss_dssp GCBCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHH
T ss_pred cCCCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHH
Confidence 12368899999987 679999999 986 34555432 2344556655444321 11123334
Q ss_pred HHHHHHc---cCC------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 841 RELACLS---EGC------TGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 841 ~~la~~t---~g~------sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
..+.+.. .|- +.|++.++++.|...|..+. ...|+.+|+.+|+...
T Consensus 321 ~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~--~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 321 EEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG--KKYVEREDVIEAVKMA 375 (604)
T ss_dssp HHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC--cccccHHHHHHHHHhh
Confidence 5554433 442 68999999999987776554 6689999999999653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=136.87 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=126.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
...++++.|.+.+++.|...+... .. .+++|+|||||||||+|+++|+.+. ..+..+++++..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 456788999999988888775321 11 2499999999999999999999863 246777766532
Q ss_pred ccccchhHHHHHHHHHHHh------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 367 SQNYGESEQALHEVFDSAS------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
+ ...++..+.... ...+.|++|||+|.+.. ...+.|+..++.. ...+.+|+++|.
T Consensus 89 ~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~il~~n~ 149 (340)
T 1sxj_C 89 G------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERY--TKNTRFCVLANY 149 (340)
T ss_dssp S------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESC
T ss_pred c------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcC--CCCeEEEEEecC
Confidence 1 122333333222 12368999999998842 2345677777764 356788899999
Q ss_pred CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 441 ~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
+..+.+++++ |+. .+.+..++.++..+++...+......+++..++.++..+.|
T Consensus 150 ~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 150 AHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp GGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999 775 58899999999999999888776777788888888887765
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-12 Score=138.80 Aligned_cols=189 Identities=25% Similarity=0.258 Sum_probs=122.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc---
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY--- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~--- 370 (957)
++.|.++.+..+.+.+... ...+.+|||+||||||||++|++++... +.+|+.++|..+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 4778888888887776443 1346789999999999999999999865 56899999987643210
Q ss_pred ----------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cCCC
Q 002169 371 ----------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDG 431 (957)
Q Consensus 371 ----------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~~~ 431 (957)
|... .....|+.+. .++|||||+|.+.. .....|+..|+... ...+
T Consensus 73 lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 73 LFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred hcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 1000 1123444443 35999999998842 34556777776532 1245
Q ss_pred eEEEEecCCC-------CCchhhhhCCCCcceeeeecCCCHHHH----HHHHHHHHcC----C---CCCCChHHHHHHHH
Q 002169 432 VLVIAATNRP-------DSIEPALRRPGRLDREIEIAVPSPAQR----LEILHALLSG----M---EHSLLDSEVEYLSM 493 (957)
Q Consensus 432 v~vI~ttN~~-------~~ld~al~r~gRfd~~I~i~~P~~~~r----~~Il~~~l~~----~---~~~l~~~~l~~La~ 493 (957)
+.||++||.. ..+.+.+.. ||. .+.+..|...+| ..+++.++.. . ...+++..++.|..
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8899999975 112334444 543 355666665544 3355444332 1 24568888888888
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 002169 494 ATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 494 ~t~g~~gaDi~~l~~~A~~~ 513 (957)
+.-.-+.+++.++++.|...
T Consensus 215 ~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 76445678888888877543
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-13 Score=130.47 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=82.4
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHH
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEK 726 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~ 726 (957)
+++|.+...+.+.+.+... .....+++|+||||||||++|++++.... +|+.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 5678888888888877532 13456799999999999999999999888 99999998764432
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.+..|+.+.. .+|||||+|.+. ...+..|+..|+... ..++.+|++||.+
T Consensus 67 -~~~~~~~a~~---~~l~lDei~~l~-------------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAEG---GVLYVGDIAQYS-------------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTTT---SEEEEEECTTCC-------------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCCC---CeEEEeChHHCC-------------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 4566776654 499999999773 334556677776542 3468899999865
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-11 Score=131.00 Aligned_cols=142 Identities=11% Similarity=0.140 Sum_probs=108.5
Q ss_pred ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh------CCcEEEEeCCCcccccccc
Q 002169 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPELFSKWVGE 723 (957)
Q Consensus 650 G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------~~~~i~v~~~~l~~~~vg~ 723 (957)
|++++.+.+...+.. + + ...+|||||||||||++|+++|+.+ ..+++.+++.+- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677788888777753 1 2 4579999999999999999999864 457777776421 12
Q ss_pred hHHHHHHHHHHHHhCC----CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 724 SEKAVRSLFAKARANA----PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~----p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
....+|.+++.+.... ..|+||||+|.+. ....+.|+..|+. +..++++|++||.++.+.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 3456788888886432 4799999999773 4457789999985 3457888899999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
++++ | ++.|++|+.++..+.++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 88999999999988888776
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.2e-11 Score=133.93 Aligned_cols=226 Identities=10% Similarity=0.083 Sum_probs=146.5
Q ss_pred cccccCChHHHHHHHHHHH-hchhhcHHHHHhcCC-CCCCccee--eCCCCChhhHHHHHHHHHh---------CCcEEE
Q 002169 644 KWEDVGGQREVKTQLMEAV-EWPQKHQEAFKRIGT-RPPTGILM--FGPPGCSKTLMARAVASEA---------GLNFLA 710 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i-~~~~~~~~~~~~l~~-~~~~giLL--~GPpGtGKTtlAkaiA~~~---------~~~~i~ 710 (957)
..++++|.++..+.+.+.+ ..... +. ..+..++| +||+|||||++++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3477899999888888776 42111 10 23456888 9999999999999999876 456777
Q ss_pred EeCCCcccc---------c-------ccchHHH-HHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 711 VKGPELFSK---------W-------VGESEKA-VRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 711 v~~~~l~~~---------~-------vg~~~~~-ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
+++...... . .+..... ...+..... ...|.||+|||+|.+...+. .....+..+
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l 164 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTL 164 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHH
Confidence 775332110 0 0111112 222222222 35688999999998853210 123455555
Q ss_pred HHHHhcccc-C--CcEEEEEecCCCCC---CC---hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC---CCCcccH
Q 002169 773 LVELDGLHQ-R--VNVTVIAATNRPDK---ID---PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP---CSSDVNI 840 (957)
Q Consensus 773 L~~ld~~~~-~--~~v~VI~aTN~~~~---id---~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~l 840 (957)
+..++.... . .++.+|++|+.++. ++ +.+.+ ||...+.+++++.++..++++..+.... ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 566654321 2 57889989886652 34 66666 6655699999999999999987765321 1223446
Q ss_pred HHHHHHcc------CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 841 RELACLSE------GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 841 ~~la~~t~------g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
..++..+. | ..+.+..+++.|+..+..+. ...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~--~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG--RDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHh
Confidence 77888888 7 67788899988887776543 45788899988876543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=120.66 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=80.3
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchh
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES 373 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~ 373 (957)
++.|.++.++.+.+.+... ...+.+|+|+||||||||++|++++... +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 4678888888877775433 1346789999999999999999999876 67888 999887554
Q ss_pred HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 374 e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
......|+.+. .++|||||+|.+.+ .....|+..|.. ...++.+|++||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~-----------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR-----------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH-----------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH-----------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 22344566654 35999999998842 334557777744 24467889999874
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=128.79 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------cEEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------NLFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~------------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||||+|||++|+++|+.+.. .++.+++.+- +. .-....++.+++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 3557999999999999999999988753 2344443210 01 1123456777776
Q ss_pred Hhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 ASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+.. ..+.|++|||+|.+.. ...+.|+..|+. ...++++|++||.++.+.+++++ |+. .+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~ 163 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-LHY 163 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-EEE
T ss_pred HhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-eee
Confidence 643 3468999999999842 235678888876 34578999999999999999999 764 599
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
|+.|+.++..++++... .+++..++.++..+.|-.+
T Consensus 164 ~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPG 199 (334)
T ss_dssp CCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHH
T ss_pred CCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHH
Confidence 99999999999988764 4577778888888776443
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=120.29 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=81.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHH
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQA 376 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~ 376 (957)
++.|.++.++.+++.+.... ..+.+|+|+||||||||++|++++...+ +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 46788888888888865431 2356899999999999999999998887 89999998765433
Q ss_pred HHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 377 LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 377 i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
...+|+.+. +.+|||||+|.+.. .....|+..++... ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR-----------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH-----------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH-----------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455666654 45999999998843 23445666666532 4567889999864
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.1e-12 Score=151.11 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=122.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE----ecccccccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV----NGPEVVSQNYG 371 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i----~~~~l~~~~~g 371 (957)
..|.|.+.+++.+.-.+.-.. ...+.+..+....+|||+||||||||++|+++|..++..++.. ++..+......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 358899987766532211100 0001111233445899999999999999999999987665442 22333322211
Q ss_pred h-----hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEE
Q 002169 372 E-----SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVI 435 (957)
Q Consensus 372 e-----~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI 435 (957)
. .... ...+..| ..+|+||||+|.+.+ .....|+..|+.-. ...++.||
T Consensus 374 ~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccccc-CCeeEec---CCCcEEeehhhhCCH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 1 0000 0122223 245999999998843 23456777776421 12467899
Q ss_pred EecCCCC-------------CchhhhhCCCCccee-eeecCCCHHHHHHHHHHHHcCCCC--------------------
Q 002169 436 AATNRPD-------------SIEPALRRPGRLDRE-IEIAVPSPAQRLEILHALLSGMEH-------------------- 481 (957)
Q Consensus 436 ~ttN~~~-------------~ld~al~r~gRfd~~-I~i~~P~~~~r~~Il~~~l~~~~~-------------------- 481 (957)
+|||+.. .+++++++ |||.. +..+.|+.+ ...|.+..+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999986 89999999 99854 456667777 77888776654221
Q ss_pred -----CCChHHHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 482 -----SLLDSEVEYLSMA--------------THGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 482 -----~l~~~~l~~La~~--------------t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
.++++..+.+... ..+.+.+.+..+++.|...|..+..
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~ 572 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK 572 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc
Confidence 2333334444443 2456777777787777666644433
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-11 Score=104.58 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=72.6
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 812 YVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 812 ~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.-.+|+.++|.+||+.+++++++..+++++.||+.|+||||+||.++|++|++.|+++. ...|+.+||..|+.++.|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHccC
Confidence 35789999999999999999999889999999999999999999999999999999986 5689999999999998764
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=100.50 Aligned_cols=75 Identities=33% Similarity=0.610 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 814 GPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 814 ~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
|+|+.++|.+||+.+++++++..++++..||..|+||||+||.++|++|++.|+++. ...|+.+||..|+.++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998889999999999999999999999999999999986 668999999999988754
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-10 Score=121.98 Aligned_cols=142 Identities=13% Similarity=0.235 Sum_probs=104.1
Q ss_pred CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEecccccccccchh
Q 002169 300 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEVVSQNYGES 373 (957)
Q Consensus 300 Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l------~~~~i~i~~~~l~~~~~ge~ 373 (957)
|.+++++.|+..+... . ...+|||||||+|||++|+++|+.+ ...++.+++.+ .. -.
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CC
Confidence 4455666666664322 1 3479999999999999999999864 34677777542 11 12
Q ss_pred HHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 374 EQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 374 e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
-..++.+++.+... ...|+||||+|.+.. ...+.|+..|+. ...++++|++|+.++.+.|+++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH
Confidence 33567777776532 247999999999842 235678888887 3567889999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHH
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALL 476 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l 476 (957)
+ | .++|..|+.++..++++..+
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9 7 68999999999999998776
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=102.15 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 817 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 817 ~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+.++|.+||+.+++++++..++++..||..|+||||+||.++|++|++.|+++. ...|+.+||..|++++.+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--CSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999999999999999999986 5679999999999999876
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=130.79 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=128.6
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccc---
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK--- 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~--- 719 (957)
+.++|.....+.+.+.+... ......++++|++|||||++|++|..... .+|+.+++..+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45667766666666655421 23355689999999999999999998764 69999999875321
Q ss_pred ----------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------
Q 002169 720 ----------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 780 (957)
Q Consensus 720 ----------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------- 780 (957)
+.|... .....|+.|.++ +||||||+.+ ...++..|+..|+...
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a~~g---tlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELADGG---TLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHTTTS---EEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeCCCc---EEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 111111 124567777776 9999999966 4566777888877421
Q ss_pred cCCcEEEEEecCCCCCCChhhhCCCCcceec-------ccCCCCHHHH----HHHHH----HHHhcCCCC-CcccH---H
Q 002169 781 QRVNVTVIAATNRPDKIDPALLRPGRFDRLL-------YVGPPNETDR----EEIFR----IHLRKIPCS-SDVNI---R 841 (957)
Q Consensus 781 ~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i-------~~~~P~~~er----~~Il~----~~l~~~~~~-~~~~l---~ 841 (957)
...++.||+|||..-. .+.+.|+|...+ .+..|...+| ..+++ .+.++++.. ..... .
T Consensus 269 ~~~~~rii~at~~~l~---~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 269 IEVNVRILAATNRNIK---ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp EECCCEEEEEESSCHH---HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeccEEEEEeCCCCHH---HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1237889999996533 445556775433 2445666554 23333 333344433 12333 3
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 842 ELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 842 ~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.|.....--+.++++++++.|+..+ +...|+.+|+...+
T Consensus 346 ~l~~~~wpGNvreL~~~i~~~~~~~-----~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 346 LLLSYPWYGNVRELKNVIERAVLFS-----EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHC-----CSSEECHHHHHHHC
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC-----CCCcCcHHHCcHhh
Confidence 3333332225789999999988765 24568888886543
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=123.41 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=132.0
Q ss_pred cccCCcHHHHHHHHHHH-HhhhhhhhhhhcCC-CCCCeEEE--EcCCCChHHHHHHHHHHHc---------CCcEEEEec
Q 002169 296 SKLGGLSKEYAILKDII-ISSSVKSTLSSLGL-RPTKGVLL--HGPPGTGKTSLARLCAHDS---------GVNLFTVNG 362 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i-~~~~~~~~~~~l~i-~~~~~vLL--~GppGtGKTtLaralA~~l---------~~~~i~i~~ 362 (957)
+.+.|.+.+++.|.+.+ ..... +. ..+..++| +||+|+|||+|++.+++.+ +..++.++|
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56899999999998886 43311 11 24568999 9999999999999999876 456778887
Q ss_pred ccccccc----------------cch-hHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 363 PEVVSQN----------------YGE-SEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 363 ~~l~~~~----------------~ge-~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
....... .+. .......+.+... ...|.||+|||+|.+...... ....+..++..++
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHHHHH
Confidence 4321100 011 1111222222222 245789999999998643111 1234444555555
Q ss_pred cccc-C--CCeEEEEecCCCC---Cch---hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHH
Q 002169 425 GVCR-T--DGVLVIAATNRPD---SIE---PALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSM 493 (957)
Q Consensus 425 ~l~~-~--~~v~vI~ttN~~~---~ld---~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~ 493 (957)
.... . .++.+|++++.++ .++ +.+.+ ||...+.++.++.++..+++...+.. ....+++..++.++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4321 2 5788888887655 344 55666 55555999999999999999876542 223457788889998
Q ss_pred HcC------CCcHHHHHHHHHHHHHHHHH
Q 002169 494 ATH------GFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 494 ~t~------g~~gaDi~~l~~~A~~~a~r 516 (957)
.+. |. +..+..+++.|...+..
T Consensus 248 ~~~~~~~~~G~-p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 248 VYGEDKGGDGS-ARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHCGGGTSCCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCc-HHHHHHHHHHHHHHHHH
Confidence 888 64 55677777777655543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-10 Score=138.50 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+.++.. ....++..|..+....+..||++||+.+.
T Consensus 474 QRv~iAraL~~~p~lLlLDEPT~gLD~~------------~~~~i~~ll~~l~~~~g~tviivtHdl~~ 530 (608)
T 3j16_B 474 QRVAIVLALGIPADIYLIDEPSAYLDSE------------QRIICSKVIRRFILHNKKTAFIVEHDFIM 530 (608)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTCCHH------------HHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHH------------HHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3778899999999999999999765432 22233333333322336789999998765
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-08 Score=134.29 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~ 407 (957)
...+..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|..+... .+...+||++.+-..
T Consensus 603 ~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~---- 671 (3245)
T 3vkg_A 603 SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER---- 671 (3245)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH----
Confidence 34567899999999999999999999999999999875432 3456666665543 468999999887321
Q ss_pred CchHHHHHHHH-HHHHhh-------------c--cccCCCeEEEEecCC----CCCchhhhhCCCCcceeeeecCCCHHH
Q 002169 408 GEELSQRMVAT-LLNLMD-------------G--VCRTDGVLVIAATNR----PDSIEPALRRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 408 ~~~~~~~i~~~-Ll~~ld-------------~--l~~~~~v~vI~ttN~----~~~ld~al~r~gRfd~~I~i~~P~~~~ 467 (957)
.-.++.+ +..+.. + +.-..++.|++|+|+ -.+++++++. || +.+.+..|+.+.
T Consensus 672 ----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 672 ----ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 1122222 111111 1 122345788999985 3589999998 77 559999999988
Q ss_pred HHHHHH
Q 002169 468 RLEILH 473 (957)
Q Consensus 468 r~~Il~ 473 (957)
..+|+-
T Consensus 745 i~ei~L 750 (3245)
T 3vkg_A 745 IAQVML 750 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=134.84 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=76.7
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-------------------cCCCeEEEEecCCC--CCchh
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------------------RTDGVLVIAATNRP--DSIEP 446 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-------------------~~~~v~vI~ttN~~--~~ld~ 446 (957)
.+.+|||||++.+. ..+...|+..|+.-. ...++.||++||+. +.+++
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 35699999999873 234556777776321 12367899999986 67899
Q ss_pred hhhCCCCcc---eeeeecC--C-CHHHHHHHHHHHHcC-----CCCCCChHHHHHHHHHc---CCC------cHHHHHHH
Q 002169 447 ALRRPGRLD---REIEIAV--P-SPAQRLEILHALLSG-----MEHSLLDSEVEYLSMAT---HGF------VGADLAAL 506 (957)
Q Consensus 447 al~r~gRfd---~~I~i~~--P-~~~~r~~Il~~~l~~-----~~~~l~~~~l~~La~~t---~g~------~gaDi~~l 506 (957)
+|++ ||. ..+.++. + ..+....+++..... ....+++..++.+.... .|- +.+++.++
T Consensus 270 ~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 9999 885 3344432 1 344455555443322 22456788888887754 442 68999999
Q ss_pred HHHHHHHHHHH
Q 002169 507 CNEAALVCLRR 517 (957)
Q Consensus 507 ~~~A~~~a~rr 517 (957)
++.|...|..+
T Consensus 348 lr~A~~~A~~~ 358 (604)
T 3k1j_A 348 VRAAGDIAVKK 358 (604)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99987766544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-10 Score=114.41 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=75.5
Q ss_pred cCCccccccCC----hHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEE
Q 002169 640 VPKVKWEDVGG----QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAV 711 (957)
Q Consensus 640 ~p~v~~~di~G----~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v 711 (957)
..+.+|+++++ ++++.+.+++++. .+....+.+++|+||||||||++++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34567888775 3344444444332 2344456789999999999999999999876 5566666
Q ss_pred eCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe
Q 002169 712 KGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 790 (957)
Q Consensus 712 ~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a 790 (957)
+..++...+...... ....+++.. ..|.+|+|||++... ........+...++.... .+..+|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-----------~~~~~~~~l~~ll~~~~~-~~~~ii~t 139 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-----------LSDWQRELISYIITYRYN-NLKSTIIT 139 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC-----------CCHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc-----------CCHHHHHHHHHHHHHHHH-cCCCEEEE
Confidence 655554332111000 001122222 257799999998431 112222233333443322 25678888
Q ss_pred cCCCCC
Q 002169 791 TNRPDK 796 (957)
Q Consensus 791 TN~~~~ 796 (957)
||.+..
T Consensus 140 sn~~~~ 145 (180)
T 3ec2_A 140 TNYSLQ 145 (180)
T ss_dssp CCCCSC
T ss_pred cCCChh
Confidence 887654
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.9e-10 Score=98.11 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCc
Q 002169 817 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSE 892 (957)
Q Consensus 817 ~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~ 892 (957)
+.++|.+||+.+++++++..++++..+|..|+||||+||.++|++|++.|+++. ...|+.+||..|+.+++|+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN--RYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--CSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHccCc
Confidence 678999999999999998889999999999999999999999999999999875 56899999999999999983
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=129.69 Aligned_cols=57 Identities=5% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+.++.. ...+++..|..+....+..||++||+.+.
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~------------~~~~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVE------------ERYIVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHH------------HHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHH------------HHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 4888999999999999999999765432 22234444444333446788999997754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.8e-10 Score=111.91 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=65.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDEL 397 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEi 397 (957)
++.+..+++++|+||||||||||++++++.+ |..++.+++.++.......... ....+++. ...|.+|+|||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCC
Confidence 4566678999999999999999999999876 5566667766654432211100 00012222 125789999998
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
+... .+... ...|..+++.... .+..+|++||.+.
T Consensus 110 ~~~~------~~~~~---~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 110 GSER------LSDWQ---RELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp SSSC------CCHHH---HHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred CCCc------CCHHH---HHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 7541 11222 2344555554432 3456777777653
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-09 Score=119.40 Aligned_cols=190 Identities=17% Similarity=0.232 Sum_probs=115.1
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCcccc-----
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSK----- 719 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~~----- 719 (957)
.++|.......+.+.+... ......++++|++||||+++|+++....+. .|+.+++..+-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4566666666665554321 123456999999999999999999988754 3999999875322
Q ss_pred ----cccchH---HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 720 ----WVGESE---KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 720 ----~vg~~~---~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
..|.+. +.....|+.|.++ +||||||+.+ ...++..|+..|+... ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 111111 1123467777666 9999999976 4566777888887431 123
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHH----HHHHHHHHH----hcCCCC-Cccc---HHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETD----REEIFRIHL----RKIPCS-SDVN---IRELA 844 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~e----r~~Il~~~l----~~~~~~-~~~~---l~~la 844 (957)
++.+|+|||..-. .+...|+|.. .+.+..|...+ ...+++.++ .+.+.. ..+. +..|.
T Consensus 263 ~~rii~at~~~l~---~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 339 (368)
T 3dzd_A 263 DIRVISATNKNLE---EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM 339 (368)
T ss_dssp CCEEEEEESSCHH---HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred eeEEEEecCCCHH---HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 6889999995422 3444566654 22333444444 344444444 333322 1233 33444
Q ss_pred HHccCCcHHHHHHHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~~a 866 (957)
....--+.++++++++.|+..+
T Consensus 340 ~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 340 KQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 4432225799999999887654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=118.82 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++.. ....++..|..+....+..||++||+.+.
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~------------~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVE------------QRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHH------------HHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHH------------HHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 677888889999999999999765432 22233344443322335688999997655
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.3e-08 Score=113.83 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++. ....+++..|..+....+..||++||+.+.
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDV------------EQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCH------------HHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 77888999999999999999976543 222233334433322235678999997765
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-09 Score=102.39 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
+++.++|+||+|+|||+|++++++.+ |...+.+++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 67899999999999999999999987 667888888777553 11235789999999875321
Q ss_pred cCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCCch--hhhhCCCCcce
Q 002169 405 KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSIE--PALRRPGRLDR 456 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~ld--~al~r~gRfd~ 456 (957)
. ...|+.+++.+...+..++|+++| .++.+. +.+++ |+..
T Consensus 99 -------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 99 -------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp -------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred -------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 1 344556666554444443555666 454333 67776 6644
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=120.69 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc----------------------cc----cc--ch
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS----------------------KW----VG--ES 724 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~----------------------~~----vg--~~ 724 (957)
++.+..-++|.||||+|||||++.++... |...+.+...+-.. .+ .. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45556669999999999999999998764 34445554332100 00 00 23
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
....+.+++.+....|.+|+|| ..+.++.... + ......+..++..+. ..++.||++||..
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~--~--~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVS--N--NAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSC--H--HHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCC--h--HHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 4566788889989999999999 7766543210 0 112333334444443 2367888888876
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=97.81 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=67.9
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhc
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r 755 (957)
+...++|+||+|+|||++++++++.. +...+.+++.++... +....|.+|+|||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 45679999999999999999999987 667888888877543 11235789999999875321
Q ss_pred CCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-CCCCC--hhhhCCCCcceecc
Q 002169 756 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-PDKID--PALLRPGRFDRLLY 812 (957)
Q Consensus 756 ~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-~~~id--~aLlr~gRfd~~i~ 812 (957)
. ...++..++.....+..++|++||. |..+. +.+.+ ||.....
T Consensus 99 ---------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 99 ---------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp ---------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred ---------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 1 2334444444333323335567774 44332 77777 7754433
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-09 Score=93.18 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 819 TDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 819 ~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
++|.+||+.+++++++..++++..+|..|+||||+||.++|++|++.|+++. ...|+.+||..|+.++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHH
Confidence 4689999999999998889999999999999999999999999999999986 56799999999999985
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-08 Score=112.29 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHH-HHHhCCcEEE-EeCCC---ccccccc
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV-ASEAGLNFLA-VKGPE---LFSKWVG 722 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkai-A~~~~~~~i~-v~~~~---l~~~~vg 722 (957)
|.|++.+|..+.-++...... .+..-++||.|+||| ||++||++ ++.+....+. ..++. +.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 889999988876665421100 122337999999999 99999999 7765432221 11110 1110000
Q ss_pred ch-HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------cCCcEEEEEecCCC
Q 002169 723 ES-EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------QRVNVTVIAATNRP 794 (957)
Q Consensus 723 ~~-~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------~~~~v~VI~aTN~~ 794 (957)
.+ -..-...+..|.++ |+|+||++.+ ....+..|+..|+... -..++.||+|+|..
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00 00002234556566 9999999955 5667778888887431 13468899999986
Q ss_pred C-----------CCChhhhCCCCcceecc-cCCCCHHH-------------HHHHHHHHHh-c--CCCCCcccHHHHH--
Q 002169 795 D-----------KIDPALLRPGRFDRLLY-VGPPNETD-------------REEIFRIHLR-K--IPCSSDVNIRELA-- 844 (957)
Q Consensus 795 ~-----------~id~aLlr~gRfd~~i~-~~~P~~~e-------------r~~Il~~~l~-~--~~~~~~~~l~~la-- 844 (957)
+ .+.++++. |||-++. .+.|+.+. ..+.+. +.+ . .+...+...+.+.
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHH
Confidence 5 78899999 9986543 35554332 112211 222 1 1211111111111
Q ss_pred ----H-----------HccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 845 ----C-----------LSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 845 ----~-----------~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+ ..-|.|.|.+..+++-|...|..+. ...|+.+|+..|+.-+.
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g--R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL--SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC--cCCCCHHHHHHHHHHHH
Confidence 0 2347789999999998887777765 67899999999886543
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-08 Score=109.68 Aligned_cols=191 Identities=23% Similarity=0.264 Sum_probs=117.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEeccccccccc--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNY-- 370 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~~~~~-- 370 (957)
..+.|.....+.+.+.+... .....+|+|+|++||||+++|++++...+ .+|+.++|..+.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 34566666555555554331 13456799999999999999999998764 6899999987543210
Q ss_pred -----------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cCC
Q 002169 371 -----------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTD 430 (957)
Q Consensus 371 -----------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~~ 430 (957)
|... .....|+.|.. .+|||||++.+. ..+...|+..|+.-. ...
T Consensus 207 elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVS-SKEGFFELADG---GTLFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HhcCCCCCCCCCccc-ccCCceeeCCC---cEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 1100 01234555544 499999999883 345566777776421 123
Q ss_pred CeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHH----HHHHHHHc----CCC---CCCChHHHHHHH
Q 002169 431 GVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRL----EILHALLS----GME---HSLLDSEVEYLS 492 (957)
Q Consensus 431 ~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~----~Il~~~l~----~~~---~~l~~~~l~~La 492 (957)
++.+|++||.. +.. +.+.|+|.. .+.+..|...+|. .+++.++. +++ ..+++..++.|.
T Consensus 272 ~~rii~at~~~--l~~-~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRN--IKE-LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSC--HHH-HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCC--HHH-HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 57899999863 222 222345532 2456677766553 33333332 222 235777888887
Q ss_pred HHcCCCcHHHHHHHHHHHHHHH
Q 002169 493 MATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 493 ~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+.-..+.++|+++++.|+..+
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 7654556679999988876543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-08 Score=110.78 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
+.+...++|+||||||||+||.++|.+.+. .|+.+...+.++.+....+..++.+++.+.... +|+|||++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 444555899999999999999999987543 467764344444444445556666666666554 9999999998544
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhh
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPAL 801 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aL 801 (957)
.... ...+...+.+.+++..|.+.....++++|++|| +...|+++
T Consensus 198 ~~~~-s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGN-TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccc-cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 3221 111122455667777777665566888999988 44555553
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.4e-07 Score=98.75 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=116.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc------c--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV------S-- 367 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~------~-- 367 (957)
+.+.|.+.+++.|.+.+.. +..++|+||+|+|||+|++.+++..+ .+.+++.... .
T Consensus 12 ~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHH
Confidence 4578999999998887531 25899999999999999999999876 6666654321 0
Q ss_pred -------ccc-------------------------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 368 -------QNY-------------------------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 368 -------~~~-------------------------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
... ......+..+.+.+....|.+|+|||++.+...... ....+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~----~~~~~ 151 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR----GGKEL 151 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----TTHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----chhhH
Confidence 000 001111222222222224899999999988541100 11223
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCchhh-----hhC--CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHH
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPA-----LRR--PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV 488 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a-----l~r--~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l 488 (957)
...|..+++.. .++.+|+++.....+... ... .||+...+.+++.+.++..+++...+...+..+++..+
T Consensus 152 ~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~ 228 (350)
T 2qen_A 152 LALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228 (350)
T ss_dssp HHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33343444432 467777776543212211 011 23666679999999999999998877766666678888
Q ss_pred HHHHHHcCCCcHHHHHHHH
Q 002169 489 EYLSMATHGFVGADLAALC 507 (957)
Q Consensus 489 ~~La~~t~g~~gaDi~~l~ 507 (957)
..+...+.|+-. -+..++
T Consensus 229 ~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 229 EEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp HHHHHHHTTCHH-HHHHHH
T ss_pred HHHHHHhCCCHH-HHHHHH
Confidence 889998988753 344443
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-08 Score=117.59 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCC---eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 727 AVRSLFAKARANAP---SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 727 ~ir~~f~~A~~~~p---~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.-|..+++|....| .||++||+.+.++. .....++..+..+... +.+||++||+++
T Consensus 549 ~qrv~iAraL~~~p~~p~llllDEPt~~LD~------------~~~~~i~~~l~~l~~~-g~tvi~vtHd~~ 607 (670)
T 3ux8_A 549 AQRVKLAAELHRRSNGRTLYILDEPTTGLHV------------DDIARLLDVLHRLVDN-GDTVLVIEHNLD 607 (670)
T ss_dssp HHHHHHHHHHHSCCCSCEEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECCCHH
T ss_pred HHHHHHHHHHhhCCCCCcEEEEeCCCCCCCH------------HHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 34677888876655 69999999966532 2223344444444333 678999999775
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-08 Score=112.05 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
|+.++..++|+||||||||+||..+|...+.. |+.....+.++.+..+.+..+..+++.+.... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 56677788999999999999999999765444 55552233334333455666666666665544 999999999865
Q ss_pred CCcCCCc-hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 403 ARKDGGE-ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 403 ~~~~~~~-~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....+. ....+...+++..|.++....++++|+++|+ ...++++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchhH
Confidence 4432110 0012333445555555444557788888884 4444443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=116.96 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=26.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~ 351 (957)
++.+.+++.+.|.||+|+|||||+++|++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35677899999999999999999999994
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-07 Score=102.02 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=113.0
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc-----
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL----- 716 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l----- 716 (957)
....+.++|.++..+.|.+ +.. ..++++||+|+|||++++.++++.+..++.+++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 3445678899888887776 531 479999999999999999999998777777776432
Q ss_pred cc--cc-------c------------------c--------c------hHHHHHHHHHHHHhC--CCeEEEEeCCchhhh
Q 002169 717 FS--KW-------V------------------G--------E------SEKAVRSLFAKARAN--APSIIFFDEIDGLAA 753 (957)
Q Consensus 717 ~~--~~-------v------------------g--------~------~~~~ir~~f~~A~~~--~p~ILfiDEid~l~~ 753 (957)
.+ .. + + . ....+..+++..... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 00 00 0 0 0 011234444444332 388999999998753
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC---------hhhhCCCCcceecccCCCCHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID---------PALLRPGRFDRLLYVGPPNETDREEI 824 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id---------~aLlr~gRfd~~i~~~~P~~~er~~I 824 (957)
.. +.. ....+..+ .+. ..++.+|+++.....+. ..+ .||+...+.+++.+.++..++
T Consensus 152 ~~-----~~~-~~~~l~~~---~~~---~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 152 LR-----GVN-LLPALAYA---YDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CT-----TCC-CHHHHHHH---HHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHH
T ss_pred cC-----chh-HHHHHHHH---HHc---CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHH
Confidence 10 011 12222222 221 12566777765432111 112 246667889999999999999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHH
Q 002169 825 FRIHLRKIPCSSDVNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 825 l~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
++..+...+...+. ...+...+.|+. .-+..++.
T Consensus 218 l~~~~~~~~~~~~~-~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 218 LRRGFQEADIDFKD-YEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHHTCCCCC-HHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHHcCCCCCc-HHHHHHHhCCCH-HHHHHHHH
Confidence 98877644433332 378888999854 34544444
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-08 Score=111.95 Aligned_cols=143 Identities=21% Similarity=0.245 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHhchhh--------cHHHHHhc--CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 651 QREVKTQLMEAVEWPQK--------HQEAFKRI--GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 651 ~~~vk~~l~e~i~~~~~--------~~~~~~~l--~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
..++++.+ +.++|+.. ...+++++ +++++..++|+||||+||||++++|++..+..++.+..++- .
T Consensus 131 ~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~- 206 (377)
T 1svm_A 131 SADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R- 206 (377)
T ss_dssp CCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T-
T ss_pred hHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h-
Confidence 34455555 66776652 33445544 67777789999999999999999999998777655443321 0
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhh-hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAA-IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~-~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
....+ .......++++||++.+.. .+...... . ......+...+++ .+.|+++||+++.+ +
T Consensus 207 ---~~~~l------g~~~q~~~~l~dd~~~~~~~~r~l~~~~-~--~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~ 268 (377)
T 1svm_A 207 ---LNFEL------GVAIDQFLVVFEDVKGTGGESRDLPSGQ-G--INNLDNLRDYLDG-----SVKVNLEKKHLNKR-T 268 (377)
T ss_dssp ---HHHHH------GGGTTCSCEEETTCCCSTTTTTTCCCCS-H--HHHHHTTHHHHHC-----SSCEEECCSSSCCE-E
T ss_pred ---HHHHH------HHhcchhHHHHHHHHHHHHHHhhccccC-c--chHHHHHHHHhcC-----CCeEeeccCchhhH-H
Confidence 01111 1223345789999998764 22111110 0 0012334445554 34578899999999 7
Q ss_pred hhhCCCCcceecccCC
Q 002169 800 ALLRPGRFDRLLYVGP 815 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~ 815 (957)
++++|||++..++...
T Consensus 269 alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 269 QIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ECCCCEEEEECSCCCC
T ss_pred HhhcCcccChhHHhhc
Confidence 9999999998887754
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-08 Score=86.77 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=52.9
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
-.+|+.++|.+||+.+++++.+. .+.+++.||..|.||+|+||.++|++|++.|+++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999998775 67789999999999999999999999999998763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.8e-08 Score=99.76 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=46.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccch-HHHHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
+.+++|+||||||||++|++++..+ +.+++.++++++...+.... ...+..++..... +.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 3789999999999999999999887 56777777766544322110 0011223333332 359999999754
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-07 Score=103.11 Aligned_cols=189 Identities=24% Similarity=0.338 Sum_probs=115.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccccc----
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNY---- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~~---- 370 (957)
.+.|.......+.+.+...- .....|+++|++||||+++|+++....+.. |+.++|..+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~l 199 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESEL 199 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHH
T ss_pred cccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHh
Confidence 45666666666655543221 234569999999999999999999877543 99999987643211
Q ss_pred -----chh---HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--cc-------CCCeE
Q 002169 371 -----GES---EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CR-------TDGVL 433 (957)
Q Consensus 371 -----ge~---e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~-------~~~v~ 433 (957)
|.. ...-...|+.|.. .+||||||+.+. ..+...|+..++.- .. .-++.
T Consensus 200 fg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 200 FGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred cCccccccCCcccccCChHhhcCC---CeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 000 0001224555544 389999999883 34566778777642 11 12577
Q ss_pred EEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHH----HHHHHHHHcC----C---CCCCChHHHHHHHHHc
Q 002169 434 VIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQR----LEILHALLSG----M---EHSLLDSEVEYLSMAT 495 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r----~~Il~~~l~~----~---~~~l~~~~l~~La~~t 495 (957)
+|++||.. +...+ ..|+|.. .+.+..|...+| ..+++.++.+ . ...+++..++.|..+.
T Consensus 266 ii~at~~~--l~~~v-~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 266 VISATNKN--LEEEI-KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEEEESSC--HHHHH-HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EEEecCCC--HHHHH-HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99999852 33322 2345533 345556655554 3344443322 2 2346788888887766
Q ss_pred CCCcHHHHHHHHHHHHH
Q 002169 496 HGFVGADLAALCNEAAL 512 (957)
Q Consensus 496 ~g~~gaDi~~l~~~A~~ 512 (957)
-.-+.++++++++.|..
T Consensus 343 wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVI 359 (368)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 44456888888887654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-07 Score=100.17 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=110.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc-----c--c
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV-----S--Q 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~-----~--~ 368 (957)
+.+.|-+.+.+.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++.... + .
T Consensus 13 ~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHH
Confidence 457899988887776 411 4799999999999999999999887777788765430 0 0
Q ss_pred ccch---------------------------------------hHHHHHHHHHHHhcc--CCeEEEEcCccccccCCcCC
Q 002169 369 NYGE---------------------------------------SEQALHEVFDSASQS--APAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 369 ~~ge---------------------------------------~e~~i~~vf~~a~~~--~p~IL~IDEiD~l~~~~~~~ 407 (957)
.... ....+..+++..... .|.+|+|||++.+.......
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0000 001223344333322 38899999999886421111
Q ss_pred CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh-----hh--CCCCcceeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 408 GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA-----LR--RPGRLDREIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 408 ~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a-----l~--r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
+...|..+++. ..++.+|++++....+... .. -.+|+...+.++..+.++..+++...+...+
T Consensus 157 -------~~~~l~~~~~~---~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~ 226 (357)
T 2fna_A 157 -------LLPALAYAYDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD 226 (357)
T ss_dssp -------CHHHHHHHHHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHc---CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC
Confidence 11222223332 1367777777653222211 00 1236666799999999999999988765433
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALC 507 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~ 507 (957)
....+. ..+...+.|+.. -+..++
T Consensus 227 ~~~~~~--~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 227 IDFKDY--EVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp CCCCCH--HHHHHHHCSCHH-HHHHHH
T ss_pred CCCCcH--HHHHHHhCCCHH-HHHHHH
Confidence 333332 777888888654 344443
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=82.35 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
|.|+.++|.+||+.+++++... .+.+++.||..|.||+|+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998765 6778999999999999999999999999999876
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-06 Score=93.68 Aligned_cols=190 Identities=19% Similarity=0.256 Sum_probs=112.2
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc----
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF---- 717 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~---- 717 (957)
...-+.++|.++..+.|.+.+.. ...++++||+|+|||++++.+++..+ .+.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34456788999988888777641 15799999999999999999999875 5555543211
Q ss_pred --------c---ccccc---------------------hHHHHHHHHH----HHHhCCCeEEEEeCCchhhhhcCCCCCC
Q 002169 718 --------S---KWVGE---------------------SEKAVRSLFA----KARANAPSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 718 --------~---~~vg~---------------------~~~~ir~~f~----~A~~~~p~ILfiDEid~l~~~r~~~~~~ 761 (957)
. ..++. ....+..+++ .+....|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 0 00000 0011222222 22222389999999998753100
Q ss_pred CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC---------ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC
Q 002169 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI---------DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI 832 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i---------d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~ 832 (957)
.....++..+-..++.. .++.+|+++.....+ ...+. ||+...+.+++.+.++..++++..+...
T Consensus 146 -~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 146 -RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp -TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred -cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 01223333333333322 366677765432111 11222 4666688999999999999998877655
Q ss_pred CCC-CcccHHHHHHHccCCcHHHHHHHHH
Q 002169 833 PCS-SDVNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 833 ~~~-~~~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
+.. .+.....+...+.|+. .-+..++.
T Consensus 220 ~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 220 NLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp TCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 433 2345677888888854 34444443
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=96.00 Aligned_cols=126 Identities=20% Similarity=0.333 Sum_probs=80.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH--------cC-CcEEEEeccccccccc----------chhHH--HHHHHHHHH--hc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHD--------SG-VNLFTVNGPEVVSQNY----------GESEQ--ALHEVFDSA--SQ 386 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~--------l~-~~~i~i~~~~l~~~~~----------ge~e~--~i~~vf~~a--~~ 386 (957)
..+|++|+||||||++|...+.. .| .+++..+..++.-... ..... .....++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46789999999999999886533 24 5555566554433221 00000 012233331 23
Q ss_pred cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCC
Q 002169 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPS 464 (957)
Q Consensus 387 ~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~ 464 (957)
...+||+|||++.+.+.+....+.. .++..+.. .+..+..+|++|++++.++.+++. |++..+++..|.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~------rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP------ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC------HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred cCceEEEEEChhhhccCccccchhH------HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 4578999999999976553222211 24455543 235567889999999999999998 999888887754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-07 Score=106.65 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=79.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
++++++++.++|+||||+||||+++++++..+..++.+..++- .....+..+| +..++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3588999999999999999999999999988776554333220 0111222222 345789999998875
Q ss_pred -CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecC
Q 002169 403 -ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAV 462 (957)
Q Consensus 403 -~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~ 462 (957)
.+.-...... .....+.+.+++ .+.|++++|+++.+ +++.+|||++..+....
T Consensus 231 ~~r~l~~~~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLPSGQGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCCCCSHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhccccCcc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2221111110 012344555554 45678899999999 78999999988776643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=96.67 Aligned_cols=70 Identities=31% Similarity=0.421 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhH-HHHHHHHHHHhccCCeEEEEcCcccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESE-QALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e-~~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
+.+++|+||||||||++|++++..+ +..++.++++++......... ..+..+++... .+.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3799999999999999999999877 667888888776543211100 01122233322 2359999999765
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=82.05 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 464 ~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++|.+||+.+++++++. .+.+++.||..|+||+|+||.++|++|++.|+++
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 5678999999999998876 6788999999999999999999999999999986
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.9e-08 Score=105.29 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC----CcEEEEeCCCcccccccch-HHHHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG----LNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~----~~~i~v~~~~l~~~~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
...+++|+||||||||+||+++|.++. .+++.+..++++..+.... .......+.... .+.+|||||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 357899999999999999999998654 6777777766544322111 111122233332 2359999999754
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-07 Score=95.89 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=79.8
Q ss_pred CcceeeCCCCChhhHHHHHHHHH--------hC-CcEEEEeCCCcccccc----------cc-----hHHHHHHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASE--------AG-LNFLAVKGPELFSKWV----------GE-----SEKAVRSLFAKAR 736 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~--------~~-~~~i~v~~~~l~~~~v----------g~-----~~~~ir~~f~~A~ 736 (957)
.-.+++|+||+|||++|..++.. .| .+++..+..++.-.+. .. ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 35789999999999999886433 34 5665666665533221 11 112222222112
Q ss_pred hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPP 816 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P 816 (957)
.+..+||+|||++.+.+.+.... +.. .++..+..- ...+.-||++|+.++.++.++++ |++..++++.|
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~---e~~-----rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS---KIP-----ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC---CCC-----HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCccccc---hhH-----HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 23467999999999875542211 111 255555532 23466788889989999999988 99988888775
Q ss_pred CHH
Q 002169 817 NET 819 (957)
Q Consensus 817 ~~~ 819 (957)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-06 Score=85.77 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
.+.|+||+|+|||||++++++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886544
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-07 Score=79.27 Aligned_cols=53 Identities=23% Similarity=0.408 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 464 ~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++|.+||+.+++++++. ++.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6789999999999998876 6778999999999999999999999999888654
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.26 E-value=9e-07 Score=90.90 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCC
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
+++..++++||||||||||++|.++|+.+.-.++.+..+. ..+ .++.+. ...|++|||+|.-
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~--~~kIiiLDEad~~---- 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLT--DTKVAMLDDATTT---- 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGT--TCSSEEEEEECHH----
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccC--CCCEEEEECCCch----
Confidence 4555678999999999999999999999865443221100 000 011111 2349999999732
Q ss_pred cCCCchHHHHHHHHHHHHhhccc-----cC------CCeEEEEecCCC---CCchhhhhCCCCcceeeeecCC
Q 002169 405 KDGGEELSQRMVATLLNLMDGVC-----RT------DGVLVIAATNRP---DSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l~-----~~------~~v~vI~ttN~~---~~ld~al~r~gRfd~~I~i~~P 463 (957)
..+.+...+.+.+++.. .. ....+|.|||.. +..-+.+.+ |+. ++.|+.|
T Consensus 116 ------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 116 ------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp ------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred ------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 12333445677777731 01 234788899863 233356666 663 3555533
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-07 Score=98.12 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccccchh-HHHHHHHHHHHhccCCeEEEEcCcccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGES-EQALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~~ge~-e~~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
.+.+++|+||||||||+||+++|..+ +..++.+++++++....... ......+++... .+.+|+|||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 36899999999999999999999765 46778888776654322110 111122222222 3469999999654
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=96.44 Aligned_cols=200 Identities=15% Similarity=0.076 Sum_probs=111.8
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHH-HHHcCCcEEEEec--c---ccccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC-AHDSGVNLFTVNG--P---EVVSQNY 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaral-A~~l~~~~i~i~~--~---~l~~~~~ 370 (957)
.|.|.+.+|..|.=.+ ....- .++..-+|||.|+||| ||++|+++ +..+....+. .+ + .+.....
T Consensus 214 pI~G~e~vK~aLll~L----~GG~~---k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQL----FSCVG---KNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLRRTELTDLTAVLK 284 (506)
T ss_dssp CSTTCHHHHHHHHHHH----TTCCS---SGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGGGCCHHHHSEEEE
T ss_pred ccCCCHHHHHHHHHHH----cCCcc---ccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCCCCCccCceEEEE
Confidence 3788877655443331 11000 0222348999999999 99999999 7766553332 22 1 1111100
Q ss_pred ch--hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------ccCCCeEEEEecCCC
Q 002169 371 GE--SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------CRTDGVLVIAATNRP 441 (957)
Q Consensus 371 ge--~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------~~~~~v~vI~ttN~~ 441 (957)
+. .... ...+..|.. .++|+||++.+. ......|++.|+.- .-..++.||+|+|+.
T Consensus 285 ~~tG~~~~-~G~l~LAdg---Gvl~lDEIn~~~-----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALR-AGAAVLADG---GILAVDHLEGAP-----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEE-ECHHHHTTT---SEEEEECCTTCC-----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred cCCCcccC-CCeeEEcCC---CeeehHhhhhCC-----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00 0000 011223333 499999998773 34566788887752 113468999999987
Q ss_pred C-----------CchhhhhCCCCcceee-eecCCCHHH-------------HHHHHHHHHc--CCCCCCChHHHHHHHH-
Q 002169 442 D-----------SIEPALRRPGRLDREI-EIAVPSPAQ-------------RLEILHALLS--GMEHSLLDSEVEYLSM- 493 (957)
Q Consensus 442 ~-----------~ld~al~r~gRfd~~I-~i~~P~~~~-------------r~~Il~~~l~--~~~~~l~~~~l~~La~- 493 (957)
+ .|++++++ |||-.+ .++.|+.+. ..+.+. +.+ .....+++...+++..
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHH
Confidence 5 78889998 998743 445555433 222222 222 3344556655444331
Q ss_pred ----------------HcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 494 ----------------ATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 494 ----------------~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
...|.+.+.+.++++-|...|.-+.+....
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 123678888999999887777766655433
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-06 Score=83.74 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC---------------------------------cccccccc--hHH
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE---------------------------------LFSKWVGE--SEK 726 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~---------------------------------l~~~~vg~--~~~ 726 (957)
.+.|+||||+||||++++|++.++..+.-....+ ...++... ..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 3789999999999999999998764332111100 01111111 123
Q ss_pred HHHHHHHHH-----HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC--Ch
Q 002169 727 AVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI--DP 799 (957)
Q Consensus 727 ~ir~~f~~A-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i--d~ 799 (957)
..+..+..| ....|.+|++||++-.. .........+...++. .+..+|++||+.+.. -.
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~----------~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME----------LFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG----------GGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcc----------cCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHH
Confidence 345566664 67889999999954221 1223344556666654 245566777632222 22
Q ss_pred hhhCCCCc-ceecccCCCCHH
Q 002169 800 ALLRPGRF-DRLLYVGPPNET 819 (957)
Q Consensus 800 aLlr~gRf-d~~i~~~~P~~~ 819 (957)
.+.+ |- .+++.+...+.+
T Consensus 148 ~i~~--r~~~~i~~~~~~~r~ 166 (178)
T 1ye8_A 148 EIRR--LPGAVLIELTPENRD 166 (178)
T ss_dssp HHHT--CTTCEEEECCTTTTT
T ss_pred HHHh--cCCcEEEEecCcCHH
Confidence 3444 31 135666555543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-06 Score=89.04 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=61.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
.+..++++||||||||||++|.++|+.+....+.+.... ...| +..+ ....|++|||+|.-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~-s~f~-----------l~~l--~~~kIiiLDEad~~----- 115 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST-SHFW-----------LEPL--TDTKVAMLDDATTT----- 115 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS-SCGG-----------GGGG--TTCSSEEEEEECHH-----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc-chhh-----------hccc--CCCCEEEEECCCch-----
Confidence 444567999999999999999999999865433221100 0001 0111 12349999999832
Q ss_pred CCCCCCcchHHHH-HHHHHHHhccc------cC-----CcEEEEEecCCC---CCCChhhhCCCCcceecccC
Q 002169 757 KESDGVSVSDRVM-SQLLVELDGLH------QR-----VNVTVIAATNRP---DKIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 757 ~~~~~~~~~~~v~-~~LL~~ld~~~------~~-----~~v~VI~aTN~~---~~id~aLlr~gRfd~~i~~~ 814 (957)
..+.+ ..+-+.|++.. .+ ...-+|+|||.. +..-+.|.+ |+. .+.|+
T Consensus 116 --------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~ 177 (212)
T 1tue_A 116 --------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFP 177 (212)
T ss_dssp --------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECC
T ss_pred --------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcC
Confidence 11222 23445566631 11 123578899864 223356777 763 55665
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=88.40 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CC-cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCch
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GL-NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDG 750 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~-~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~ 750 (957)
....+|||||+|+||++.++.|+..+ +. ++..+... + ...++.+++.+. .+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45679999999999999999998765 22 22222111 1 123455555543 34567999999996
Q ss_pred -hhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC------CCChhhhCCCCcceecccCCCCHHHHHH
Q 002169 751 -LAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD------KIDPALLRPGRFDRLLYVGPPNETDREE 823 (957)
Q Consensus 751 -l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~------~id~aLlr~gRfd~~i~~~~P~~~er~~ 823 (957)
+. ....+.|+..++.. ..++++|++|+.++ .+-+++.+ |+ .++.+.+++..+...
T Consensus 88 kl~-------------~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPN-------------AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCC-------------TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCC-------------hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 52 23456788888754 33566666665543 35567777 65 578899999999999
Q ss_pred HHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 824 IFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 824 Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.++..+++.++.-+ ..+..+++.+.| +.+++.+.++..+..+ +...||.++++..+......
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~-----~~~~It~e~V~~~~~~~~~~ 212 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW-----PDGKLTLPRVEQAVNDAAHF 212 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC-----TTCEECHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHhhhhcC
Confidence 99998887775433 345667777776 5566666665554432 23468888887776665543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.8e-06 Score=87.46 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc--------cccc---------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~--------~vg~--------------- 723 (957)
++.+..-+.|+||||+||||++++|+... +...+.++....... ..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 45555569999999999999999999854 223666666442110 0000
Q ss_pred h----HHHHHHHHHHHH-----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 724 S----EKAVRSLFAKAR-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 724 ~----~~~ir~~f~~A~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
. ...+..+.+.+. ...|.+|+|||+..+.+......+......+.+.+++..+..+....++.||++||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 0 011223333333 5689999999999886553222110011112233445555444334478899999965
Q ss_pred CC
Q 002169 795 DK 796 (957)
Q Consensus 795 ~~ 796 (957)
+.
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 54
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=91.47 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHHHhC------CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARAN------APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~------~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|... .|.+|++||+.+.++. ....+++..+..+....+..||++||+.+.
T Consensus 149 Rv~iAraL~~~~~~~~~p~lLllDEPts~LD~------------~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 149 RVQLARVLAQLWQPQPTPRWLFLDEPTSALDL------------YHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEECCCCSSCCH------------HHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCccccCCH------------HHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 6778888887 9999999999865432 333344455554444456789999998754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.09 E-value=8e-06 Score=85.79 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH--c-------CCcEEEEeccccccc--------cc-----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD--S-------GVNLFTVNGPEVVSQ--------NY----------------- 370 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~--l-------~~~~i~i~~~~l~~~--------~~----------------- 370 (957)
|++++..++|+||||+|||||++.++.. + +...+.+++.+.... ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 6888999999999999999999999984 3 445677776541100 00
Q ss_pred --chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHH--HHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 371 --GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 371 --ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~--~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
.+....+..+.+.+....|.+|+|||+..+....-.+..+.. ++....++..+..+....++.||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 011112222333444567999999998877643211101111 222444444444444445678888876543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.9e-06 Score=89.49 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46778899999999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.5e-06 Score=95.10 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 46778899999999999999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-06 Score=93.34 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....++..+..+....+.+||++||+.+.+
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDP------------MGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCH------------HHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHcCCCEEEEECccccCCH------------HHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 67788888999999999999976543 2223344444443312267899999998764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=82.53 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=68.4
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc--c-------------------cccc--hHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS--K-------------------WVGE--SEKAVRSLF 732 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~--~-------------------~vg~--~~~~ir~~f 732 (957)
++++..-++|+||||+|||++++.+|...+.+.+.++...-+. . ++.. .....+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4566666999999999999999999986677777777654110 0 0000 011122233
Q ss_pred HHHH--hC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 733 AKAR--AN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 733 ~~A~--~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+.++ .. .|.+|+|||+..+.+..... ....+.+..++..|..+....++.||+++|.....
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~ 159 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENR----SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDS 159 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGS----STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCch----HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcC
Confidence 3322 22 48999999999886442111 11123334444444444333456777888765543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.5e-06 Score=92.82 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 46788899999999999999999999998764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.1e-06 Score=84.55 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccccc-c-------c-----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVVSQ-N-------Y----------------- 370 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~~~-~-------~----------------- 370 (957)
|++++..+.|+||+|+|||||++.++...- ...+.+++.+.... . .
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 788899999999999999999999998542 23566665432110 0 0
Q ss_pred --chhHHHHHHHHHHHh-----ccCCeEEEEcCccccccCCcCCCchHHH--HHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 371 --GESEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEELSQ--RMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 371 --ge~e~~i~~vf~~a~-----~~~p~IL~IDEiD~l~~~~~~~~~~~~~--~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.+....+..+.+.+. ...|.+|+|||+.........+.+...+ +....++..+..+....++.||++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 000111222233333 5679999999976654322222112222 2233455555554444577888888755
Q ss_pred CC
Q 002169 442 DS 443 (957)
Q Consensus 442 ~~ 443 (957)
+.
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 44
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.4e-06 Score=87.14 Aligned_cols=55 Identities=25% Similarity=0.284 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.||++||+.+.++. .....++..+..+....+.+||++||+++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDS------------KTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 67788888899999999999976543 22333444444443333678999999764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.4e-07 Score=95.37 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=28.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4677889999999999999999999999765
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.99 E-value=7.2e-06 Score=92.52 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-++ .....+++.+|..+....+..+|++||+.+.
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD------------~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLD------------AALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSC------------HHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCC------------HHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 7778888889999999999986543 2333445555555444447889999998765
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-06 Score=85.18 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHH----HHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDR----VMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~----v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.-+..+++|....|.+|++||+.+.++.+........+... ....+...+..+... +..+|++||+++.+
T Consensus 87 g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 87 ARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 3344667788888899999999999887655221111122222 334455555555434 67889999977653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.8e-06 Score=84.24 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=62.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc--------------c------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK--------------W------------------ 720 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~--------------~------------------ 720 (957)
++.+..-++|+||||+||||+++.++... +...+.+........ +
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 34555668999999999999999998653 444444443221000 0
Q ss_pred -c---cchHHHHHHHHHHHHhCCCe--EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 721 -V---GESEKAVRSLFAKARANAPS--IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 721 -v---g~~~~~ir~~f~~A~~~~p~--ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
. .......+.+.+.+....|. +|+|||+..+.... .....+++. .+..+....++.||++||..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d------~~~~~~~~~----~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK------PAMARKISY----YLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC------GGGHHHHHH----HHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC------HHHHHHHHH----HHHHHHHhCCCeEEEEeccC
Confidence 0 01122233444555556788 99999999875211 112233333 33333233478899999876
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.98 E-value=8.2e-06 Score=91.49 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..|..+....+.+||++||+.+.
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~------------~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDP------------ATTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 77788888999999999999966533 333345555555444447889999998765
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-06 Score=92.69 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....+++.++..+....+.++|++||+.+.
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~------------~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDE------------QLRRQIREDMIAALRANGKSAVFVSHDREE 201 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 77788999999999999999866543 222233333333323347889999998764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=80.99 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE 364 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~ 364 (957)
|+.++.-++|+||||+||||+++.+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 6888999999999999999999999985566777777543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=84.49 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=66.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH--h-------CCcEEEEeCCCcccc--------ccc---------------c
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE--A-------GLNFLAVKGPELFSK--------WVG---------------E 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~--~-------~~~~i~v~~~~l~~~--------~vg---------------~ 723 (957)
++++..-++|+||||+|||++++.+|.. . +...+.++..+.+.. .++ .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556666999999999999999999985 2 456777776552110 000 0
Q ss_pred hHH----HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 724 SEK----AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 724 ~~~----~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
... .+..+.+.+....|.+|+|||+..+.+..-... ..... +.+..++..+..+....++.||+++|.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 111 122234444556899999999998864321100 01121 1244455555544444478888888865543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.96 E-value=8.6e-06 Score=91.32 Aligned_cols=112 Identities=22% Similarity=0.335 Sum_probs=70.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc------------------------c-cc-----
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS------------------------Q-NY----- 370 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~------------------------~-~~----- 370 (957)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++.. . .+
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 4678899999999999999999999999766332 13344332210 0 00
Q ss_pred ------c----hhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 371 ------G----ESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 371 ------g----e~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
+ +....+.++++ .|....|.||++||-- +..+..
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT----------s~LD~~ 197 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT----------SALDPA 197 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTT----------TTSCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC----------ccCCHH
Confidence 0 11223334443 3556779999999942 122334
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
....+++++..+....+..||++|+..+.+
T Consensus 198 ~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 198 TTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 455666777766555578889999765443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.95 E-value=7.4e-06 Score=91.76 Aligned_cols=32 Identities=41% Similarity=0.520 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678899999999999999999999998764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=81.99 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc--------------c------------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ--------------N------------------ 369 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~--------------~------------------ 369 (957)
|+.++..++|+||||+|||||++.++..+ +..++.++....... .
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 67889999999999999999999999654 445554443210000 0
Q ss_pred ----cchhHHHHHHHHHHHhccCCe--EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 370 ----YGESEQALHEVFDSASQSAPA--VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 370 ----~ge~e~~i~~vf~~a~~~~p~--IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
..........+.+.+....|. +|+|||+..+.... ...... ++..+..+....++.+|++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d----~~~~~~----~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK----PAMARK----ISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC----GGGHHH----HHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC----HHHHHH----HHHHHHHHHHhCCCeEEEEeccC
Confidence 001223333344444556788 99999998775321 111223 33334333334577888888765
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.3e-06 Score=91.62 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 36678899999999999999999999998764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=9.5e-06 Score=91.47 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 46778899999999999999999999998663
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.4e-06 Score=91.47 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 46678899999999999999999999998763
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=6.5e-06 Score=87.08 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46788999999999999999999999997653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=83.51 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999997764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.90 E-value=9.4e-06 Score=91.59 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 36678899999999999999999999998764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=84.24 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.+|++||+.+.++. .....++..+..+... +..||++||+.+
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~------------~~~~~~~~~l~~l~~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDS------------ANTKRVMDIFLKINEG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCH------------HHHHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 66678888889999999999866543 2223344444443333 678999999754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=79.96 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=64.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHH------------HHHHcCCcE--EEEec------------------cccccc-cc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARL------------CAHDSGVNL--FTVNG------------------PEVVSQ-NY 370 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLara------------lA~~l~~~~--i~i~~------------------~~l~~~-~~ 370 (957)
+.+.+++-+.|+||+|+|||||+++ +.+.+...- ..+.+ ..+... +.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV 83 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 5567888999999999999999994 433321100 00000 000000 00
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCc----cccccCCc--CCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDEL----DAIAPARK--DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEi----D~l~~~~~--~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
....++-+-.+..+....|.+|++||- |.-...|. ......-.+....+...+..+... +..+|.+|+..+.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 011111122344555677999999993 32222121 112233334567777787777555 67788888776544
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.8e-05 Score=88.90 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDA------------LLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCH------------HHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 67788888999999999999876543 233344444444433336789999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=85.69 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.. ....++..+..+... +..||++||+.+.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~------------~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSALDPE------------MVGEVLSVMKQLANE-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHH------------HHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHH------------HHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 666888888999999999999765432 222333344333333 6789999997654
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.5e-05 Score=82.31 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CC-c--EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GV-N--LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDEL 397 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~-~--~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEi 397 (957)
....+|||||+|.||++.++.++..+ +. + .+.+++ +..++.+++.+. -....|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 35578999999999999999998754 32 2 222221 122344444432 334679999999
Q ss_pred cc-cccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC------CCchhhhhCCCCcceeeeecCCCHHHHHH
Q 002169 398 DA-IAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP------DSIEPALRRPGRLDREIEIAVPSPAQRLE 470 (957)
Q Consensus 398 D~-l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~------~~ld~al~r~gRfd~~I~i~~P~~~~r~~ 470 (957)
|. +.. ...+.|+..++.. ..++++|++++.+ ..+.+++.+ |. ..+++..++..+...
T Consensus 86 ~~kl~~-----------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 86 ENGPNA-----------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp SSCCCT-----------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCCCh-----------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 87 632 1345577777764 3466666666553 357788887 44 358899999999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 471 ILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 471 Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.++..+...+..+++..++.++..+.|
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 999999888888899999999987765
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=88.76 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...+..+....+.++|++||+.+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDA------------NLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 67788899999999999999865533 223334444444433336789999998654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=88.56 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDT------------QIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSH------------HHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 67788888999999999999865432 233344444444433336789999998654
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=85.95 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.5
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
+..+++||||||||||++|++||+.+..
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3557999999999999999999997654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=89.08 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 36678899999999999999999999998764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-05 Score=89.53 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDA------------KLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 67788888999999999999865533 233344444444433336789999998654
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-05 Score=83.19 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++..+++||||||||||++|+++|+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998655
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=8.3e-06 Score=91.42 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46678899999999999999999999998663
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=85.04 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 46778899999999999999999999998764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.84 E-value=4.9e-06 Score=86.74 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++.. ....+-+++..+. .. +..||++||+++.+
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~---------~~~~l~~~l~~~~---~~-g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDED---------SKHKVLKSILEIL---KE-KGIVIISSREELSY 196 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTT---------THHHHHHHHHHHH---HH-HSEEEEEESSCCTT
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHH---------HHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 566777888889999999999766432 2233333334432 12 56788999988764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.5e-05 Score=83.66 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....++..+..+... +..||++||+.+.+
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAP------------GLAHDIFNHVLELKAK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCCSTT
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCH------------HHHHHHHHHHHHHHHC-CCEEEEEecCHHHH
Confidence 66688888899999999999976543 2223344444433333 67899999988765
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=85.29 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++.. ....++..|..+... +.+||++||+++.
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~------------~~~~l~~~l~~l~~~-g~tiiivtHd~~~ 208 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVL------------NAREVRKILKQASQE-GLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHH------------HHHHHHHHHHHHHHT-TCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHH------------HHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 667888888999999999999765432 222333333333222 6788999997654
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=97.82 E-value=4.5e-06 Score=73.30 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 466 AQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 466 ~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
++|.+||+.+++++++. .+.+++.+|..|+||+|+||.++|++|++.++++
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 46899999999988764 5677899999999999999999999999999876
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.8e-05 Score=83.49 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=72.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc----------------ccchhHHHHHHHHHHHh
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ----------------NYGESEQALHEVFDSAS 385 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~----------------~~ge~e~~i~~vf~~a~ 385 (957)
|+.++.-++|+||||+|||||+..++..+ +..++++++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 67889999999999999999999998764 556777776543221 01122222322222333
Q ss_pred ccCCeEEEEcCccccccC-C--cCCCch---HHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 386 QSAPAVVFIDELDAIAPA-R--KDGGEE---LSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 386 ~~~p~IL~IDEiD~l~~~-~--~~~~~~---~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...+.+++||.+..+.+. . ...++. ...+.+.+++..|..+....++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467899999999888751 1 111111 2345566777777777666677777764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.80 E-value=1.7e-05 Score=88.66 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. .....+...|..+....+.++|++||+.+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~------------~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDP------------RTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCH------------HHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66788888899999999999865433 233344444444433346789999998654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.1e-05 Score=90.52 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++.. ... ++...|..+....+.++|++||+.+.
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~---------~r~---~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDAR---------MRD---SARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGG---------GHH---HHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHH---------HHH---HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888889999999999998766432 222 23333333322336789999998654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.79 E-value=2.5e-05 Score=83.62 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778899999999999999999999998764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=5.6e-06 Score=91.00 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|+||+|+|||||++++++.+.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46788999999999999999999999998764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.2e-05 Score=83.56 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.||++||+.+.++. .....++..|..+....+.+||++||+++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDA------------GNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCH------------HHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 66788888899999999999976533 23334455555443333678899999764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.77 E-value=2.3e-05 Score=88.41 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDA------------KLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCH------------HHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 66788888999999999999866533 223334444444333336789999998654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=85.75 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++. .....++..+..+....+..||++||+.+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~------------~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDL------------KTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCH------------HHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66788888899999999999866533 222233333333322225678899997654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.76 E-value=4.8e-05 Score=85.23 Aligned_cols=117 Identities=23% Similarity=0.337 Sum_probs=66.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----cc------------hhHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----YG------------ESEQALHEVFDSA 384 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----~g------------e~e~~i~~vf~~a 384 (957)
-|++++.-++|+||||+||||||..++... +..++.++...-.... .| ..+..+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367889999999999999999999888653 5566666654322110 01 1222222222233
Q ss_pred hccCCeEEEEcCccccccCCc---CCCch---HHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 385 SQSAPAVVFIDELDAIAPARK---DGGEE---LSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 385 ~~~~p~IL~IDEiD~l~~~~~---~~~~~---~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
....|.+|+||++..+.+... ..++. ...+...+++..+..+....++.||++++.
T Consensus 136 ~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~ 197 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINEL 197 (349)
T ss_dssp TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 355699999999998874211 00111 122233333333333323446677777654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.1e-05 Score=83.81 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.. ....+-+++..+ . . +.+||++||+++.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~---------~~~~i~~~l~~~---~-~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYE---------SEHVIMRNMHKI---C-K-GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHH---------HHHHHHHHHHHH---H-T-TSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHH---------HHHHHHHHHHHH---c-C-CCEEEEEeCCHHH
Confidence 566777888899999999999665432 222233333333 2 2 5688999998754
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=9.6e-06 Score=87.69 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999999997763
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.75 E-value=5.4e-05 Score=84.84 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhC---------CcEEEEeCCCcccc---------------------cccc--
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKGPELFSK---------------------WVGE-- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~v~~~~l~~~---------------------~vg~-- 723 (957)
++++..-+.|+||||+|||||++.++.... ...+.++..+.+.. ++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 455566699999999999999999998762 34577776543210 0000
Q ss_pred hHHHHHHHHH----HHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecC
Q 002169 724 SEKAVRSLFA----KARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 724 ~~~~ir~~f~----~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
.......+++ .+.. ..|.+|+|||+.++.+...... ..... ..+.+++..|..+....++.||+++|
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~--~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST--TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc--ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 0111122222 2333 5799999999999875431110 01111 23455555565554455788888888
Q ss_pred CCCCC
Q 002169 793 RPDKI 797 (957)
Q Consensus 793 ~~~~i 797 (957)
.....
T Consensus 285 ~~~~~ 289 (349)
T 1pzn_A 285 VQARP 289 (349)
T ss_dssp CC---
T ss_pred ccccc
Confidence 66543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=84.01 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+ +.+.|.||+|+|||||++++++.+.
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366788 8999999999999999999998764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6.1e-05 Score=85.76 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=70.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEecccccccc--------cc----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVSQN--------YG---------------- 371 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~~~--------~g---------------- 371 (957)
|+.++..++|+||||||||||++.++... +...+++++.+..... +|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 78899999999999999999999766322 2346777765421100 00
Q ss_pred ---hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchH--HHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 372 ---ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEEL--SQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 372 ---e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~--~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.....+..+.+.+....|.+|+||++-.+......+.... .++.+..++..|..+....++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222233334446789999999887765432211112 23444667777777665667888888864
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.7e-05 Score=83.10 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----------------ccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----------------VGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----------------vg~~~~~ir~~f~~A~ 736 (957)
|+.+..-++|+||||+|||||+..+|..+ +...+.++..+..... ....+..+..+-..++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35555569999999999999999998764 5566777765533210 0112222222222334
Q ss_pred hCCCeEEEEeCCchhhh-hc--CCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 737 ANAPSIIFFDEIDGLAA-IR--GKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~-~r--~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
...|.+++||.+..+.+ .. +..++. .....+.+.+++..|..+....++.||++.+-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 57789999999998865 11 111111 11335777788888877766667777776543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.71 E-value=2.3e-05 Score=83.53 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCe-------EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPS-------IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~-------ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|. +|++||+.+.++. .....++..|..+... +..||++||+.+.
T Consensus 134 rv~lAraL~~~p~~~~~~~~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tviivtHd~~~ 195 (249)
T 2qi9_C 134 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV------------AQQSALDKILSALSQQ-GLAIVMSSHDLNH 195 (249)
T ss_dssp HHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCcCCCCCeEEEEECCcccCCH------------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 6667778888899 9999999976543 2222344444433223 6688999998654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.70 E-value=7.8e-05 Score=83.50 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=68.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEecccccc-c-------c-------------cc--
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVS-Q-------N-------------YG-- 371 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~-~-------~-------------~g-- 371 (957)
.+++++.-+.|+||||+|||||++.++... +-..+++++.+... . . +.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 578899999999999999999999999876 23557777654210 0 0 00
Q ss_pred ----hhHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHH--HHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 372 ----ESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQ--RMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 372 ----e~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~--~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
...+.+..+-..+.. ..|.+|+|||+-++......+...... ..+..++..|..+....++.||++++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 001112111112222 579999999987665321111111121 234455555555544557788888765
Q ss_pred CC
Q 002169 441 PD 442 (957)
Q Consensus 441 ~~ 442 (957)
..
T Consensus 286 ~~ 287 (349)
T 1pzn_A 286 QA 287 (349)
T ss_dssp C-
T ss_pred cc
Confidence 43
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.3e-05 Score=85.45 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999998763
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.9e-05 Score=85.66 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE--EEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV--IAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V--I~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++.. ..+.+-.++..+. .. +..| |++||+.+.+
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~---------~~~~l~~~l~~l~---~~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFI---------ARESLLSILDSLS---DS-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHH---------HHHHHHHHHHHHH---HH-CTTCEEEEEESCGGGC
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHH---------HHHHHHHHHHHHH---HC-CCEEEEEEEecCHHHH
Confidence 666788888999999999999765432 2222333333332 22 3456 8899987654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.70 E-value=4.6e-05 Score=85.36 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc------------chHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG------------ESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg------------~~~~~ir~~f~~A~ 736 (957)
|+++..-++|+||||+|||++|..++... +...+.++...-.... .| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556669999999999999999998654 5566666654432211 11 11222222222344
Q ss_pred hCCCeEEEEeCCchhhhhcC---CCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRG---KESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~---~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
...|.+|+||++..+..... ..++. .....+.+.+++..|.......++.||+++|...
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 56799999999999873211 10010 0122345566666665444445777888776544
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.8e-05 Score=81.30 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678899999999999999999999998763
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.3e-05 Score=81.39 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=49.9
Q ss_pred HhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCc---ccc--------cccchHHHHHHHHHHHHhC
Q 002169 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPEL---FSK--------WVGESEKAVRSLFAKARAN 738 (957)
Q Consensus 673 ~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l---~~~--------~vg~~~~~ir~~f~~A~~~ 738 (957)
+++.+.+..-++|.||+|+||||+++++++... ..-+.+.+..+ ... .+|.....++..++.+...
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence 333444455589999999999999999998652 22233332211 100 1111223457788888888
Q ss_pred CCeEEEEeCCc
Q 002169 739 APSIIFFDEID 749 (957)
Q Consensus 739 ~p~ILfiDEid 749 (957)
.|.+|++||+.
T Consensus 98 ~p~illlDEp~ 108 (261)
T 2eyu_A 98 DPDVIFVGEMR 108 (261)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEeCCCC
Confidence 99999999995
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8.2e-05 Score=79.68 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678899999999999999999999997663
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=7.1e-05 Score=83.98 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCC-Cccc---------ccccchHHHHHHHHHHHHhCCCeEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGP-ELFS---------KWVGESEKAVRSLFAKARANAPSIIFF 745 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~-~l~~---------~~vg~~~~~ir~~f~~A~~~~p~ILfi 745 (957)
..-+++.||+|+||||+++++++.. +..++.+..+ ++.. ..++.........++.|....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3358999999999999999998875 3444444332 1111 011222234566888999999999999
Q ss_pred eCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 746 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 746 DEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
||+.. ......++.... .+..||+++|..+.+
T Consensus 203 DEp~d---------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRD---------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCS---------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred CCCCC---------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 99962 222333333322 255689999987654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.68 E-value=3.6e-05 Score=82.69 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999998764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.4e-05 Score=80.01 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....++..+..+... +.+||++||+++.+
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDR------------EGKTDLLRIVEKWKTL-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCCTTT
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCH------------HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 56677888889999999999976543 2223344444433333 67899999988764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.8e-05 Score=82.49 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....++..+..+.. .+.+||++||+++.
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAP------------ILVSEVFEVIQKINQ-EGTTILLVEQNALG 201 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCH------------HHHHHHHHHHHHHHH-TTCCEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCH------------HHHHHHHHHHHHHHH-CCCEEEEEecCHHH
Confidence 55677788889999999999976543 222233334433322 35678899997644
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3e-05 Score=85.10 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+++..-+.|+||+|+|||||+++|++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4455569999999999999999999765
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=7.7e-05 Score=82.63 Aligned_cols=115 Identities=16% Similarity=0.266 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEecccccc-c-------ccc----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVS-Q-------NYG---------------- 371 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~-~-------~~g---------------- 371 (957)
|++++.-++|+||||+|||++|..+|... +...++++...-.. . ..|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 68889999999999999999999999764 45677777654210 0 000
Q ss_pred hhH---HHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHH--HHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 372 ESE---QALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 372 e~e---~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~--~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
..+ ..+..+...+.. ..+.+|+||.+..+......+.++.. ...+.+++..|..+....++.||++.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011 122233333444 56899999999888643211111111 224455555555554555777777654
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=81.08 Aligned_cols=114 Identities=21% Similarity=0.316 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----------------cchhHHHHHHHHH-HH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----------------YGESEQALHEVFD-SA 384 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----------------~ge~e~~i~~vf~-~a 384 (957)
|++++..++|+||||+|||+||..+|... +..++.++...-.... ....+. +...++ .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~-~l~~l~~l~ 148 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ-ALEIMELLV 148 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHH-HHHHHHHHH
Confidence 67888999999999999999999888653 5667777754322111 011222 222333 23
Q ss_pred hccCCeEEEEcCccccccCCcCCC--ch----HHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 385 SQSAPAVVFIDELDAIAPARKDGG--EE----LSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 385 ~~~~p~IL~IDEiD~l~~~~~~~~--~~----~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
....+++|+||.+..+.+.....+ ++ ...+.+.+++..|..+....++.||++..
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 345689999999999875322111 01 22244455555555555566777777653
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=82.81 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.... .. ++..+..+. . +.+||++||+++.
T Consensus 147 rv~lAral~~~p~lllLDEPts~LD~~~~--------~~----i~~~l~~~~-~-~~tvi~vtH~~~~ 200 (243)
T 1mv5_A 147 RLAIARAFLRNPKILMLDEATASLDSESE--------SM----VQKALDSLM-K-GRTTLVIAHRLST 200 (243)
T ss_dssp HHHHHHHHHHCCSEEEEECCSCSSCSSSC--------CH----HHHHHHHHH-T-TSEEEEECCSHHH
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHH--------HH----HHHHHHHhc-C-CCEEEEEeCChHH
Confidence 56677888888999999999977654322 22 222333222 2 5688999997653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=82.36 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEeccccccc--------cc-----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVSQ--------NY----------------- 370 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~~--------~~----------------- 370 (957)
|++++.-++|+||||+|||++|..+|... +...++++....... ..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 68889999999999999999999999762 456777776542110 00
Q ss_pred -c-hhHHHHHHHHHHHhc--cCCeEEEEcCccccccCCcCCCchHH--HHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 371 -G-ESEQALHEVFDSASQ--SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 371 -g-e~e~~i~~vf~~a~~--~~p~IL~IDEiD~l~~~~~~~~~~~~--~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
. +....+..+...+.. ..+.+|+||.+..+......+.++.. ...+.+++..|..+....++.||++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 0 111112222233334 56889999999988743211111122 2234555555555555567777776643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=5.5e-05 Score=86.15 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc--------cccc---------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~--------~vg~--------------- 723 (957)
|+.+..-++|+||||+|||||++.++-.. +...+.++..+.+.. .+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666679999999999999999776332 234677776553211 0010
Q ss_pred -h---HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 724 -S---EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 724 -~---~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
. ...+..+.+.+....|.+|+|||+..+.+......++.....+.+.+++..|..+....++.||+++|...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 0 11122333444457899999999998765321111110111234466666676665566888999988643
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.64 E-value=6.2e-05 Score=80.87 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....++..+..+... +.+||++||+.+.
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDP------------ELVGEVLRIMQQLAEE-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHT-TCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCH------------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 55677788889999999999976543 2222333333333233 6678999997654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.64 E-value=4.9e-05 Score=80.59 Aligned_cols=31 Identities=29% Similarity=0.230 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667889999999999999999999999765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=78.68 Aligned_cols=56 Identities=29% Similarity=0.322 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....++..+..+....+..||++||+.+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDL------------ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCH------------HHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 66788888899999999999976543 222233344443333335688999997654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.8e-05 Score=82.45 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-++.. ....+.+++..+ .. +.+||++||+++.
T Consensus 163 Rv~lAraL~~~p~lllLDEPts~LD~~---------~~~~i~~~l~~l---~~--~~tviivtH~~~~ 216 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATSSLDSK---------TEYLFQKAVEDL---RK--NRTLIIIAHRLST 216 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCHH---------HHHHHHHHHHHH---TT--TSEEEEECSSGGG
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH---------HHHHHHHHHHHh---cC--CCEEEEEcCCHHH
Confidence 556777777889999999999765432 223333334433 22 4688999998764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.62 E-value=1.1e-05 Score=86.09 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678899999999999999999999998764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.3e-05 Score=80.21 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.. ....++..+..+.. .+..||++||+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~------------~~~~l~~~l~~l~~-~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDID------------ALKVVARGVNAMRG-PNFGALVITHYQRI 205 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHH------------HHHHHHHHHHHHCS-TTCEEEEECSSSGG
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHH------------HHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 445667777789999999999765432 22334444444332 36789999998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.59 E-value=5.4e-05 Score=82.10 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678899999999999999999999998763
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.7e-05 Score=79.28 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999998764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.5e-05 Score=90.41 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4678899999999999999999999999764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=81.41 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=71.2
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc-----------chHHHHHHHHHH-HH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG-----------ESEKAVRSLFAK-AR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg-----------~~~~~ir~~f~~-A~ 736 (957)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-...+ .| .....+...++. ++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566669999999999999999988654 5667777665432221 01 111222333333 33
Q ss_pred hCCCeEEEEeCCchhhhhcCCCC---CC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRGKES---DG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~~~~---~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
...+.+|+||.+..+.......+ +. .....+.+.+++..|..+....++.||++.+-
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 46788999999998864211110 00 01233567777777776656667777776543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00018 Score=77.49 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46778899999999999999999999997653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00015 Score=76.70 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh---ccccCCcEEEEEecCCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD---GLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld---~~~~~~~v~VI~aTN~~~~i 797 (957)
-|..+++|....|.||++||+.+.++. .....++..+. ... .+.+||++||+.+.+
T Consensus 134 qRv~lAraL~~~p~lllLDEPts~LD~------------~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 134 QRVSLARAVYSNADIYLFDDPLSAVDA------------HVGKHIFENVIGPKGML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCH------------HHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTG
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCH------------HHHHHHHHHHHHHHhhc--CCCEEEEEecChHHH
Confidence 366788888889999999999866533 23334555552 222 267899999987653
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.54 E-value=9.1e-05 Score=79.81 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++ ......++..+..+... +.+||++||+++.
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD------------~~~~~~l~~~l~~l~~~-g~tviivtHd~~~ 226 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLD------------IDALKVVADGVNSLRDG-KRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCC------------HHHHHHHHHHHHTTCCS-SCEEEEECSSGGG
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCC------------HHHHHHHHHHHHHHHhc-CCEEEEEeeCHHH
Confidence 5566777778899999999996643 33334555556655433 6789999998765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.9e-05 Score=85.56 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
+-|..+++|....|.||++||+.+-++. ....++...|.... .+.++|++||+.+.
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~------------~~~~~l~~~l~~~~--~~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDP------------VTYQIIRRTLKQAF--ADCTVILCEARIEA 216 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCH------------HHHHHHHHHHHTTT--TTSCEEEECSSSGG
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCH------------HHHHHHHHHHHHHh--CCCEEEEEEcCHHH
Confidence 3467888899999999999999876543 23334555555432 25678999998653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00016 Score=81.04 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=66.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----cc-----------hhHHHHHHHHHH-Hh
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----YG-----------ESEQALHEVFDS-AS 385 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----~g-----------e~e~~i~~vf~~-a~ 385 (957)
|++++..++|+||||+|||+||..+|... +..++.++...-.... .| .....+..+++. +.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57888999999999999999999888653 5677777764321110 00 111223333332 23
Q ss_pred ccCCeEEEEcCccccccCCc-C--CCch---HHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 386 QSAPAVVFIDELDAIAPARK-D--GGEE---LSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 386 ~~~p~IL~IDEiD~l~~~~~-~--~~~~---~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
...+.+|+||.+..+.+... . .++. ...+.+.+++..|..+....++.||++..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 45688999999998875221 0 0110 12233344444444443445677776653
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=76.93 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=27.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
++.+.+++.+.|.||+|+|||||++++++.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999986
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00011 Score=81.24 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=71.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc-----c---cc----------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK-----W---VG---------------- 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~-----~---vg---------------- 722 (957)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-+.. + .|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666669999999999999999998764 456677776543110 0 00
Q ss_pred chH---HHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 723 ESE---KAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 723 ~~~---~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
..+ ..+..+.+.++. ..+.+|+||++..+........ ....+ ..+.+++..|..+....++.||++.+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~--g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR--ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT--TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 011 112233344444 6789999999999875321110 11222 3466677777766555577787775533
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00025 Score=76.15 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+. +..+.|.||+|+|||||++++++.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 46678 8999999999999999999999876
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.49 E-value=3.2e-05 Score=83.04 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46788999999999999999999999998653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00021 Score=79.81 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc-----c---ccc---------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK-----W---VGE--------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~-----~---vg~--------------- 723 (957)
|+++..-++|+||||+|||++|..+|... +...+.++....+.. + .|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555568999999999999999998862 456667766543210 0 000
Q ss_pred -hH---HHHHHHHHHHHh--CCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 724 -SE---KAVRSLFAKARA--NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 724 -~~---~~ir~~f~~A~~--~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+ ..+..+...+.. ..+.+|+||.+..+....-.. ...... ..+.+++..|..+....++.||++++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 11 111222334444 678999999999987542110 011222 24666777676665566778887766443
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00017 Score=80.87 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=70.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc-----------chHHHHHHHHHH-HH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG-----------ESEKAVRSLFAK-AR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg-----------~~~~~ir~~f~~-A~ 736 (957)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-.... .| .....+..+++. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45666679999999999999999998654 5667777764332210 00 112233334432 34
Q ss_pred hCCCeEEEEeCCchhhhhcC---CCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRG---KESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~---~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
...+.+|+||.+..+..... ..++. .....+.+.+++..|..+....++.||++.+..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 56788999999998864221 00000 002234556667766655555577788765543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=80.95 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEecc-ccc--------cc-ccchhHHHHHHHHHHHhccCCeEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGP-EVV--------SQ-NYGESEQALHEVFDSASQSAPAVV 392 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~-~l~--------~~-~~ge~e~~i~~vf~~a~~~~p~IL 392 (957)
.++..+++.||+|+||||+++++++.+. ..++.+.-+ ++. .+ ..+.........+..+....|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 3455789999999999999999998762 334333211 111 10 111111234557778888999999
Q ss_pred EEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 393 FIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 393 ~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
++||+-. ......++... ..+..+|++++..+.+
T Consensus 201 llDEp~d-------------~e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRD-------------LETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCS-------------HHHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred ecCCCCC-------------HHHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 9999731 11222233332 2355788899887655
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=81.64 Aligned_cols=97 Identities=9% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCccc-----c---cccchHHHHHHHHHHHHhCCCeEEEEeCC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFS-----K---WVGESEKAVRSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~-----~---~vg~~~~~ir~~f~~A~~~~p~ILfiDEi 748 (957)
+...+++.||+|+||||++++|++... ...+.+.+...+. . ++.......+..++.|....|.+|++||+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 355699999999999999999999864 3566776543211 1 12112445678889999999999999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+- ++. +++..+. .++..+|++||..+
T Consensus 250 ~~~---------------e~~-~~l~~~~----~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 250 RSS---------------EAY-DFYNVLC----SGHKGTLTTLHAGS 276 (330)
T ss_dssp CST---------------HHH-HHHHHHH----TTCCCEEEEEECSS
T ss_pred ChH---------------HHH-HHHHHHh----cCCCEEEEEEcccH
Confidence 741 122 2344443 22345788888765
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00026 Score=74.76 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=28.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999999765
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00038 Score=75.74 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=31.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEe
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVN 361 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~ 361 (957)
+++.++.-++|.||||+|||||++.+|..+ |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 688999999999999999999999999765 43454444
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00034 Score=76.53 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=67.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccc----c------------chhHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQN----Y------------GESEQALHEVFD 382 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~----~------------ge~e~~i~~vf~ 382 (957)
-|+.++ -++|+||||+|||+|+-.++... +..++++++.+-.... . ...++..-.+.+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 467777 68999999999999987665433 5677788865422210 0 112222022222
Q ss_pred H---HhccCCeEEEEcCccccccCCcCCC---c-----hHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 383 S---ASQSAPAVVFIDELDAIAPARKDGG---E-----ELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 383 ~---a~~~~p~IL~IDEiD~l~~~~~~~~---~-----~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
. +....|.+|+||-+..+.+...-.+ + ....|..++.+..|..+....++.+|++-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 2 3456799999999999985322111 1 023355555555555555566777777653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00019 Score=77.54 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=61.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh--C-----------CcEEEEeCCCccccc------ccc-------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA--G-----------LNFLAVKGPELFSKW------VGE------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~--~-----------~~~i~v~~~~l~~~~------vg~------------- 723 (957)
++.+..-++|+||||+|||||++.++... + .+.+.+...+..... .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 34455569999999999999999998643 2 244455543321100 000
Q ss_pred --------------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 724 --------------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 724 --------------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+...+..+. +....|.+|+|||+..+.... ......+.+++..|..+....++.||+
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~d-------~~~~~~~~~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIEE-------ENASGPMAQVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCSC-------TTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred eEEeecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCCC-------cCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 011122222 223468999999999864321 112233344555555443344778999
Q ss_pred ecCCCCC
Q 002169 790 ATNRPDK 796 (957)
Q Consensus 790 aTN~~~~ 796 (957)
++|....
T Consensus 177 i~H~~~~ 183 (279)
T 1nlf_A 177 LHHASKG 183 (279)
T ss_dssp EEEC---
T ss_pred EecCCCc
Confidence 9886654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=87.01 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+-.+.. ....+.+.+..+. .+.++|++||+.+.
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~-----~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTK---------TEKSIQAAMWKLM-----EGKTSIIIAHRLNT 552 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHH---------HHHHHHHHHHHHH-----TTSEEEEESCCTTH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHH---------HHHHHHHHHHHHc-----CCCEEEEEecCHHH
Confidence 4677888888999999999999765432 2222233333332 25688999998875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00036 Score=74.95 Aligned_cols=52 Identities=17% Similarity=0.003 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. .....++..+..+.. .||++||+++.
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~L~~~~~----tviivtHd~~~ 187 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDA------------ARRHVISRYIKEYGK----EGILVTHELDM 187 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCH------------HHHHHHHHHHHHSCS----EEEEEESCGGG
T ss_pred HHHHHHHHHhCCCEEEEECCccccCH------------HHHHHHHHHHHHhcC----cEEEEEcCHHH
Confidence 66678888889999999999866432 233344445544422 78999998765
|
| >2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0004 Score=60.70 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHHhhccCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEc
Q 002169 190 QTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLY 262 (957)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~ 262 (957)
...++++|.||||.+||.|+++++|+.+.|.|.++.|. .++|+++|+|.+.
T Consensus 30 ~~~lk~~L~grPV~~GD~I~i~~~G~~i~F~Vv~t~P~----------------------~V~Vt~~T~I~i~ 80 (83)
T 2jv2_A 30 VDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPS----------------------PLRVEDRTKITLV 80 (83)
T ss_dssp HHHHHHHHTTSEECTTCEEEEEETTEEEEEEEEEEESS----------------------SEECCTTSEEEEC
T ss_pred HHHHHHHHCCCCccCCCEEEEeeCCCEEEEEEEEecCc----------------------cEEECCCcEEEEE
Confidence 57889999999999999999999999999999999883 5899999999984
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00034 Score=75.49 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
|+.++..++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999999998643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00073 Score=70.72 Aligned_cols=39 Identities=33% Similarity=0.380 Sum_probs=30.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.|+.++..++|+||||+|||+++..++... +..++.++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 478889999999999999999988776432 445555554
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=88.37 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+++++.+.|+||+|+|||||++++++..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999999765
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0012 Score=78.91 Aligned_cols=170 Identities=11% Similarity=0.154 Sum_probs=93.2
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHH-------h--CCcEEEEeCC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE-------A--GLNFLAVKGP 714 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~-------~--~~~~i~v~~~ 714 (957)
.-..++|.+...+.|.+.+... ....+-++++||+|+|||+||+.++.. . +.-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 3456899999999998877421 112345899999999999999999743 1 1223444332
Q ss_pred Cc---cccc----------------ccchHHHHHHHHHHHHh--CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 715 EL---FSKW----------------VGESEKAVRSLFAKARA--NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 715 ~l---~~~~----------------vg~~~~~ir~~f~~A~~--~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
+. .... .......+...+..... ..|.+|+||+++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 11 0000 00111222222322222 268899999997421 12
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
. .+ ..+..||+||........ .. +..-.+......+.++-.+++................++++.+.|..
T Consensus 252 ~---~l--~~~~~ilvTsR~~~~~~~--~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 K---AF--DSQCQILLTTRDKSVTDS--VM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp H---TT--CSSCEEEEEESCGGGGTT--CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred H---Hh--cCCCeEEEECCCcHHHHh--cC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2 22 225677777765432111 11 22111111246788888888887765321112335678888998854
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00043 Score=72.70 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH-HhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE-LDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~-ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.+|++||+.+.++. .....++.. +.... .+.+||++||+++.
T Consensus 137 qrv~lAral~~~p~lllLDEPts~LD~------------~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 137 ARISLARAVYKDADLYLLDSPFGYLDV------------LTEKEIFESCVCKLM--ANKTRILVTSKMEH 192 (229)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTSCH------------HHHHHHHHHCCCCCT--TTSEEEEECCCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCCH------------HHHHHHHHHHHHHhh--CCCEEEEEcCChHH
Confidence 366788888899999999999866533 223334443 23332 25688999997643
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.35 E-value=6.9e-05 Score=90.08 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=29.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 467889999999999999999999999987643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.35 E-value=6.3e-05 Score=90.16 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=29.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 367889999999999999999999999987643
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.34 E-value=2.5e-05 Score=83.05 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3667899999999999999999999999765
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=88.04 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-.+.. ..+ .+...+..+.. +.++|.+||+++.
T Consensus 488 r~~iAral~~~p~illlDEpts~LD~~---------~~~---~i~~~l~~~~~--~~tvi~itH~~~~ 541 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATSALDTE---------SER---AIQAALDELQK--NKTVLVIAHRLST 541 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH---------HHH---HHHHHHHHHcC--CCEEEEEecCHHH
Confidence 566778888899999999999765432 222 23333333322 5678899998754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=97.33 E-value=9.6e-05 Score=88.45 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+-.+.. ..+.+.+.+..+. . +.++|++||+.+.+
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~---~--~~t~i~itH~l~~~ 539 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLE---------SESIIQEALDVLS---K--DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHH---------HHHHHHHHHHHHT---T--TSEEEEECSSGGGT
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH---------HHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 667788888899999999999765432 2333333333332 2 35788899988753
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00047 Score=70.28 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=21.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l 353 (957)
..+.|+||+|+||||+++.+++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999999876
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00055 Score=74.90 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccc----ccc-----------chHHHH-HHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSK----WVG-----------ESEKAV-RSLFAK 734 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~----~vg-----------~~~~~i-r~~f~~ 734 (957)
|+.+. -++++||||+|||+|+-.++... +...+.++..+-+.. -.| .....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999988776543 556777777553321 001 011122 222222
Q ss_pred ---HHhCCCeEEEEeCCchhhhhc---CCCCCC-Cc--chHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 735 ---ARANAPSIIFFDEIDGLAAIR---GKESDG-VS--VSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 735 ---A~~~~p~ILfiDEid~l~~~r---~~~~~~-~~--~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++..+|.+|++|-|.++.+.. +..++. .+ ...|.+++.|..|.++....++.+|++-+-
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 355689999999999997421 111110 01 345677888777766666667877776543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00023 Score=88.85 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=59.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHH-----hCC----cEEEE----------eCCCcccccccchHHHHHHHHHHHH-hC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASE-----AGL----NFLAV----------KGPELFSKWVGESEKAVRSLFAKAR-AN 738 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~-----~~~----~~i~v----------~~~~l~~~~vg~~~~~ir~~f~~A~-~~ 738 (957)
...-++|.||+|+||||+.|.++.. .+. ....+ ...+.............+++...++ ..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 3445899999999999999998743 121 11111 1111111111222222223222222 57
Q ss_pred CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 739 ~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
.|++|++||+.+..+.. ....+...++..+. ...+..+|++||+.+...-
T Consensus 752 ~p~LlLLDEP~~GlD~~--------~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 752 SQSLVILDELGRGTSTH--------DGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp TTCEEEEESTTTTSCHH--------HHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGGH
T ss_pred CCCEEEEeCCCCCCCHH--------HHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHHH
Confidence 79999999998654321 12233334555442 2236789999999876543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=97.29 E-value=7.2e-05 Score=89.52 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 467889999999999999999999999987643
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00051 Score=74.67 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc----c--------c---------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL----F--------S--------------------- 718 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l----~--------~--------------------- 718 (957)
++.+..-++|.||||+||||+++.||... |.+.+.+....- . .
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 110 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 56666679999999999999999998764 434544433210 0 0
Q ss_pred ----------cccc-----chHHHHH-HHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH-HHHHHHHHHHhcccc
Q 002169 719 ----------KWVG-----ESEKAVR-SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDGLHQ 781 (957)
Q Consensus 719 ----------~~vg-----~~~~~ir-~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~-~v~~~LL~~ld~~~~ 781 (957)
-++. .+...++ .+.+.+....|.+|+|||+..+.... . .... ..+..++..|..+..
T Consensus 111 ~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~-~-----~~d~~~~~~~i~~~L~~la~ 184 (296)
T 1cr0_A 111 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS-G-----ESDERKMIDNLMTKLKGFAK 184 (296)
T ss_dssp HHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC-C-----CCCHHHHHHHHHHHHHHHHH
Confidence 0000 1111222 22233466789999999999875321 0 0111 233444455544433
Q ss_pred CCcEEEEEecCCC
Q 002169 782 RVNVTVIAATNRP 794 (957)
Q Consensus 782 ~~~v~VI~aTN~~ 794 (957)
..++.||++||..
T Consensus 185 ~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 185 STGVVLVVICHLK 197 (296)
T ss_dssp HHCCEEEEEEECC
T ss_pred HhCCeEEEEEecC
Confidence 4477889998874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00033 Score=82.94 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+-++. .....++..|..+.. .+..||++||+.+.
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~------------~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDI------------RQRLNAARAIRRLSE-EGKSVLVVEHDLAV 220 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHH-TTCEEEEECSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCH------------HHHHHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 377888999999999999999966533 223334444444433 26789999997654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00043 Score=73.69 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
++.+.+++.+.|.||+|+|||||++++++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 366788999999999999999999999986
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0001 Score=88.38 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|.||+|+|||||++++++...
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 46788999999999999999999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00028 Score=84.58 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+-.+.. ..+ .+...+.... .+.++|++||+.+.
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~---------~~~---~i~~~l~~~~--~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPI---------TEK---RILDGLKRYT--KGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHH---------HHH---HHHHHHHHHS--TTCEEEEEESCHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHH---------HHH---HHHHHHHHhC--CCCEEEEEecChHH
Confidence 3677888888999999999999765432 222 2333333332 25788999998753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=86.26 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-.+.. ..+.+.+.+..+. . +.++|.+||+++.
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~---~--~~tvi~itH~~~~ 541 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTE---------SERAIQAALDELQ---K--NRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHH---------HHHHHHHHHHHHH---T--TSEEEEECSCGGG
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHH---------HHHHHHHHHHHHh---C--CCEEEEEeccHHH
Confidence 566777878889999999999765432 2222333333332 2 5678899998764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00058 Score=77.10 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=48.8
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhC----CcEEEEeCC-Cc-ccc---cccc-----hHHHHHHHHHHHHhCCCe
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAG----LNFLAVKGP-EL-FSK---WVGE-----SEKAVRSLFAKARANAPS 741 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~----~~~i~v~~~-~l-~~~---~vg~-----~~~~ir~~f~~A~~~~p~ 741 (957)
...+...++|.||+|+||||++++|++... ..++.+..+ ++ ... ++.+ ....++..+..+....|.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 344555699999999999999999998653 333333322 11 000 1211 223446778888888999
Q ss_pred EEEEeCCc
Q 002169 742 IIFFDEID 749 (957)
Q Consensus 742 ILfiDEid 749 (957)
+|++||+.
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999995
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0004 Score=76.61 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------------C----CcEEEEecccccc-c----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------------G----VNLFTVNGPEVVS-Q---------------- 368 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------------~----~~~i~i~~~~l~~-~---------------- 368 (957)
|++++.-++|+||||+|||++|..+|... | ..+++++...-+. .
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 67888899999999999999999998652 2 4566777544210 0
Q ss_pred ----cc---chhH---HHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchH--HHHHHHHHHHHhhccccCCCeEEE
Q 002169 369 ----NY---GESE---QALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEEL--SQRMVATLLNLMDGVCRTDGVLVI 435 (957)
Q Consensus 369 ----~~---ge~e---~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~--~~~i~~~Ll~~ld~l~~~~~v~vI 435 (957)
++ ...+ ..+..+.+.+.. ..+.+|+||.+..+......+..+. ....+.+++..|..+....++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 0011 112223333334 5688999999988864321111111 123445556666555555677777
Q ss_pred EecC
Q 002169 436 AATN 439 (957)
Q Consensus 436 ~ttN 439 (957)
++..
T Consensus 254 ~~nq 257 (322)
T 2i1q_A 254 VTNQ 257 (322)
T ss_dssp EEEC
T ss_pred EECc
Confidence 7643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=74.34 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=30.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+.+.+++.|+|+|||||||||+++++|+.++..++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4566788999999999999999999999999887644
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00049 Score=68.49 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
+..|+|+|+||+||||+++.++..++..++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4578999999999999999999999988877654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0033 Score=81.34 Aligned_cols=169 Identities=9% Similarity=0.081 Sum_probs=100.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---C----CcEEEEeCCCc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---G----LNFLAVKGPEL 716 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~----~~~i~v~~~~l 716 (957)
.-..++|.++..++|.+.+... -...+-+.|+|+.|+|||+||+.+++.. . ...+.+.....
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 4456899999999998877421 1223448899999999999999987652 1 22334443331
Q ss_pred ccc---------------------cccchHHHHHHHHHHHHhCC--CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 717 FSK---------------------WVGESEKAVRSLFAKARANA--PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 717 ~~~---------------------~vg~~~~~ir~~f~~A~~~~--p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
... ........+...+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 100 00112223333344333333 7899999998431
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCC-CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP-PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~-P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
.++.+ ..+..||+||......... . .....+.++. .+.++-.++|..+.....-.......++++.+.|..
T Consensus 250 -~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 -VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp -HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred -HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 12222 2245788888765442111 1 2234667775 788888888887774433223345778888998854
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00016 Score=80.40 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEecccccc-----c---ccchhHHHHHHHHHHHhccCCeEEEE
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVS-----Q---NYGESEQALHEVFDSASQSAPAVVFI 394 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~-----~---~~ge~e~~i~~vf~~a~~~~p~IL~I 394 (957)
.+.+++.++|.||+|+|||||++++++.+.. ..+.+++..... . ++.......+..+..|....|.+|++
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 3456788999999999999999999988743 345666543211 0 11002234556777788889999999
Q ss_pred cCcc
Q 002169 395 DELD 398 (957)
Q Consensus 395 DEiD 398 (957)
||.-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9964
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00051 Score=70.00 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred cceeeCCCCChhhHHHHHHHHHh
Q 002169 682 GILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
.+.|+||+|+||||+++.|++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=76.73 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=46.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEecccc----------ccc-ccchhHHHHHHHHHHHhccCCeE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPEV----------VSQ-NYGESEQALHEVFDSASQSAPAV 391 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~---~~i~i~~~~l----------~~~-~~ge~e~~i~~vf~~a~~~~p~I 391 (957)
+.++..++|.||+|+||||+++++++.+.. --+.+.+..+ +.+ .+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 677888999999999999999999986532 1222322211 000 01111123456677777778999
Q ss_pred EEEcCc
Q 002169 392 VFIDEL 397 (957)
Q Consensus 392 L~IDEi 397 (957)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999997
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=75.07 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc-------------------ccc-cchHHHHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS-------------------KWV-GESEKAVRSLFAKAR 736 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~-------------------~~v-g~~~~~ir~~f~~A~ 736 (957)
+.-+++.|++|+||||++..||..+ +.....+.+..... ... ......++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999998765 55555555432211 011 122334467788888
Q ss_pred hCCCeEEEEeCCchh
Q 002169 737 ANAPSIIFFDEIDGL 751 (957)
Q Consensus 737 ~~~p~ILfiDEid~l 751 (957)
...+.++++|.+..+
T Consensus 180 ~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH 194 (443)
T ss_dssp HTTCSEEEEECCCCS
T ss_pred hCCCCEEEEECCCcc
Confidence 877889999988543
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0042 Score=74.09 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH-------cCCcEE--EEeccc--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD-------SGVNLF--TVNGPE-- 364 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~-------l~~~~i--~i~~~~-- 364 (957)
..++|.+.+++.|.+.+... -...+.|+|+||+|+|||+||+.++.. .....+ .+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH
T ss_pred CeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH
Confidence 45789999999998885321 123457889999999999999988642 211233 333221
Q ss_pred -ccccc----------------cchhHHHHHHHHHHHhcc--CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 365 -VVSQN----------------YGESEQALHEVFDSASQS--APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 365 -l~~~~----------------~ge~e~~i~~vf~~a~~~--~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
+.... .......+...+...... .|.+|+||+++.. ..+ +.
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~l---~~ 253 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WVL---KA 253 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HHH---HT
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HHH---HH
Confidence 00000 001111222222222222 5889999998642 011 22
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcceeeee---cCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI---AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i---~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
+ ..+..||+||...... .... + ..+.+ +..+.++-.++|...+...... .+.....+++.+.|.-
T Consensus 254 l--~~~~~ilvTsR~~~~~-~~~~--~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 254 F--DSQCQILLTTRDKSVT-DSVM--G---PKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGSP 321 (591)
T ss_dssp T--CSSCEEEEEESCGGGG-TTCC--S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTCH
T ss_pred h--cCCCeEEEECCCcHHH-HhcC--C---CceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCCc
Confidence 2 2355777777653311 1111 1 22344 3678889999998877542211 2345778888888764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00058 Score=81.83 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....+...+..+... +..||++||+.+.+
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDV------------KQRLNAAQIIRSLLAP-TKYVICVEHDLSVL 284 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCH------------HHHHHHHHHHHGGGTT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCH------------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 66788888899999999999976533 2233455555555443 56889999987653
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0037 Score=74.17 Aligned_cols=144 Identities=14% Similarity=0.075 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHH----HcCCcE---EEEeccccc-----
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAH----DSGVNL---FTVNGPEVV----- 366 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~----~l~~~~---i~i~~~~l~----- 366 (957)
.|.+..++.|.+.+... +-...+.|.|+|+.|+||||||+.+++ ....+| +.++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999998886322 112346788999999999999999996 333332 223322210
Q ss_pred c---c---ccc------------h-hHHHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 367 S---Q---NYG------------E-SEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 367 ~---~---~~g------------e-~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
. . ..+ + ....+...+....... +.+|++|+++... ++ .+..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~~- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHHH-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--cccc-
Confidence 0 0 000 0 1122333444444554 8899999986531 11 1111
Q ss_pred ccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHH
Q 002169 427 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476 (957)
Q Consensus 427 ~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l 476 (957)
..+..||+||.... +.... +..+..+.++..+.++-.++|..+.
T Consensus 263 --~~gs~ilvTTR~~~-v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVE-ISNAA---SQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp --HTTCEEEEEESBGG-GGGGC---CSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred --cCCCEEEEEcCCHH-HHHHc---CCCCeEEECCCCCHHHHHHHHHHHh
Confidence 14556777776432 22111 1123458899999999999998774
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0048 Score=79.74 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=98.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---C----CcEEEEecccccc-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---G----VNLFTVNGPEVVS- 367 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~----~~~i~i~~~~l~~- 367 (957)
..+.|.+++++.|.+.+... -...+-|.|+|+.|+|||+||+.++... . ..++.++.+....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred ceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 46899999999999886322 1234568899999999999999887542 1 1233444322100
Q ss_pred --------------------cccchhHHHHHHHHHHHhccC--CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 368 --------------------QNYGESEQALHEVFDSASQSA--PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 368 --------------------~~~ge~e~~i~~vf~~a~~~~--p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
.........+...+....... +.+|+||+++... .++.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~~~ 253 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VLKA 253 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HHTT
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HHHh
Confidence 000112223334444444444 7899999987431 1222
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecC-CCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAV-PSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~-P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
+ ..+..||+||........ +. .....+.++. .+.++-.++|.......... .+.....+++.+.|.-
T Consensus 254 ~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 254 F--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSP 321 (1249)
T ss_dssp T--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCH
T ss_pred h--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCH
Confidence 2 234567778765432211 11 2234467775 88899999998877544333 2345677888887764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00043 Score=90.37 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=71.4
Q ss_pred HHhcC--CCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCc---------------------ccc-------
Q 002169 672 FKRIG--TRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPEL---------------------FSK------- 719 (957)
Q Consensus 672 ~~~l~--~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l---------------------~~~------- 719 (957)
++++. +++...+.++||+|+||||++++|.+.... .-|.+++.++ ++.
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~ 513 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence 44444 445555999999999999999999987643 2344443211 110
Q ss_pred ---------------------------------cccc------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC
Q 002169 720 ---------------------------------WVGE------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 720 ---------------------------------~vg~------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
.+|+ ..++.|..+++|.-..|.||+|||+.+-.+..
T Consensus 514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~----- 588 (1321)
T 4f4c_A 514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE----- 588 (1321)
T ss_dssp TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT-----
T ss_pred hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH-----
Confidence 1111 12334778888888999999999999776532
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.++.+.+.+..+- .+.++|.+||+...+.
T Consensus 589 ----te~~i~~~l~~~~-----~~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 589 ----SEGIVQQALDKAA-----KGRTTIIIAHRLSTIR 617 (1321)
T ss_dssp ----THHHHHHHHHHHH-----TTSEEEEECSCTTTTT
T ss_pred ----HHHHHHHHHHHHh-----CCCEEEEEcccHHHHH
Confidence 2333333333321 2457888999998763
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00029 Score=83.37 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=27.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
+.+.+++.+.|.||+|+|||||++++++.+
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999999865
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00099 Score=72.51 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH-HhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE-LDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~-ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++. .....++.. +..+. .+.+||++||+++.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~i~~~ll~~~~--~~~tviivtHd~~~ 221 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDV------------LTEKEIFESCVCKLM--ANKTRILVTSKMEH 221 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCH------------HHHHHHHHHCCCCCT--TTSEEEEECCCHHH
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCH------------HHHHHHHHHHHHHhh--CCCEEEEEecCHHH
Confidence 56778888899999999999866533 223344443 23332 25689999997643
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00048 Score=72.35 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36678899999999999999999999998764
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00061 Score=75.15 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------------C----CcEEEEeCCCcccc-----c---cc------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------------G----LNFLAVKGPELFSK-----W---VG------ 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------------~----~~~i~v~~~~l~~~-----~---vg------ 722 (957)
|+++..-++|+||||+|||++|..+|... + .+.+.++...-+.. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45555569999999999999999998752 2 45666665543210 0 00
Q ss_pred ----------chHH---HHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcch--HHHHHHHHHHHhccccCCcEE
Q 002169 723 ----------ESEK---AVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVS--DRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 723 ----------~~~~---~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~--~~v~~~LL~~ld~~~~~~~v~ 786 (957)
..+. .+..+.+.++. ..+.+|+||.+..+....... . .... ...+.+++..|..+....++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~-~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-R-GKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-T-TSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-C-ccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 0111 12223334444 678899999999987432111 0 1122 234667777777665566777
Q ss_pred EEEecC
Q 002169 787 VIAATN 792 (957)
Q Consensus 787 VI~aTN 792 (957)
||++.+
T Consensus 252 vi~~nq 257 (322)
T 2i1q_A 252 VLVTNQ 257 (322)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 777654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00043 Score=70.16 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~---l~~~~i~i 360 (957)
+.-++++||+|+||||++..++.. .+..++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999999998655543 25554443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=68.02 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=27.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeC
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKG 713 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~ 713 (957)
|+.+..-++|+||||+|||+++..+|... +.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45666669999999999999998886542 445555543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00029 Score=71.00 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
++.++..++|.||||+||||+++++++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 46678889999999999999999999887766777776544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=74.84 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=49.0
Q ss_pred hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEecc-cc--------ccc-ccchhHHHHHHHHHHHhc
Q 002169 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGP-EV--------VSQ-NYGESEQALHEVFDSASQ 386 (957)
Q Consensus 321 ~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~-~l--------~~~-~~ge~e~~i~~vf~~a~~ 386 (957)
+.++.+.++..++|+||+|+||||+++++++.+. ..++.+..+ ++ +.+ .+|.....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344567788899999999999999999998653 233333321 10 111 011111223455666777
Q ss_pred cCCeEEEEcCc
Q 002169 387 SAPAVVFIDEL 397 (957)
Q Consensus 387 ~~p~IL~IDEi 397 (957)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999997
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0018 Score=67.59 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccc-------ccccccchh-H----HHHHHHHHHHhc----cC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE-------VVSQNYGES-E----QALHEVFDSASQ----SA 388 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~-------l~~~~~ge~-e----~~i~~vf~~a~~----~~ 388 (957)
++.-++++||+|+||||++..++..+ +..++.+.... +.+. .|-. + .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35567788999999999988777654 55665553211 1111 1100 0 011234444433 35
Q ss_pred CeEEEEcCcccc
Q 002169 389 PAVVFIDELDAI 400 (957)
Q Consensus 389 p~IL~IDEiD~l 400 (957)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 889999999765
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00032 Score=72.58 Aligned_cols=96 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred ceeeCCCCChhhHHHHHHHHHhC---------------------CcEEEEeCCCccccccc---------chHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASEAG---------------------LNFLAVKGPELFSKWVG---------ESEKAVRSLF 732 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~---------------------~~~i~v~~~~l~~~~vg---------~~~~~ir~~f 732 (957)
+.|.||+|+|||||+++|++. . ..++.=+..+.+..+.. .....+..++
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~~~~l 103 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVIPKLM 103 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q ss_pred H------------HHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 733 A------------KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 733 ~------------~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+ +|....|.||++||+.+. ... .+...+..+ ..+..|| +||+.+.++
T Consensus 104 ~~glGq~qrv~lAraL~~~p~lllLDEPts~-~~~---------------~l~~~l~~l--~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 104 EAGIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPA---------------QMKMFLTRL--GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HTTSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHH---------------HHHHHHTTB--CTTCEEE-EEEC-----
T ss_pred HhCCchHHHHHHHHHHhcCCCEEEEeCCccc-cHH---------------HHHHHHHHh--cCCCEEE-EECCHHHHh
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0016 Score=81.37 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~ 351 (957)
.+..++.++|+||+|+||||+.|.++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 455678899999999999999999874
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=83.09 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=55.2
Q ss_pred CcceeeCCCCChhhHHHHHHHHH-----hCC--cE--EEE----------eCCCcccccccchHHHHHHHHHHH-HhCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE-----AGL--NF--LAV----------KGPELFSKWVGESEKAVRSLFAKA-RANAP 740 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~-----~~~--~~--i~v----------~~~~l~~~~vg~~~~~ir~~f~~A-~~~~p 740 (957)
.-++|.||+|+||||+.|.+|.. .|. |. ..+ ...+........+......+...+ ....|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 34899999999999999999532 232 11 111 111111111111112222221111 15678
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++|+|||+.+..+.. ....+...++..+. ...+..+|++||+.+..
T Consensus 743 sLlLLDEp~~GlD~~--------~~~~i~~~il~~l~---~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 743 SLIIIDELGRGTSTY--------DGFGLAWAISEYIA---TKIGAFCMFATHFHELT 788 (934)
T ss_dssp CEEEEESCSCSSCHH--------HHHHHHHHHHHHHH---HTTCCEEEEEESCGGGG
T ss_pred cEEEEeCCCCCCCHH--------HHHHHHHHHHHHHH---hcCCCEEEEEcCcHHHH
Confidence 999999998654321 12233344555543 22367889999986643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00041 Score=70.81 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+.+...++|.|||||||||++++||..++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34556799999999999999999999999988754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=75.54 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=31.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 478899999999999999999999888643 556666653
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00039 Score=69.77 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
++.|+|+|||||||||+++.+|..++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999887654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=69.34 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
....+..++|.|+||+||||+++.++..++..++.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34556789999999999999999999999866677777655
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0012 Score=68.76 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
.+++++.+.|.||+|+|||||++++++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356788999999999999999999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0018 Score=76.40 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHH--HHHHh--CCcEEEEeCCCccc------c---ccc---------------------
Q 002169 677 TRPPTGILMFGPPGCSKTLMARA--VASEA--GLNFLAVKGPELFS------K---WVG--------------------- 722 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAka--iA~~~--~~~~i~v~~~~l~~------~---~vg--------------------- 722 (957)
+.+..-++|.||||+|||||+++ ++... +..-+.+++.+... . |+-
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 44556699999999999999999 45543 34556665543100 0 000
Q ss_pred ----c--hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 723 ----E--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 723 ----~--~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
. -...............|.+|+|||+..+.+.- ........+++..+..+.. .+++||++||+.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-------~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-------DASSVVRRELFRLVARLKQ-IGATTVMTTERIEE 187 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-------CCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-------CCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCC
Confidence 0 01122334444555778899999998764321 1122333344444444433 37789999999876
Q ss_pred C
Q 002169 797 I 797 (957)
Q Consensus 797 i 797 (957)
+
T Consensus 188 ~ 188 (525)
T 1tf7_A 188 Y 188 (525)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00089 Score=69.06 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred HHHHHHHhhcc--CCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcC
Q 002169 188 LLQTCAASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYP 263 (957)
Q Consensus 188 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~ 263 (957)
+...+++++|. ||||.+||.|.+++.+..+.|.|.+++|. ++++|+++|.|.+..
T Consensus 133 ~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~---------------------g~viV~~~T~I~~~~ 189 (211)
T 3qwz_A 133 LFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS---------------------PYCIVAPDTVIHCEG 189 (211)
T ss_dssp HHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS---------------------SEEEECTTCEEECCS
T ss_pred hHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC---------------------CCEEECCCcEEEEcC
Confidence 55688888997 79999999999999999999999999996 689999999999854
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00064 Score=68.45 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..+..|+|.|+||+||||+++.++..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4556789999999999999999999999877654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0036 Score=73.21 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=51.9
Q ss_pred Ce-EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC--CCChhhhCCCCcceecccCCC
Q 002169 740 PS-IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVGPP 816 (957)
Q Consensus 740 p~-ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~--~id~aLlr~gRfd~~i~~~~P 816 (957)
|. +|+|||++.+.... ... +..++..+-......++.+|++|+++. .++..++. .|...|-+...
T Consensus 297 P~ivlvIDE~~~ll~~~---------~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~ 364 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV---------GKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 364 (512)
T ss_dssp CEEEEEEETHHHHHHHH---------HHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCS
T ss_pred CcEEEEEeCHHHHHhhh---------hHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcC
Confidence 54 89999999886421 111 223344443333445899999999997 57777776 77778888888
Q ss_pred CHHHHHHHHH
Q 002169 817 NETDREEIFR 826 (957)
Q Consensus 817 ~~~er~~Il~ 826 (957)
+..+...|+.
T Consensus 365 s~~dsr~ilg 374 (512)
T 2ius_A 365 SKIDSRTILD 374 (512)
T ss_dssp SHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 8888887765
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0053 Score=71.77 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=50.2
Q ss_pred Ce-EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC--CchhhhhCCCCcceeeeecCCCH
Q 002169 389 PA-VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--SIEPALRRPGRLDREIEIAVPSP 465 (957)
Q Consensus 389 p~-IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~--~ld~al~r~gRfd~~I~i~~P~~ 465 (957)
|. +++|||+..+... ....+ ..++..+-...+.-++.+|++|.++. .++..++. .|...|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~-~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKV-EELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHH-HHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhh-------hhHHH-HHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 65 8999998776531 11122 22333332333445889999999987 57777776 6777788999999
Q ss_pred HHHHHHHH
Q 002169 466 AQRLEILH 473 (957)
Q Consensus 466 ~~r~~Il~ 473 (957)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887775
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0021 Score=69.84 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
...+..|+|.||||+||||+++.++..++..++.|++..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3456778899999999999999999988555677776443
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00089 Score=87.47 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++.++...
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 467889999999999999999999999987754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0014 Score=74.70 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCC--eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 727 AVRSLFAKARANAP--SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 727 ~ir~~f~~A~~~~p--~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.-|..++.+....| .||+|||+++-++ ......+...|..+. .+..||++||+++
T Consensus 301 ~qrl~lA~~l~~~~~~~~LlLDEpt~~LD------------~~~~~~l~~~L~~l~--~~~~vi~itH~~~ 357 (415)
T 4aby_A 301 LSRVMLAVSTVLGADTPSVVFDEVDAGIG------------GAAAIAVAEQLSRLA--DTRQVLVVTHLAQ 357 (415)
T ss_dssp HHHHHHHHHHHHCCSSSEEEESSTTTTCC------------HHHHHHHHHHHHHHT--TTSEEEEECSCHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCCC------------HHHHHHHHHHHHHHh--CCCEEEEEeCcHH
Confidence 34556666776778 8999999996543 333444555555543 2567888999764
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0006 Score=68.38 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
++.++|+|||||||||+|+.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999988754
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0014 Score=68.49 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=41.6
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCC-------cccccccch-----HHHHHHHHHHHHh----CCCeEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE-------LFSKWVGES-----EKAVRSLFAKARA----NAPSII 743 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~-------l~~~~vg~~-----~~~ir~~f~~A~~----~~p~IL 743 (957)
++++||+|+||||++..++..+ +...+.++... +.+. .|.. ......+++.+.. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7788999999999888887654 55555553221 2111 1110 0112345555554 357899
Q ss_pred EEeCCchh
Q 002169 744 FFDEIDGL 751 (957)
Q Consensus 744 fiDEid~l 751 (957)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999854
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00019 Score=72.86 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=21.3
Q ss_pred cceeeCCCCChhhHHHHHHHHHh---CCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEA---GLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v 711 (957)
-++++||+|+||||++..++..+ +...+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999986555442 5544433
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00081 Score=66.52 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|+|+|||||||||+++.+|+.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999987554
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00073 Score=67.21 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
.-++|.|+||+||||+|++|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999988887654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0006 Score=68.73 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH-cCCcEEE
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD-SGVNLFT 359 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~-l~~~~i~ 359 (957)
....+..|+|+|+|||||||+++.++.. +|.+++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3445678999999999999999999998 6766553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00095 Score=80.05 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
+.+.+++.+.|.||+|+|||||++++++.+
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999999999865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00048 Score=69.36 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=32.9
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.++.-++|.||||+||||++++|++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4445568999999999999999999988778888876543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00076 Score=67.43 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..+..|+|+|+||+||||+++.++..++..++..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34567899999999999999999999998876543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0028 Score=69.41 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=46.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-------c-------------cchhHHHHHHHH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ-------N-------------YGESEQALHEVF 381 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~-------~-------------~ge~e~~i~~vf 381 (957)
...+++.++|+||+|+||||++..+|..+ +..+..+++...... | .++....+...+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 34567889999999999999999999765 445555543211100 0 012222223345
Q ss_pred HHHhccCCeEEEEcCcc
Q 002169 382 DSASQSAPAVVFIDELD 398 (957)
Q Consensus 382 ~~a~~~~p~IL~IDEiD 398 (957)
..+....|.+++||+.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55566778899999863
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0029 Score=78.14 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=54.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh-----CCc----EE----------EEeCCCcccccccchHHHHHHHH-HHHHhCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA-----GLN----FL----------AVKGPELFSKWVGESEKAVRSLF-AKARANAP 740 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~-----~~~----~i----------~v~~~~l~~~~vg~~~~~ir~~f-~~A~~~~p 740 (957)
.-++|.||+|+||||+.|+++... |.. .. .+...+.+...........+.+. .......|
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~p 687 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 687 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Confidence 448999999999999999998642 211 01 11111111110011111111111 11235689
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++|++||+.+..+. .....+..+++..+. ...+..+|++||+.+..
T Consensus 688 sLlLLDEp~~Gtd~--------~d~~~i~~~ll~~l~---~~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 688 SLVLMDEIGRGTST--------YDGLSLAWACAENLA---NKIKALTLFATHYFELT 733 (800)
T ss_dssp EEEEEESCCCCSSS--------SHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGG
T ss_pred CEEEEECCCCCCCh--------hHHHHHHHHHHHHHH---hccCCeEEEEeCCHHHH
Confidence 99999999754321 112222234444443 22367899999988654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0019 Score=78.54 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCe--EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 727 AVRSLFAKARANAPS--IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~--ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
..|..+++|....|. +|++||+.+.++.. ....+-+++..+. .. +..||++||+.+.
T Consensus 208 ~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~---------~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 208 AQRIRLATQIGSRLTGVLYVLDEPSIGLHQR---------DNDRLIATLKSMR---DL-GNTLIVVEHDEDT 266 (670)
T ss_dssp HHHHHHHHHHHTCCCSCEEEEECTTTTCCGG---------GHHHHHHHHHHHH---HT-TCEEEEECCCHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCccCCCHH---------HHHHHHHHHHHHH---Hc-CCEEEEEeCCHHH
Confidence 347778888888888 99999999765432 2222333444442 22 6789999998653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.007 Score=63.21 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEeccccccc-------------------------c------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNGPEVVSQ-------------------------N------ 369 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~----l~~~~i~i~~~~l~~~-------------------------~------ 369 (957)
|++++.-++|+|+||+|||++|..+|.. .+..++.++...-... +
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 6888999999999999999999876532 3556655553210000 0
Q ss_pred -----------cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 370 -----------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 370 -----------~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
.......+..+...+....+.++++|.+..+...... .....+....|..+.. ..++.+++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~--~~~~~~~~~~L~~~a~----~~~i~vi~~~ 179 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE--ERKIREVLLKLNTILL----EMGVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS--GGGHHHHHHHHHHHHH----HHCCEEEEEE
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccC--hHHHHHHHHHHHHHHH----HcCCCeEEEE
Confidence 0011122333444455667889999998877543221 1223344444444443 3466777776
Q ss_pred CC
Q 002169 439 NR 440 (957)
Q Consensus 439 N~ 440 (957)
..
T Consensus 180 q~ 181 (251)
T 2zts_A 180 EA 181 (251)
T ss_dssp CC
T ss_pred EE
Confidence 43
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0028 Score=73.45 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=65.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc----ccc----------------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL----FSK---------------------------- 719 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l----~~~---------------------------- 719 (957)
|+.+..-+++.|+||+|||+++..+|... +.+.+.++...- ..+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~ 278 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTM 278 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 56666779999999999999999998653 446666554211 000
Q ss_pred ----------cc----cchHHHHHHHHHHH-HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc
Q 002169 720 ----------WV----GESEKAVRSLFAKA-RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 784 (957)
Q Consensus 720 ----------~v----g~~~~~ir~~f~~A-~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 784 (957)
|+ +-+...++..+... +...|.+|+||++..+...... .......+..++..|..+....+
T Consensus 279 a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~----~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 279 AMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRS----KENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp HHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHhC
Confidence 00 00112222222222 2357899999999987532110 01123344556666665544457
Q ss_pred EEEEEecC
Q 002169 785 VTVIAATN 792 (957)
Q Consensus 785 v~VI~aTN 792 (957)
+.||++++
T Consensus 355 i~vi~~sq 362 (454)
T 2r6a_A 355 VPVIALSQ 362 (454)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEec
Confidence 77887776
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00099 Score=65.57 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEe
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 361 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~ 361 (957)
.|+|.||||+||||+++.++..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998775443
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.011 Score=69.94 Aligned_cols=166 Identities=11% Similarity=0.133 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHH----HhCCcE---EEEeCCCcc--c-
Q 002169 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS----EAGLNF---LAVKGPELF--S- 718 (957)
Q Consensus 649 ~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~----~~~~~~---i~v~~~~l~--~- 718 (957)
+|.+..++.|.+.+... +....+.+.++|+.|+|||+||+.+++ .....| +.++.+... +
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999998888877321 112235588999999999999999996 232222 223333211 0
Q ss_pred -----c---ccc-------------chHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 719 -----K---WVG-------------ESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 719 -----~---~vg-------------~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
. .++ .....+...+....... +.+|+||+++... ++ .+
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------------~~--~~ 260 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------------TI--RW 260 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------------HH--HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------------hh--cc
Confidence 0 000 01122344455554554 8899999997431 11 11
Q ss_pred hccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHccCCc
Q 002169 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD--VNIRELACLSEGCT 851 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~--~~l~~la~~t~g~s 851 (957)
... .+..||+||..... +.. -+.....+.++..+.++-.++|..+....+...+ ....++++.+.|..
T Consensus 261 ~~~---~gs~ilvTTR~~~v---~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 261 AQE---LRLRCLVTTRDVEI---SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp HHH---TTCEEEEEESBGGG---GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ccc---CCCEEEEEcCCHHH---HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 111 35568888865432 111 1112356888999999988888877433221111 12455667777643
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0099 Score=70.06 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=52.5
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC--CCChhhhCCCCcceecccCCCCH
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~--~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
-+|+|||++.+.... ...+ ...+..+-......++.+|++|.+|. .++..++. -|...|-+...+.
T Consensus 345 ivvVIDE~~~L~~~~---------~~~~-~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------GKKV-EELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHT---------CHHH-HHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhh---------hHHH-HHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCH
Confidence 589999999886532 1122 22333333334456899999999998 78888877 7777888888888
Q ss_pred HHHHHHHH
Q 002169 819 TDREEIFR 826 (957)
Q Consensus 819 ~er~~Il~ 826 (957)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88777764
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0035 Score=78.43 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA 350 (957)
..++.++|+||+|+||||+.|.+|
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346779999999999999999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=85.15 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.|..+++|....|.||++||+.+-++.. .++.+.+.+..+. .+.++|.+||+.+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~---------~~~~i~~~l~~~~-----~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTE---------SEAVVQAALDKAR-----EGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHH---------HHHHHHHHHHHHH-----TTSEEEEECSCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 3667788888899999999999765432 2333333443332 256788999987543
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0023 Score=70.40 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=30.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE 364 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~ 364 (957)
..|+|+||+||||||+++.+|..++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46899999999999999999999998888777543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=65.36 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=26.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..+.|.||||+||||++++||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999876653
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0033 Score=67.11 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEEecccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTVNGPEV 365 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~---l~~~~i~i~~~~l 365 (957)
+..|+|.|+||+||||+|+.++.. .|..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999987 6887776665444
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.001 Score=66.91 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=28.5
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..+.-++|.|+||+||||+++.|+..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568999999999999999999999887765
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00045 Score=89.96 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467889999999999999999999999987643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=65.47 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.|||||||||+++.||..++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=81.62 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+.+|....|.||++||+.+.++. .....+...|.. .+..||++||+.+.+
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~------------~~~~~l~~~L~~----~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDT------------VNVAWLVNYLNT----CGITSITISHDSVFL 608 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCH------------HHHHHHHHHHHH----SCSEEEEECSCHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCH------------HHHHHHHHHHHh----CCCEEEEEECCHHHH
Confidence 67788888899999999999866533 223344444443 266889999987654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0092 Score=65.57 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=31.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 478999999999999999999999888543 445655553
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=66.62 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
.++..++|.||+|+||||+++++++.+|.. .+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 457789999999999999999999998764 4555444
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=64.95 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
-++|.||||+||||+++.|+..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 378999999999999999999999887653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=65.68 Aligned_cols=29 Identities=38% Similarity=0.580 Sum_probs=26.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.++|.||||+||||+|++||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988765
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0067 Score=69.97 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 478899999999999999999999887543 556666654
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0016 Score=64.22 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
-..|+|.|+|||||||+++.||..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35789999999999999999999999987653
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.014 Score=68.85 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=51.6
Q ss_pred eEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC--CchhhhhCCCCcceeeeecCCCHHH
Q 002169 390 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--SIEPALRRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 390 ~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~--~ld~al~r~gRfd~~I~i~~P~~~~ 467 (957)
-+|+|||++.+..... ..+...|..++ ...+.-++.+|++|.+|. .++..++. -|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Ia-r~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIA-QKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHH-HHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHH-HHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 4899999988764221 12222232222 333567899999999987 78888877 677788899999888
Q ss_pred HHHHHH
Q 002169 468 RLEILH 473 (957)
Q Consensus 468 r~~Il~ 473 (957)
...|+.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877774
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=66.23 Aligned_cols=31 Identities=35% Similarity=0.606 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
..|+|.|+||+||||+++.|+..+|..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999887643
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0017 Score=64.87 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=29.2
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
..+..|+|.|+||+||||+++++|..++.+++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3455699999999999999999999999887653
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=68.56 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.2
Q ss_pred cCCccccccC-ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 640 VPKVKWEDVG-GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 640 ~p~v~~~di~-G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
..+.+|+++- +|.++...+...+.. ....++|.|+||||||+++++++..+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455666664 566666655555431 12379999999999999999998765
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=64.52 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
++..++|.||||+||||+++.+++.+|..+ +++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 456789999999999999999999887654 444444
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=65.79 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|+|.|+|||||||+++.++..++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999999987554
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0027 Score=75.68 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i 360 (957)
...++|.||||||||+++++++..+ +..++.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4678999999999999999998754 5555444
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0026 Score=67.61 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=32.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+..++|.||||+||||+|+.|+..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344568999999999999999999999876777776554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0088 Score=65.51 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc-------cc-------------ccchHHHHHHHHHHH
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS-------KW-------------VGESEKAVRSLFAKA 735 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~-------~~-------------vg~~~~~ir~~f~~A 735 (957)
++.-++|.||+|+||||+++.||..+ +.....+.+..... .| .++........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44558999999999999999999765 44444333321110 01 011112223456667
Q ss_pred HhCCCeEEEEeCCch
Q 002169 736 RANAPSIIFFDEIDG 750 (957)
Q Consensus 736 ~~~~p~ILfiDEid~ 750 (957)
....|.++++|++..
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 778899999999863
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0035 Score=68.05 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
+.-++|.||||+||||+|+.++.+++..++.|++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 445899999999999999999998865566776533
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0018 Score=66.05 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEV 365 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l 365 (957)
..++..|.|.||+||||||+++++++.+ |...+.+++.++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3567889999999999999999999988 554445654433
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0068 Score=76.78 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=56.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHH-----hCC----cEEEEeC----------CCcccccccchHHHH-HHHHHHHHhCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE-----AGL----NFLAVKG----------PELFSKWVGESEKAV-RSLFAKARANAP 740 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~-----~~~----~~i~v~~----------~~l~~~~vg~~~~~i-r~~f~~A~~~~p 740 (957)
.-++|.||+|+||||+.|.++-. .+. ....+.. .+............+ +..+..+....|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~ 869 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAH 869 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCC
Confidence 45899999999999999999421 231 1111111 111100000111111 233445556789
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++|+|||+.+..+.. ....++-+++..+. ...+..+|++||+.+.+
T Consensus 870 sLlLLDEp~~Gtd~~--------dg~~~~~~il~~L~---~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 870 SLVLVDELGRGTATF--------DGTAIANAVVKELA---ETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp CEEEEECTTTTSCHH--------HHHHHHHHHHHHHH---HTSCCEEEEECCCHHHH
T ss_pred cEEEEECCCCCCChH--------HHHHHHHHHHHHHH---hcCCCEEEEEeCCHHHH
Confidence 999999998653221 11222334444443 23367899999987653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=65.70 Aligned_cols=31 Identities=42% Similarity=0.650 Sum_probs=27.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHH-hCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASE-AGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~-~~~~~i~ 710 (957)
+..++|+|+|||||||+++.||.. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 445999999999999999999999 6877765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.002 Score=64.94 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.+..|+|.|+|||||||+++.+|..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999998876543
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0022 Score=65.34 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.+..|+|.|+||+||||+|+.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 355789999999999999999999999876544
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0021 Score=66.53 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.+..|+|.|+||+||||+++.||..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999766543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=66.50 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc-------------------ccc-chhHHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS-------------------QNY-GESEQALHEVFDSA 384 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~-------------------~~~-ge~e~~i~~vf~~a 384 (957)
++..|+++|++|+||||++..+|..+ |..+..+++..... ... .+....++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46778899999999999999999765 56666666532111 011 22344556677777
Q ss_pred hccCCeEEEEcCcc
Q 002169 385 SQSAPAVVFIDELD 398 (957)
Q Consensus 385 ~~~~p~IL~IDEiD 398 (957)
....+++++||...
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77668899999863
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=64.36 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE 364 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~ 364 (957)
.++..|.|.|++|+||||+++.++..+ |.+++.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 356788999999999999999999987 88888777533
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0081 Score=68.31 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
+.+.++ .+.|+||+|+|||||+++|+..++
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 556677 888999999999999999976554
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=64.54 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..|+|.|+||+||||+++.++..++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4578999999999999999999999876543
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=64.48 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=27.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.|+|.|+||+||||+|+.||..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999987653
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=72.65 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
.+++.++|+||+|+||||+.|.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35677899999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0024 Score=65.08 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..|+|.|+||+||||+++.|++.+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999876553
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=63.66 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=28.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
..++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999988753
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=64.64 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
+..|+|.|+||+||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999887
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0023 Score=63.13 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
..|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=64.61 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|+|.|+||+||||+++.++..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999999998766
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0017 Score=69.18 Aligned_cols=37 Identities=27% Similarity=0.551 Sum_probs=31.3
Q ss_pred cCCCC---CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 324 LGLRP---TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 324 l~i~~---~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+.+.+ ++.|.|.|++|+||||+++.+|+.++..++..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34455 78899999999999999999999999877653
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=68.57 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
-++|.|||||||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988776654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=69.00 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=28.1
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
-++|.||||+||||+|+.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999988876554
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=66.53 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
..+..|+|.|+||+||||+++.||..++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998766543
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.01 Score=61.98 Aligned_cols=110 Identities=22% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH----hCCcEEEEeCCCcccc--------------------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKGPELFSK-------------------------------- 719 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~----~~~~~i~v~~~~l~~~-------------------------------- 719 (957)
|+++..-++++|+||+|||++|-.+|.. .+.+.+.++...-...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 4566666999999999999999877543 2555555543221000
Q ss_pred ------cc----cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 720 ------WV----GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 720 ------~v----g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+. ......+..+...+....+.++++|.+..+...... .....+.+..|..... ..++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~----~~~~~~~~~~L~~~a~----~~~i~vi~ 177 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE----ERKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS----GGGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccC----hHHHHHHHHHHHHHHH----HcCCCeEE
Confidence 00 001112234445556677889999999877543211 1223334444443333 34677777
Q ss_pred ecCC
Q 002169 790 ATNR 793 (957)
Q Consensus 790 aTN~ 793 (957)
+++.
T Consensus 178 ~~q~ 181 (251)
T 2zts_A 178 TTEA 181 (251)
T ss_dssp EECC
T ss_pred EEEE
Confidence 7654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=65.36 Aligned_cols=36 Identities=33% Similarity=0.639 Sum_probs=28.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
++.-++|.||||+||||++++|++.+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 455689999999999999999999997644 444443
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=62.56 Aligned_cols=29 Identities=31% Similarity=0.716 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.||||+||||+++.+ ..+|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888876653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=64.12 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..|+|.|+||+||||+++.++..++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 5679999999999999999999999876544
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=65.95 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999877653
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.016 Score=60.37 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=25.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
-.|++.|+||+||||++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358899999999999998888664 666554443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.002 Score=63.81 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=22.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-HcCC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAH-DSGV 355 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~-~l~~ 355 (957)
..|+|.|+||+||||+|+.++. .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 4688999999999999999998 4554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0025 Score=62.93 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678889999999999999999999999987
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=64.58 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=27.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
..|+|.|+||+||||+|+.|+..++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3589999999999999999999999887654
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0032 Score=63.02 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+|||||||+++.++..++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45789999999999999999999998765543
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.02 Score=58.25 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEe---cc------ccccccc-------------c----hhHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVN---GP------EVVSQNY-------------G----ESEQALHE 379 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~---~~------~l~~~~~-------------g----e~e~~i~~ 379 (957)
...|++|+++|.||||+|-.+|-.. |..+..+. +. .++.... . +.......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3468899999999999999988554 66666662 21 1222210 0 11233444
Q ss_pred HHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 380 VFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 380 vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.++.+. ....++|++||+-....-+--. ...+++++.. +..+.-||+|+|.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--------~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------LEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------HHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCC--------HHHHHHHHHh--CcCCCEEEEECCCC
Confidence 444443 3457899999985432221111 1236666654 44567888898764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0057 Score=62.00 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
+.|+|.||+|+|||||++.|.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5699999999999999999988875443
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0033 Score=65.73 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+|||||||+++.||..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 46799999999999999999999999766543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0099 Score=64.79 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEec
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 362 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~ 362 (957)
.+++.++|+||+|+||||++..+|..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 357789999999999999999999654 556666654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.021 Score=65.44 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc-------------------ccc-chhHHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS-------------------QNY-GESEQALHEVFDSA 384 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~-------------------~~~-ge~e~~i~~vf~~a 384 (957)
++..++++||+|+||||++..+|..+ |..+..+++..... ... .+........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778889999999999999999765 66666555431100 000 11222334556666
Q ss_pred hccCCeEEEEcCcc
Q 002169 385 SQSAPAVVFIDELD 398 (957)
Q Consensus 385 ~~~~p~IL~IDEiD 398 (957)
....+.+++||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 65678899999864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0096 Score=68.22 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc----------------cc---cc-chHHHHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS----------------KW---VG-ESEKAVRSLFAKAR 736 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~----------------~~---vg-~~~~~ir~~f~~A~ 736 (957)
+.-+++.||+|+||||++..||..+ +.....+.+..... .+ .+ ......+..++.+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4458899999999999999998765 55554444321100 00 01 11222345566666
Q ss_pred hCCCeEEEEeCCchh
Q 002169 737 ANAPSIIFFDEIDGL 751 (957)
Q Consensus 737 ~~~p~ILfiDEid~l 751 (957)
...+.++++|++..+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 667889999998643
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.003 Score=64.28 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=27.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
+.-++|.|+||+||||+|+.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999877654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0027 Score=64.52 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
.+.++..+.|.||+|+|||||++++++...
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 355678899999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=62.57 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=27.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..|+|.|+||+||||+|+.||..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988765
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=63.77 Aligned_cols=30 Identities=33% Similarity=0.652 Sum_probs=26.2
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..++|.|+||+||||+++.||..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 348999999999999999999999876653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0035 Score=65.23 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
.+..++-|+|.||||+||+|.|+.||..++.. .|+..+++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 44567788899999999999999999999874 455555544
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0031 Score=65.19 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+||+||||+++.||..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45789999999999999999999999776544
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=66.35 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=28.6
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.+.++-|+|.||||+||+|.|+.||..++.+.++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4455668899999999999999999999877653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=63.84 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.+.-|+|.|+||+||||+|+.||..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345699999999999999999999999887654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0033 Score=64.63 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.||||+||||+|+.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998766544
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.005 Score=65.64 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=41.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHH---hCCcEEEEeCCCcccc---cccchHHHH----HHHHHHHHhCCCeEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSK---WVGESEKAV----RSLFAKARANAPSIIFFDE 747 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~---~~~~~i~v~~~~l~~~---~vg~~~~~i----r~~f~~A~~~~p~ILfiDE 747 (957)
.-|+|.|+||+||||+|+.|+.. .|.+++.++...+... |....+..+ +..+..+... ..+++|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~--~~vIiD~ 79 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN--YWVIVDD 79 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT--SEEEECS
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC--CEEEEeC
Confidence 45899999999999999999997 6788776655433211 222223222 2333334333 5788886
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.01 Score=62.32 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=27.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~ 363 (957)
..++++||+|+|||.++.+++...+...+.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3589999999999999999998887666655543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0027 Score=62.23 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
-++|.||||+||||+|+.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8888887653
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=72.08 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
..-++|.||+|+||||+.|+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 345889999999999999999864
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0063 Score=70.48 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l 353 (957)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998766
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=63.66 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.-|+|.|+||+||||+|+.|+..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999987654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0036 Score=61.43 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.|+||+||||+++.++..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987664
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0037 Score=63.38 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEe
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVN 361 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l-~~~~i~i~ 361 (957)
.+..|+|.|++|+||||+++.++..+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46679999999999999999999998 57776654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=62.74 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=25.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..++|.||||+||||++++|++.+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 348899999999999999999998765543
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0038 Score=63.51 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+|||||||+++.++..++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45688999999999999999999998765543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=74.02 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA 350 (957)
++.++|+||+|+||||++|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5788999999999999999984
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0033 Score=66.29 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.+..++|.||||+||||++++|+..+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3678999999999999999999998887543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.004 Score=64.34 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|.|.||+||||||+++.+++.+|.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 356899999999999999999999987654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0025 Score=63.55 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
.-|+|.|+||+||||+|+.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999876
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0035 Score=64.46 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.||||+||||+|+.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998776544
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0023 Score=71.19 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=26.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.++|+||||+||||++++||+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 49999999999999999999999887744
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0038 Score=65.89 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.++..|+|.||||+||||+|+.|+..++..++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567899999999999999999999988765543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=65.63 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=24.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++..
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567789999999999999999999999987
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.018 Score=62.68 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=42.2
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCcccc----------------cccchHHHHHHHHHHHHhC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELFSK----------------WVGESEKAVRSLFAKARAN 738 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l~~~----------------~vg~~~~~ir~~f~~A~~~ 738 (957)
.+.-++|.||+|+||||++..||..+ |..+..+........ +.......++..++.+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 34568999999999999999998754 445555544321100 0111233455555544 5
Q ss_pred CCeEEEEeCC
Q 002169 739 APSIIFFDEI 748 (957)
Q Consensus 739 ~p~ILfiDEi 748 (957)
.+.+++||-+
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 6789999944
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=65.47 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.+..|+|.||||+||||+++.||..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567999999999999999999999987543
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0036 Score=65.46 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34599999999999999999999999877654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0033 Score=64.87 Aligned_cols=28 Identities=32% Similarity=0.708 Sum_probs=25.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
++|.||||+||+|.|+.||..++.+.++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7899999999999999999999887654
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0034 Score=62.83 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+.-|+|.|+||+||||+|+.|+..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34589999999999999999999999776653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0029 Score=65.76 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=28.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345699999999999999999999998877653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=64.14 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
+.++..+.|.||+|+||||+++.+++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678889999999999999999999876
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.017 Score=58.91 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=63.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEE---eCC------Cccccc-----------c--cc----hHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAV---KGP------ELFSKW-----------V--GE----SEKAVRSL 731 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v---~~~------~l~~~~-----------v--g~----~~~~ir~~ 731 (957)
..+++|+++|.||||+|-++|-.. |.....+ ++. .++... . .+ .....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 348999999999999999997654 6665555 321 122221 0 00 12334555
Q ss_pred HHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhC
Q 002169 732 FAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLR 803 (957)
Q Consensus 732 f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr 803 (957)
+..++. ....+|+|||+......+--. .+.++..+... ..+.-||+|+|.+ ++.|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----------~~ev~~~l~~R--p~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP----------LEEVISALNAR--PGHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----------HHHHHHHHHTS--CTTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC----------HHHHHHHHHhC--cCCCEEEEECCCC---cHHHHH
Confidence 555544 456899999997543322111 12355566533 3467788899865 446654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=70.28 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.++|+||||+||||+++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 49999999999999999999998877644
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0085 Score=62.44 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~ 713 (957)
..+++.|+||||||+++-.+|..+ |...+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 348999999999999999988764 656544444
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0027 Score=74.60 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEeccc-cccc---c--------cchhHHHHHHHHHHHhccCCeE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPE-VVSQ---N--------YGESEQALHEVFDSASQSAPAV 391 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~-l~~~---~--------~ge~e~~i~~vf~~a~~~~p~I 391 (957)
+..+..++|.||+|+||||+++++++.+.. ..+.+.+.. +... + .+.....+...+..+....|++
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 455778999999999999999999988743 456665543 2110 0 0111123445666777788999
Q ss_pred EEEcCc
Q 002169 392 VFIDEL 397 (957)
Q Consensus 392 L~IDEi 397 (957)
++++|+
T Consensus 337 iivgEi 342 (511)
T 2oap_1 337 IIVGEV 342 (511)
T ss_dssp EEESCC
T ss_pred EEeCCc
Confidence 999997
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=65.17 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=29.8
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+.++|.||+|+|||++|+.||..++..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 358999999999999999999999988888764
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.003 Score=63.22 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.9
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
.-++|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999887
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.015 Score=71.74 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=37.3
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcH-HHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHH
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQ-EAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~-~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
+...|+++.-.+...+.+.+.-..|.... +.+.. .+.....+++.||+|+|||+++..+...
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44567777666666666655544443221 11111 1222456999999999999987777544
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=61.14 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=26.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.|+|.|+||+||||+|+.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999988765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 957 | ||||
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-102 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 6e-75 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-102 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-74 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 8e-81 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 3e-53 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 3e-61 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 2e-44 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 8e-59 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 2e-43 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 1e-38 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 4e-26 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.001 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 9e-36 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 5e-31 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 4e-32 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 6e-30 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 7e-30 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 9e-19 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 2e-25 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 5e-16 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 5e-22 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 4e-16 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 3e-18 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 9e-12 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 3e-11 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 8e-10 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 1e-10 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 5e-06 | |
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 6e-08 | |
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 2e-06 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 3e-07 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 1e-04 | |
| d1r6bx2 | 268 | c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A | 4e-06 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 1e-05 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 3e-05 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 3e-05 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 1e-04 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 6e-05 | |
| d1qvra3 | 315 | c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus | 2e-04 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 4e-04 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 0.004 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 4e-04 | |
| d1r6bx3 | 315 | c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A | 0.002 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 0.002 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.004 |
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 317 bits (815), Expect = e-102
Identities = 107/248 (43%), Positives = 147/248 (59%), Gaps = 4/248 (1%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT +AR
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 60
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
AVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + RG
Sbjct: 61 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 120
Query: 759 SDGVS-VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
G + ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + + P+
Sbjct: 121 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 180
Query: 818 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877
RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E IT
Sbjct: 181 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK--IT 238
Query: 878 MQHLKTAI 885
M+ L+ A
Sbjct: 239 MKDLEEAA 246
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 243 bits (623), Expect = 6e-75
Identities = 90/235 (38%), Positives = 127/235 (54%), Gaps = 4/235 (1%)
Query: 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL 357
+ G + LK+I+ S +G R KGVLL GPPG GKT LAR A ++ V
Sbjct: 11 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 70
Query: 358 FTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR---KDGGEELSQR 414
T +G + V G + ++F++A + AP +VFIDE+DA+ R GG + ++
Sbjct: 71 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ 130
Query: 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474
+ LL MDG + ++V+AATNRPD ++PAL RPGR DR+I I P R +IL
Sbjct: 131 TLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRI 190
Query: 475 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLH 529
G + D ++ L+ T GFVGADL L NEAAL+ R + T D+
Sbjct: 191 HARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 244
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 316 bits (812), Expect = e-102
Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 4/251 (1%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
+ K + DV G E K ++ E VE+ + F+++G + P G+LM GPPG KTL+A+
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
A+A EA + F + G + +VG VR +F +A+ AP IIF DEID + RG
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 759 SDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
G ++ ++Q+LVE+DG + VIAATNRPD +DPALLRPGRFDR + VG P+
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183
Query: 818 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877
RE+I ++H+R++P + D++ +A + G +GAD++ + EAA+ A N ++
Sbjct: 184 VRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV--VS 241
Query: 878 MQHLKTAIRHV 888
M + A +
Sbjct: 242 MVEFEKAKDKI 252
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 243 bits (623), Expect = 1e-74
Identities = 81/236 (34%), Positives = 131/236 (55%), Gaps = 4/236 (1%)
Query: 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL 357
+ G + + +++ S LG + KGVL+ GPPGTGKT LA+ A ++ V
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73
Query: 358 FTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR---KDGGEELSQR 414
FT++G + V G + ++F+ A ++AP ++FIDE+DA+ R GG + ++
Sbjct: 74 FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ 133
Query: 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474
+ +L MDG +G++VIAATNRPD ++PAL RPGR DR++ + +P R +IL
Sbjct: 134 TLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193
Query: 475 LLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHS 530
+ + + D + ++ T GF GADLA L NEAAL R ++ + + +
Sbjct: 194 HMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKA 248
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 260 bits (666), Expect = 8e-81
Identities = 114/261 (43%), Positives = 171/261 (65%), Gaps = 1/261 (0%)
Query: 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARA 699
VP+V WED+GG +VK +L E V++P +H + F + G P G+L +GPPGC KTL+A+A
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 60
Query: 700 VASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES 759
+A+E NF+++KGPEL + W GESE VR +F KAR AP ++FFDE+D +A RG
Sbjct: 61 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 120
Query: 760 DGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE 818
+DRV++Q+L E+DG+ + NV +I ATNRPD IDPA+LRPGR D+L+Y+ P+E
Sbjct: 121 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 819 TDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878
R I + +LRK P + DV++ LA ++ G +GAD++ IC+ A AI E++++
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 240
Query: 879 QHLKTAIRHVQPSEIHSYKEL 899
+ +T ++ E E+
Sbjct: 241 RERQTNPSAMEVEEDDPVPEI 261
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 185 bits (469), Expect = 3e-53
Identities = 90/238 (37%), Positives = 135/238 (56%), Gaps = 5/238 (2%)
Query: 298 LGGLSKEYAILKDIIISSSVKSTL-SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356
+GGL L++++ G+ P+KGVL +GPPG GKT LA+ A++ N
Sbjct: 9 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 68
Query: 357 LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR---KDGGEELSQ 413
++ GPE+++ +GESE + E+FD A Q+AP V+F DELD+IA AR G +
Sbjct: 69 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 128
Query: 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473
R++ +L MDG+ V +I ATNRPD I+PA+ RPGRLD+ I I +P R+ IL
Sbjct: 129 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 188
Query: 474 ALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHST 531
A L + D ++E+L+ T+GF GADL +C A + +R + + + T
Sbjct: 189 ANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT 245
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 207 bits (526), Expect = 3e-61
Identities = 115/259 (44%), Positives = 159/259 (61%), Gaps = 17/259 (6%)
Query: 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS 702
V ++DVGG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 703 EAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV 762
E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE- 119
Query: 763 SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDRE 822
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 120 -VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 178
Query: 823 EIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS-------- 874
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 179 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 238
Query: 875 -------RITMQHLKTAIR 886
+TM + A+
Sbjct: 239 AEVMNSLAVTMDDFRWALS 257
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 159 bits (402), Expect = 2e-44
Identities = 107/229 (46%), Positives = 157/229 (68%), Gaps = 2/229 (0%)
Query: 299 GGLSKEYAILKDIIISSSVKSTL-SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL 357
GG K+ A +K+++ L ++G++P +G+LL+GPPGTGKT +AR A+++G
Sbjct: 7 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 66
Query: 358 FTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA 417
F +NGPE++S+ GESE L + F+ A ++APA++FIDELDAIAP R+ E+ +R+V+
Sbjct: 67 FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 126
Query: 418 TLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS 477
LL LMDG+ + V+V+AATNRP+SI+PALRR GR DRE++I +P RLEIL
Sbjct: 127 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 186
Query: 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 526
M+ + D ++E ++ THG VGADLAALC+EAAL +R+ + D
Sbjct: 187 NMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 234
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 202 bits (515), Expect = 8e-59
Identities = 39/286 (13%), Positives = 80/286 (27%), Gaps = 31/286 (10%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKW--EDVGGQREVKTQLMEA--VEWPQKH 668
+ + F+K ++ + V E V + G ++ + E
Sbjct: 51 VESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCS 110
Query: 669 QEAFKRIGTRPPTGILMF-GPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESE 725
+ G R +G+++ G KT + A+ G + V+ E S + +
Sbjct: 111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFN 170
Query: 726 KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785
V + +I D + + + R LL ++ +
Sbjct: 171 VFVDDIARAMLQ--HRVIVIDSLKNVIGAA-GGNTTSGGISRGAFDLLSDIGAMAASRGC 227
Query: 786 TVIAATNR---PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRE 842
VIA+ N DKI + R + V + ++ +
Sbjct: 228 VVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQ--------- 278
Query: 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888
+ E ++ I + Q AI+ V
Sbjct: 279 -------RLTHTLQTSYGEHSVLTIHTS--KQSGGKQASGKAIQTV 315
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 158 bits (401), Expect = 2e-43
Identities = 36/263 (13%), Positives = 82/263 (31%), Gaps = 27/263 (10%)
Query: 266 NAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLG 325
+ ++ + + + E +V + V+ + + + + + + G
Sbjct: 60 DKNAQRIVAYKEKSVKAEDGSV-SVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGG 118
Query: 326 LRPTKGVLL-HGPPGTGKTSLARLCA--HDSGVNLFTVNGPEVVSQNYGESEQALHEVFD 382
R G+++ G +GKT L TV E +S + + ++
Sbjct: 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIAR 178
Query: 383 SASQSAPAVVFIDELDAIAPARKDGGE-ELSQRMVATLLNLMDGVCRTDGVLVIAATNR- 440
+ Q V+ ID L + A R LL+ + + + G +VIA+ N
Sbjct: 179 AMLQ--HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236
Query: 441 --PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498
D I ++ R + + ++L G++
Sbjct: 237 SNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRL---------------- 280
Query: 499 VGADLAALCNEAALVCLRRYSKI 521
L E +++ + +
Sbjct: 281 -THTLQTSYGEHSVLTIHTSKQS 302
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 143 bits (360), Expect = 1e-38
Identities = 21/270 (7%), Positives = 75/270 (27%), Gaps = 24/270 (8%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFL 709
++ + +L + +E + ++ PT L+ G PG KT + A+ E N +
Sbjct: 7 TDKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI 61
Query: 710 AVKGPELF---SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD 766
+ + + + + + + +G +
Sbjct: 62 VIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTT 121
Query: 767 RVMSQLL---------VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
V Q ++ + + + R + + R
Sbjct: 122 DVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVV 181
Query: 818 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877
+ + +H + + + + I + + +++
Sbjct: 182 KNLPTNLETLHKTGLF---SDIRLYNREGVKLYSSLETPSISPKETLEKELNR----KVS 234
Query: 878 MQHLKTAIRHVQPSEIHSYKELSAKFQRLV 907
+ ++ + ++ + + + + +F+ +
Sbjct: 235 GKEIQPTLERIEQKMVLNKHQETPEFKAIQ 264
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 106 bits (266), Expect = 4e-26
Identities = 19/224 (8%), Positives = 53/224 (23%), Gaps = 18/224 (8%)
Query: 308 LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV- 366
++ + + + + LL G PG+GKTSL ++ N+ ++
Sbjct: 11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
Query: 367 --SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL----- 419
+ +V + + + E + +
Sbjct: 71 QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 130
Query: 420 ------LNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473
M + + R +++ R + + +
Sbjct: 131 LQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNL-- 188
Query: 474 ALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517
+ + L Y + + ++ + L
Sbjct: 189 --ETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN 230
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 39.9 bits (92), Expect = 0.001
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 615 KLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWP 665
K+ + + ++ + E P+ K Q +E+++ P
Sbjct: 232 KVSGKEIQPTLERIEQKMVLNKHQETPEFK---------AIQQKLESLQPP 273
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 137 bits (346), Expect = 9e-36
Identities = 40/291 (13%), Positives = 73/291 (25%), Gaps = 39/291 (13%)
Query: 622 EKARMKVRPSAMREVILE-----VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRI- 675
K R+ +++ + ++ + M V W +
Sbjct: 81 AKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVV 140
Query: 676 ---------GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK-WVGESE 725
L GP KT +A A+ G L V P +G +
Sbjct: 141 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI 200
Query: 726 KAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL 779
+F + + PS + +D L R V V+ L +
Sbjct: 201 DQFLVVFEDVKGTGGESRDLPSGQGINNLDNL---RDYLDGSVKVN------LEKKHLNK 251
Query: 780 HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDRE-EIFRIHLRKIPCSSDV 838
++ I N RF + + P + E L K
Sbjct: 252 RTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRI--IQS 306
Query: 839 NIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889
I L L A+ + + + E ++ + +V
Sbjct: 307 GIALLLMLIWYRPVAEFAQSIQSRIVEWKERL--DKEFSLSVYQKMKFNVA 355
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 123 bits (310), Expect = 5e-31
Identities = 33/210 (15%), Positives = 57/210 (27%), Gaps = 19/210 (9%)
Query: 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GESEQALHEVFDS 383
+ + L GP +GKT+LA G VN P G + VF+
Sbjct: 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFED 209
Query: 384 ASQSA------PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA 437
+ P+ I+ LD + + ++ + I
Sbjct: 210 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQ---IFP----PGIVT 262
Query: 438 TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497
N R ++I+ L +E ++ S + L M
Sbjct: 263 MNEYS---VPKTLQARFVKQID--FRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWY 317
Query: 498 FVGADLAALCNEAALVCLRRYSKIQTSSDV 527
A+ A + R K + S
Sbjct: 318 RPVAEFAQSIQSRIVEWKERLDKEFSLSVY 347
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 123 bits (309), Expect = 4e-32
Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 12/216 (5%)
Query: 660 EAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719
++ + + K P +L+ GPP KT +A +A E+ F+ + P+
Sbjct: 20 RVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIG 79
Query: 720 WVGESE-KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 778
+ ++ +A++ +F A + S + D+I+ L S+ V+ LLV L
Sbjct: 80 FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR---FSNLVLQALLVLLKK 136
Query: 779 LHQRVNVTV-IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD 837
+ + I T+R D + + F ++V PN E++ D
Sbjct: 137 APPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHV--PNIATGEQLLEALELLGN-FKD 192
Query: 838 VNIRELACLSEGCT---GADISLICREAAISAIEEN 870
+A +G G L+ E ++ E
Sbjct: 193 KERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEY 228
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 116 bits (292), Expect = 6e-30
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 9/196 (4%)
Query: 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE-QALHE 379
+ P VLL GPP +GKT+LA A +S + P+ + ++ QA+ +
Sbjct: 32 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKK 91
Query: 380 VFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439
+FD A +S + V +D+++ + G + + A L+ L + +L+I T+
Sbjct: 92 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 151
Query: 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG-- 497
R D ++ I VP+ A ++L AL + D E ++ G
Sbjct: 152 RKDVLQEMEML-NAFSTTIH--VPNIATGEQLLEALELLG--NFKDKERTTIAQQVKGKK 206
Query: 498 -FVGADLAALCNEAAL 512
++G + E +L
Sbjct: 207 VWIGIKKLLMLIEMSL 222
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 116 bits (291), Expect = 7e-30
Identities = 58/257 (22%), Positives = 90/257 (35%), Gaps = 29/257 (11%)
Query: 632 AMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGC 691
A+R PK ++ GQ +K +L +E + +E P +L+FGPPG
Sbjct: 2 ALR------PK-TLDEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGL 46
Query: 692 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 751
KT +A +A E G+N GP + + + I+F DEI L
Sbjct: 47 GKTTLAHVIAHELGVNLRVTSGPAI-------EKPGDLAAILANSLEEGDILFIDEIHRL 99
Query: 752 AAIRGK---ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 808
+ + + V D V+ Q + T+I AT RP I LL
Sbjct: 100 SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIV 159
Query: 809 RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIE 868
L P E + + L + + + E+ S G L R A
Sbjct: 160 EHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRGTMRVAKRLF-RRVRDFAQV 217
Query: 869 ENLDASRITMQHLKTAI 885
+ IT + A+
Sbjct: 218 AGEE--VITRERALEAL 232
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 84.6 bits (208), Expect = 9e-19
Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 21/238 (8%)
Query: 308 LKDIIISSSVKSTLSSL------GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 361
L + I +K L P + +LL GPPG GKT+LA + AH+ GVNL +
Sbjct: 8 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 67
Query: 362 GPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-----EELSQRMV 416
GP + + + S ++FIDE+ ++ ++ + + ++
Sbjct: 68 GPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVI 120
Query: 417 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476
+I AT RP I L + +E P + + A L
Sbjct: 121 GQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL 180
Query: 477 SGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTL 534
G+ + + + + G + L ++ T L + L
Sbjct: 181 LGVRIT--EEAALEIGRRSRGTMR-VAKRLFRRVRDFAQVAGEEVITRERALEALAAL 235
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 106 bits (264), Expect = 2e-25
Identities = 53/263 (20%), Positives = 91/263 (34%), Gaps = 28/263 (10%)
Query: 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEA 704
+ + GQ + K + A+ + + + + P ILM GP G KT +AR +A A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 705 GLNFLAVKGPELF--SKWVGESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGK 757
F+ V+ + E + +R L A I+F DEID +
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY 133
Query: 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN------------RPDKIDPALLRPG 805
VS + V LL ++G ++ + RP + P L G
Sbjct: 134 SGADVS-REGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ--G 190
Query: 806 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 865
R + + + D E I + + +EG A + ++ A +
Sbjct: 191 RLPIRVELTALSAADFERILTEPHASL-----TEQYKALMATEGVNIAFTTDAVKKIAEA 245
Query: 866 AIEENLDASRITMQHLKTAIRHV 888
A N I + L T + +
Sbjct: 246 AFRVNEKTENIGARRLHTVMERL 268
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 78.0 bits (191), Expect = 5e-16
Identities = 55/215 (25%), Positives = 80/215 (37%), Gaps = 28/215 (13%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNL-------FTVNGPEVVSQNYGESEQALHE 379
K +L+ GP G GKT +AR A + FT G + +
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 106
Query: 380 VFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVAT-LLNLMDG--------VCRTD 430
+ +VFIDE+D I + G ++S+ V LL L++G + +TD
Sbjct: 107 GGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTD 166
Query: 431 GVLVIAA----TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDS 486
+L IA+ RP + P L+ GRL +E+ S A IL SL +
Sbjct: 167 HILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILTE----PHASLTEQ 220
Query: 487 EVEYLSMATHGFVGADLAALCNEAALVCLRRYSKI 521
MAT G A + A R K
Sbjct: 221 YKA--LMATEGVNIAFTTDAVKKIAEAAFRVNEKT 253
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 94.9 bits (234), Expect = 5e-22
Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 26/243 (10%)
Query: 670 EAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKGPELFSKWVGESE 725
+ R + G PG KT+ R + F+ + G + E
Sbjct: 33 GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 92
Query: 726 KAVRSLFAKARANAPSIIFFDEIDGLAAIRGK-------ESDGVSVSDRVMSQLLVELDG 778
A R F + R ++ ++ L +
Sbjct: 93 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD 152
Query: 779 LHQRVNVTVIAATNRPDKIDPALLRPGRFDR--LLYVGPPNETDREEIFRIHLRKIP--- 833
+ ++ + ++ ++ P + +I +
Sbjct: 153 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG 212
Query: 834 CSSDVNIRELACLSEGCTGADISL--------ICREAAISAIEENLDASRITMQHLKTAI 885
S+ ++ +A ++ T D + I +A +A + I + ++ +
Sbjct: 213 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNG--RKHIAPEDVRKSS 270
Query: 886 RHV 888
+ V
Sbjct: 271 KEV 273
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 77.5 bits (189), Expect = 4e-16
Identities = 29/240 (12%), Positives = 55/240 (22%), Gaps = 26/240 (10%)
Query: 313 ISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAH----DSGVNLFTVNGPEVVSQ 368
+ + + L + G L G PGTGKT R + +NG +
Sbjct: 28 LDILLGNWLRNPGHHY-PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 86
Query: 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEEL---------SQRMVATL 419
E A + F+ L R +
Sbjct: 87 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIR 146
Query: 420 LNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPS--PAQRLEILHALLS 477
L + ++ + + + + I Q +IL
Sbjct: 147 LGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 206
Query: 478 GMEHSLL--DSEVEYLSMATHGFVGADLAA--------LCNEAALVCLRRYSKIQTSSDV 527
+ ++ ++ T D + +A + K DV
Sbjct: 207 AGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDV 266
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 82.7 bits (203), Expect = 3e-18
Identities = 48/246 (19%), Positives = 78/246 (31%), Gaps = 20/246 (8%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
PK ++ GQ VK +L A+E + E +L+ GPPG KT +A +
Sbjct: 5 PK-SLDEFIGQENVKKKLSLALEAAKMRGE--------VLDHVLLAGPPGLGKTTLAHII 55
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760
ASE N GP L + L + R + I ++ +
Sbjct: 56 ASELQTNIHVTSGPVLVKQ-----GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAI 110
Query: 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN-ET 819
D ++ + T++ AT R + L RF +L + +
Sbjct: 111 EDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKE 168
Query: 820 DREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879
+E I R D +A S G T + + D RI
Sbjct: 169 LKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKAD--RINTD 225
Query: 880 HLKTAI 885
+ +
Sbjct: 226 IVLKTM 231
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 63.8 bits (154), Expect = 9e-12
Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 22/238 (9%)
Query: 308 LKDIIISSSVKSTLSSL------GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 361
L + I +VK LS VLL GPPG GKT+LA + A + N+ +
Sbjct: 8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 67
Query: 362 GPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421
GP +V Q A+ + V+FIDE+ + A ++ + ++
Sbjct: 68 GPVLVKQ---GDMAAILTSLERGD-----VLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 119
Query: 422 LMDGVCRT-----DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476
++ ++ AT R + LR R +E+ + + EI+
Sbjct: 120 GKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAA 177
Query: 477 SGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTL 534
S M+ + D+ E ++ + G L + + + VL + L
Sbjct: 178 SLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 62.9 bits (151), Expect = 3e-11
Identities = 20/265 (7%), Positives = 58/265 (21%), Gaps = 43/265 (16%)
Query: 657 QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716
L + G G KT +A+
Sbjct: 27 ALARIYLNRLLS----GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK 82
Query: 717 FSKWVGESEKAVRSLFAK---------------------------ARANAPSIIFFDEID 749
+ + + ++ + N ++ DE
Sbjct: 83 QAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQ 142
Query: 750 GLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809
+ + + + + + + DG+++ + V + + + +
Sbjct: 143 SMLSSPR-IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG 201
Query: 810 LLYVGP-PNETDREEIFRIHLRKIPCS---SDVNIRELACLSEGCTGADISL-----ICR 860
P + I ++ ++ + G D S +
Sbjct: 202 FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 261
Query: 861 EAAISAIEENLDASRITMQHLKTAI 885
A A ++ ++ A+
Sbjct: 262 MACEMAEAMG--RDSLSEDLVRKAV 284
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 58.6 bits (140), Expect = 8e-10
Identities = 27/270 (10%), Positives = 67/270 (24%), Gaps = 43/270 (15%)
Query: 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355
+L E L I ++ + S G G GKT+LA+
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLS---DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
Query: 356 NLFTVNGPEVVSQNYGESEQALHEVF---------------------------DSASQSA 388
+ + L+ + + ++
Sbjct: 73 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132
Query: 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448
+V +DE ++ + + E + + + + + + + ++
Sbjct: 133 YLLVILDEFQSMLSSPRIAAE--DLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMR 190
Query: 449 RRPGRLDREI------EIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502
+ +++ +I + A L + +E +S G D
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
Query: 503 LAA-----LCNEAALVCLRRYSKIQTSSDV 527
+A A + + V
Sbjct: 251 GSARRAIVALKMACEMAEAMGRDSLSEDLV 280
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.9 bits (146), Expect = 1e-10
Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 22/257 (8%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVE-WPQKHQEAFK---RIGTRPPTGILMFGPPGCSKTLM 696
P + V G + +L + W + +FK + G+ +++GPPG KT
Sbjct: 10 PT-NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTA 68
Query: 697 ARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756
A VA E G + L ++ SK + + + A N + +F + + G
Sbjct: 69 AHLVAQELGYDILEQNASDVRSKTL------LNAGVKNALDNMSVVGYFKHNEEAQNLNG 122
Query: 757 KESDGVSVSDRV----MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
K + + +L ++ + +I N + D
Sbjct: 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFR 182
Query: 813 VGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADI-SLICREAAISAIEENL 871
N + K +V I L + G DI +I + IS + +
Sbjct: 183 RPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG----DIRQVINLLSTISTTTKTI 237
Query: 872 DASRITMQHLKTAIRHV 888
+ I + K +++
Sbjct: 238 NHENIN-EISKAWEKNI 253
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (109), Expect = 5e-06
Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 13/247 (5%)
Query: 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSL-----GLRPTKGVLLHGPPGTGKTSLAR 347
++ ++ G LK+ + + S G + +L+GPPG GKT+ A
Sbjct: 11 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 70
Query: 348 LCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG 407
L A + G ++ N +V + + D+ S + +
Sbjct: 71 LVAQELGYDILEQNASDVR--SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVII 128
Query: 408 GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQ 467
+E+ + + P +R R+ +I+ P
Sbjct: 129 MDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANS 188
Query: 468 RLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527
L + + L + ++ L T G D+ + N L + +K ++
Sbjct: 189 IKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINL--LSTISTTTKTINHENI 242
Query: 528 LHSTGTL 534
+
Sbjct: 243 NEISKAW 249
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 52.4 bits (125), Expect = 6e-08
Identities = 46/258 (17%), Positives = 75/258 (29%), Gaps = 54/258 (20%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
P+ + DV GQ V T L + R L G G KT +AR +
Sbjct: 8 PQ-TFADVVGQEHVLTALANGLS------------LGRIHHAYLFSGTRGVGKTSIARLL 54
Query: 701 ASEAGLNFLAVKGPELFSKWVGESE------------------KAVRSLFAKARANAPS- 741
A P E E + R L +
Sbjct: 55 AKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 114
Query: 742 ---IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798
+ DE+ L S + LL L+ + +V + AT P K+
Sbjct: 115 RFKVYLIDEVHML-------------SRHSFNALLKTLEEPPE--HVKFLLATTDPQKLP 159
Query: 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLI 858
+L E R ++ I + ++ LA +EG +SL
Sbjct: 160 VTILSRCLQFH--LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 217
Query: 859 CREAAISAIEENLDASRI 876
+ AI++ + + +
Sbjct: 218 --DQAIASGDGQVSTQAV 233
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (113), Expect = 2e-06
Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 40/214 (18%)
Query: 308 LKDIIISSSVKSTLSSL--GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365
D++ V + L++ R L G G GKTS+ARL A P
Sbjct: 11 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 70
Query: 366 VSQNYGESEQALH------------------EVFDSASQSAPA----VVFIDELDAIAPA 403
V N E EQ ++ D+ + V IDE+
Sbjct: 71 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM---- 126
Query: 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVP 463
LS+ LL ++ + V + AT P + + + +
Sbjct: 127 -------LSRHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSR---CLQFHLKAL 174
Query: 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497
Q L +L+ + ++ L+ A G
Sbjct: 175 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 208
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 51.3 bits (122), Expect = 3e-07
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 22/168 (13%)
Query: 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP-------PTGILMFGPPGCSKTLMARAV 700
+ GQ + K + A+ + ++R+ + P ILM GP G KT +AR +
Sbjct: 16 IIGQADAKRAVAIAL---RNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL 69
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760
A A F+ V+ + VG K V S+ +A ++ EI + +
Sbjct: 70 AKLANAPFIKVEATKF--TEVGYVGKEVDSIIRDLTDSAMKLVRQQEIA-----KNRARA 122
Query: 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 808
+R++ LL V ++ R + LR G+ D
Sbjct: 123 EDVAEERILDALLPPAKNQWGEVENHDSHSSTR--QAFRKKLREGQLD 168
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE--SEQALHEVFDSASQS 387
K +L+ GP G GKT +AR A + V + Y + + ++ DSA +
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL 109
Query: 388 ------------APAVVFIDELDAIAPARKDGGEELSQRM 415
A V LDA+ P K+ E+
Sbjct: 110 VRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHD 149
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 47.3 bits (112), Expect = 4e-06
Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 317 VKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAH----------DSGVNLFTVNGPEVV 366
++ + L R LL G G GKT++A A + +++++ ++
Sbjct: 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 86
Query: 367 S--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424
+ + G+ E+ + Q +++FIDE+ I A G ++ NL+
Sbjct: 87 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD------AANLIK 140
Query: 425 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDR---EIEIAVPSPAQRLEILHALLSGME- 480
+ + + VI +T + L R +I+I PS + ++I++ L E
Sbjct: 141 PLLSSGKIRVIGSTT-YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEA 199
Query: 481 HSLLDSEVEYLSMA 494
H + + + A
Sbjct: 200 HHDVRYTAKAVRAA 213
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 6/191 (3%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPA- 390
L+ G TGK+S+ ++ ++ + ++ + +NY + L E+ ++
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 391 ---VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447
+ + + I + +++ + NL++ + VI + +
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL--V 149
Query: 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 507
R L + A + + I+ G+ + L E + F +L
Sbjct: 150 KLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFS 209
Query: 508 NEAALVCLRRY 518
E A+ LRR
Sbjct: 210 REEAIEFLRRG 220
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 45.2 bits (106), Expect = 3e-05
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 24/158 (15%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRI-----------------GTRPPTGILMFGPPGCS 692
GQ + K AV K +++ + IL+ GP G
Sbjct: 21 GQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG 80
Query: 693 KTLMARAVASEAGLNFLAVKGPELFSK-WVGESEK-----AVRSLFAKARANAPSIIFFD 746
KTLMA+ +A + L +VGE + +++ + I+F D
Sbjct: 81 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFID 140
Query: 747 EIDGLAAIRGKESDGVSVSDR-VMSQLLVELDGLHQRV 783
EID ++ + S VS V LL ++G +
Sbjct: 141 EIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNI 178
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 44.5 bits (105), Expect = 3e-05
Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHE--VFDSASQS 387
VL+ G G GK +ARL S F + ++ E+E +E F A S
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 388 AP--------AVVFIDELDAIAPARKDGGEELSQRMVATLLNLM-DGVCRTDG------- 431
+F+DE+ ELS A LL ++ G G
Sbjct: 86 KEGFFELADGGTLFLDEIG-----------ELSLEAQAKLLRVIESGKFYRLGGRKEIEV 134
Query: 432 -VLVIAATNRP--DSIEPALRRPGRLDR--EIEIAVPSPAQRLE 470
V ++AATNR + ++ R R IEI +P +R E
Sbjct: 135 NVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKE 178
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 42.2 bits (99), Expect = 1e-04
Identities = 38/161 (23%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 669 QEAFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEAGLNFLAVKGP------------ 714
+E ++I +L+ G G K ++AR + + +
Sbjct: 10 KEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 69
Query: 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL-AAIRGKESDGVSVSDRVMSQLL 773
ELF G AV S +F DEI L + K RV+
Sbjct: 70 ELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLL-------RVIESGK 122
Query: 774 VELDGLHQ--RVNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
G + VNV ++AATNR K L++ G+F LY
Sbjct: 123 FYRLGGRKEIEVNVRILAATNRNIK---ELVKEGKFREDLY 160
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 43.8 bits (102), Expect = 6e-05
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS 702
+ GQ ++K L+ P G+L+FG G K+ RA+A+
Sbjct: 8 AIVGQEDMKLALLLTAVDPGIG-------------GVLVFGDRGTGKSTAVRALAA 50
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 42.4 bits (99), Expect = 2e-04
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 21/131 (16%)
Query: 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSK 693
RE +L + + + V GQ E + +A+ + A + RP L GP G K
Sbjct: 11 REKLLRLEEELHKRVVGQDEAIRAVADAI----RRARAGLKDPNRPIGSFLFLGPTGVGK 66
Query: 694 TLMARAVASE---AGLNFLAVKGPELFSKW------------VGESEKAVRSLFAKARAN 738
T +A+ +A+ + + E K VG E L R
Sbjct: 67 TELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQ--LTEAVRRR 124
Query: 739 APSIIFFDEID 749
S+I FDEI+
Sbjct: 125 PYSVILFDEIE 135
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 308 LKDIIISSSVKSTLSSL--GLRPTKGVLLHGPPGTGKTSLARLCAH 351
L + + + + L SL R +LL+GP GTGK +
Sbjct: 10 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 55
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (86), Expect = 0.004
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 18/109 (16%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
PK + E+ L + P+ +L++GP G K A+
Sbjct: 7 PK-SLNALSHNEELTNFLKSLSDQPRDLP------------HLLLYGPNGTGKKTRCMAL 53
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID 749
+ G V + A ++P + D
Sbjct: 54 L-----ESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD 97
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 327 RP--TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA 384
RP K V + G +GK+ L A G E V + G EQA+
Sbjct: 3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQ 62
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (89), Expect = 0.002
Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 37/229 (16%)
Query: 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG--TRPPTGILMFGPPGC 691
R+ + + V GQ + L EA+ + A +G +P L GP G
Sbjct: 10 RDTLKNLGDRLKMLVFGQDKAIEALTEAI------KMARAGLGHEHKPVGSFLFAGPTGV 63
Query: 692 SKTLMARAVASEAGLNFLAVKGPEL----------FSKWVGESEKAVRSLFAKARANAPS 741
KT + ++ G+ L E + L + +
Sbjct: 64 GKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 123
Query: 742 IIFFDEID------------GLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789
++ DEI+ + +++G R + ++ G+ + ++
Sbjct: 124 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGL 183
Query: 790 ATNRPDKIDPALLRP-------GRFDRLLYVGPPNETDREEIFRIHLRK 831
++ R D +++ + ++ + +
Sbjct: 184 IHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 232
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 38.4 bits (88), Expect = 0.002
Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 26/209 (12%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
P+ + +D+ GQ + +L V+ +L GPPG KT A A+
Sbjct: 20 PQ-RLDDIVGQEHIVKRLKHYVKTGSMPH-------------LLFAGPPGVGKTTAALAL 65
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760
A E EL E+ + + K + A + + + ++
Sbjct: 66 ARELFGENWRHNFLEL----NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 121
Query: 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820
+ + NV I + N KI + R +
Sbjct: 122 TQDAQQALRRTM------EMFSSNVRFILSCNYSSKIIEPIQSRCAIFR-FRPLRDEDIA 174
Query: 821 REEIFRIHLRKIPCSSDVNIRELACLSEG 849
+ + + + + ++ + ++EG
Sbjct: 175 KRLRYIAENEGLELTEEG-LQAILYIAEG 202
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.2 bits (85), Expect = 0.004
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365
+LL G PG+GK+++A A+ GV + ++
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 957 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.92 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.89 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.89 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.87 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.83 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.79 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.74 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.72 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.71 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.69 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.68 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.67 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.65 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.65 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.65 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.64 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.63 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.61 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.61 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.6 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.6 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.58 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.57 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.55 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.54 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.53 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.52 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.51 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.5 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.48 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.47 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.47 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.45 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.43 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.42 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.42 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.41 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.38 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.37 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.33 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.3 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.26 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.22 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.2 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.06 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 99.03 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.01 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.98 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.92 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.86 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 98.77 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.7 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.67 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.41 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.41 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.37 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.34 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 98.31 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.31 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.29 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.29 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 98.29 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.26 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.25 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.25 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.24 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.23 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.23 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.2 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.2 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.19 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.18 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.16 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.15 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.15 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.14 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 98.11 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.1 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.07 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 98.06 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 98.05 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.03 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 98.02 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.98 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.97 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.96 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.96 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.9 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.87 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.82 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.81 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.79 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.68 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.67 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.63 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.62 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.59 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.59 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.53 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.53 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.43 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.39 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.39 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.38 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.35 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.31 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.26 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.25 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.23 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 97.17 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.17 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.14 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.13 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.1 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.09 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.06 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.06 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.05 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.03 | |
| d1cz5a2 | 94 | C-terminal domain of VAT-N, VAT-Nc {Archaeon Therm | 97.02 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.96 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.96 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.95 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.95 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.95 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.94 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.94 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.94 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.93 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.93 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.93 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.85 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.84 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.81 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.81 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.8 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.78 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.76 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.76 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.75 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.73 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.73 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.73 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.72 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.7 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.7 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.68 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 96.67 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.67 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.64 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.63 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.62 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.61 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.59 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.57 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.56 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.54 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.54 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.53 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.53 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.53 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.51 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.47 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.44 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.43 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.39 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.37 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.36 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.33 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.3 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.29 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.25 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.24 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.23 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.2 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.14 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.11 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.11 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.07 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.04 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.99 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.91 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.89 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.74 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.72 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.69 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.69 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 95.68 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.64 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.6 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.6 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.58 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.5 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.38 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.3 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.24 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.22 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.2 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.15 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.07 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.99 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.97 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.91 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.83 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.82 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.72 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.67 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.35 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.22 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 94.2 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.16 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.09 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.95 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.91 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.89 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.76 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.76 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.66 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.6 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 93.49 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.4 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.38 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.3 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.23 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 93.22 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 93.18 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.18 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.17 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 93.17 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.14 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.05 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.98 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.93 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 92.89 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 92.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.85 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.78 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.75 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.68 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.65 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.56 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 92.48 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.42 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.33 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.33 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.16 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.11 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 92.09 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.06 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.06 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.04 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.01 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.92 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.85 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.75 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.7 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 91.7 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.69 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.63 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.63 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.51 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 91.5 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.49 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.39 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 91.27 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.25 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.18 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.11 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.1 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.05 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.05 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.98 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 90.85 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 90.79 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.78 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.68 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.38 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.32 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 90.1 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.01 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 89.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.96 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.91 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.86 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.73 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.63 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.62 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 89.61 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.6 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.57 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 89.56 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 89.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.49 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.32 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.3 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.19 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.16 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.13 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.99 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.98 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 88.93 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.92 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 88.87 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.86 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 88.86 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.84 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.82 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.73 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.61 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.58 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 88.51 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.49 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.48 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.42 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.18 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 88.17 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.14 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.14 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.13 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 88.06 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 87.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.92 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 87.88 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.84 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.76 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 87.74 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.68 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.6 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.54 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.46 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 87.45 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 87.41 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.34 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.3 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.23 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 87.06 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.05 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.04 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.04 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 86.93 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 86.9 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.9 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.89 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.78 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.72 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 86.7 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.67 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.58 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.45 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.35 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.24 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.2 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.13 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.04 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.03 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 86.01 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.92 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 85.83 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.82 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 85.82 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 85.74 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.7 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.67 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.62 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.43 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 85.41 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 85.41 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.4 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 85.3 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.25 | |
| d1e32a3 | 94 | Membrane fusion atpase p97 domain 2, P97-Nc {Mouse | 85.19 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.17 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.17 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.14 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.05 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.03 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.94 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.92 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.87 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.84 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 84.74 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.72 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 84.6 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.59 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 84.59 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 84.58 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 84.19 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.14 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.08 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 84.03 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.79 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 83.77 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.69 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.65 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.61 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.53 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.48 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.37 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 83.28 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.2 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 83.1 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.09 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 82.93 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 82.81 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.75 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.5 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 82.5 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 82.39 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 82.33 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.24 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.86 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.64 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.62 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 81.41 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 81.33 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 81.03 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 81.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 80.75 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 80.75 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.61 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 80.39 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.23 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-43 Score=378.32 Aligned_cols=247 Identities=39% Similarity=0.698 Sum_probs=226.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.++++|+||+|++++|++|.+.+.+ +.+++.|+++|.++++++|||||||||||++|++||++++.+++.++++++.++
T Consensus 6 ~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~ 84 (256)
T d1lv7a_ 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (256)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence 4789999999999999999999876 788899999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
|+|++++.++.+|+.|+..+||||||||+|.++..|+....+ .....+++++++..|++.....+++||+|||+|+.+|
T Consensus 85 ~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld 164 (256)
T d1lv7a_ 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (256)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred chhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCC
Confidence 999999999999999999999999999999998877554333 3455788999999999998888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
++++||||||+.|+|++|+.++|.+|++.+++++++..++++..+++.|+||+++||.++|++|++.|.++. ...|+.
T Consensus 165 ~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~--~~~i~~ 242 (256)
T d1lv7a_ 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVSM 242 (256)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBCH
T ss_pred HhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CCccCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875 667999
Q ss_pred HHHHHHHHhhC
Q 002169 879 QHLKTAIRHVQ 889 (957)
Q Consensus 879 ~d~~~al~~~~ 889 (957)
+||++|++++.
T Consensus 243 ~d~~~Al~rv~ 253 (256)
T d1lv7a_ 243 VEFEKAKDKIM 253 (256)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.7e-43 Score=373.86 Aligned_cols=244 Identities=44% Similarity=0.739 Sum_probs=223.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
|-|+++|+||+|++++|++|.+.+.. +.+++.|.++|..+++|+|||||||||||++|++||++++.+++.++++++.+
T Consensus 2 ~~p~~~~~di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCcHHHHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 56899999999999999999998764 88999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+|+|++++.++.+|+.|+..+||||||||+|.++..++.... ......+++++|+.+|+++....+++||+|||+++.+
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~l 160 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 160 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999999999887754432 2344667899999999999888899999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|||||++.|+|++|+.++|.+||+.++.+.+...+.++..+|+.|+||+++||.++|++|++.|+++. ...|+
T Consensus 161 d~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~--~~~i~ 238 (247)
T d1ixza_ 161 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKIT 238 (247)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCCcC
Confidence 9999999999999999999999999999999999999899999999999999999999999999999998876 67899
Q ss_pred HHHHHHHH
Q 002169 878 MQHLKTAI 885 (957)
Q Consensus 878 ~~d~~~al 885 (957)
.+||++|+
T Consensus 239 ~~d~~~A~ 246 (247)
T d1ixza_ 239 MKDLEEAA 246 (247)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-41 Score=366.38 Aligned_cols=243 Identities=47% Similarity=0.792 Sum_probs=226.7
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccccc
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVG 722 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg 722 (957)
++|+||+|++++|++|++.+.+|+.+++.++++|..+++|+|||||||||||++|+++|++++.+++.++++++.+.|+|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhh
Q 002169 723 ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALL 802 (957)
Q Consensus 723 ~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLl 802 (957)
+.+..++.+|+.|+..+||||||||+|.++..+.... .+...++++.++..+++.....+++||+|||+++.+|++++
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~ 158 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 158 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCC--CTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGT
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCC--CchHHHHHHHhccccccccccCCccEEEeCCCccccchhhh
Confidence 9999999999999999999999999999998875432 34567889999999998888889999999999999999999
Q ss_pred CCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc-----------
Q 002169 803 RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL----------- 871 (957)
Q Consensus 803 r~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~----------- 871 (957)
||||||+.|+|++|+.++|.+||+.++++.++..+.++..+|+.|+||+++||+++|++|++.|+++..
T Consensus 159 r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~ 238 (258)
T d1e32a2 159 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 238 (258)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCB
T ss_pred hcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Confidence 999999999999999999999999999999998999999999999999999999999999999988742
Q ss_pred ----CCCCCCHHHHHHHHHh
Q 002169 872 ----DASRITMQHLKTAIRH 887 (957)
Q Consensus 872 ----~~~~It~~d~~~al~~ 887 (957)
+...|+++||+.|+.+
T Consensus 239 ~~~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 239 AEVMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp HHHHHHCCBCHHHHHHHHTC
T ss_pred hhhhccCccCHHHHHHHhCc
Confidence 1245899999999863
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-39 Score=344.91 Aligned_cols=227 Identities=35% Similarity=0.598 Sum_probs=205.4
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
..+++|+|++|+++++++|+++|.+...++.|.++|+.+++++|||||||||||++|+++|++++.+++.++++++.+.|
T Consensus 6 ~~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~ 85 (256)
T d1lv7a_ 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (256)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcc
Confidence 34678999999999999999999876555888899999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
+|+++..++.+|+.|....||||||||+|.+++.++... .....+++++|+..|+++....+++||+|||+++.+|+
T Consensus 86 ~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~ 165 (256)
T d1lv7a_ 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (256)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCH
Confidence 999999999999999999999999999999998775443 24566789999999999988889999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+++|+||||++|+|+.|+.++|.+|++.++.++.+. .+.++..+++.|+||+++||..+|++|+..++++
T Consensus 166 al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~ 235 (256)
T d1lv7a_ 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (256)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999998876 7788999999999999999999999998888764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-39 Score=349.13 Aligned_cols=226 Identities=46% Similarity=0.785 Sum_probs=212.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
+|++|||++++|+.|++.|.+++.+ +.+..+|+.+++++|||||||||||++++++|++++.+++.++++++.+.+.|+
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~ 81 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 81 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTH
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhccccccc
Confidence 6899999999999999999998776 888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCC
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPG 452 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~g 452 (957)
.+..++.+|+.|...+|+||||||+|.+++++..+.++...+++..++..++......+++||+|||+++.+|++++|||
T Consensus 82 ~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~g 161 (258)
T d1e32a2 82 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 161 (258)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTT
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcc
Confidence 99999999999999999999999999999988776667778899999999999888889999999999999999999999
Q ss_pred CcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 453 RLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 453 Rfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
|||++|+|+.|+.++|.+||+.++++.... .+.+++.+|+.|+||+|+||..+|++|++.|++|...
T Consensus 162 Rfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~ 228 (258)
T d1e32a2 162 RFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 228 (258)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999887665 5667999999999999999999999999999988654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.2e-40 Score=353.21 Aligned_cols=232 Identities=48% Similarity=0.914 Sum_probs=208.6
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
+|+++|+||+|++++|++|.+.+.+|+.+++.+.++|..+++|+|||||||||||++|+++|++++.+|+.++++++.+.
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~ 80 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 80 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
|.|+.+..++.+|..|+..+||||||||+|.++..+.....+ .....++++.++..|+++....+++||+|||+++.+|
T Consensus 81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCC
Confidence 999999999999999999999999999999998876443222 2345678999999999887777899999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
++++|+|||+..|+|++|+.++|.+||+.++++.....++++.++++.|+||+++||.++|++|+..|+++..
T Consensus 161 ~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~ 233 (265)
T d1r7ra3 161 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 233 (265)
T ss_dssp CGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888899999999999999999999999999999998864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-38 Score=340.16 Aligned_cols=231 Identities=38% Similarity=0.579 Sum_probs=208.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++|+|++++|++|++++.+...++.|.++|..+++++|||||||||||++|+++|++++.+++.++++++.++|+
T Consensus 4 p~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 83 (247)
T d1ixza_ 4 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 83 (247)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT
T ss_pred CCCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccc
Confidence 45689999999999999999988765557889999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
|++++.++.+|+.|..++|+||||||+|.+++++.... +....+++++|+..|+++....+++||+|||+++.+|++
T Consensus 84 g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~a 163 (247)
T d1ixza_ 84 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 163 (247)
T ss_dssp THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGG
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHh
Confidence 99999999999999999999999999999998775432 345678899999999999888899999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQ 522 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~ 522 (957)
++|+|||++.|+|+.|+.++|.+|++.++...... .+.+++.+++.++||+++||..+|++|++.|+++.....
T Consensus 164 l~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~~~~i 237 (247)
T d1ixza_ 164 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 237 (247)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred HcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999887765 677899999999999999999999999999988754433
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-36 Score=324.92 Aligned_cols=229 Identities=38% Similarity=0.665 Sum_probs=201.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|+|+++++++|++.+.+++.+ +.+.++|+.++++||||||||||||++|+++|++++.+++.++++++.+.+
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~ 81 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 81 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcc
Confidence 3568999999999999999999988765 788899999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|..|..+.||||||||+|.++..+.... .....++++.|+..|+++....+++||+|||.++.||+
T Consensus 82 ~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 82 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSC
T ss_pred ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCH
Confidence 999999999999999999999999999999998764332 33456788999999999877888999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+++|+|||+.+|+|+.|+.++|.+||+.++++.... .+.+++.++..|+||+++||..+|++|...|+++...
T Consensus 162 al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~~ 234 (265)
T d1r7ra3 162 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 234 (265)
T ss_dssp GGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876554 5667899999999999999999999999999987543
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.92 E-value=5.3e-28 Score=263.55 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=136.9
Q ss_pred hhhcHHHHHhcCCCCCCccee-eCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCe
Q 002169 665 PQKHQEAFKRIGTRPPTGILM-FGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPS 741 (957)
Q Consensus 665 ~~~~~~~~~~l~~~~~~giLL-~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ 741 (957)
+...++.+..++.+.++|++| |||||||||++|++||.+++ .+|+.+++++++++|+|++++.++.+|+.|+. ||
T Consensus 107 ~~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~ 184 (321)
T d1w44a_ 107 VGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HR 184 (321)
T ss_dssp CSBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CS
T ss_pred cccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--cc
Confidence 344556666777788888655 89999999999999999986 78999999999999999999999999999985 78
Q ss_pred EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC---CCCChhhhCCCCcceecccCCCCH
Q 002169 742 IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 742 ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
||||||||++.+.|+... +....+++++++|.+||++....+++||+|||+. +.++++++|||||++.++++.|+.
T Consensus 185 ilf~DEid~~~~~r~~~~-~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~ 263 (321)
T d1w44a_ 185 VIVIDSLKNVIGAAGGNT-TSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDV 263 (321)
T ss_dssp EEEEECCTTTC------------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSS
T ss_pred EEEeehhhhhccccccCC-CCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCCh
Confidence 999999999998886543 3345678999999999999888899999999953 235667789999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 002169 819 TDREEIFRIHLRKIP 833 (957)
Q Consensus 819 ~er~~Il~~~l~~~~ 833 (957)
++|.+|++.+.+++.
T Consensus 264 ~~r~~il~~~~~~~~ 278 (321)
T d1w44a_ 264 DGEWQVLTRTGEGLQ 278 (321)
T ss_dssp TTEEEEEEECBTTCC
T ss_pred HHHHHHHHHhccCcc
Confidence 999999988877665
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.89 E-value=1.4e-23 Score=222.61 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=146.5
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccch
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGES 724 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~ 724 (957)
.+.|+|..+.++.+.+...... +..+.....|++++|||||||||||++|++||++++.+|+.+++++.+.++.+..
T Consensus 8 ~~~~i~~~~~i~~i~~~~~~~~---~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~ 84 (246)
T d1d2na_ 8 MNGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 84 (246)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred ccCCcCcCHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccc
Confidence 3456665544444444333211 1223334567789999999999999999999999999999999998877776655
Q ss_pred -HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC-CcEEEEEecCCCCCCChhhh
Q 002169 725 -EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR-VNVTVIAATNRPDKIDPALL 802 (957)
Q Consensus 725 -~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~VI~aTN~~~~id~aLl 802 (957)
.+.++.+|+.|+..+||||||||||.+++.+... .....+++++++..|++.... .+++||+|||+++.+|++.+
T Consensus 85 ~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~ 161 (246)
T d1d2na_ 85 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 161 (246)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred hhhhhhhhhhhhhhcccceeehhhhhhHhhhcccc---cchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhh
Confidence 4678999999999999999999999998766432 345678899999999987543 36889999999999987655
Q ss_pred CCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 803 RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 803 r~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
+ +||+..|++| +..+|.+|++.+..... ..+.+...++..+.|.+
T Consensus 162 ~-~rF~~~i~~P--~~~~r~~il~~l~~~~~-~~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 162 L-NAFSTTIHVP--NIATGEQLLEALELLGN-FKDKERTTIAQQVKGKK 206 (246)
T ss_dssp T-TTSSEEEECC--CEEEHHHHHHHHHHHTC-SCHHHHHHHHHHHTTSE
T ss_pred c-CccceEEecC--CchhHHHHHHHHHhccC-CChHHHHHHHHHcCCCc
Confidence 4 6999999884 54456666665544333 33556778888888755
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.89 E-value=1.9e-25 Score=243.15 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=131.9
Q ss_pred hhhhhcCCCCCCeEEE-EcCCCChHHHHHHHHHHHcC--CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEc
Q 002169 319 STLSSLGLRPTKGVLL-HGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFID 395 (957)
Q Consensus 319 ~~~~~l~i~~~~~vLL-~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~ID 395 (957)
..++.++...+++++| |||||||||++|+++|.+++ .+|+.+++++++++|+|+++++++.+|+.|+. |+|||||
T Consensus 112 ~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~ilf~D 189 (321)
T d1w44a_ 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVID 189 (321)
T ss_dssp EEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSEEEEE
T ss_pred HHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccEEEee
Confidence 3445577777888766 89999999999999999986 67899999999999999999999999999974 7899999
Q ss_pred CccccccCCcCCCc-hHHHHHHHHHHHHhhccccCCCeEEEEecCCC---CCchhhhhCCCCcceeeeecCCCHHHHHHH
Q 002169 396 ELDAIAPARKDGGE-ELSQRMVATLLNLMDGVCRTDGVLVIAATNRP---DSIEPALRRPGRLDREIEIAVPSPAQRLEI 471 (957)
Q Consensus 396 EiD~l~~~~~~~~~-~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~---~~ld~al~r~gRfd~~I~i~~P~~~~r~~I 471 (957)
|||.+.++++.+.. ....+++++|+..||++....+++||+|||+. +.+++++.|+||||+.+.++.|+.++|.+|
T Consensus 190 Eid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~i 269 (321)
T d1w44a_ 190 SLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQV 269 (321)
T ss_dssp CCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEE
T ss_pred hhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChHHHHHH
Confidence 99999998865433 34468999999999999888899999999973 457788899999999999999999999999
Q ss_pred HHHHHcCC
Q 002169 472 LHALLSGM 479 (957)
Q Consensus 472 l~~~l~~~ 479 (957)
++.+.+++
T Consensus 270 l~~~~~~~ 277 (321)
T d1w44a_ 270 LTRTGEGL 277 (321)
T ss_dssp EEECBTTC
T ss_pred HHHhccCc
Confidence 88665544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.87 E-value=3.8e-22 Score=211.38 Aligned_cols=196 Identities=22% Similarity=0.254 Sum_probs=145.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchh-H
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES-E 374 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~-e 374 (957)
+.|.|..+.++.+.+....... ...+....|+++||||||||||||++|+++|++++.+++.+++++++..+.+.. .
T Consensus 9 ~~~i~~~~~i~~i~~~~~~~~~--~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~ 86 (246)
T d1d2na_ 9 NGIIKWGDPVTRVLDDGELLVQ--QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 86 (246)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHH--HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCcCcCHHHHHHHHHHHHHHH--HHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchh
Confidence 4566766655555554433222 222344567889999999999999999999999999999999998877776655 4
Q ss_pred HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC-CCeEEEEecCCCCCchhhhhCCCC
Q 002169 375 QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGR 453 (957)
Q Consensus 375 ~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~-~~v~vI~ttN~~~~ld~al~r~gR 453 (957)
..++.+|+.|....|+||||||+|.+++.+..+. ....+++.+|+.+|++.... .+++||+|||+++.++++.++ +|
T Consensus 87 ~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~-~r 164 (246)
T d1d2na_ 87 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NA 164 (246)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TT
T ss_pred hhhhhhhhhhhhcccceeehhhhhhHhhhccccc-chhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhc-Cc
Confidence 6799999999999999999999999988765443 33467888999999987443 358899999999999876433 49
Q ss_pred cceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 454 LDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|+..|++ |+..+|.+|++.+.... .+.+.++..++..+.|..
T Consensus 165 F~~~i~~--P~~~~r~~il~~l~~~~--~~~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 165 FSTTIHV--PNIATGEQLLEALELLG--NFKDKERTTIAQQVKGKK 206 (246)
T ss_dssp SSEEEEC--CCEEEHHHHHHHHHHHT--CSCHHHHHHHHHHHTTSE
T ss_pred cceEEec--CCchhHHHHHHHHHhcc--CCChHHHHHHHHHcCCCc
Confidence 9998887 44445555555433221 236677788888877754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=4.9e-21 Score=201.20 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=164.6
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
.+.+|+|++|++++++.|.+++...... -.+..++|||||||||||++|+++|++++.+++.+++.+...
T Consensus 4 RP~~~~divGqe~~~~~l~~~i~~~~~~--------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~-- 73 (238)
T d1in4a2 4 RPKSLDEFIGQENVKKKLSLALEAAKMR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 73 (238)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred CCCcHHHcCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc--
Confidence 4558999999999999999998643221 234568999999999999999999999999999999877643
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCCc
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVN 784 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~~ 784 (957)
...+..++... ...+++|+||+|.+... ..+.++..++... ...+
T Consensus 74 ----~~~~~~~~~~~--~~~~~~~ide~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (238)
T d1in4a2 74 ----QGDMAAILTSL--ERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 134 (238)
T ss_dssp ----HHHHHHHHHHC--CTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CC
T ss_pred ----HHHHHHHHHhh--ccCCchHHHHHHHhhhH-------------HHhhcccceeeeeeeeeecCcccccccccCCCC
Confidence 23444444443 34579999999987432 2223333333211 1236
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 785 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 785 v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
+++|++||++..+++++++ ||...+.++.|+.+++..+++......+...+. .+..+++.+.| +.|.+.++++.+.
T Consensus 135 ~~~I~at~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~ 211 (238)
T d1in4a2 135 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVR 211 (238)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHH
T ss_pred eEEEEecCCCcccccccee--eeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 8899999999999999999 999999999999999999999988877765443 47888888887 8889889998887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 864 ISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 864 ~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
..+.... ...||.+++.++++.+
T Consensus 212 ~~~~~~~--~~~it~~~~~~al~~l 234 (238)
T d1in4a2 212 DMLTVVK--ADRINTDIVLKTMEVL 234 (238)
T ss_dssp HHHHHHT--CSSBCHHHHHHHHHHH
T ss_pred HHHHHhc--CCccCHHHHHHHHHhh
Confidence 7665554 5579999999988764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=2.5e-22 Score=220.05 Aligned_cols=179 Identities=24% Similarity=0.307 Sum_probs=140.8
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhc-CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc--cccccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF--SKWVGE 723 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l-~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~--~~~vg~ 723 (957)
.|+||+++|+.+.+++..++++..+.... ...+++++||+||||||||++||++|+.++.+|+.++++++. +.|.|+
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 58999999999999885544332221111 123678999999999999999999999999999999999997 458899
Q ss_pred hHHHHHHHHHHHHhC-----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc--------CCcEEEEEe
Q 002169 724 SEKAVRSLFAKARAN-----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ--------RVNVTVIAA 790 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~-----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~--------~~~v~VI~a 790 (957)
++..++.+|..|.+. +||||||||||++.+.+.... .......++++||..+|+... ..++++|++
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~-~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ 173 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 173 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCcc-cchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEec
Confidence 999999999998653 579999999999987654332 222334588999999997531 234556655
Q ss_pred ----cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHH
Q 002169 791 ----TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 791 ----TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~ 828 (957)
+++++.++|+++. ||+..+.++.|+..++.+|++.+
T Consensus 174 ga~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~~~~~Il~~~ 213 (309)
T d1ofha_ 174 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 213 (309)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred cchhhcCcccchhhhhh--hhheeeeccCCCHHHHHHHHHHH
Confidence 5777888898886 99999999999999999998653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=9.2e-20 Score=191.58 Aligned_cols=215 Identities=24% Similarity=0.296 Sum_probs=159.5
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
.+.+|+|++|++++++.|+.++.+... +-.++.++|||||||||||++|+++|++++.++..++++.....
T Consensus 4 RP~~~ddivGq~~~~~~L~~~i~~~~~--------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~- 74 (239)
T d1ixsb2 4 RPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP- 74 (239)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHHTT--------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc-
Confidence 466899999999999999999876422 23456789999999999999999999999999999998776331
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc----------------ccCCc
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL----------------HQRVN 784 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~----------------~~~~~ 784 (957)
+ .....+.... ...+|+||||+|.+... ....++..++.. ....+
T Consensus 75 -~----~~~~~~~~~~-~~~~i~~iDe~~~~~~~-------------~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 135 (239)
T d1ixsb2 75 -G----DLAAILANSL-EEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 135 (239)
T ss_dssp -H----HHHHHHHTTC-CTTCEEEEETGGGCCHH-------------HHHHHHHHHHHSEEEEECSCTTCCCEEEEECCC
T ss_pred -h----hhHHHHHhhc-cCCCeeeeecccccchh-------------HHHhhhhhhhhhhhhhhhccchhhhhcccCCCC
Confidence 1 1222222222 23469999999977432 233444444421 12335
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 785 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 785 v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
+.+|++||++....++.++ |+...+.+..|+.+++..+++..+...++..+ ..++.+++.+.| +.|.+.++++.+.
T Consensus 136 ~~~i~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~~ 212 (239)
T d1ixsb2 136 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 212 (239)
T ss_dssp CEEEEEESCCSSCSCGGGG--GCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred EEEEeeccCcccccchhhc--ccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7788899999888888888 77789999999999999999998887776544 357788899998 7777778887765
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 864 ISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 864 ~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
..+. ......||.+++.+++..+
T Consensus 213 ~~a~--~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 213 DFAQ--VAGEEVITRERALEALAAL 235 (239)
T ss_dssp HHHT--TSCCSCBCHHHHHHHHHHH
T ss_pred HHHH--HhCCCCcCHHHHHHHHhhh
Confidence 4443 3346779999999988754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.82 E-value=1.8e-20 Score=205.19 Aligned_cols=176 Identities=26% Similarity=0.378 Sum_probs=141.7
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhc--CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc--cccch
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSL--GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS--QNYGE 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l--~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~--~~~ge 372 (957)
.+.|+++.++.|.+.|..+..+..+... .-.+++++||+||||||||+||+++|+.++.+++.++++++.. .+.|+
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 3789999999999988554333111111 1236799999999999999999999999999999999999974 47899
Q ss_pred hHHHHHHHHHHHhcc-----CCeEEEEcCccccccCCcCCCchH-HHHHHHHHHHHhhccc--------cCCCeEEEEe-
Q 002169 373 SEQALHEVFDSASQS-----APAVVFIDELDAIAPARKDGGEEL-SQRMVATLLNLMDGVC--------RTDGVLVIAA- 437 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~-----~p~IL~IDEiD~l~~~~~~~~~~~-~~~i~~~Ll~~ld~l~--------~~~~v~vI~t- 437 (957)
.+..++.+|..|... +|+||||||+|.+++.+.....+. ...++++|+..||+.. ...++.+|++
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~g 174 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 174 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEecc
Confidence 999999999988653 589999999999999877665544 3457888999999742 2345666766
Q ss_pred ---cCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH
Q 002169 438 ---TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 438 ---tN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~ 474 (957)
+++++.++|++++ ||+..+.++.|+..++.+|++.
T Consensus 175 a~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~~~~~Il~~ 212 (309)
T d1ofha_ 175 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 212 (309)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred chhhcCcccchhhhhh--hhheeeeccCCCHHHHHHHHHH
Confidence 5678888899986 9999999999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=2.6e-18 Score=180.08 Aligned_cols=196 Identities=22% Similarity=0.299 Sum_probs=151.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|++++|++.+++.|++++...... -.+..++|||||||||||++|+++|++++.++..+++.+....
T Consensus 6 ~~~~divGqe~~~~~l~~~i~~~~~~-------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~---- 74 (238)
T d1in4a2 6 KSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---- 74 (238)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH----
T ss_pred CcHHHcCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccH----
Confidence 46889999999999999998765333 1345689999999999999999999999999999998776432
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc----------------ccCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV----------------CRTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l----------------~~~~~v~vI~ 436 (957)
..+..++... ...+++|+||+|.+.+.. ...++..++.. ....++++|+
T Consensus 75 --~~~~~~~~~~--~~~~~~~ide~~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 139 (238)
T d1in4a2 75 --GDMAAILTSL--ERGDVLFIDEIHRLNKAV-----------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 139 (238)
T ss_dssp --HHHHHHHHHC--CTTCEEEEETGGGCCHHH-----------HHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred --HHHHHHHHhh--ccCCchHHHHHHHhhhHH-----------HhhcccceeeeeeeeeecCcccccccccCCCCeEEEE
Confidence 2334444443 345799999999985322 22233333321 1234689999
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
+||.+..+++++++ ||...+.++.|+.+++..+++.........+++..++.++..+.| ..+.+..+++.+...+..
T Consensus 140 at~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~~~ 216 (238)
T d1in4a2 140 ATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTV 216 (238)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcccccccee--eeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999988888899999999998877 567777777776655544
Q ss_pred H
Q 002169 517 R 517 (957)
Q Consensus 517 r 517 (957)
.
T Consensus 217 ~ 217 (238)
T d1in4a2 217 V 217 (238)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=7.4e-17 Score=169.07 Aligned_cols=191 Identities=21% Similarity=0.302 Sum_probs=141.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+|++++|.++.++.|+.++...... -.+..++||||||||||||+|+++|++++.++..++++..... +
T Consensus 5 P~~~ddivGq~~~~~~L~~~i~~~~~~-------~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~--~ 75 (239)
T d1ixsb2 5 PKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--G 75 (239)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHHTTS-------SSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH--H
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc--h
Confidence 357889999999999999998765322 2346789999999999999999999999999999998776432 2
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc----------------ccCCCeEEE
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV----------------CRTDGVLVI 435 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l----------------~~~~~v~vI 435 (957)
..... .... ....+|++|||+|.+.+.. ...++..|+.. ....++++|
T Consensus 76 ~~~~~----~~~~-~~~~~i~~iDe~~~~~~~~-----------~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i 139 (239)
T d1ixsb2 76 DLAAI----LANS-LEEGDILFIDEIHRLSRQA-----------EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 139 (239)
T ss_dssp HHHHH----HHTT-CCTTCEEEEETGGGCCHHH-----------HHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEE
T ss_pred hhHHH----HHhh-ccCCCeeeeecccccchhH-----------HHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEE
Confidence 22222 2222 1235699999999885321 22344444321 234567888
Q ss_pred EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 436 ~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
++|+++....++.++ |+...+.+..|+.+++..++...+......+++..++.++..+.|- .+....+++.+
T Consensus 140 ~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd-~R~a~~~l~~~ 211 (239)
T d1ixsb2 140 GATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRV 211 (239)
T ss_dssp EEESCCSSCSCGGGG--GCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred eeccCcccccchhhc--ccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 899888887777777 6777899999999999999999999888888899999999999883 34444444443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.2e-16 Score=167.98 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=150.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|+|++|++++++.|..++.. -+.+..+|||||||||||++|++++++++.
T Consensus 5 KyrP~~~~dlig~~~~~~~L~~~i~~------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~ 72 (239)
T d1njfa_ 5 KWRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 72 (239)
T ss_dssp HTCCSSGGGSCSCHHHHHHHHHHHHT------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hhCCCCHHHccChHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence 34556899999999999999888753 234667999999999999999999988643
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.++..+.. ....++.+++.+.. +...|++|||+|.+ ....++
T Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l-------------~~~~q~ 133 (239)
T d1njfa_ 73 DNCREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFN 133 (239)
T ss_dssp HHHHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHH
T ss_pred hHHHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccC-------------CHHHHH
Confidence 24455543321 23446666666533 23469999999976 345567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ..++.+|++||+++.+.+++++ || ..+.|+.|+.++..+++...+...+.. ++..++.++..+.|
T Consensus 134 ~Llk~lE~~--~~~~~~il~tn~~~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G 208 (239)
T d1njfa_ 134 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 208 (239)
T ss_dssp HHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT
T ss_pred HHHHHHhcC--CCCeEEEEEcCCccccChhHhh--hh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC
Confidence 889999843 4578999999999999999999 88 588999999999888888777654433 34457888888888
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+.|.+.++++.|. ... ...|+.+++.+++
T Consensus 209 -d~R~ain~l~~~~----~~~--~~~I~~~~v~~~l 237 (239)
T d1njfa_ 209 -SLRDALSLTDQAI----ASG--DGQVSTQAVSAML 237 (239)
T ss_dssp -CHHHHHHHHHHHH----HHT--TTSBCHHHHHHHH
T ss_pred -CHHHHHHHHHHHH----HhC--CCCcCHHHHHHHh
Confidence 6666666665443 222 4569999998776
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=2.4e-17 Score=171.38 Aligned_cols=213 Identities=20% Similarity=0.168 Sum_probs=147.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----cEEEEeCC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-----NFLAVKGP 714 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-----~~i~v~~~ 714 (957)
..+.+++|++|++++++.|+.++.. ....++||+||||||||++|+++|++++. .++.++.+
T Consensus 8 yrP~~~~divg~~~~~~~L~~~i~~-------------~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~ 74 (227)
T d1sxjc2 8 YRPETLDEVYGQNEVITTVRKFVDE-------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 74 (227)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEeccc
Confidence 4566899999999999999988753 12236999999999999999999998743 45667766
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
+..+.............+.........+++|||+|.+. ....+.|+..|+.. ...+.++++||.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~-------------~~~~~~Ll~~le~~--~~~~~~~~~~~~~ 139 (227)
T d1sxjc2 75 DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-------------NAAQNALRRVIERY--TKNTRFCVLANYA 139 (227)
T ss_dssp SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-------------HHHHHHHHHHHHHT--TTTEEEEEEESCG
T ss_pred ccCCeeeeecchhhccccccccCCCeEEEEEeccccch-------------hhHHHHHHHHhhhc--ccceeeccccCcH
Confidence 65432111111110011111112334699999999763 34566788888754 3478899999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
..+++++++ || ..+.|++|+..+..+++...+...++. ++..++.+++.+.| +.|.+.+.++.+... ....+.
T Consensus 140 ~~i~~~i~s--r~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G-d~R~ain~Lq~~~~~--~~~~~~ 213 (227)
T d1sxjc2 140 HKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKAT--LDNPDE 213 (227)
T ss_dssp GGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTT--TCSSSC
T ss_pred HHhHHHHHH--HH-hhhccccccccccccccccccccccccCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHh--cCCCCC
Confidence 999999998 87 578999999999999999888776654 34457888999888 444444444332211 112245
Q ss_pred CCCCHHHHHHHHH
Q 002169 874 SRITMQHLKTAIR 886 (957)
Q Consensus 874 ~~It~~d~~~al~ 886 (957)
..|+.+++.+++.
T Consensus 214 ~~It~~~v~e~~g 226 (227)
T d1sxjc2 214 DEISDDVIYECCG 226 (227)
T ss_dssp CCBCHHHHHHHTT
T ss_pred CeeCHHHHHHHhC
Confidence 6799999988763
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=1e-16 Score=167.10 Aligned_cols=200 Identities=23% Similarity=0.273 Sum_probs=145.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
.+.+.+|+|++|++++++.|+.++.. ....++||+||||||||++|+++|++++ .+++.+++
T Consensus 17 ky~P~~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~ 83 (231)
T d1iqpa2 17 KYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 83 (231)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEec
Confidence 44566899999999999999988753 1234699999999999999999999864 47888888
Q ss_pred CCcccccccchHHHHHHHHHHH------HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKA------RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A------~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++..+. ..++..+... ....+.|+++||+|.+. ....+.|+..++.. ..++.+
T Consensus 84 s~~~~~------~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~-------------~~~~~~ll~~l~~~--~~~~~~ 142 (231)
T d1iqpa2 84 SDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-------------QDAQQALRRTMEMF--SSNVRF 142 (231)
T ss_dssp TCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHT--TTTEEE
T ss_pred Ccccch------hHHHHHHHHHHhhhhccCCCceEEeehhhhhcc-------------hhHHHHHhhhcccC--CcceEE
Confidence 764321 1112222222 23456799999999663 33445677777643 457889
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.+..+++++.+ || ..+.+++|+..+...+++..+.+.++. .+..++.+++.+.| +.|++.+.++.+..
T Consensus 143 i~~~n~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g-diR~ai~~Lq~~~~-- 216 (231)
T d1iqpa2 143 ILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-- 216 (231)
T ss_dssp EEEESCGGGSCHHHHH--TE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT--
T ss_pred EeccCChhhchHhHhC--cc-ccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH--
Confidence 9999999999999998 88 479999999999999999999887764 34457888888887 56665555554321
Q ss_pred HHHhcCCCCCCHHHHHH
Q 002169 867 IEENLDASRITMQHLKT 883 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~ 883 (957)
....|+.+++..
T Consensus 217 -----~~~~it~e~v~~ 228 (231)
T d1iqpa2 217 -----LDKKITDENVFM 228 (231)
T ss_dssp -----TCSEECHHHHHH
T ss_pred -----cCCCcCHHHHHh
Confidence 134577776643
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=7.9e-17 Score=170.94 Aligned_cols=163 Identities=25% Similarity=0.396 Sum_probs=130.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEecc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGP 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~ 363 (957)
.++.+.|.+++++++.+++ ......+++|+||||+|||++++.+|..+ +..++.++..
T Consensus 16 ~ld~~igRd~Ei~~l~~iL------------~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~ 83 (268)
T d1r6bx2 16 GIDPLIGREKELERAIQVL------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 83 (268)
T ss_dssp CSCCCCSCHHHHHHHHHHH------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCCcccChHHHHHHHHHHH------------hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeec
Confidence 4667899999999988883 34456789999999999999999999754 5678999999
Q ss_pred cccc--cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 364 EVVS--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 364 ~l~~--~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.++. +|.|+.+.+++.+++.+......||||||++.+.......++.. .+-++|..+-.++.+.+|++|++.
T Consensus 84 ~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~------d~a~~Lkp~L~rg~i~vIgatT~e 157 (268)
T d1r6bx2 84 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV------DAANLIKPLLSSGKIRVIGSTTYQ 157 (268)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH------HHHHHHSSCSSSCCCEEEEEECHH
T ss_pred hHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccc------cHHHHhhHHHhCCCCeEEEeCCHH
Confidence 9987 57899999999999999888889999999999987654443321 245566666678899999999763
Q ss_pred C-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc
Q 002169 442 D-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 442 ~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+ +-|++|.| ||.. |.+..|+.++-.+|++....
T Consensus 158 ey~~~~e~d~al~r--rF~~-I~V~Eps~e~t~~IL~~~~~ 195 (268)
T d1r6bx2 158 EFSNIFEKDRALAR--RFQK-IDITEPSIEETVQIINGLKP 195 (268)
T ss_dssp HHHCCCCCTTSSGG--GEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcHHHHh--hhcc-cccCCCCHHHHHHHHHHhhH
Confidence 3 56799998 9965 99999999999999987543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=8e-16 Score=160.26 Aligned_cols=214 Identities=17% Similarity=0.155 Sum_probs=152.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh------CCcEEEEe
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVK 712 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------~~~~i~v~ 712 (957)
...+.+|+|++|++++++.++.++.. ....+++|+||||||||++|+++|+++ ....+.++
T Consensus 5 ky~P~~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~ 71 (237)
T d1sxjd2 5 KYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 71 (237)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hhCCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhhee
Confidence 35677899999999999999887742 123459999999999999999999986 56677777
Q ss_pred CCCcccccc-cchHHHH---------HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 713 GPELFSKWV-GESEKAV---------RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 713 ~~~l~~~~v-g~~~~~i---------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
.....+... ....+.. ...+.........|+||||+|.+.. ...+.++..++.. .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~-------------~~~~~l~~~~~~~--~ 136 (237)
T d1sxjd2 72 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-------------DAQSALRRTMETY--S 136 (237)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-------------HHHHHHHHHHHHT--T
T ss_pred ccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCH-------------HHHHHHhhccccc--c
Confidence 765533211 1111110 0111122223345999999997742 3344555555533 4
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
....+|.+++....+.+++.+ || ..+.|++|+..+..++++..+.+.++. ++..+..+|+.+.| +.|.+.++++.
T Consensus 137 ~~~~~i~~~~~~~~~~~~l~s--r~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g-d~R~ai~~L~~ 212 (237)
T d1sxjd2 137 GVTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQS 212 (237)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHH
T ss_pred ccccccccccccccccccccc--hh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 467788889999999999998 88 588999999999999999988876654 34457888999888 66776777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 862 AAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al 885 (957)
++..+.... +...||.+++++++
T Consensus 213 ~~~~~~~~~-~~~~It~~~i~e~~ 235 (237)
T d1sxjd2 213 ASKGAQYLG-DGKNITSTQVEELA 235 (237)
T ss_dssp THHHHHHHC-SCCCCCHHHHHHHH
T ss_pred HHHhchhcC-CCCccCHHHHHHhh
Confidence 766554433 45679999998775
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.65 E-value=8.1e-16 Score=160.16 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=134.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
+.+++++.|.++.++.|+.++... ...++||+||||||||++|+++|+++. ..++++++++..
T Consensus 20 P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~ 87 (231)
T d1iqpa2 20 PQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 87 (231)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCccc
Confidence 457899999999999999987432 234799999999999999999999874 367888887654
Q ss_pred ccccchhHHHHHHHHHH--HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 367 SQNYGESEQALHEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+.. ............ .....+.|+++||+|.+... ....|+..++. ....+.+|+++|....+
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~-----------~~~~ll~~l~~--~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 88 GIN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEM--FSSNVRFILSCNYSSKI 152 (231)
T ss_dssp HHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHH--TTTTEEEEEEESCGGGS
T ss_pred chh--HHHHHHHHHHhhhhccCCCceEEeehhhhhcchh-----------HHHHHhhhccc--CCcceEEEeccCChhhc
Confidence 321 111222222211 22335789999999987532 23446666665 34578999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
++++++ |+. .+.++.|+..+...+++..+.+.+..+++..++.+++.+.|
T Consensus 153 ~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g 202 (231)
T d1iqpa2 153 IEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 202 (231)
T ss_dssp CHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred hHhHhC--ccc-cccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 999998 875 49999999999999999999999888899999999998876
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=9.4e-16 Score=162.56 Aligned_cols=222 Identities=18% Similarity=0.231 Sum_probs=162.2
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~ 713 (957)
.++.++|.++..+++.+.+. .+...+++|+||||+|||++++.+|... +..++.++.
T Consensus 16 ~ld~~igRd~Ei~~l~~iL~-------------r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~ 82 (268)
T d1r6bx2 16 GIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 82 (268)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCcccChHHHHHHHHHHHh-------------cCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence 56778999988888877763 3456789999999999999999999763 568999999
Q ss_pred CCccc--ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 714 PELFS--KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 714 ~~l~~--~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
..+++ +|.|+.+..++.+++.+......||||||+|.+....+..++ .. .+-..|...-.++++.+|++|
T Consensus 83 ~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~----~~----d~a~~Lkp~L~rg~i~vIgat 154 (268)
T d1r6bx2 83 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG----QV----DAANLIKPLLSSGKIRVIGST 154 (268)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC----HH----HHHHHHSSCSSSCCCEEEEEE
T ss_pred chHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCc----cc----cHHHHhhHHHhCCCCeEEEeC
Confidence 99986 689999999999999999888899999999999865433221 11 234445555567789999998
Q ss_pred CCC-----CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----CCC-CcccHHHHHHHc-----cCCcHHHHH
Q 002169 792 NRP-----DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCS-SDVNIRELACLS-----EGCTGADIS 856 (957)
Q Consensus 792 N~~-----~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~----~~~-~~~~l~~la~~t-----~g~sg~dl~ 856 (957)
+.. ..-|++|.| || ..|.+..|+.++..+|++.....+ ++. .+..+..+...+ ..+-+....
T Consensus 155 T~eey~~~~e~d~al~r--rF-~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAI 231 (268)
T d1r6bx2 155 TYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 231 (268)
T ss_dssp CHHHHHCCCCCTTSSGG--GE-EEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CHHHHHHHHhhcHHHHh--hh-cccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHH
Confidence 743 345999999 99 489999999999999998755432 222 222334443333 233466777
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHhhC
Q 002169 857 LICREAAISAIEENL--DASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 857 ~l~~eA~~~a~~~~~--~~~~It~~d~~~al~~~~ 889 (957)
.++.+|+..+..... ....|+..|++..+.++.
T Consensus 232 dllDea~a~~~~~~~~~~~~~i~~~di~~~i~~~~ 266 (268)
T d1r6bx2 232 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 266 (268)
T ss_dssp HHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHh
Confidence 799999877765432 345688999888777653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=4.2e-16 Score=164.20 Aligned_cols=223 Identities=18% Similarity=0.207 Sum_probs=138.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchh-hcHHHHH---hcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQ-KHQEAFK---RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~-~~~~~~~---~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
..+.+|+|++|+++++++|++++.... ..+..+. ..+....+++|||||||||||++|+++|++++.+++.++.++
T Consensus 8 y~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~ 87 (253)
T d1sxja2 8 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 87 (253)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 456689999999999999999886321 1111111 123445567999999999999999999999999999999988
Q ss_pred cccccccchH-H-HH----------HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCC
Q 002169 716 LFSKWVGESE-K-AV----------RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 783 (957)
Q Consensus 716 l~~~~vg~~~-~-~i----------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 783 (957)
..+.+..... . .+ ...........+.++++||++.+.... ......++...... ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~----------~~~~~~~~~~~~~~--~~ 155 (253)
T d1sxja2 88 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRKT--ST 155 (253)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHHC--SS
T ss_pred chhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccch----------hhhhHHHhhhhccc--cc
Confidence 7654321100 0 00 000001112346799999999874321 11122333333321 22
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
.++++++++....++ .+. |+...|+|++|+.+++..+++..+.+.++. ++..++++++.+.| |++.+++..
T Consensus 156 ~ii~i~~~~~~~~~~-~l~---~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G----DiR~ai~~L 227 (253)
T d1sxja2 156 PLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINLL 227 (253)
T ss_dssp CEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHHHH
T ss_pred ccccccccccccccc-ccc---ceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC----cHHHHHHHH
Confidence 444554444444454 344 455799999999999999999988654432 33468889998887 776666532
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 863 AISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
-..+ .. ...++.+++.+..+
T Consensus 228 ~~~~--~~--~~~i~~~~~~~~~~ 247 (253)
T d1sxja2 228 STIS--TT--TKTINHENINEISK 247 (253)
T ss_dssp THHH--HH--SSCCCTTHHHHHHH
T ss_pred HHHH--Hc--CCCCCHHHHHHHhc
Confidence 2222 22 34566666654443
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=3.5e-15 Score=154.67 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=144.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----cEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-----NFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-----~~i~v~~ 713 (957)
...+.+++|++|++++++.|++++.. ....++||+||||||||++|+++|++++. .++.+++
T Consensus 8 KyrP~~~~d~ig~~~~~~~L~~~~~~-------------~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~ 74 (224)
T d1sxjb2 8 KYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 74 (224)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccc
Confidence 34567899999999999999988752 12346999999999999999999998753 5788888
Q ss_pred CCcccccccchHHHHHHHHHHHH-------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++..+. ..++..+.... .....++++||+|.+.. ...+.|+..++.. .....
T Consensus 75 ~~~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~-------------~~~~~ll~~~e~~--~~~~~ 133 (224)
T d1sxjb2 75 SDDRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------GAQQALRRTMELY--SNSTR 133 (224)
T ss_dssp TSCCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-------------HHHHTTHHHHHHT--TTTEE
T ss_pred cccCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccch-------------hHHHHHhhhcccc--cccee
Confidence 765432 22222222221 12346999999997743 3445566777643 44788
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
+|++|+..+.+.+++++ || ..|.|++|+.++...+++..+++.++.- +..+..++..+.| +.|.+-+.++.+.
T Consensus 134 ~i~~~~~~~~i~~~l~s--r~-~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G-d~R~ai~~Lq~~~-- 207 (224)
T d1sxjb2 134 FAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV-- 207 (224)
T ss_dssp EEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH--
T ss_pred eeeccCchhhhhhHHHH--HH-HHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH--
Confidence 88999999999999999 88 5799999999999999998887655542 3347788888887 5555555554332
Q ss_pred HHHHhcCCCCCCHHHHHHHH
Q 002169 866 AIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 866 a~~~~~~~~~It~~d~~~al 885 (957)
.. ...|+.+.+.+.+
T Consensus 208 --~~---~~~i~~~~i~~~~ 222 (224)
T d1sxjb2 208 --AG---HGLVNADNVFKIV 222 (224)
T ss_dssp --HH---HSSBCHHHHHHHH
T ss_pred --Hc---CCCcCHHHHHHHh
Confidence 11 2467888777655
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=1.3e-17 Score=186.54 Aligned_cols=164 Identities=25% Similarity=0.373 Sum_probs=110.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
-.++.+.|.+.+++++.+++ ......+++|+||||+|||+++..+|..+ +..++.++.
T Consensus 19 g~ld~~~gr~~ei~~~~~~L------------~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~ 86 (387)
T d1qvra2 19 GKLDPVIGRDEEIRRVIQIL------------LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 86 (387)
T ss_dssp TCSCCCCSCHHHHHHHHHHH------------HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCCCCcCcHHHHHHHHHHH------------hcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence 34678899999999988884 23345678999999999999999999754 467899999
Q ss_pred ccccc--cccchhHHHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 363 PEVVS--QNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 363 ~~l~~--~~~ge~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
..++. +|.|+.+.++..++..+.... +.||||||++.+.+.....++ ..+ -++|..+-.++.+.+|++|.
T Consensus 87 ~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~---~d~----a~~Lkp~L~rg~~~~I~~tT 159 (387)
T d1qvra2 87 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDA----GNMLKPALARGELRLIGATT 159 (387)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHHTTCCCEEEEEC
T ss_pred hhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCc---ccH----HHHHHHHHhCCCcceeeecC
Confidence 99987 467999999999999987764 678999999999865433221 122 23333333568899999997
Q ss_pred CCC----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 440 RPD----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 440 ~~~----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
+.+ +-|++|.| ||.. |.+..|+.++-..||+.....
T Consensus 160 ~~ey~~~e~d~al~r--rF~~-v~v~ep~~~~~~~il~~~~~~ 199 (387)
T d1qvra2 160 LDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEK 199 (387)
T ss_dssp HHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHH--hccc-ccCCCCcHHHHHHHHHHHHHH
Confidence 522 34789998 9965 999999999999999876544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=4.4e-15 Score=156.28 Aligned_cols=197 Identities=19% Similarity=0.310 Sum_probs=134.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhh--hh---hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVK--ST---LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~--~~---~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
+.+|++++|.++.+++|++++...... .. ....+.....++||||||||||||+|+++|++++.+++.+++++..
T Consensus 10 P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~ 89 (253)
T d1sxja2 10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 89 (253)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccch
Confidence 356889999999999999998654322 11 1233455667999999999999999999999999999999998765
Q ss_pred ccccchhHHHHHHHHH--------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCe
Q 002169 367 SQNYGESEQALHEVFD--------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 432 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~--------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v 432 (957)
+.+.. ...+...+. ......+.++++||+|.+...... ....+...... ....+
T Consensus 90 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~--------~~~~~~~~~~~--~~~~i 157 (253)
T d1sxja2 90 SKTLL--NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG--------GVGQLAQFCRK--TSTPL 157 (253)
T ss_dssp CHHHH--HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT--------HHHHHHHHHHH--CSSCE
T ss_pred hhHHH--HHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhh--------hhHHHhhhhcc--ccccc
Confidence 54321 111110000 011224679999999998654321 12233333332 22344
Q ss_pred EEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 433 LVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 433 ~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
+++++++....+++ ++ |+...|+|+.|+.+++..+++..+.+.+..+++..++.++..+.| |++.++.
T Consensus 158 i~i~~~~~~~~~~~-l~---~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G----DiR~ai~ 225 (253)
T d1sxja2 158 ILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVIN 225 (253)
T ss_dssp EEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHH
T ss_pred cccccccccccccc-cc---ceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC----cHHHHHH
Confidence 55544445455554 54 445779999999999999999998877777888899999998876 6665543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=4.4e-15 Score=155.79 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=133.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV---------------- 355 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~---------------- 355 (957)
+.+|+++.|.++.++.|+.++... ..+..+|||||||||||++|+++++.++.
T Consensus 8 P~~~~dlig~~~~~~~L~~~i~~~-----------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~ 76 (239)
T d1njfa_ 8 PQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 76 (239)
T ss_dssp CSSGGGSCSCHHHHHHHHHHHHTT-----------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred CCCHHHccChHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHH
Confidence 457899999999999999886432 23567999999999999999999988743
Q ss_pred --------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 356 --------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 356 --------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
.++.++..+.. .-..++.+++.+.. ....|++|||+|.+. ....+.|+..|
T Consensus 77 ~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~-----------~~~q~~Llk~l 139 (239)
T d1njfa_ 77 EIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKTL 139 (239)
T ss_dssp HHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHHH
T ss_pred HHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccCC-----------HHHHHHHHHHH
Confidence 23445443321 12345666665432 234699999999983 23346688888
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
+.. ..++.+|++||.++.+.+++++ |+ ..+.++.|+.++..+++...+...+..+++..++.++..+.|
T Consensus 140 E~~--~~~~~~il~tn~~~~i~~~i~S--Rc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G 208 (239)
T d1njfa_ 140 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 208 (239)
T ss_dssp HSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT
T ss_pred hcC--CCCeEEEEEcCCccccChhHhh--hh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC
Confidence 863 4678999999999999999999 77 458999999999999999988877778899999999998877
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=3.7e-15 Score=154.54 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=131.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----cEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----NLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-----~~i~i~~~~l~ 366 (957)
+..++++.|.++.++.|+.++... ...++||+||||||||++|+++|++++. .++..+.++..
T Consensus 10 P~~~~divg~~~~~~~L~~~i~~~------------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~ 77 (227)
T d1sxjc2 10 PETLDEVYGQNEVITTVRKFVDEG------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 77 (227)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccC
Confidence 457889999999999999986432 1225999999999999999999998753 35666666543
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
+.............+.........+++|||+|.+.. .....|+..|+.. ...+.+++++|.+..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~-----------~~~~~Ll~~le~~--~~~~~~~~~~~~~~~i~~ 144 (227)
T d1sxjc2 78 GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERY--TKNTRFCVLANYAHKLTP 144 (227)
T ss_dssp SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCH
T ss_pred CeeeeecchhhccccccccCCCeEEEEEeccccchh-----------hHHHHHHHHhhhc--ccceeeccccCcHHHhHH
Confidence 322111111100111111123356999999998742 2345577777764 457899999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
++++ |+ ..+.|..|+.++...++...+...+..+++..++.+++.+.|
T Consensus 145 ~i~s--r~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G 192 (227)
T d1sxjc2 145 ALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 192 (227)
T ss_dssp HHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred HHHH--HH-hhhccccccccccccccccccccccccCCHHHHHHHHHHcCC
Confidence 9998 76 458999999999999999999988888899999999999877
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.3e-14 Score=152.42 Aligned_cols=187 Identities=14% Similarity=0.199 Sum_probs=123.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---EEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---~i~v~~~~l 716 (957)
..+.+|+|++|++++++.|+.++... ....++|||||||||||++|+++|+++..+ ...+.....
T Consensus 5 y~P~~~~diig~~~~~~~L~~~~~~~------------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~ 72 (252)
T d1sxje2 5 YRPKSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 72 (252)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred cCCCCHHHccCcHHHHHHHHHHHHcC------------CCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccc
Confidence 45678999999999999998776431 234469999999999999999999986211 111111000
Q ss_pred -------------cc--------ccccc-hHHHHHHHHHHHH--------------hCCCeEEEEeCCchhhhhcCCCCC
Q 002169 717 -------------FS--------KWVGE-SEKAVRSLFAKAR--------------ANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 717 -------------~~--------~~vg~-~~~~ir~~f~~A~--------------~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
.. ...+. ........+.... .....+++|||+|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~-------- 144 (252)
T d1sxje2 73 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-------- 144 (252)
T ss_dssp ----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------
T ss_pred cccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccc--------
Confidence 00 00010 1111122221111 1234599999999763
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC--CCCcc
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP--CSSDV 838 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~--~~~~~ 838 (957)
....+.++..++.. ..++.+|++||.++.+++++++ || ..|+|++|+.++..++++..+.+.+ +..+.
T Consensus 145 -----~~~~~~l~~~~e~~--~~~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~ 214 (252)
T d1sxje2 145 -----KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKD 214 (252)
T ss_dssp -----HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred -----cccchhhhcccccc--cccccceeeeccccchhhhhhc--ch-heeeecccchhhHHHHHHHHHHHcCCCCCcHH
Confidence 33455666777643 4578899999999999999998 98 5899999999999999988776543 33445
Q ss_pred cHHHHHHHccCCcHHHHHHHHH
Q 002169 839 NIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 839 ~l~~la~~t~g~sg~dl~~l~~ 860 (957)
.++.++..+.| |++.+++
T Consensus 215 ~l~~i~~~s~G----d~R~ai~ 232 (252)
T d1sxje2 215 ILKRIAQASNG----NLRVSLL 232 (252)
T ss_dssp HHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHcCC----cHHHHHH
Confidence 57888988888 5555544
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.58 E-value=1.3e-14 Score=153.95 Aligned_cols=230 Identities=9% Similarity=-0.002 Sum_probs=147.8
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCC---cceeeCCCCChhhHHHHHHHHHhC---------CcEEE
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT---GILMFGPPGCSKTLMARAVASEAG---------LNFLA 710 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~---giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~ 710 (957)
...+.+.|.+...+.|.+++..+..+ +..+.. .++|+||||||||++++++++++. ..++.
T Consensus 13 ~~P~~~~~Re~e~~~l~~~l~~~~~~-------~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~ 85 (287)
T d1w5sa2 13 YIPPELRVRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 85 (287)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHT-------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHc-------CCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeee
Confidence 34467888888888887776543222 222222 367889999999999999998762 23444
Q ss_pred EeCCCcccc----------------cccchHHHHH-HHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 711 VKGPELFSK----------------WVGESEKAVR-SLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 711 v~~~~l~~~----------------~vg~~~~~ir-~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
+++...... +.+.....+. .++.... ...+.++++||+|.+....... ......+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~----~~~~~~l~~l 161 (287)
T d1w5sa2 86 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA----AEDLYTLLRV 161 (287)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC----HHHHHHHHTH
T ss_pred eccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc----hhHHHHHHHH
Confidence 444332211 1233333333 3333332 3456788999999886443211 1112222333
Q ss_pred HHHHhccccCCcEEEEEecCCCCC------CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC---CcccHHHH
Q 002169 773 LVELDGLHQRVNVTVIAATNRPDK------IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS---SDVNIREL 843 (957)
Q Consensus 773 L~~ld~~~~~~~v~VI~aTN~~~~------id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~---~~~~l~~l 843 (957)
...+..........+|+++|.++. .++.+.+ ||...++|++|+.++..+|++..++..... ++..++.+
T Consensus 162 ~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~i 239 (287)
T d1w5sa2 162 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 239 (287)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHhcchhhcccceeEEeecccHHHHHHHHhhccchhc--ccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHH
Confidence 344444444557778888776654 3567777 899999999999999999999887642222 23346777
Q ss_pred HHHccCC-----cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 844 ACLSEGC-----TGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 844 a~~t~g~-----sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
|+.+.++ ..|.+.++|++|+..|..+. ...||.+|+++|+.+
T Consensus 240 a~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~--~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 240 SDVYGEDKGGDGSARRAIVALKMACEMAEAMG--RDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHH
T ss_pred HHHHhccccCCCCHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHhc
Confidence 7766322 57888899999999888775 678999999999874
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.57 E-value=1.6e-15 Score=168.18 Aligned_cols=190 Identities=16% Similarity=0.092 Sum_probs=124.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc-ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW-VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~-vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
|.+.+++++||||||||||++|+++|+.++.+|+.+++++..+.+ ++... .+.+.+||+++.....
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~-------------~~~~~l~d~~~~~~~~ 216 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI-------------DQFLVVFEDVKGTGGE 216 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGT-------------TCSCEEETTCCCSTTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHH-------------HHHHHHHHHHHHhhhh
Confidence 567778899999999999999999999999999999999875542 33322 2334455555443322
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhcccc------CC------cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHH
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQ------RV------NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDRE 822 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~------~~------~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~ 822 (957)
+..... ...-.-++.+...+++... .. ...+|+|||. .+.+++||+||++.+++..|+...+.
T Consensus 217 ~~~~~~--~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~~~~~~~~~ 291 (362)
T d1svma_ 217 SRDLPS--GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHC 291 (362)
T ss_dssp TTTCCC--CSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS---CCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred ccCCCC--eEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccc---ccccccccccCceEEeecCCCcHHHH
Confidence 211110 1111112233333443210 00 1137889995 45577889999999999888876653
Q ss_pred -HHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 823 -EIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 823 -~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
++++.++++..+. .+.+.++..+.+++++|++.++++++..+.++. ...++...|.+...+
T Consensus 292 ~~~l~~i~~~~~l~--~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l--~~ei~~~~~~~~k~~ 353 (362)
T d1svma_ 292 LERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERL--DKEFSLSVYQKMKFN 353 (362)
T ss_dssp HHTCTHHHHTTCTT--CHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred HHHHHHHhcccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH--hhhccHHHHHHHHHH
Confidence 5666777766654 456778888999999999999999988776554 234555555544433
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.55 E-value=1.4e-13 Score=145.10 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=149.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL 716 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l 716 (957)
|....+.++|.+..++.+.+++...++. .-.++.+++|+||||||||++|+++++.+ +..++.+++...
T Consensus 11 ~~y~p~~l~~Re~ei~~l~~~l~~~l~~-------~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~ 83 (276)
T d1fnna2 11 PSYVPKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83 (276)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhC-------CCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence 4445567899999998888887543222 12456789999999999999999999987 356677766543
Q ss_pred ccc----------------cccchHHH-HHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc
Q 002169 717 FSK----------------WVGESEKA-VRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 778 (957)
Q Consensus 717 ~~~----------------~vg~~~~~-ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~ 778 (957)
... ..+..... ...+.+... ...+.++++|++|.+.... ......++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~~~~~~~~~~ 153 (276)
T d1fnna2 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDI----------LSTFIRLGQEADK 153 (276)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHH----------HHHHHHHTTCHHH
T ss_pred hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhh----------hhhHHHHHhcccc
Confidence 221 11222222 233333333 3456788899998663221 1111222222221
Q ss_pred cccCCcEEEEEecCCC---CCCChhhhCCCCc-ceecccCCCCHHHHHHHHHHHHhcCCC---CCcccHHHHHHHc----
Q 002169 779 LHQRVNVTVIAATNRP---DKIDPALLRPGRF-DRLLYVGPPNETDREEIFRIHLRKIPC---SSDVNIRELACLS---- 847 (957)
Q Consensus 779 ~~~~~~v~VI~aTN~~---~~id~aLlr~gRf-d~~i~~~~P~~~er~~Il~~~l~~~~~---~~~~~l~~la~~t---- 847 (957)
.....+.+|++++.. +.+++++.+ |+ ...|.|++|+.+++.+|++.++..... ..+..++.++..+
T Consensus 154 -~~~~~~~~i~~~~~~~~~~~~~~~~~~--r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~ 230 (276)
T d1fnna2 154 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 230 (276)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred -ccccceEEeecCCchhhhhhcchhhhh--hhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhh
Confidence 234467888888874 467888877 54 346899999999999999987764222 2334456666654
Q ss_pred -----cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 848 -----EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 848 -----~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.| +.|.+.++|+.|+..|..+. ...|+.+|+++|.+++.
T Consensus 231 ~~~~~~G-~~R~a~~ll~~a~~~A~~~~--~~~I~~edv~~A~~~~~ 274 (276)
T d1fnna2 231 PLDTNRG-DARLAIDILYRSAYAAQQNG--RKHIAPEDVRKSSKEVL 274 (276)
T ss_dssp TTCTTSC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHS
T ss_pred hhhhcCC-CHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHh
Confidence 23 57888999999998888775 66899999999998763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=5.7e-14 Score=146.00 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=133.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEecccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEV 365 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l------~~~~i~i~~~~l 365 (957)
+.+++++.|.++.++.|+.++.. ....+++|+|||||||||+++++|+++ ....+.++++..
T Consensus 8 P~~~~diig~~~~~~~l~~~i~~------------~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~ 75 (237)
T d1sxjd2 8 PKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 75 (237)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecccc
Confidence 45788999999999888887421 123459999999999999999999886 456777777554
Q ss_pred cccccchhHHHHHHHH------------HHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeE
Q 002169 366 VSQNYGESEQALHEVF------------DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 433 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf------------~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~ 433 (957)
.+... ....++... +........|++|||+|.+... ....++..++.. .....
T Consensus 76 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~-----------~~~~l~~~~~~~--~~~~~ 140 (237)
T d1sxjd2 76 RGISI--VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMETY--SGVTR 140 (237)
T ss_dssp CCHHH--HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT--TTTEE
T ss_pred ccchH--HHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHH-----------HHHHHhhccccc--ccccc
Confidence 33211 111111111 1112223459999999988532 223455555542 45677
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
+|.+++..+.+.+++++ |+ ..+.|..|+.++..++++..+.+.+..+++..++.+++.+.|- .+..-.+++.++
T Consensus 141 ~i~~~~~~~~~~~~l~s--r~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd-~R~ai~~L~~~~ 214 (237)
T d1sxjd2 141 FCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSAS 214 (237)
T ss_dssp EEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTH
T ss_pred ccccccccccccccccc--hh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 88888998899999998 77 5689999999999999999999988899999999999998773 333333444443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=9.1e-15 Score=146.95 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=118.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEecc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGP 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~ 363 (957)
.++.+.|.+++++++.++ +..+...+++|+||||+|||++++.+|..+ +.+++.++..
T Consensus 20 ~ld~~igRd~Ei~~l~~i------------L~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~ 87 (195)
T d1jbka_ 20 KLDPVIGRDEEIRRTIQV------------LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp CSCCCCSCHHHHHHHHHH------------HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred CCCCCcCcHHHHHHHHHH------------HhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHH
Confidence 456788999999988877 344456789999999999999999999754 5789999999
Q ss_pred ccccc--ccchhHHHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 364 EVVSQ--NYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 364 ~l~~~--~~ge~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.++.. |.|+.+.+++.+++.+.... ..||||||++.+.......++. .+.+.|...| .++.+.+|++|.+
T Consensus 88 ~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~---d~~~~Lkp~L----~rg~l~~IgatT~ 160 (195)
T d1jbka_ 88 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARGELHCVGATTL 160 (195)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH----HTTSCCEEEEECH
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcc---cHHHHHHHHH----hCCCceEEecCCH
Confidence 98864 67899999999999876554 6799999999998654332211 1122233333 4678899999975
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEIL 472 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il 472 (957)
.+ +-|++|.| ||.. |.+..|+.++-..|+
T Consensus 161 eey~~~~e~d~aL~r--rF~~-I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 161 DEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHT--TEEE-EECCCCCHHHHHTTC
T ss_pred HHHHHHHHcCHHHHh--cCCE-eecCCCCHHHHHHHh
Confidence 33 45799999 9965 999999999887765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=4.1e-14 Score=146.47 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=131.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----cEEEEecccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----NLFTVNGPEV 365 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-----~~i~i~~~~l 365 (957)
.+..++++.|.++.++.|++++... ...++||+|||||||||+|+++|++++. .++++++++.
T Consensus 10 rP~~~~d~ig~~~~~~~L~~~~~~~------------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~ 77 (224)
T d1sxjb2 10 RPQVLSDIVGNKETIDRLQQIAKDG------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 77 (224)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSC------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC------------CCCeEEEECCCCCCchhhHHHHHHHHhcccccccccccccccc
Confidence 3457889999999999999886321 1236999999999999999999998764 4788887765
Q ss_pred cccccchhHHHHHHHHHHHh-------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 366 VSQNYGESEQALHEVFDSAS-------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~a~-------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
.+. ..+...+.... .....+++|||+|.+... ....|+..++. ......+|+++
T Consensus 78 ~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~-----------~~~~ll~~~e~--~~~~~~~i~~~ 138 (224)
T d1sxjb2 78 RGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMEL--YSNSTRFAFAC 138 (224)
T ss_dssp CSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHH--TTTTEEEEEEE
T ss_pred CCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccchh-----------HHHHHhhhccc--cccceeeeecc
Confidence 432 12222222211 123569999999988532 23446666665 34567889999
Q ss_pred CCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 439 NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 439 N~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
+..+.+.+++++ |+ ..|.|+.|+.++...++...+.+.+..+++..++.++..+.|-
T Consensus 139 ~~~~~i~~~l~s--r~-~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd 195 (224)
T d1sxjb2 139 NQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 195 (224)
T ss_dssp SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred CchhhhhhHHHH--HH-HHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCc
Confidence 999999999999 77 4599999999999999999998888888999999999988763
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=7.5e-15 Score=147.57 Aligned_cols=157 Identities=24% Similarity=0.408 Sum_probs=118.7
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~ 713 (957)
.++.++|.++..+++.+.+. .+...+++|+||||+|||++++.+|... +..++.++.
T Consensus 20 ~ld~~igRd~Ei~~l~~iL~-------------r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~ 86 (195)
T d1jbka_ 20 KLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCCCCcCcHHHHHHHHHHHh-------------ccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence 45778999998888877764 3456689999999999999999999753 578999999
Q ss_pred CCccc--ccccchHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe
Q 002169 714 PELFS--KWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 790 (957)
Q Consensus 714 ~~l~~--~~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a 790 (957)
+.+++ +|.|+.+..++.+++.+.... ..||||||+|.+....... ++.++.+ -|...|. ++.+.+|++
T Consensus 87 ~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~-g~~d~~~----~Lkp~L~----rg~l~~Iga 157 (195)
T d1jbka_ 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDAGN----MLKPALA----RGELHCVGA 157 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHH----HHHHHHH----TTSCCEEEE
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCC-CcccHHH----HHHHHHh----CCCceEEec
Confidence 88874 578999999999999876554 6799999999997654332 2223322 2333343 567889998
Q ss_pred cCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHH
Q 002169 791 TNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIF 825 (957)
Q Consensus 791 TN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il 825 (957)
|...+ .-|++|.| ||. .|.+..|+.++..+|+
T Consensus 158 tT~eey~~~~e~d~aL~r--rF~-~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHHcCHHHHh--cCC-EeecCCCCHHHHHHHh
Confidence 87443 35999999 994 8899999999887765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=1.3e-13 Score=144.50 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=117.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEeccc----
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPE---- 364 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~---~~i~i~~~~---- 364 (957)
+.+++++.|.+++++.|+.++... ....++|||||||||||++|+++|+++.. ....++...
T Consensus 7 P~~~~diig~~~~~~~L~~~~~~~-----------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~ 75 (252)
T d1sxje2 7 PKSLNALSHNEELTNFLKSLSDQP-----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 75 (252)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----------CCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccccc
Confidence 356889999999888887764221 12346999999999999999999988621 111111000
Q ss_pred -----------------ccccccc-hhHHHHHHHHHHHh--------------ccCCeEEEEcCccccccCCcCCCchHH
Q 002169 365 -----------------VVSQNYG-ESEQALHEVFDSAS--------------QSAPAVVFIDELDAIAPARKDGGEELS 412 (957)
Q Consensus 365 -----------------l~~~~~g-e~e~~i~~vf~~a~--------------~~~p~IL~IDEiD~l~~~~~~~~~~~~ 412 (957)
+.....+ .....+........ .....+++|||+|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~---------- 145 (252)
T d1sxje2 76 SNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---------- 145 (252)
T ss_dssp -------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----------
T ss_pred ccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEecccccccc----------
Confidence 0000001 11111222222111 12245999999998732
Q ss_pred HHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCC-ChHHHHHH
Q 002169 413 QRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL-LDSEVEYL 491 (957)
Q Consensus 413 ~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l-~~~~l~~L 491 (957)
.....|+..++.. ..++.+|++||.++.+++++++ |+ ..|+|+.|+.++..++++..+...+..+ +++.++.+
T Consensus 146 -~~~~~l~~~~e~~--~~~~~~Il~tn~~~~i~~~l~s--R~-~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i 219 (252)
T d1sxje2 146 -DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRI 219 (252)
T ss_dssp -HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHH
T ss_pred -ccchhhhcccccc--cccccceeeeccccchhhhhhc--ch-heeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 2344566777653 4568899999999999999998 88 4699999999999999998877654443 46677889
Q ss_pred HHHcCC
Q 002169 492 SMATHG 497 (957)
Q Consensus 492 a~~t~g 497 (957)
+..+.|
T Consensus 220 ~~~s~G 225 (252)
T d1sxje2 220 AQASNG 225 (252)
T ss_dssp HHHHTT
T ss_pred HHHcCC
Confidence 988777
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.48 E-value=2.2e-14 Score=158.99 Aligned_cols=172 Identities=20% Similarity=0.161 Sum_probs=117.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc-cchhHHHHHHHHHHHh------ccCCeEEEEcC
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN-YGESEQALHEVFDSAS------QSAPAVVFIDE 396 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~-~ge~e~~i~~vf~~a~------~~~p~IL~IDE 396 (957)
.|++.++++|||||||||||++|+++|+.++.+++.+++++..+.+ .+........+|+.+. ...|+++++||
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~De 228 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 228 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred hCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEeh
Confidence 3677888999999999999999999999999999999998876553 2322222222333221 12245555555
Q ss_pred ccccccCCcCCCchHHHHHHHHHHHHhhccc------cC------CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCC
Q 002169 397 LDAIAPARKDGGEELSQRMVATLLNLMDGVC------RT------DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPS 464 (957)
Q Consensus 397 iD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~------~~------~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~ 464 (957)
+|.+. ..+++.. .. ....+|+|||.. +.++.|++||++.+.+..|+
T Consensus 229 iD~l~-------------------~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~---~~~~~r~~Rf~~~i~~~~~~ 286 (362)
T d1svma_ 229 LDNLR-------------------DYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEY---SVPKTLQARFVKQIDFRPKD 286 (362)
T ss_dssp HHTTH-------------------HHHHCSSCEEECCSSSCCEEECCCCEEEEECSC---CCCHHHHTTEEEEEECCCCH
T ss_pred Hhhcc-------------------cccCCcchhhhhhhhhchhhhccCCceeecccc---cccccccccCceEEeecCCC
Confidence 55443 3333310 00 112378899853 45566789999999998888
Q ss_pred HHHHH-HHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 465 PAQRL-EILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 465 ~~~r~-~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
...+. +++..++++.... ...+.++..+.+++++|+.++++++...+.++...
T Consensus 287 ~~~~~~~~l~~i~~~~~l~---~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~~ 340 (362)
T d1svma_ 287 YLKHCLERSEFLLEKRIIQ---SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDK 340 (362)
T ss_dssp HHHHHHHTCTHHHHTTCTT---CHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCC---CCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 76663 5666666665554 34566788888999999999999998888776644
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.3e-13 Score=150.34 Aligned_cols=197 Identities=19% Similarity=0.272 Sum_probs=135.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC--CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc----
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG--TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK---- 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~--~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~---- 719 (957)
..|+||+++++.+.+++.... ..+. -+|...+||+||||||||.+|++||..++.+|+.++++++...
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~------~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~ 95 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMAR------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 95 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred CeecChHHHHHHHHHHHHHHH------ccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhh
Confidence 568999999999999875321 1111 1223358999999999999999999999999999999876432
Q ss_pred --------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc---------ccC
Q 002169 720 --------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL---------HQR 782 (957)
Q Consensus 720 --------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~---------~~~ 782 (957)
|+|..+.. .+.........+|++|||+|.. ...+++.|++.++.. ...
T Consensus 96 ~l~g~~~gy~g~~~~~--~l~~~~~~~~~~vvl~DeieKa-------------~~~V~~~lLqild~G~ltd~~Gr~vdf 160 (315)
T d1r6bx3 96 RLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGRKADF 160 (315)
T ss_dssp SSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhcccCCCccccccCC--hhhHHHHhCccchhhhcccccc-------------cchHhhhhHHhhccceecCCCCCccCc
Confidence 33332222 2444455677789999999954 567888999988742 124
Q ss_pred CcEEEEEecCCCC-------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-----
Q 002169 783 VNVTVIAATNRPD-------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----- 832 (957)
Q Consensus 783 ~~v~VI~aTN~~~-------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~----- 832 (957)
.+.++|++||-.. .+.|.++. |||.++.|.+.+.++..+|+...+.++
T Consensus 161 ~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~ 238 (315)
T d1r6bx3 161 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 238 (315)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHh--hhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4788999998421 24677877 999999999999999888887666432
Q ss_pred --CCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHH
Q 002169 833 --PCS---SDVNIRELACL--SEGCTGADISLICREAAIS 865 (957)
Q Consensus 833 --~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~ 865 (957)
+.. .+...+.++.. ...|.+|.|+.++++-...
T Consensus 239 ~~~i~l~~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~ 278 (315)
T d1r6bx3 239 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 278 (315)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred hcCcchhhHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHH
Confidence 211 12223444432 3345567777776654433
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=7.1e-14 Score=155.81 Aligned_cols=201 Identities=25% Similarity=0.331 Sum_probs=133.5
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEe
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVK 712 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~ 712 (957)
-.++.++|.++..+++.+.+. .+...+++|+||||+|||++++.+|... +..++.++
T Consensus 19 g~ld~~~gr~~ei~~~~~~L~-------------r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld 85 (387)
T d1qvra2 19 GKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 85 (387)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCCCCcCcHHHHHHHHHHHh-------------cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEee
Confidence 456788999999888888764 3456779999999999999999999753 46799999
Q ss_pred CCCccc--ccccchHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 713 GPELFS--KWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 713 ~~~l~~--~~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
...++. +|.|+++..++.++..+.... +.||||||+|.+.+..+.. ++.+ +.+-|.-.|. ++.+.+|+
T Consensus 86 ~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~-g~~d----~a~~Lkp~L~----rg~~~~I~ 156 (387)
T d1qvra2 86 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GAVD----AGNMLKPALA----RGELRLIG 156 (387)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTCCCEEE
T ss_pred HhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCC-Cccc----HHHHHHHHHh----CCCcceee
Confidence 999986 588999999999999988764 6889999999998654322 1112 2233333343 56888999
Q ss_pred ecCCCC----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----CcccHHHHHH-----HccCCcHHHH
Q 002169 790 ATNRPD----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELAC-----LSEGCTGADI 855 (957)
Q Consensus 790 aTN~~~----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----~~~~l~~la~-----~t~g~sg~dl 855 (957)
+|+..+ .-|+||.| ||. .|.+..|+.++...|++.....+... .+..+...+. ++..+-+...
T Consensus 157 ~tT~~ey~~~e~d~al~r--rF~-~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKA 233 (387)
T d1qvra2 157 ATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 233 (387)
T ss_dssp EECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred ecCHHHHHHhcccHHHHH--hcc-cccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhH
Confidence 986322 24899999 995 89999999999999999777654322 2223444443 3445568888
Q ss_pred HHHHHHHHHHHHH
Q 002169 856 SLICREAAISAIE 868 (957)
Q Consensus 856 ~~l~~eA~~~a~~ 868 (957)
..++.+|+..+..
T Consensus 234 idlld~a~a~~~i 246 (387)
T d1qvra2 234 IDLIDEAAARLRM 246 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999998876644
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=1.8e-13 Score=149.09 Aligned_cols=200 Identities=23% Similarity=0.320 Sum_probs=136.6
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCC-cceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc--
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPT-GILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS-- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~-giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~-- 718 (957)
..|+||+++++.+.+.+.... ..+. -..|. .+||+||+|||||.+|++||..+ +.+++.++++++..
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~------~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~ 96 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 96 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred CeEeCHHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccch
Confidence 457899999999988875321 1111 12233 47899999999999999999987 67999999988754
Q ss_pred ----------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 719 ----------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 719 ----------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
.|+|..+. ..+.+..+.+..+|++|||||.. ...+++.|+..++.-.
T Consensus 97 ~~~~L~g~~~gyvG~~~~--~~l~~~~~~~p~~Vvl~DEieK~-------------~~~v~~~ll~~l~~g~~~~~~gr~ 161 (315)
T d1qvra3 97 AVSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDEIEKA-------------HPDVFNILLQILDDGRLTDSHGRT 161 (315)
T ss_dssp GGGGC----------------CHHHHHHHCSSEEEEESSGGGS-------------CHHHHHHHHHHHTTTEECCSSSCC
T ss_pred hhhhhcCCCCCCcCcccC--ChHHHHHHhCCCcEEEEehHhhc-------------CHHHHHHHHHHhccCceeCCCCcE
Confidence 24443221 23445555666699999999954 5678888888887531
Q ss_pred -cCCcEEEEEecCC--------------------------CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc--
Q 002169 781 -QRVNVTVIAATNR--------------------------PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-- 831 (957)
Q Consensus 781 -~~~~v~VI~aTN~--------------------------~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-- 831 (957)
...+.++|++||- .+.+.|.++. |||.++.|.+.+.++..+|+...+.+
T Consensus 162 v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l~~l~ 239 (315)
T d1qvra3 162 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 239 (315)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred ecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHHHHHH
Confidence 2347899999994 2447888888 99999999999999988888755532
Q ss_pred -----CCCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHH
Q 002169 832 -----IPCS---SDVNIRELACL--SEGCTGADISLICREAAISAIE 868 (957)
Q Consensus 832 -----~~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~ 868 (957)
..+. .+...+.|++. ...|-+|.++.++++.....+.
T Consensus 240 ~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La 286 (315)
T d1qvra3 240 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 286 (315)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHH
T ss_pred HHHHhccccccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHH
Confidence 2222 12234556654 3455578888888776555443
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.43 E-value=5e-12 Score=132.83 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=131.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEeccccccc---
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGPEVVSQ--- 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~~l~~~--- 368 (957)
+.++|.+.+++.|.+++...+.. .+ .++.+++|+||||||||++|+++++.+. ..++.+++......
T Consensus 16 ~~l~~Re~ei~~l~~~l~~~l~~-----~~-~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (276)
T d1fnna2 16 KRLPHREQQLQQLDILLGNWLRN-----PG-HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAI 89 (276)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS-----TT-SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhC-----CC-CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhh
Confidence 46899999999999987654332 12 4577999999999999999999999873 45677776433221
Q ss_pred -------------ccchh-HHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeE
Q 002169 369 -------------NYGES-EQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 433 (957)
Q Consensus 369 -------------~~ge~-e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~ 433 (957)
..+.. ......+.+.... ..+.++++|++|.+... .......++..+.. .....+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~~~~~~~~~-~~~~~~~ 160 (276)
T d1fnna2 90 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD--------ILSTFIRLGQEADK-LGAFRIA 160 (276)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHH--------HHHHHHHHTTCHHH-HSSCCEE
T ss_pred hhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhh--------hhhhHHHHHhcccc-ccccceE
Confidence 11111 2223333333332 34678889998877421 11122222222222 2345678
Q ss_pred EEEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcCCC--------c
Q 002169 434 VIAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATHGF--------V 499 (957)
Q Consensus 434 vI~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~g~--------~ 499 (957)
+|++++..+ .+++.+.+ |+. ..|.|+.|+.+++.+|++.++.. ....+++..++.++..+..+ +
T Consensus 161 ~i~~~~~~~~~~~~~~~~~~--r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~ 238 (276)
T d1fnna2 161 LVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 238 (276)
T ss_dssp EEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EeecCCchhhhhhcchhhhh--hhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCC
Confidence 888888743 56677766 443 45899999999999999887664 34446888888888875321 3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002169 500 GADLAALCNEAALVCLR 516 (957)
Q Consensus 500 gaDi~~l~~~A~~~a~r 516 (957)
.+.+..+|+.|+..|..
T Consensus 239 ~R~a~~ll~~a~~~A~~ 255 (276)
T d1fnna2 239 ARLAIDILYRSAYAAQQ 255 (276)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667788887766654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.42 E-value=8.2e-13 Score=146.36 Aligned_cols=220 Identities=22% Similarity=0.273 Sum_probs=134.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHH---HH--------------hcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEA---FK--------------RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF 708 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~---~~--------------~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~ 708 (957)
..|+||+++|+.+..++..-+++... .. .-.-.++.++||.||+|||||.+||+||..++.+|
T Consensus 17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ 96 (364)
T d1um8a_ 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 96 (364)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence 46899999999998777321111110 00 01245788899999999999999999999999999
Q ss_pred EEEeCCCccc-ccccch-HHHHHHHHHH----HHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccc-
Q 002169 709 LAVKGPELFS-KWVGES-EKAVRSLFAK----ARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLH- 780 (957)
Q Consensus 709 i~v~~~~l~~-~~vg~~-~~~ir~~f~~----A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~- 780 (957)
+.++++++.. .|+|.- +..++.++.. ++....+|++|||++...+....... ...+...+++.||+.|++..
T Consensus 97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~ 176 (364)
T d1um8a_ 97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 176 (364)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred eehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCcee
Confidence 9999988765 366642 3345555544 23445679999999987654322211 12356779999999999521
Q ss_pred ----------cCCcEEEEEecCC-------------------------------------------------CCCCChhh
Q 002169 781 ----------QRVNVTVIAATNR-------------------------------------------------PDKIDPAL 801 (957)
Q Consensus 781 ----------~~~~v~VI~aTN~-------------------------------------------------~~~id~aL 801 (957)
...+.++|.++|- ...+.|.+
T Consensus 177 ~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 256 (364)
T d1um8a_ 177 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 256 (364)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHH
Confidence 1124455555553 01245666
Q ss_pred hCCCCcceecccCCCCHHHHHHHHHH-----------HHhcCCCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHH
Q 002169 802 LRPGRFDRLLYVGPPNETDREEIFRI-----------HLRKIPCS---SDVNIRELACL--SEGCTGADISLICREAAIS 865 (957)
Q Consensus 802 lr~gRfd~~i~~~~P~~~er~~Il~~-----------~l~~~~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~ 865 (957)
+- ||+.++.|.+.+.++..+|+.. .+...++. .+..++.||.. ..+|-+|-|+.++++....
T Consensus 257 ~g--Ri~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~riie~~l~~ 334 (364)
T d1um8a_ 257 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 334 (364)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred HH--HhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Confidence 65 9999999999999999998863 12223333 22234555543 2356677888877765554
Q ss_pred HH
Q 002169 866 AI 867 (957)
Q Consensus 866 a~ 867 (957)
.+
T Consensus 335 ~~ 336 (364)
T d1um8a_ 335 IM 336 (364)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.42 E-value=1.7e-12 Score=133.34 Aligned_cols=192 Identities=15% Similarity=0.298 Sum_probs=131.2
Q ss_pred cccccc-cCC--cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccc
Q 002169 292 EQDISK-LGG--LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEV 365 (957)
Q Consensus 292 ~~~~~~-i~G--l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l 365 (957)
.++|++ ++| .....+.++++++.+ + ....+++||||+|||||+|++++|+++ +..+++++..++
T Consensus 6 ~~tFdnF~vg~~N~~a~~~~~~~~~~~---------~-~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~ 75 (213)
T d1l8qa2 6 KYTLENFIVGEGNRLAYEVVKEALENL---------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 75 (213)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT---------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCChhhccCCCcHHHHHHHHHHHHhCc---------C-CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence 345556 334 445566666665433 1 123459999999999999999999876 567788887776
Q ss_pred cccccchhHH-HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 366 VSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 366 ~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.......... ....+++... ..++|+||++|.+..+. .....|..+++.....++.++|.+...|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~~---------~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 76 AQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCch---------HHHHHHHHHHHHHhhccceEEEecCCcchhc
Confidence 5543222111 1222333332 24699999999996432 3345567777776666777777777777655
Q ss_pred h---hhhhCCCCcce--eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 445 E---PALRRPGRLDR--EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 445 d---~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+ +.+++ |+.. .+.++ |+.+.|.++++.++...++.+++..++.+++++. +.+++..+++.
T Consensus 145 ~~~~~dL~S--RL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~ 209 (213)
T d1l8qa2 145 DGVSDRLVS--RFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKL 209 (213)
T ss_dssp TTSCHHHHH--HHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHH
T ss_pred cccchHHHH--HhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 4 67777 6543 45675 6778999999999999999999999999999874 47888776654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.41 E-value=1.5e-12 Score=137.89 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=140.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVV 366 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~ 366 (957)
+.+.|.+.+++.|.+++..+..+.. ..-.....++|+||||||||++++++++.+. ..+..+++....
T Consensus 16 ~~~~~Re~e~~~l~~~l~~~~~~~~---~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (287)
T d1w5sa2 16 PELRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 92 (287)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS---CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC---CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecccccc
Confidence 4688999999999888755533211 0011122456789999999999999998762 345566655432
Q ss_pred cc----------------ccchhHHHHHHH-HHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc
Q 002169 367 SQ----------------NYGESEQALHEV-FDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 428 (957)
Q Consensus 367 ~~----------------~~ge~e~~i~~v-f~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~ 428 (957)
.. +.+.....+... ++... ...+.++++||+|.+....+.. ......+..+.+.+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~--~~~~~~l~~l~~~l~~~~~ 170 (287)
T d1w5sa2 93 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA--AEDLYTLLRVHEEIPSRDG 170 (287)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC--HHHHHHHHTHHHHSCCTTS
T ss_pred chhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc--hhHHHHHHHHHHhcchhhc
Confidence 22 112222333233 33222 2345688999999997654332 2222333344555555555
Q ss_pred CCCeEEEEecCCCCCch------hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcCCC--
Q 002169 429 TDGVLVIAATNRPDSIE------PALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATHGF-- 498 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ld------~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~g~-- 498 (957)
.....+|+++|.++..+ +.+.+ ||...+.++.|+.++..+|++..++. ....+++..++.+|+.+..+
T Consensus 171 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~ 248 (287)
T d1w5sa2 171 VNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 248 (287)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred ccceeEEeecccHHHHHHHHhhccchhc--ccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhcccc
Confidence 56778888877665333 56666 88889999999999999999987754 34457888999999877432
Q ss_pred ---cHHHHHHHHHHHHHHHHHHhcc
Q 002169 499 ---VGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 499 ---~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
..+....+|++|+..|..+...
T Consensus 249 ~~gd~R~ai~~l~~a~~~A~~~~~~ 273 (287)
T d1w5sa2 249 GDGSARRAIVALKMACEMAEAMGRD 273 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4566777888888877665433
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=2e-12 Score=132.19 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=110.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhC------------------------CcEEEEeCCCcccccccchHHHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAG------------------------LNFLAVKGPELFSKWVGESEKAVRSLF 732 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~------------------------~~~i~v~~~~l~~~~vg~~~~~ir~~f 732 (957)
-+.+.++||+||||+|||++|+++|+.+. ..++.+...+-.. .-....+|.+.
T Consensus 21 ~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~i~~~~ir~l~ 97 (207)
T d1a5ta2 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN---TLGVDAVREVT 97 (207)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS---SBCHHHHHHHH
T ss_pred CCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhccc---ccccchhhHHh
Confidence 34567799999999999999999998752 1233332221100 11244566666
Q ss_pred HHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcc
Q 002169 733 AKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 808 (957)
Q Consensus 733 ~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd 808 (957)
+.+. .+...|++|||+|.+ .....+.|+..|+.. ..++.+|++||+++.+.+++++ |+
T Consensus 98 ~~~~~~~~~~~~kviIide~d~l-------------~~~a~n~Llk~lEep--~~~~~fIl~t~~~~~ll~tI~S--Rc- 159 (207)
T d1a5ta2 98 EKLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RC- 159 (207)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-
T ss_pred hhhhhccccCccceEEechhhhh-------------hhhhhHHHHHHHHhh--cccceeeeeecChhhhhhhhcc--ee-
Confidence 6543 234679999999976 355678899999954 5689999999999999999999 88
Q ss_pred eecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHH
Q 002169 809 RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISL 857 (957)
Q Consensus 809 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~ 857 (957)
..+.|++|+.++...+++.. ..+ ++..+..+++.+.| +.|++-+
T Consensus 160 ~~i~~~~~~~~~~~~~L~~~---~~~-~~~~~~~i~~~s~G-s~r~al~ 203 (207)
T d1a5ta2 160 RLHYLAPPPEQYAVTWLSRE---VTM-SQDALLAALRLSAG-SPGAALA 203 (207)
T ss_dssp EEEECCCCCHHHHHHHHHHH---CCC-CHHHHHHHHHHTTT-CHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHc---CCC-CHHHHHHHHHHcCC-CHHHHHH
Confidence 69999999998888777542 222 34457778888887 4554443
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.37 E-value=3.7e-12 Score=139.66 Aligned_cols=214 Identities=24% Similarity=0.294 Sum_probs=133.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc----
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL---- 716 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l---- 716 (957)
|...|.+|+||+.+|..+.-+...+ ...|+||+||||||||++||++|..+.. +..+....+
T Consensus 2 ~~~~f~~I~Gq~~~kral~laa~~~-------------~~h~vLl~G~pG~GKT~lar~~~~iLp~-~~~~~~~~~~~~~ 67 (333)
T d1g8pa_ 2 PVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPE-IEAVEGCPVSSPN 67 (333)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCC-EEEETTCTTCCSS
T ss_pred CCCChhhccCcHHHHHHHHHHHhcc-------------CCCeEEEECCCCccHHHHHHHHHHhCCC-chhhccCccccCc
Confidence 4557999999999998776544321 1247999999999999999999986621 111111000
Q ss_pred ----------------------ccccccchHHHH------------------HHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 717 ----------------------FSKWVGESEKAV------------------RSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 717 ----------------------~~~~vg~~~~~i------------------r~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
.....+.+...+ ...+..|..+ |+|+||++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~g---vl~iDEi~~~----- 139 (333)
T d1g8pa_ 68 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRG---YLYIDECNLL----- 139 (333)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTE---EEEETTGGGS-----
T ss_pred cccccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccccccccc---EeecccHHHH-----
Confidence 000001111111 1234455444 9999999854
Q ss_pred CCCCCCcchHHHHHHHHHHHhcccc-----------CCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCC-HHHHHH
Q 002169 757 KESDGVSVSDRVMSQLLVELDGLHQ-----------RVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPN-ETDREE 823 (957)
Q Consensus 757 ~~~~~~~~~~~v~~~LL~~ld~~~~-----------~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~-~~er~~ 823 (957)
..++++.|++.|+...- ..+.++|+|+|..+ .+.+++++ ||+..+.++.|. ...+.+
T Consensus 140 --------~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llD--Rf~~~i~v~~~~~~~~~~~ 209 (333)
T d1g8pa_ 140 --------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 209 (333)
T ss_dssp --------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred --------HHHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhh--hhcceeeccCcchhhHHHH
Confidence 56788999999984321 23578888888654 58999999 999888887764 444544
Q ss_pred HHHHHH-------------------------------hcCCCCCcccHH---HHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 824 IFRIHL-------------------------------RKIPCSSDVNIR---ELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 824 Il~~~l-------------------------------~~~~~~~~~~l~---~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+..... .+.... +.... .........+.|-...+++-|...|..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~-~~~~~~~~~~~~~~~~~S~R~~~~llrvArtiA~L~ 288 (333)
T d1g8pa_ 210 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALE 288 (333)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecC-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHc
Confidence 443211 111111 11111 2222333447788888888887777766
Q ss_pred hcCCCCCCHHHHHHHHHhhC
Q 002169 870 NLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 870 ~~~~~~It~~d~~~al~~~~ 889 (957)
. ...|+.+|+.+|+.-+.
T Consensus 289 g--r~~V~~~di~~a~~lvL 306 (333)
T d1g8pa_ 289 G--ATAVGRDHLKRVATMAL 306 (333)
T ss_dssp T--CSBCCHHHHHHHHHHHH
T ss_pred C--CCCCCHHHHHHHHHHHH
Confidence 5 77899999999776543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.2e-11 Score=134.60 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=142.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc-----cc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN-----YG 371 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~-----~g 371 (957)
.+.|++++++.|.+.|...... +.+ .-.|...+||+||||||||.||+++|..++.+++.++++++.... .|
T Consensus 23 ~viGQ~~a~~~v~~~v~~~~~~--l~~-~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g 99 (315)
T d1r6bx3 23 LVFGQDKAIEALTEAIKMARAG--LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 99 (315)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT--CSC-TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred eecChHHHHHHHHHHHHHHHcc--CCC-CCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcc
Confidence 5899999999999887544211 000 112334688999999999999999999999999999998765421 11
Q ss_pred ----hhHHHH-HHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEEEe
Q 002169 372 ----ESEQAL-HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVIAA 437 (957)
Q Consensus 372 ----e~e~~i-~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI~t 437 (957)
...... ..+.+.......+|+++||+|...+ .+...|++.++.- ....+.++|+|
T Consensus 100 ~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-----------~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~T 168 (315)
T d1r6bx3 100 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 168 (315)
T ss_dssp CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred cCCCccccccCChhhHHHHhCccchhhhcccccccc-----------hHhhhhHHhhccceecCCCCCccCccceEEEec
Confidence 111111 1233334445568999999998742 4667788888642 23467899999
Q ss_pred cCCCC-------------------------CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC---------CCCCC
Q 002169 438 TNRPD-------------------------SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG---------MEHSL 483 (957)
Q Consensus 438 tN~~~-------------------------~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~---------~~~~l 483 (957)
+|--. .+.|.+.. |+|..+.|.+.+.++..+|+...+.. ..+.+
T Consensus 169 snig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~ 246 (315)
T d1r6bx3 169 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV 246 (315)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred cchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHh--hhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 98421 24566766 99999999999999998888765543 23456
Q ss_pred ChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 002169 484 LDSEVEYLSMA--THGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 484 ~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
++..++.++.. ...+-++.|+.+++.-....+.+
T Consensus 247 ~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~ 282 (315)
T d1r6bx3 247 SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 282 (315)
T ss_dssp CHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHH
Confidence 78888888875 45566678888777655555443
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=1e-11 Score=134.95 Aligned_cols=204 Identities=20% Similarity=0.290 Sum_probs=140.8
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-----
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ----- 368 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~----- 368 (957)
.+.|+++.++.|.+.+...... +.+ .-.|...+||+||+|+|||.+|+.+|..+ +.+++.++++++...
T Consensus 24 ~v~GQ~~ai~~v~~~i~~~~~~--l~~-~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T d1qvra3 24 RVVGQDEAIRAVADAIRRARAG--LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 100 (315)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGG--CSC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGG
T ss_pred eEeCHHHHHHHHHHHHHHHhcC--CCC-CCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhh
Confidence 5889999999998887544221 000 11233357888999999999999999987 678999998876542
Q ss_pred -------ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCe
Q 002169 369 -------NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGV 432 (957)
Q Consensus 369 -------~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v 432 (957)
|+|..+. ..+.+.......+|+++||+|.+.+ .+...|+.+++.- ....+.
T Consensus 101 L~g~~~gyvG~~~~--~~l~~~~~~~p~~Vvl~DEieK~~~-----------~v~~~ll~~l~~g~~~~~~gr~v~~~~~ 167 (315)
T d1qvra3 101 LIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHGRTVDFRNT 167 (315)
T ss_dssp C----------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred hcCCCCCCcCcccC--ChHHHHHHhCCCcEEEEehHhhcCH-----------HHHHHHHHHhccCceeCCCCcEecCcce
Confidence 2232111 2233444445568999999998743 4666777777652 223568
Q ss_pred EEEEecCC--------------------------CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--------
Q 002169 433 LVIAATNR--------------------------PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG-------- 478 (957)
Q Consensus 433 ~vI~ttN~--------------------------~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~-------- 478 (957)
++|+|||- .+.+.|.+.. |||..+.|.+.+.++..+|+...+..
T Consensus 168 i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~ 245 (315)
T d1qvra3 168 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 245 (315)
T ss_dssp EEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhc
Confidence 99999995 2345677777 99999999999999999988654432
Q ss_pred -CCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 479 -MEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 479 -~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
..+.+++..++.|++. ...|-++.|+..++......+...
T Consensus 246 ~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~~ 288 (315)
T d1qvra3 246 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 288 (315)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred cccccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3455688889999886 456667888888887666665443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.9e-11 Score=124.85 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=116.4
Q ss_pred CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------
Q 002169 300 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------ 355 (957)
Q Consensus 300 Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~------------------------ 355 (957)
.+++..+.|...+... +.+..+||+||||+|||++|+++|+.+-.
T Consensus 6 w~~~~~~~l~~~~~~~-----------~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (207)
T ss_dssp GGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred ccHHHHHHHHHHHHcC-----------CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhcccc
Confidence 4566666666664322 34667999999999999999999987621
Q ss_pred cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 356 NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 356 ~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
.++.+...+- .. .-....++.+.+.+. .....|++|||+|.+.. ...+.|+..|+.. ..+
T Consensus 75 ~~~~~~~~~~-~~--~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~-----------~a~n~Llk~lEep--~~~ 138 (207)
T d1a5ta2 75 DYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAE 138 (207)
T ss_dssp TEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTT
T ss_pred ccchhhhhhc-cc--ccccchhhHHhhhhhhccccCccceEEechhhhhhh-----------hhhHHHHHHHHhh--ccc
Confidence 2222221110 00 111334666666543 23467999999999842 3557789999874 567
Q ss_pred eEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 432 VLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 432 v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
+.+|++|+.++.+.+++++ |+ ..+.|+.|+.++...+++.. ..+++..++.+++.++|-.+
T Consensus 139 ~~fIl~t~~~~~ll~tI~S--Rc-~~i~~~~~~~~~~~~~L~~~-----~~~~~~~~~~i~~~s~Gs~r 199 (207)
T d1a5ta2 139 TWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSRE-----VTMSQDALLAALRLSAGSPG 199 (207)
T ss_dssp EEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH-----CCCCHHHHHHHHHHTTTCHH
T ss_pred ceeeeeecChhhhhhhhcc--ee-EEEecCCCCHHHHHHHHHHc-----CCCCHHHHHHHHHHcCCCHH
Confidence 8999999999999999999 87 56999999999988888643 23467788888888776543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.26 E-value=3.5e-11 Score=123.42 Aligned_cols=194 Identities=19% Similarity=0.258 Sum_probs=124.7
Q ss_pred CCcccccc-CC--hHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCC
Q 002169 641 PKVKWEDV-GG--QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 714 (957)
Q Consensus 641 p~v~~~di-~G--~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~ 714 (957)
|+.+|++. +| .+.+...++++++++ + .....++||||+|||||.|++|+++++ +..++.++..
T Consensus 5 ~~~tFdnF~vg~~N~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~ 73 (213)
T d1l8qa2 5 PKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 73 (213)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCChhhccCCCcHHHHHHHHHHHHhCc----------C-CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence 66788885 45 445555666655543 1 123458999999999999999999886 4566777665
Q ss_pred CcccccccchH-HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESE-KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~-~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++...+..... .....+++.... ..+|+||++|.+... .....+|...++.....+..+||.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~dll~iDDi~~i~~~-----------~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 74 DFAQAMVEHLKKGTINEFRNMYKS--VDLLLLDDVQFLSGK-----------ERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHT--CSEEEEECGGGGTTC-----------HHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHccchhhHHHHHhh--ccchhhhhhhhhcCc-----------hHHHHHHHHHHHHHhhccceEEEecCCc
Confidence 55433222111 112233333332 359999999988532 3334445556665555656666666666
Q ss_pred CCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 794 PDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 794 ~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
|.. +.+.|.+ ||. .++.++ |+.++|.++++.++...++.-+ ..++.+++.+. +.||+..+++...
T Consensus 141 p~~l~~~~~dL~S--RL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~l~ 211 (213)
T d1l8qa2 141 PQKLDGVSDRLVS--RFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKLIK 211 (213)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHHHH
T ss_pred chhccccchHHHH--HhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHHhh
Confidence 654 4577877 764 355666 6678899999999988776633 34677777764 5899988887543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.22 E-value=6e-11 Score=131.14 Aligned_cols=214 Identities=18% Similarity=0.278 Sum_probs=136.7
Q ss_pred ccCCcHHHHHHHHHHHHhhhhh----h---------------hhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 297 KLGGLSKEYAILKDIIISSSVK----S---------------TLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~----~---------------~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
.|.|+++.++.+..++....++ . .+.+. -.++.++||.||+|||||.+||++|..++.+|
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~-~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ 96 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEV-ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 96 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHT-TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc-cCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence 4899999999988776322111 0 01111 24678899999999999999999999999999
Q ss_pred EEEeccccccc-ccch-hHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccc-
Q 002169 358 FTVNGPEVVSQ-NYGE-SEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVC- 427 (957)
Q Consensus 358 i~i~~~~l~~~-~~ge-~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~- 427 (957)
+.++++.+... |+|. .+..++.++..+ .....+|+++||+|.+.+...... +.....+...|++.+++-.
T Consensus 97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~ 176 (364)
T d1um8a_ 97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 176 (364)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred eehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCcee
Confidence 99999887763 4443 234566665543 233467999999999876543221 1123457788899888521
Q ss_pred ----------cCCCeEEEEecCCC-------------------------------------------------CCchhhh
Q 002169 428 ----------RTDGVLVIAATNRP-------------------------------------------------DSIEPAL 448 (957)
Q Consensus 428 ----------~~~~v~vI~ttN~~-------------------------------------------------~~ld~al 448 (957)
...+.++|.++|-. ..+.|.|
T Consensus 177 ~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf 256 (364)
T d1um8a_ 177 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 256 (364)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHH
Confidence 12234555555530 1134556
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHH-----------HHc--CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHH
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHA-----------LLS--GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALV 513 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~-----------~l~--~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~ 513 (957)
.. ||+..+.|...+.++..+|+.. .+. +..+.+++..++.||+. ...|-++.|..+++.....
T Consensus 257 ~g--Ri~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~riie~~l~~ 334 (364)
T d1um8a_ 257 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 334 (364)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred HH--HhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Confidence 55 9999999999999999999862 122 34556789999999986 3566677788777665433
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.20 E-value=1.7e-10 Score=130.57 Aligned_cols=242 Identities=21% Similarity=0.268 Sum_probs=147.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhc-CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l-~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
..|+||+++|+.+--++.--+++..+-... .--.+++|||+||+|||||.|||.||+.++.||+.+++..+.. .|+|+
T Consensus 14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~ 93 (443)
T d1g41a_ 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 93 (443)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeec
Confidence 368999999999988874221111110111 1123668999999999999999999999999999999987754 24443
Q ss_pred hHH-HHHHHHHHHH------------------------------------------------------------------
Q 002169 724 SEK-AVRSLFAKAR------------------------------------------------------------------ 736 (957)
Q Consensus 724 ~~~-~ir~~f~~A~------------------------------------------------------------------ 736 (957)
-.. .++.+++.|.
T Consensus 94 DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~~~~~~~ 173 (443)
T d1g41a_ 94 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 173 (443)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHHHHHHhcCCccccccc
Confidence 211 1111111110
Q ss_pred -------------------------------------------------------------------------hCCCeEE
Q 002169 737 -------------------------------------------------------------------------ANAPSII 743 (957)
Q Consensus 737 -------------------------------------------------------------------------~~~p~IL 743 (957)
.....++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i~~~ai~~v~~~~~~ 253 (443)
T d1g41a_ 174 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 253 (443)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred cccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHHHHHHHHHHhccCcc
Confidence 0012388
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEecC----CCCCCChhhhCCCCcceec
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAATN----RPDKIDPALLRPGRFDRLL 811 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aTN----~~~~id~aLlr~gRfd~~i 811 (957)
|+||++.........+ .......+...++..+++.. ......+|+++- .+..+-|.|. |||+.++
T Consensus 254 ~~dei~k~~~~~~~~g-~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEli--GRlPi~v 330 (443)
T d1g41a_ 254 FIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRV 330 (443)
T ss_dssp EEETGGGGSCCSSCSS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHH--TTCCEEE
T ss_pred ccchhhhhhhcccCCC-CCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhc--cceEEEE
Confidence 9999998876553321 12223445566676666532 233455655542 2233567787 5999999
Q ss_pred ccCCCCHHHHHHHHH--------HHH---hcCCCC---CcccHHHHHHHc-------cCCcHHHHHHHHHHHHHHHHHHh
Q 002169 812 YVGPPNETDREEIFR--------IHL---RKIPCS---SDVNIRELACLS-------EGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 812 ~~~~P~~~er~~Il~--------~~l---~~~~~~---~~~~l~~la~~t-------~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+...+.++..+||. ++. .-.++. .+..++++|+.+ ++--.|-|+.++.+....++-+.
T Consensus 331 ~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~ 410 (443)
T d1g41a_ 331 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 410 (443)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred EccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccC
Confidence 999999999988884 222 222222 233466666544 34446778888777776665543
Q ss_pred c----CCCCCCHHHHHHHHHhhCC
Q 002169 871 L----DASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 871 ~----~~~~It~~d~~~al~~~~p 890 (957)
- ....|+.+.+++.+..+..
T Consensus 411 p~~~~~~v~Id~~~v~~~l~~~~~ 434 (443)
T d1g41a_ 411 SDMNGQTVNIDAAYVADALGEVVE 434 (443)
T ss_dssp GGCTTCEEEECHHHHHHHHTTTTT
T ss_pred CCCCCCEEEECHHHHHhhhhchhh
Confidence 2 2335788888888766543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.06 E-value=2.2e-10 Score=119.95 Aligned_cols=201 Identities=20% Similarity=0.250 Sum_probs=120.0
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW---- 720 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~---- 720 (957)
.+|++...+.+.+.+... ......++|+||+|||||++|++|+... ..+++.+++..+....
T Consensus 2 ~v~~S~~~~~~~~~~~~~-----------a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~ 70 (247)
T d1ny5a2 2 YVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAE 70 (247)
T ss_dssp CCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHH
T ss_pred eEecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHH
Confidence 467777777777666431 2345569999999999999999998765 4578999987653221
Q ss_pred -ccc-------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 721 -VGE-------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 721 -vg~-------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
.|. .......+|+.|..+ +|||||||.+ ....+..|+..++... ...
T Consensus 71 lfg~~~~~~~~~~~~~~g~l~~a~gG---tL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~~~~~~~~~ 134 (247)
T d1ny5a2 71 LFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEIEV 134 (247)
T ss_dssp HHCBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred hcCcccCCcCCcccccCCHHHccCCC---EEEEeChHhC-------------CHHHHHHHHHHHHhCCEEECCCCCceec
Confidence 010 011113457777666 9999999976 3445556777665321 122
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHH----HHHHHHHH----hcCCCCC-cccHHHHHHHc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDR----EEIFRIHL----RKIPCSS-DVNIRELACLS 847 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er----~~Il~~~l----~~~~~~~-~~~l~~la~~t 847 (957)
++.+|++|+.+- ..+...|+|+. .+.+..|...+| ..+++.++ .+.+... ....+.+....
T Consensus 135 ~~RlI~~s~~~l---~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~ 211 (247)
T d1ny5a2 135 NVRILAATNRNI---KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 211 (247)
T ss_dssp CCEEEEEESSCH---HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred CeEEEEecCCCH---HHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHH
Confidence 578999998652 13444455543 223445555444 33444444 3444332 22333333222
Q ss_pred c-CC--cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 002169 848 E-GC--TGADISLICREAAISAIEENLDASRITMQHLKT 883 (957)
Q Consensus 848 ~-g~--sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~ 883 (957)
. .+ +.+++++++++|+..+ +...|+.+|+..
T Consensus 212 ~~~WPGNl~EL~~~l~~a~~~~-----~~~~I~~~dl~~ 245 (247)
T d1ny5a2 212 SYPWYGNVRELKNVIERAVLFS-----EGKFIDRGELSC 245 (247)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC-----CSSEECHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHhC-----CCCeECHHHccc
Confidence 1 22 4589999999888654 355688888753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.03 E-value=9e-13 Score=139.23 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=49.2
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
++.|..+++.+.+.+.+..... .+...|+++|||||||||||++|++||++++.+|+.++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~ 70 (273)
T d1gvnb_ 5 NFTDKQFENRLNDNLEELIQGK---------KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70 (273)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTC---------CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred ccChHHHHHHHHHHHHHHHhcc---------cCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence 4455444455555554444321 24567889999999999999999999999999999999977654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.01 E-value=9.2e-10 Score=120.17 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=95.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc--------
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE-------- 364 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~-------- 364 (957)
+.|.+|.|++..|..|.-....+ + +.||||+||||||||++||+++..+.. +..+.+..
T Consensus 4 ~~f~~I~Gq~~~kral~laa~~~---------~---~h~vLl~G~pG~GKT~lar~~~~iLp~-~~~~~~~~~~~~~~~~ 70 (333)
T d1g8pa_ 4 FPFSAIVGQEDMKLALLLTAVDP---------G---IGGVLVFGDRGTGKSTAVRALAALLPE-IEAVEGCPVSSPNVEM 70 (333)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG---------G---GCCEEEECCGGGCTTHHHHHHHHHSCC-EEEETTCTTCCSSGGG
T ss_pred CChhhccCcHHHHHHHHHHHhcc---------C---CCeEEEECCCCccHHHHHHHHHHhCCC-chhhccCccccCcccc
Confidence 46889999998887655332111 1 247999999999999999999987732 11111100
Q ss_pred ------------------ccccccchhHHHH------HH------------HHHHHhccCCeEEEEcCccccccCCcCCC
Q 002169 365 ------------------VVSQNYGESEQAL------HE------------VFDSASQSAPAVVFIDELDAIAPARKDGG 408 (957)
Q Consensus 365 ------------------l~~~~~ge~e~~i------~~------------vf~~a~~~~p~IL~IDEiD~l~~~~~~~~ 408 (957)
+.....+.+...+ .. .+..|. ..|+||||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~---~gvl~iDEi~~~-------- 139 (333)
T d1g8pa_ 71 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARAN---RGYLYIDECNLL-------- 139 (333)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHT---TEEEEETTGGGS--------
T ss_pred ccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccccccc---ccEeecccHHHH--------
Confidence 0000001111110 01 111221 359999999876
Q ss_pred chHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCC-CHHHHHHHHH
Q 002169 409 EELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVP-SPAQRLEILH 473 (957)
Q Consensus 409 ~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~ 473 (957)
..++++.|++.|+.-. -...+++|+|+|+.+ .++++++. ||+..+.++.| +...+.++..
T Consensus 140 ---~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llD--Rf~~~i~v~~~~~~~~~~~~~~ 212 (333)
T d1g8pa_ 140 ---EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 212 (333)
T ss_dssp ---CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred ---HHHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhh--hhcceeeccCcchhhHHHHHHH
Confidence 3467788999997521 123578999999754 68899999 99988888876 4555555443
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.98 E-value=9.2e-09 Score=116.05 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=55.3
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhh---hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc-ccc
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLS---SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYG 371 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~---~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~-~~g 371 (957)
++|+++.|+.|.-.+....++..+. +-.+ .+++|||+||||||||.|||.||+.++.||+.++|..+... |+|
T Consensus 16 VvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei-~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG 92 (443)
T d1g41a_ 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 92 (443)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTC-CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccc-ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceee
Confidence 8999999999988875544331110 1122 46799999999999999999999999999999999887664 444
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=2.9e-09 Score=107.47 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC------CcEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG------LNFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEI 748 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~------~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEi 748 (957)
.+.++||+||||||||++|+.+++... ..++.+.+..- - -.-..+|.+...+... ...|++|||+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~---~--I~Id~IR~i~~~~~~~~~~~~~KviIId~a 88 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---N--IGIDDIRTIKDFLNYSPELYTRKYVIVHDC 88 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---C--BCHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC---C--CCHHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence 456799999999999999999998763 25777765321 1 1356678877776543 3469999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCH
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
|.+ .....++||..|+. +..++++|++||+++.+.|++++ || ..++++.|..
T Consensus 89 d~l-------------~~~aqNaLLK~LEE--Pp~~t~fiLit~~~~~ll~TI~S--RC-~~i~~~~p~~ 140 (198)
T d2gnoa2 89 ERM-------------TQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--RV-FRVVVNVPKE 140 (198)
T ss_dssp GGB-------------CHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCHH
T ss_pred ccc-------------chhhhhHHHHHHhC--CCCCceeeeccCChhhCHHHHhc--ce-EEEeCCCchH
Confidence 977 45677899999994 45688999999999999999999 87 5788887753
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=5.2e-09 Score=105.63 Aligned_cols=117 Identities=11% Similarity=0.212 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcC------CcEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSG------VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDEL 397 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~------~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEi 397 (957)
.+.++||+||||||||++|+.+++... ..++.+.+.. ..+ .-..+|.+.+.+.. +...|++|||+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~---~~I--~Id~IR~i~~~~~~~~~~~~~KviIId~a 88 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDC 88 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc---CCC--CHHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence 356899999999999999999998763 2477776532 111 23355666665532 33569999999
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCH
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSP 465 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~ 465 (957)
|.+. ....+.|+..|++ ...++++|++|+.++.+.|.+++ |+ ..+.++.|..
T Consensus 89 d~l~-----------~~aqNaLLK~LEE--Pp~~t~fiLit~~~~~ll~TI~S--RC-~~i~~~~p~~ 140 (198)
T d2gnoa2 89 ERMT-----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--RV-FRVVVNVPKE 140 (198)
T ss_dssp GGBC-----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCHH
T ss_pred cccc-----------hhhhhHHHHHHhC--CCCCceeeeccCChhhCHHHHhc--ce-EEEeCCCchH
Confidence 9984 3456779999987 45688999999999999999999 76 3477776653
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.77 E-value=4.5e-08 Score=102.01 Aligned_cols=188 Identities=23% Similarity=0.258 Sum_probs=108.4
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc-----
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY----- 370 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~----- 370 (957)
+|.++.++.+.+.+... .....+|+|+|++|||||++|++++... ...++.++|..+.....
T Consensus 3 v~~S~~~~~~~~~~~~~----------a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lf 72 (247)
T d1ny5a2 3 VFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELF 72 (247)
T ss_dssp CCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhc
Confidence 45555555555554322 2345679999999999999999999765 34688888876533210
Q ss_pred ch-------hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEE
Q 002169 371 GE-------SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLV 434 (957)
Q Consensus 371 ge-------~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~v 434 (957)
|. .......+|+.|..+ .|||||+|.+.. .....|+..++.- ....++.+
T Consensus 73 g~~~~~~~~~~~~~~g~l~~a~gG---tL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~~~~~~~~~~~Rl 138 (247)
T d1ny5a2 73 GYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIEVNVRI 138 (247)
T ss_dssp CBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEECCCEE
T ss_pred CcccCCcCCcccccCCHHHccCCC---EEEEeChHhCCH-----------HHHHHHHHHHHhCCEEECCCCCceecCeEE
Confidence 00 000012245555443 899999998842 2334455655431 11124678
Q ss_pred EEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHH----HHHHHHHcC----CC---CCCChHHHHHHHHHcC
Q 002169 435 IAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRL----EILHALLSG----ME---HSLLDSEVEYLSMATH 496 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~----~Il~~~l~~----~~---~~l~~~~l~~La~~t~ 496 (957)
|++|+.+ +. .+...|+|+. .+.+..|...+|. .+++.++.. .. ..+++..+..|..+.=
T Consensus 139 I~~s~~~--l~-~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~W 215 (247)
T d1ny5a2 139 LAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW 215 (247)
T ss_dssp EEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCC
T ss_pred EEecCCC--HH-HHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCC
Confidence 8888753 22 2333345543 2456777766553 344444432 22 2356777887766542
Q ss_pred CCcHHHHHHHHHHHHHH
Q 002169 497 GFVGADLAALCNEAALV 513 (957)
Q Consensus 497 g~~gaDi~~l~~~A~~~ 513 (957)
.-+-++|+++++.|+..
T Consensus 216 PGNl~EL~~~l~~a~~~ 232 (247)
T d1ny5a2 216 YGNVRELKNVIERAVLF 232 (247)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 22447888888877543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.70 E-value=2.8e-07 Score=95.77 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=112.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhH-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE- 374 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e- 374 (957)
+++.|-++++++|.+. .++.++|+||+|+|||+|++.++..++..+..+++............
T Consensus 12 ~~f~GR~~el~~l~~~----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 75 (283)
T d2fnaa2 12 KDFFDREKEIEKLKGL----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 75 (283)
T ss_dssp GGSCCCHHHHHHHHHT----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHH
T ss_pred hhCCChHHHHHHHHhc----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccccccHHH
Confidence 5789999988887542 24689999999999999999999999998888876543322110000
Q ss_pred ---------------------------------------------HHHHHHHHHH--hccCCeEEEEcCccccccCCcCC
Q 002169 375 ---------------------------------------------QALHEVFDSA--SQSAPAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 375 ---------------------------------------------~~i~~vf~~a--~~~~p~IL~IDEiD~l~~~~~~~ 407 (957)
..+..+++.. ....+.++++||++.+.......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~ 155 (283)
T d2fnaa2 76 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 155 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHH
Confidence 0122223222 23457889999999886543221
Q ss_pred CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh-------CCCCcceeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 408 GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR-------RPGRLDREIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 408 ~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~-------r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
+...+...++. ...+..+++......+...+. -.+|+...+.++..+.++..+++...+....
T Consensus 156 -------~~~~l~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~ 225 (283)
T d2fnaa2 156 -------LLPALAYAYDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD 225 (283)
T ss_dssp -------CHHHHHHHHHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHh---hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcC
Confidence 22223333322 344555555443222211111 1235566789999999999999988776655
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
.... +++.+.+.+.|. +..|..++.
T Consensus 226 ~~~~--~~~~i~~~~~G~-P~~L~~~~~ 250 (283)
T d2fnaa2 226 IDFK--DYEVVYEKIGGI-PGWLTYFGF 250 (283)
T ss_dssp CCCC--CHHHHHHHHCSC-HHHHHHHHH
T ss_pred CCHH--HHHHHHHHhCCC-HHHHHHHHH
Confidence 4433 366777888776 345554443
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.67 E-value=4.9e-09 Score=109.84 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=40.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
.+...|++|||+||||||||++|+++|++++.+++.++++++...
T Consensus 27 ~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~ 71 (273)
T d1gvnb_ 27 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 71 (273)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence 356778999999999999999999999999999999999887654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.62 E-value=5.8e-07 Score=93.25 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=113.9
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
|...-++++|.++..+++.+. ..+.++|+||+|+|||+|++.++...+..+..++........
T Consensus 7 p~~~~~~f~GR~~el~~l~~~-----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~ 69 (283)
T d2fnaa2 7 PKDNRKDFFDREKEIEKLKGL-----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 69 (283)
T ss_dssp CCCSGGGSCCCHHHHHHHHHT-----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCChhhCCChHHHHHHHHhc-----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccc
Confidence 444568899999888776542 235799999999999999999999999888777653321110
Q ss_pred c----------c------------------------------------chHHHHHHHHHHHH--hCCCeEEEEeCCchhh
Q 002169 721 V----------G------------------------------------ESEKAVRSLFAKAR--ANAPSIIFFDEIDGLA 752 (957)
Q Consensus 721 v----------g------------------------------------~~~~~ir~~f~~A~--~~~p~ILfiDEid~l~ 752 (957)
. . .....+..+++... ...+.++++||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~ 149 (283)
T d2fnaa2 70 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 149 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred cccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhc
Confidence 0 0 00011233343332 3557899999999886
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC-------C--ChhhhCCCCcceecccCCCCHHHHHH
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK-------I--DPALLRPGRFDRLLYVGPPNETDREE 823 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~-------i--d~aLlr~gRfd~~i~~~~P~~~er~~ 823 (957)
..... . +...+...++. ...+..++++..... . ...+ .+|+...+++++.+.++..+
T Consensus 150 ~~~~~-----~----~~~~l~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~L~~l~~~e~~~ 215 (283)
T d2fnaa2 150 KLRGV-----N----LLPALAYAYDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIE 215 (283)
T ss_dssp GCTTC-----C----CHHHHHHHHHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHH
T ss_pred ccchH-----H----HHHHHHHHHHh---hhhhhhhhccccchHHHHHHHhhhhcchh--cccceeEEeeCCCCHHHHHH
Confidence 43211 1 12222222221 223444444332111 1 1111 23566788999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHH
Q 002169 824 IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 824 Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
+++..+...++..+ +.+.+.+.+.|. +.-+..++.
T Consensus 216 ~l~~~~~~~~~~~~-~~~~i~~~~~G~-P~~L~~~~~ 250 (283)
T d2fnaa2 216 FLRRGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGF 250 (283)
T ss_dssp HHHHHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHH
T ss_pred HHHhhhhhcCCCHH-HHHHHHHHhCCC-HHHHHHHHH
Confidence 99988877666543 477888999995 555555554
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.41 E-value=7e-07 Score=86.88 Aligned_cols=100 Identities=23% Similarity=0.382 Sum_probs=59.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc----------------cccc----------------ccc-------
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE----------------VVSQ----------------NYG------- 371 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~----------------l~~~----------------~~g------- 371 (957)
.|+|+||||||||||++++++.++.....+.... +... ..+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhh
Confidence 4899999999999999999998865321111000 0000 001
Q ss_pred -hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 372 -ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 372 -e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
......+..+..+....|++|++||++.... ........+...+. ..+..+|++++...
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--------~~~~~~~~l~~~l~----~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--------FSKKFRDLVRQIMH----DPNVNVVATIPIRD 141 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--------GCHHHHHHHHHHHT----CTTSEEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccch--------hhHHHHHHHHHHhc----cCCCEEEEEEccHH
Confidence 1122345556667778899999999754321 12334444555553 34567788877654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.41 E-value=6.4e-07 Score=87.20 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=62.9
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC----------------c-----------------cccccc------
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE----------------L-----------------FSKWVG------ 722 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~----------------l-----------------~~~~vg------ 722 (957)
.++|.||||||||||+++|++.+......+...+ . ..++.-
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhh
Confidence 3899999999999999999998754321111100 0 000000
Q ss_pred -chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 723 -ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 723 -~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
......+..++.+....|++|++||++.... ........+...+. ..+..+|+++|+...
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~----------~~~~~~~~l~~~l~----~~~~~il~~~h~~~~ 142 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL----------FSKKFRDLVRQIMH----DPNVNVVATIPIRDV 142 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG----------GCHHHHHHHHHHHT----CTTSEEEEECCSSCC
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccch----------hhHHHHHHHHHHhc----cCCCEEEEEEccHHH
Confidence 0122346778888899999999999874421 23444555555554 335678888887643
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=2.5e-07 Score=94.82 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=70.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE--EEEeccccccc--------------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL--FTVNGPEVVSQ-------------------------------- 368 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~--i~i~~~~l~~~-------------------------------- 368 (957)
++.+.+++.+.|.||+|||||||++++++.....- +.+++.++...
T Consensus 20 sl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~ 99 (232)
T d2awna2 20 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 99 (232)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC----------------
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHH
Confidence 46788999999999999999999999997663321 33333221100
Q ss_pred ---ccchhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHH
Q 002169 369 ---NYGESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 419 (957)
Q Consensus 369 ---~~ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~L 419 (957)
...+..+++.++++ .|....|.+|++||-- ...+.....++
T Consensus 100 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt----------s~LD~~~~~~i 169 (232)
T d2awna2 100 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL----------SNLDAALRVQM 169 (232)
T ss_dssp -----CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT----------TTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC----------CCCCHHHHHHH
Confidence 00123344555554 3556789999999931 12233344556
Q ss_pred HHHhhccccCCCeEEEEecCCCCC
Q 002169 420 LNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 420 l~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++++..+....+.++|++|+..+.
T Consensus 170 ~~~l~~l~~~~g~tii~vTHd~~~ 193 (232)
T d2awna2 170 RIEISRLHKRLGRTMIYVTHDQVE 193 (232)
T ss_dssp HHHHHHHHHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHH
Confidence 666666655667888999976543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.34 E-value=4.4e-07 Score=92.89 Aligned_cols=67 Identities=27% Similarity=0.358 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCc
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRF 807 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRf 807 (957)
-|..+++|....|.||++||+.+-++. ....+++..+..+....+++||++||+++. .+ .+
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~------------~~~~~i~~~l~~l~~~~g~tii~vTHd~~~-----a~--~~ 212 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDS------------KTGEKIMQLLKKLNEEDGKTVVVVTHDINV-----AR--FG 212 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHTTCCEEEEECSCHHH-----HT--TS
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCH------------HHHHHHHHHHHHHHHhhCCEEEEECCCHHH-----HH--hC
Confidence 378899999999999999999865433 233344555555545568899999996532 23 45
Q ss_pred ceeccc
Q 002169 808 DRLLYV 813 (957)
Q Consensus 808 d~~i~~ 813 (957)
|+++.+
T Consensus 213 drv~~m 218 (230)
T d1l2ta_ 213 ERIIYL 218 (230)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 666544
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.1e-07 Score=99.13 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=28.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|+||+|||||||++++++.+.
T Consensus 34 sl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~ 65 (251)
T d1jj7a_ 34 TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65 (251)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 46789999999999999999999999997764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.31 E-value=2.7e-07 Score=95.01 Aligned_cols=111 Identities=24% Similarity=0.302 Sum_probs=70.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc-----------ccc-------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS-----------QNY------------------- 370 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~-----------~~~------------------- 370 (957)
++.+++++.+.|.||+|||||||++++++..... -+.+++.++.. ..+
T Consensus 23 sl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni 102 (240)
T d1g2912 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred eeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhh
Confidence 4678899999999999999999999999776432 12333322110 000
Q ss_pred -----------chhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHH
Q 002169 371 -----------GESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQ 413 (957)
Q Consensus 371 -----------ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~ 413 (957)
.+..+++.++++ .|....|.||++||-- ...+.
T Consensus 103 ~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt----------~~LD~ 172 (240)
T d1g2912 103 AFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPL----------SNLDA 172 (240)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT----------TTSCH
T ss_pred hhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC----------cccCH
Confidence 122233444444 4566789999999932 22234
Q ss_pred HHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 414 ~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
.....+++++..+....+..+|++|+..+.
T Consensus 173 ~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~ 202 (240)
T d1g2912 173 KLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence 445566677766655557889999976543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.29 E-value=3.5e-07 Score=94.01 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=70.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE--EEEeccccccc-------------------------------c
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL--FTVNGPEVVSQ-------------------------------N 369 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~--i~i~~~~l~~~-------------------------------~ 369 (957)
++.+.+++.+.|.||+|||||||++++++.....- +.+++.++... .
T Consensus 26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 105 (239)
T d1v43a3 26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI 105 (239)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHH
Confidence 46788999999999999999999999998764321 33343222110 0
Q ss_pred ----cchhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHH
Q 002169 370 ----YGESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 419 (957)
Q Consensus 370 ----~ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~L 419 (957)
..+...++.++++ .|....|.||++||-- ...+.....++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt----------s~LD~~~~~~i 175 (239)
T d1v43a3 106 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL----------SNLDAKLRVAM 175 (239)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT----------TTSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc----------ccCCHHHHHHH
Confidence 0122334444444 4566789999999931 11223334556
Q ss_pred HHHhhccccCCCeEEEEecCCCCC
Q 002169 420 LNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 420 l~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
.+++..+....++.+|.+|+..+.
T Consensus 176 ~~ll~~l~~~~g~tii~vTHd~~~ 199 (239)
T d1v43a3 176 RAEIKKLQQKLKVTTIYVTHDQVE 199 (239)
T ss_dssp HHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCeEEEEeCCHHH
Confidence 666666655567889999976543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=98.29 E-value=7.6e-08 Score=98.45 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=72.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccc-----c-------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQN-----Y------------------------- 370 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~-----~------------------------- 370 (957)
++.+.+++.+.|.||+|||||||++++++..... -+.+++.++.... +
T Consensus 20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~ 99 (229)
T d3d31a2 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (229)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhh
Confidence 4678899999999999999999999999876433 2444443322100 0
Q ss_pred -c-hhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 371 -G-ESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 371 -g-e~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
+ +..+++.++++ +|....|.||++||- ....+......+.++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP----------ts~LD~~~~~~i~~~ 169 (229)
T d3d31a2 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP----------LSALDPRTQENAREM 169 (229)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS----------STTSCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCC----------CcCCCHHHHHHHHHH
Confidence 0 11122333332 466678999999993 122334445566777
Q ss_pred hhccccCCCeEEEEecCCCCCc
Q 002169 423 MDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+..+....++.+|++|+..+.+
T Consensus 170 l~~l~~~~g~tii~vtHd~~~~ 191 (229)
T d3d31a2 170 LSVLHKKNKLTVLHITHDQTEA 191 (229)
T ss_dssp HHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHhcCCcEEEEEcCCHHHH
Confidence 7776666788899999776543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.9e-07 Score=94.81 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGR 806 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gR 806 (957)
..|..+++|....|.||++||+.+-++. ....+++..+..+....+.++|++||+.+ +++ .
T Consensus 157 kQRvaiARal~~~p~ililDEpTs~LD~------------~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-----~~~--~ 217 (251)
T d1jj7a_ 157 RQAVALARALIRKPCVLILDDATSALDA------------NSQLQVEQLLYESPERYSRSVLLITQHLS-----LVE--Q 217 (251)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHTCGGGGGCEEEEECSCHH-----HHH--T
T ss_pred ceEEEEeeccccCCcEEEecCcCcccCh------------hhHHHHHHHHHHHhhhcCCEEEEEeCCHH-----HHH--h
Confidence 3478899999999999999999966533 23334555565555555788999999754 233 4
Q ss_pred cceeccc
Q 002169 807 FDRLLYV 813 (957)
Q Consensus 807 fd~~i~~ 813 (957)
+|+++.+
T Consensus 218 aDrI~vl 224 (251)
T d1jj7a_ 218 ADHILFL 224 (251)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 5655544
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=3.5e-07 Score=94.05 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..+..+....+.+||++||+++.
T Consensus 144 RvaiAraL~~~P~iLllDEPts~LD~------------~~~~~i~~ll~~l~~~~g~tii~vTHd~~~ 199 (239)
T d1v43a3 144 RVAVARAIVVEPDVLLMDEPLSNLDA------------KLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 199 (239)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHhhhccCCCceeecCCcccCCH------------HHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 77889999999999999999966533 223344444444444457899999998765
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.25 E-value=3.6e-07 Score=93.51 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+..++.+.|.||+|||||||++++++...
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~ 56 (230)
T d1l2ta_ 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (230)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCcchhhHhccCCCC
Confidence 46788999999999999999999999997653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=98.25 E-value=5.7e-07 Score=91.82 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....++...+..+....++.||++||+++.
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~------------~~~~~i~~~l~~l~~~~g~tii~vtHd~~~ 190 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDP------------RTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCH------------HHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred chhhhhhhhccCCceeecCCCcCCCH------------HHHHHHHHHHHHHHhcCCcEEEEEcCCHHH
Confidence 77899999999999999999966433 333344444444444557899999998765
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.24 E-value=5.8e-07 Score=92.47 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..+..+....+..||++||+.+.
T Consensus 147 Rv~IAraL~~~P~iLllDEPt~~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~ 202 (240)
T d1g2912 147 RVALGRAIVRKPQVFLMDEPLSNLDA------------KLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (240)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEecCCCcccCH------------HHHHHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence 78899999999999999999966533 333345555555444457899999998765
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=4.4e-07 Score=92.94 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..|..+....+.+||++||+++.
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~------------~~~~~i~~~l~~l~~~~g~tii~vTHd~~~ 193 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDA------------ALRVQMRIEISRLHKRLGRTMIYVTHDQVE 193 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66788999999999999999866533 233344445554444557899999998764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=2.4e-07 Score=95.81 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++.+..
T Consensus 23 sl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p 55 (241)
T d2pmka1 23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 55 (241)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467889999999999999999999999987643
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.20 E-value=3.5e-07 Score=94.13 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.++.++.+.|.||+|||||||++++++..
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 4678899999999999999999999999765
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.20 E-value=2.9e-07 Score=94.71 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++.. ... ++...+..+....+++||++||+++.
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~---------~~~---~i~~~i~~l~~~~g~tvi~vTHd~~~ 203 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDAR---------MRD---SARALVKEVQSRLGVTLLVVSHDPAD 203 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGG---------GHH---HHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHhHHhhcccceeecCCccCCCHH---------HHH---HHHHHHHHHHhccCCEEEEEECCHHH
Confidence 788999999999999999999765432 222 33333333333447889999998654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=9.5e-07 Score=91.14 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+.|..+++|....|.||++||+.+-++.. ..+.+-+.+..+. . +.++|++||+++.+
T Consensus 145 ~QRvalARal~~~p~ililDEpts~LD~~---------~~~~i~~~l~~l~---~--~~Tvi~itH~l~~~ 201 (241)
T d2pmka1 145 RQRIAIARALVNNPKILIFDEATSALDYE---------SEHVIMRNMHKIC---K--GRTVIIIAHRLSTV 201 (241)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHH---------HHHHHHHHHHHHH---T--TSEEEEECSSGGGG
T ss_pred HHHHhhhhhhhcccchhhhhCCccccCHH---------HHHHHHHHHHHHh---C--CCEEEEEECCHHHH
Confidence 34788899999999999999999765432 2222223333332 2 56889999987653
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=5.6e-07 Score=92.58 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=70.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE--EEEeccccccc--------------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL--FTVNGPEVVSQ-------------------------------- 368 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~--i~i~~~~l~~~-------------------------------- 368 (957)
++.+..++.+.|.||+|||||||++++++.....- +.+++.++...
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~ 104 (240)
T d3dhwc1 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 104 (240)
T ss_dssp EEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHH
Confidence 46788999999999999999999999997664321 33443322110
Q ss_pred --------ccchhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 369 --------NYGESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 369 --------~~ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
...+...++.++++ .|....|.||++||--. ..+..
T Consensus 105 ~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~----------~LD~~ 174 (240)
T d3dhwc1 105 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS----------ALDPA 174 (240)
T ss_dssp HHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGG----------SSCHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccc----------cCCHH
Confidence 00122234444444 45667899999999311 12233
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
...++++++..+....++.+|.+|+..+.
T Consensus 175 ~~~~i~~~l~~l~~~~g~tvi~vTHdl~~ 203 (240)
T d3dhwc1 175 TTRSILELLKDINRRLGLTILLITHEMDV 203 (240)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEBSCHHH
T ss_pred HhhHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence 44556666666655567889999976543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.16 E-value=8.3e-07 Score=92.36 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
+-|..+++|....|.||++||+.+-++.. ..+.+.+++..+. . +.++|++||+.+.
T Consensus 158 kQRvaiARal~~~p~ililDEpts~LD~~---------~~~~i~~~l~~l~---~--~~Tvi~itH~l~~ 213 (253)
T d3b60a1 158 RQRIAIARALLRDSPILILDEATSALDTE---------SERAIQAALDELQ---K--NRTSLVIAHRLST 213 (253)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHH---------HHHHHHHHHHHHH---T--TSEEEEECSCGGG
T ss_pred HHHHHHHHHHhcCCCEEEeccccccCCHH---------HHHHHHHHHHHhc---c--CCEEEEEECCHHH
Confidence 34777888888899999999999765432 2333333444332 2 4578889998754
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.15 E-value=3.5e-07 Score=95.28 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|+||+|||||||++++++...
T Consensus 35 sl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~ 66 (253)
T d3b60a1 35 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66 (253)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcccC
Confidence 46788999999999999999999999997664
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.15 E-value=1.4e-07 Score=98.39 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCc
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRF 807 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRf 807 (957)
.|..+++|....|.||+|||+.+-++.. +.. .++..+..+.. +.++|++||+++.+ + ++
T Consensus 161 QRi~iARal~~~p~ililDEpts~LD~~---------t~~---~i~~~l~~l~~--~~TvI~itH~~~~~-----~--~~ 219 (255)
T d2hyda1 161 QRLSIARIFLNNPPILILDEATSALDLE---------SES---IIQEALDVLSK--DRTTLIVAHRLSTI-----T--HA 219 (255)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHH---------HHH---HHHHHHHHHTT--TSEEEEECSSGGGT-----T--TC
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHH---------HHH---HHHHHHHHHhc--CCEEEEEeCCHHHH-----H--hC
Confidence 4778888888999999999999765432 222 33333333322 45788899987543 3 45
Q ss_pred ceeccc
Q 002169 808 DRLLYV 813 (957)
Q Consensus 808 d~~i~~ 813 (957)
|+++.+
T Consensus 220 D~ii~l 225 (255)
T d2hyda1 220 DKIVVI 225 (255)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 555544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=9.1e-07 Score=90.99 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..+..+....++.||++||+.+.
T Consensus 148 RvaiAraL~~~P~lLllDEPt~~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~ 203 (240)
T d3dhwc1 148 RVAIARALASNPKVLLCDEATSALDP------------ATTRSILELLKDINRRLGLTILLITHEMDV 203 (240)
T ss_dssp HHHHHHHHHTCCSEEEEESGGGSSCH------------HHHHHHHHHHHHHHHHHCCEEEEEBSCHHH
T ss_pred HHHHhhhhccCCCeEEeccccccCCH------------HHhhHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence 78899999999999999999866533 223334444444434447899999998765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.11 E-value=1.3e-06 Score=89.63 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....+...+..+....++.||++||+++.
T Consensus 134 RvaiAral~~~P~illlDEPts~LD~------------~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~ 189 (240)
T d2onka1 134 RVALARALVIQPRLLLLDEPLSAVDL------------KTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCH------------HHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred HHHHHHHHhccCCceEecCccccCCH------------HHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 78899999999999999999865432 333344444444434447789999997765
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.10 E-value=3.9e-07 Score=94.89 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|+||+|+|||||++++++...
T Consensus 38 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 69 (255)
T d2hyda1 38 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69 (255)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence 46788999999999999999999999997664
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.07 E-value=9.1e-07 Score=91.44 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
+.|..+++|....|.||++||+.+-++.... .. ++..+..+.. +.+||++||+++.
T Consensus 145 kQRv~iARal~~~p~ililDEpts~LD~~~~--------~~----i~~~l~~l~~--~~Tvi~itH~l~~ 200 (242)
T d1mv5a_ 145 RQRLAIARAFLRNPKILMLDEATASLDSESE--------SM----VQKALDSLMK--GRTTLVIAHRLST 200 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSC--------CH----HHHHHHHHHT--TSEEEEECCSHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCCccccCHHHH--------HH----HHHHHHHHcC--CCEEEEEECCHHH
Confidence 3477889999899999999999977654321 12 3333333322 5678899997754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.06 E-value=1.9e-06 Score=86.53 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.|+++||+.+.++.. ....++..+....+ ..+++||.+++...
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~--------~~~~i~~~l~~~~~----~~~~~ii~~~~~l~ 187 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDED--------SKHKVLKSILEILK----EKGIVIISSREELS 187 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTT--------THHHHHHHHHHHHH----HHSEEEEEESSCCT
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHH--------HHHHHHHHHHHHHh----CCCEEEEEEechhh
Confidence 677888888999999999999765432 22334444444333 33677777776543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=2e-06 Score=88.53 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++.. ..+.+.+++..+. .. +..||++||+++.
T Consensus 141 rv~iA~al~~~p~illLDEPt~gLD~~---------~~~~i~~~i~~~~---~~-g~tii~~tH~l~~ 195 (238)
T d1vpla_ 141 KLLIARALMVNPRLAILDEPTSGLDVL---------NAREVRKILKQAS---QE-GLTILVSSHNMLE 195 (238)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHH---------HHHHHHHHHHHHH---HT-TCEEEEEECCHHH
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHH---------HHHHHHHHHHHHH---hc-CCEEEEEeCCHHH
Confidence 667888889999999999999765432 2333334444433 23 6789999998765
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.03 E-value=3.2e-06 Score=87.87 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++. ....+++..+..+.. .++.||++||+.+.+
T Consensus 158 rv~iAraL~~~P~llilDEPt~gLD~------------~~~~~i~~~i~~l~~-~g~til~vsHdl~~~ 213 (254)
T d1g6ha_ 158 LVEIGRALMTNPKMIVMDEPIAGVAP------------GLAHDIFNHVLELKA-KGITFLIIEHRLDIV 213 (254)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHH-TTCEEEEECSCCSTT
T ss_pred HHHHHHHHHhCcCchhhcCCcccCCH------------HHHHHHHHHHHHHHH-CCCEEEEEeCcHHHH
Confidence 67788889999999999999966432 223334444444433 378899999988775
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=98.02 E-value=1.8e-06 Score=89.02 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++ .....++...+..+... +..||++||+.+.
T Consensus 147 rv~iAraL~~~P~lLllDEPt~gLD------------~~~~~~i~~~i~~l~~~-g~til~~tH~l~~ 201 (240)
T d1ji0a_ 147 MLAIGRALMSRPKLLMMDEPSLGLA------------PILVSEVFEVIQKINQE-GTTILLVEQNALG 201 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCC------------HHHHHHHHHHHHHHHHT-TCCEEEEESCHHH
T ss_pred HHHHHHHHHhCCCEeeecCCCcCCC------------HHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 6778889999999999999996643 23333445555544333 6789999997765
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.98 E-value=3.1e-06 Score=87.26 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|.||+|+|||||.+++++.+.
T Consensus 26 s~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~ 57 (240)
T d1ji0a_ 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46788999999999999999999999997764
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.97 E-value=4.6e-07 Score=93.71 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+++++.+.|+||+|+|||||++++++.+
T Consensus 22 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999999999999999999999765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.96 E-value=2.6e-06 Score=87.25 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=64.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc--------c-------------------------cchhH
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ--------N-------------------------YGESE 374 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~--------~-------------------------~ge~e 374 (957)
..+.|.||+|||||||++++++.+... -+.+++.++... | ..+..
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~ 104 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHH
Confidence 567789999999999999999877432 134444322110 0 01222
Q ss_pred HHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc
Q 002169 375 QALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 428 (957)
Q Consensus 375 ~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~ 428 (957)
+++.++++ .|....|.||++||-- ...+......+.+.+..+..
T Consensus 105 ~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt----------s~LD~~~~~~i~~~i~~l~~ 174 (240)
T d2onka1 105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL----------SAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT----------SSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc----------ccCCHHHHHHHHHHHHHHHH
Confidence 34444444 4566789999999931 12233444556666666655
Q ss_pred CCCeEEEEecCCCCC
Q 002169 429 TDGVLVIAATNRPDS 443 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ 443 (957)
..++.+|.+|+..+.
T Consensus 175 ~~g~tvi~vtHd~~~ 189 (240)
T d2onka1 175 EFDVPILHVTHDLIE 189 (240)
T ss_dssp HHTCCEEEEESCHHH
T ss_pred hcCCeEEEEeCCHHH
Confidence 557788888876543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.96 E-value=1.5e-06 Score=90.48 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=29.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+.+++.+.|.||+|+|||||++++++.+..
T Consensus 24 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p 56 (254)
T d1g6ha_ 24 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 56 (254)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC
Confidence 467889999999999999999999999987643
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=4.6e-06 Score=85.76 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=29.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+.+++-+-|.||+|+|||||.+++++.+..
T Consensus 22 s~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p 54 (238)
T d1vpla_ 22 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 54 (238)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 467889999999999999999999999987643
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.90 E-value=1.2e-06 Score=91.21 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++++...
T Consensus 22 s~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~ 53 (258)
T d1b0ua_ 22 SLQARAGDVISIIGSSGSGKSTFLRCINFLEK 53 (258)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc
Confidence 46788999999999999999999999997663
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.87 E-value=8.4e-06 Score=84.71 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..|..+... +..||++||+++.
T Consensus 157 Rv~iAraL~~~P~llilDEPT~gLD~------------~~~~~i~~ll~~l~~~-g~til~vtHdl~~ 211 (258)
T d1b0ua_ 157 RVSIARALAMEPDVLLFDEPTSALDP------------ELVGEVLRIMQQLAEE-GKTMVVVTHEMGF 211 (258)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHT-TCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCH------------HHHHHHHHhhhhhccc-CCceEEEeCCHHH
Confidence 77899999999999999999976543 2223344444444333 5678999997765
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.82 E-value=9.5e-06 Score=81.18 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|.||+|+|||||.+++++.+.
T Consensus 21 s~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 21 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcccc
Confidence 46788999999999999999999999998663
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.81 E-value=2.2e-05 Score=82.52 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=66.8
Q ss_pred HHHhcCCC--CCCcceeeCCCCChhhHHHHHHHHHhCCc--EEEEeC--------CCcccc-------------------
Q 002169 671 AFKRIGTR--PPTGILMFGPPGCSKTLMARAVASEAGLN--FLAVKG--------PELFSK------------------- 719 (957)
Q Consensus 671 ~~~~l~~~--~~~giLL~GPpGtGKTtlAkaiA~~~~~~--~i~v~~--------~~l~~~------------------- 719 (957)
+++++.+. +..-+.|+||+|+|||||+++|++.+... -|.+++ +.++..
T Consensus 51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 130 (281)
T d1r0wa_ 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKS 130 (281)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHH
T ss_pred EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHH
Confidence 34444444 44449999999999999999999876321 122221 111100
Q ss_pred --------------------ccc------chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 720 --------------------WVG------ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 720 --------------------~vg------~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
.++ ...++.|..+++|....|.||++||+.+-++. .....++
T Consensus 131 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~------------~~~~~i~ 198 (281)
T d1r0wa_ 131 VVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV------------FTEEQVF 198 (281)
T ss_dssp HHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH------------HHHHHHH
T ss_pred HHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCH------------HHHHHHH
Confidence 011 12344588899999999999999999865432 2222344
Q ss_pred HH-HhccccCCcEEEEEecCCCC
Q 002169 774 VE-LDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 774 ~~-ld~~~~~~~v~VI~aTN~~~ 795 (957)
.. +... ..+.++|++||+.+
T Consensus 199 ~~~~~~~--~~~~tvi~itH~~~ 219 (281)
T d1r0wa_ 199 ESCVCKL--MANKTRILVTSKME 219 (281)
T ss_dssp HHCCCCC--TTTSEEEEECSCHH
T ss_pred HHHHHHh--hCCCEEEEEechHH
Confidence 33 2222 23567888999763
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=1.3e-05 Score=82.07 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+...-+.|.||+|+||||+.++|++..
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl~ 49 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGMT 49 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344558999999999999999999753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=9.9e-06 Score=76.51 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=27.9
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
+.|+|.|||||||||+||+||..++.+|+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id 32 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 32 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 569999999999999999999999999874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=1.2e-05 Score=75.96 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=27.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+.|+|+|||||||||+|++||..++.+++.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id 32 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 32 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 579999999999999999999999998864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.63 E-value=0.00039 Score=72.59 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=91.4
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcE---EEEeccccccc-
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNL---FTVNGPEVVSQ- 368 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~---i~i~~~~l~~~- 368 (957)
++.|.+..++.|.+.+... +-.....|.|||..|+||||||+.+.+.. +..| +-++.+...+.
T Consensus 21 ~~~gR~~~~~~i~~~L~~~---------~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~ 91 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 91 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred ceeCcHHHHHHHHHHHHhc---------cCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHH
Confidence 4678999888888875321 11224567899999999999999998763 2222 22322111000
Q ss_pred -----------------------ccchhHHHH-HHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 369 -----------------------NYGESEQAL-HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 369 -----------------------~~ge~e~~i-~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
......... ..+........++++++|+++... ++ ..+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~----------------~~-~~~~ 154 (277)
T d2a5yb3 92 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI-RWAQ 154 (277)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-HHHH
T ss_pred HHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHh----------------hh-hhhc
Confidence 001111122 223444456678899999986321 11 1111
Q ss_pred ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCC-hHHHHHHHHHcCCC
Q 002169 425 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLL-DSEVEYLSMATHGF 498 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~-~~~l~~La~~t~g~ 498 (957)
. .+..+|.||... .+-..+.. +. ..+.+...+.++-.++|..+......... +.....+++.+.|.
T Consensus 155 ~----~~srilvTTR~~-~v~~~~~~--~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~Gl 221 (277)
T d2a5yb3 155 E----LRLRCLVTTRDV-EISNAASQ--TC-EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 221 (277)
T ss_dssp H----TTCEEEEEESBG-GGGGGCCS--CE-EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c----cCceEEEEeehH-HHHHhcCC--CC-ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCC
Confidence 1 233567777544 22222222 21 34788899999999999775433322211 12235566666665
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.62 E-value=4.9e-05 Score=72.85 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
++-|+|.|||||||||+|+++++.+|.+++.+++..+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 5678899999999999999999999999998876443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.59 E-value=0.00025 Score=74.09 Aligned_cols=169 Identities=11% Similarity=0.107 Sum_probs=92.7
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC----Cc---EEEEeCCCccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG----LN---FLAVKGPELFS 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~----~~---~i~v~~~~l~~ 718 (957)
.++.|.+..++.|.+.+.. ..-.....+.|+|..|+||||||+.+.+... .. .+-+..+....
T Consensus 20 ~~~~gR~~~~~~i~~~L~~----------~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~ 89 (277)
T d2a5yb3 20 MTCYIREYHVDRVIKKLDE----------MCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP 89 (277)
T ss_dssp CCSCCCHHHHHHHHHHHHH----------HTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST
T ss_pred CceeCcHHHHHHHHHHHHh----------ccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCC
Confidence 3467888888888777642 1112233478999999999999999987632 11 22233222111
Q ss_pred c------------------------cccchHHHH-HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 719 K------------------------WVGESEKAV-RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 719 ~------------------------~vg~~~~~i-r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
. ......... ..++.......+++|+||+++... .+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~-------------------~~ 150 (277)
T d2a5yb3 90 KSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-------------------TI 150 (277)
T ss_dssp THHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-------------------HH
T ss_pred HHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHh-------------------hh
Confidence 0 001111122 233444556678999999987321 11
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHccCCc
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD--VNIRELACLSEGCT 851 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~--~~l~~la~~t~g~s 851 (957)
..+.. .+..||+||....... .+.. +. ..+.+...+.++-.++|..+....+.... ....++++.+.|..
T Consensus 151 ~~~~~----~~srilvTTR~~~v~~-~~~~--~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP 222 (277)
T d2a5yb3 151 RWAQE----LRLRCLVTTRDVEISN-AASQ--TC-EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 222 (277)
T ss_dssp HHHHH----TTCEEEEEESBGGGGG-GCCS--CE-EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred hhhcc----cCceEEEEeehHHHHH-hcCC--CC-ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCH
Confidence 22221 1345777776543211 2211 21 35778999999999998765443332211 11356677777743
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.59 E-value=1.2e-05 Score=77.70 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE 364 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~ 364 (957)
.+.|+|.|||||||||||++||..++.+++......
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~ 42 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE 42 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHH
Confidence 567999999999999999999999999887655443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.53 E-value=1.7e-05 Score=76.59 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
.+.|+|.|||||||||+|++||..++.+++......
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~ 42 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE 42 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHH
Confidence 466999999999999999999999999988665433
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=3.7e-05 Score=78.51 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+++++.+.|.||+|+|||||.+++++..
T Consensus 19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~ 49 (231)
T d1l7vc_ 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT 49 (231)
T ss_dssp EEEEETTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4678899999999999999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.43 E-value=3.5e-05 Score=73.58 Aligned_cols=29 Identities=41% Similarity=0.740 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.|||||||||+|+.||..++.+++.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~ 34 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSGLKYIN 34 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 58899999999999999999999998864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=0.00021 Score=74.83 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|+||+|+|||||++++++.+.
T Consensus 56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence 46788999999999999999999999998764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.39 E-value=3.9e-05 Score=73.28 Aligned_cols=30 Identities=37% Similarity=0.761 Sum_probs=27.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..|+|.|||||||||+|+.||..++.+++.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~ 34 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYIN 34 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 458899999999999999999999999875
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.38 E-value=3.4e-05 Score=74.04 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=28.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEe
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 361 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~ 361 (957)
++|+|.|+||+||||++++||..+|.+|+..+
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d 32 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence 46899999999999999999999999988643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.37 E-value=4.1e-05 Score=73.43 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=28.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
++|+|+|+||+||||++|+||..++.+|+..
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~ 31 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4689999999999999999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.35 E-value=2.9e-05 Score=74.55 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=31.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
-|+|.|||||||||+|++||++++.+++.+++..+
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 38899999999999999999999999999887543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.33 E-value=4.3e-05 Score=73.78 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=28.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+.|+|.|+|||||||+++.+|..+|.+|+..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 5689999999999999999999999998753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.33 E-value=0.00021 Score=72.47 Aligned_cols=80 Identities=25% Similarity=0.236 Sum_probs=54.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc--------------------------c--cch
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ--------------------------N--YGE 372 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~--------------------------~--~ge 372 (957)
-|++++.-++|+||||+|||++|..+|... +.....++..+-... + ...
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG 100 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence 468899999999999999999999888764 445555543210000 0 011
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
....+..+........|.+++||.++.+...
T Consensus 101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~ 131 (242)
T d1tf7a2 101 LEDHLQIIKSEINDFKPARIAIDSLSALARG 131 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHHHHHHHHHHhcCCceeeeecchhhhcC
Confidence 2334455555666778999999999888643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.32 E-value=7.8e-05 Score=71.25 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
.+-|+|+||||+||||+|++|++.++..++.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~ 36 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence 4678999999999999999999999988877764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.31 E-value=5.6e-05 Score=72.94 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=28.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+.|+|.|+|||||||+|+.+|..+|.+|+..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 5688999999999999999999999999863
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=5.9e-05 Score=72.43 Aligned_cols=31 Identities=35% Similarity=0.636 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEe
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 361 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~ 361 (957)
.|+|.|+|||||||+++++|..++.+|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D 33 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence 3777799999999999999999999988543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=7.2e-05 Score=71.79 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=27.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.++|.|+|||||||+++++|..++.+|+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~ 32 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 32 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 377889999999999999999999999854
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.1e-05 Score=71.08 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.++-++|.|||||||||+|+.||+.++..++..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~ 37 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 37 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeech
Confidence 355678899999999999999999998876543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=97.17 E-value=0.00084 Score=69.58 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----------------cchhHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----------------YGESEQALHEVFDSA 384 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----------------~ge~e~~i~~vf~~a 384 (957)
-|++.++-+.++||+|||||++|..++... |..+++++...-+... ....|+.+..+-...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~ 131 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 131 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHH
Confidence 367788889999999999999999887544 6667777764322211 112333332222223
Q ss_pred hccCCeEEEEcCccccccCCcCCCc------hHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 385 SQSAPAVVFIDELDAIAPARKDGGE------ELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 385 ~~~~p~IL~IDEiD~l~~~~~~~~~------~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
....+.+|++|=+.++.++.+-.+. ....+++..++..+..+....++.+|++.+-
T Consensus 132 ~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv 193 (268)
T d1xp8a1 132 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 193 (268)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred hcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEE
Confidence 3445889999999998865432211 1244556666666666666677787777543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.17 E-value=0.00013 Score=69.81 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
.+..|+|.||||+||||+|+.||..++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4556999999999999999999999865
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00076 Score=69.75 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=67.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc----------------ccchhHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ----------------NYGESEQALHEVFDSA 384 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~----------------~~ge~e~~i~~vf~~a 384 (957)
-|++.+.-+.|+||||+|||++|-.++... +...++++...-+.. .....|..+..+-...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~ 128 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 128 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHH
Confidence 367888899999999999999998877543 566777775432111 1112333332222223
Q ss_pred hccCCeEEEEcCccccccCCc---CCC---chHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 385 SQSAPAVVFIDELDAIAPARK---DGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 385 ~~~~p~IL~IDEiD~l~~~~~---~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
....+.++++|-+.++.++.. +.. .....+.+..++..+..+....++.+|++..
T Consensus 129 ~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQ 189 (263)
T d1u94a1 129 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 189 (263)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred hcCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEE
Confidence 345678999999988875321 111 1112334445555555544455667776654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.13 E-value=0.00012 Score=69.74 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+-|+|.||||+||||+|++||++++.+++.+..
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~ 36 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence 458899999999999999999999998877653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.13 E-value=0.00012 Score=69.52 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+-|+|+|||||||||+|+.||..++..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 35889999999999999999999887644
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0001 Score=70.70 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=22.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l 353 (957)
++|+|+||||||||||++.++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999999876
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00065 Score=70.30 Aligned_cols=121 Identities=22% Similarity=0.269 Sum_probs=69.6
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------cccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------WVGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------~vg~~~~~ir~~f~~A~ 736 (957)
|++...-+.|+||||+|||++|-.++... +...+.++...-+.. .....++.+..+-...+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~ 129 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 129 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence 45555568999999999999998886554 566677766433221 01112333333323344
Q ss_pred hCCCeEEEEeCCchhhhhc---CCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIR---GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r---~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
...++++++|=+.++.+.. ... ........+.++.++..+.......++.+|++.+-...
T Consensus 130 ~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~ 193 (263)
T d1u94a1 130 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 193 (263)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred cCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEEec
Confidence 5778899999998886421 111 11123334566777776666655557777776654433
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00013 Score=69.58 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=27.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+-++|.|||||||||+|++||+.++.+++..
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~~l~~~~~~~ 37 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 37 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeech
Confidence 3378899999999999999999999887653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.06 E-value=0.00013 Score=69.36 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.1
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
-++|.|||||||||+|+.||+.++..++
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3889999999999999999999987654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.05 E-value=0.00014 Score=69.52 Aligned_cols=27 Identities=41% Similarity=0.519 Sum_probs=24.2
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
+..|+|.||||+||||+|+.||..++.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 445999999999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.03 E-value=0.0002 Score=70.03 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
++-.|+|.|||||||||+|+.||..+|..++ +..+++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i--~~gdll 38 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL--ATGDML 38 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 4557889999999999999999999987654 444554
|
| >d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cdc48 domain 2-like superfamily: Cdc48 domain 2-like family: Cdc48 domain 2-like domain: C-terminal domain of VAT-N, VAT-Nc species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.02 E-value=0.00028 Score=61.08 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=47.7
Q ss_pred HHHHHHhhccCCcccCCCEEEEeecC----eeeEEEEEeecCCCCcCccCCCCccccccccCCCC-cEEEcCCceEEEcC
Q 002169 189 LQTCAASWLYSRSLLCGNLVAVPMLS----EISIFLVIGANKLPADLTNERSQPQVTESMDHESN-AFVINHETKVYLYP 263 (957)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~T~v~~~~ 263 (957)
....++++|.||||.+||.|+++.++ ..+.|.|.+++|. + +++|+++|+|.+..
T Consensus 25 ~~~ylk~~L~grPV~~GD~i~v~~~~~~g~~~i~F~Vv~t~P~---------------------g~~ViIt~~TeI~i~~ 83 (94)
T d1cz5a2 25 IEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPS---------------------KVPVEIGEETKIEIRE 83 (94)
T ss_dssp HHHHHHHHHSSCEECTTCEECCSSCCCSSCCCCSEEEEEESSS---------------------SSCEECCTTCEEEECS
T ss_pred HHHHHHHHHcCCCCcCCCEEEEeeccccCCceEeEEEEEEeCC---------------------CCeEEECCCeEEEEec
Confidence 46778999999999999999998876 5799999999996 5 58999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.96 E-value=0.00013 Score=71.34 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|..|+|.|||||||||+|+.||..++.+++.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is 33 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 33 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 4569999999999999999999999888754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00015 Score=69.52 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=22.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
++|+|+|||||||||++++++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 679999999999999999999876
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.95 E-value=0.0012 Score=68.39 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=74.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------cccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------WVGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------~vg~~~~~ir~~f~~A~ 736 (957)
|++..+-..++||+|||||++|-.++... +...+.++...-+.. -....++.+..+-...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~ 132 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 132 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHh
Confidence 34455558899999999999999887554 566777776543321 01123333333322334
Q ss_pred hCCCeEEEEeCCchhhhhcCCCC----CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRGKES----DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~~~~----~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
...+.++++|=+.++.+...-.+ .......+++..+++.+.......++.+|++.+-...
T Consensus 133 ~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~ 196 (268)
T d1xp8a1 133 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREK 196 (268)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---
T ss_pred cCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeec
Confidence 45688999999999875332211 1122356777888888777766778888777654444
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.95 E-value=0.00017 Score=70.63 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
|..|+|.|||||||||+|+.||..+|..++ +..+++.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~i--s~~~~~~ 39 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLLR 39 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEE--ehhHHHH
Confidence 557999999999999999999999988654 4444443
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.95 E-value=0.00022 Score=69.81 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=26.0
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.++|+||||+||||+|+.||..+|..++.
T Consensus 5 riil~G~pGSGKsT~a~~La~~~g~~~i~ 33 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAKNFCVCHLA 33 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47889999999999999999999887755
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.95 E-value=0.00019 Score=70.45 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=28.2
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..|.-|+|+||||+||||+|+.||..+|...+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~ 36 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 345568999999999999999999999876654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=0.00018 Score=68.62 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
.|..|+|+|+||+||||+|++||..++.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3556889999999999999999998854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=8.8e-05 Score=70.98 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=22.0
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
|+|.|+||+||||+|++||..++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999998854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.94 E-value=0.00026 Score=69.43 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.|.-|+|.||||+||||+|+.||..+|...+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i 35 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 4567899999999999999999999987544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.93 E-value=0.00024 Score=68.57 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
.|+|.||||+||||+|+.||..+|..++. ..+++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~--~~~ll~ 36 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS--TGDMFR 36 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceec--hhHHHH
Confidence 48899999999999999999999887654 345544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.93 E-value=0.00088 Score=67.62 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------------c------ccch
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------------W------VGES 724 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------------~------vg~~ 724 (957)
|+++..-++++||||+|||++|..+|... +.+.+.+...+-... + ....
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 101 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence 46666679999999999999999998765 444555543221000 0 0111
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
...+..+........|.++++|-++.+.
T Consensus 102 ~~~~~~i~~~i~~~~~~~vviDs~~~~~ 129 (242)
T d1tf7a2 102 EDHLQIIKSEINDFKPARIAIDSLSALA 129 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhcCCceeeeecchhhh
Confidence 2233455556677889999999998875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.93 E-value=0.0002 Score=69.14 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=26.8
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.|+|.||||+||||+|+.||..++..++..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~ 31 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence 378999999999999999999998887653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.002 Score=66.57 Aligned_cols=115 Identities=25% Similarity=0.355 Sum_probs=69.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEEeccccccc----------------ccchhHHHHHHHHHH-
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTVNGPEVVSQ----------------NYGESEQALHEVFDS- 383 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~---l~~~~i~i~~~~l~~~----------------~~ge~e~~i~~vf~~- 383 (957)
-|++.++-+.|+||||||||++|-.++.. .+...++|+...-++. .....|+.+ ++.+.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~-~~~~~l 133 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQAL-EIADML 133 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH-HHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHH-HHHHHH
Confidence 47888999999999999999998766643 3667778876432211 011222222 22222
Q ss_pred HhccCCeEEEEcCccccccCCcCCC----c--hHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 384 ASQSAPAVVFIDELDAIAPARKDGG----E--ELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 384 a~~~~p~IL~IDEiD~l~~~~~~~~----~--~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
.....+++|++|-+.++.++.+-.. . ....+.+..++..+..+....++.+|++..
T Consensus 134 ~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQ 195 (269)
T d1mo6a1 134 IRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195 (269)
T ss_dssp HHTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HhcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhhe
Confidence 2345578999999999886322110 0 122355555666565555556777777753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.0017 Score=67.11 Aligned_cols=121 Identities=22% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH---hCCcEEEEeCCCcccc--------------c--ccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSK--------------W--VGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~---~~~~~i~v~~~~l~~~--------------~--vg~~~~~ir~~f~~A~ 736 (957)
|++..+-..|+||||||||++|-.++.. .+...+.++...-++. + ....++.+..+-...+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~ 135 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 5566666899999999999998766544 3666677776543321 0 1112222222222234
Q ss_pred hCCCeEEEEeCCchhhhhcCC---CC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRGK---ES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~~---~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
...+++|++|=+.++.+...- .+ .......+.+..++..+.......++.+|++.+-...
T Consensus 136 ~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~ 199 (269)
T d1mo6a1 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDK 199 (269)
T ss_dssp TTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred cCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhheeecc
Confidence 566889999999998753221 11 1122344667777777776655667788777543333
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.84 E-value=0.0025 Score=63.21 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.++-++|+||+|+||||.+--+|..+ |..+..+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~ 42 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 42 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 35678899999999999877777654 555555554
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.81 E-value=0.00099 Score=73.20 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=67.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCc-ceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCC-C
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTG-ILMFGPPGCSKTLMARAVASEAG---LNFLAVKGP-E 715 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~g-iLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~-~ 715 (957)
+...+++++-.+...+.+++++.. +.| +|+.||+|+||||+..++..+++ .+++.+..+ +
T Consensus 133 ~~~~l~~LG~~~~~~~~l~~l~~~---------------~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE 197 (401)
T d1p9ra_ 133 TRLDLHSLGMTAHNHDNFRRLIKR---------------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 197 (401)
T ss_dssp TCCCGGGSCCCHHHHHHHHHHHTS---------------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred cchhhhhhcccHHHHHHHHHHHhh---------------hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc
Confidence 445678887777777777766642 344 88999999999999999988763 467777654 2
Q ss_pred cccc------cccchHHHHHHHHHHHHhCCCeEEEEeCCch
Q 002169 716 LFSK------WVGESEKAVRSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 716 l~~~------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~ 750 (957)
..-. +.+.........++.+....|+||++.|+..
T Consensus 198 ~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd 238 (401)
T d1p9ra_ 198 FDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 238 (401)
T ss_dssp SCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred cccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence 2111 1122233457778888899999999999974
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.00034 Score=68.73 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=25.7
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|+|.||||+||||+|+.||..+|..++.
T Consensus 11 I~i~GppGSGKsT~a~~La~~~g~~~is 38 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLS 38 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 8899999999999999999999887765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.80 E-value=0.00037 Score=67.52 Aligned_cols=30 Identities=40% Similarity=0.598 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.|||||||||+|+.||..+|...+.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~ 31 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 588999999999999999999998876543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0026 Score=63.21 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=45.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc--------------------ccchhHHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ--------------------NYGESEQALHEVFDS 383 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~--------------------~~ge~e~~i~~vf~~ 383 (957)
..|.-++|+||+|+||||.+--+|..+ +..+..+.+..+... ...+....++...+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 345668899999999999887778654 556655554321111 112334455566666
Q ss_pred HhccCCeEEEEcCc
Q 002169 384 ASQSAPAVVFIDEL 397 (957)
Q Consensus 384 a~~~~p~IL~IDEi 397 (957)
+....-+++|||=.
T Consensus 87 a~~~~~d~ilIDTa 100 (211)
T d2qy9a2 87 AKARNIDVLIADTA 100 (211)
T ss_dssp HHHTTCSEEEECCC
T ss_pred HHHcCCCEEEeccC
Confidence 66566679999964
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00063 Score=65.74 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDEL 397 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEi 397 (957)
.+.|.-|+++|+|||||||+|+.++...+.. .++..++.. ...+...++.+.... ..+++|..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~--~i~~D~~~~------~~~~~~~~~~~l~~g-~~vIiD~t 73 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTLGS------WQRCVSSCQAALRQG-KRVVIDNT 73 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGGTCE--EEEHHHHCS------HHHHHHHHHHHHHTT-CCEEEESC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCCE--EEchHHHHH------HHHHHHHHHHHHHCC-CCceeeCc
Confidence 3557788999999999999999998877754 444434322 123333444443333 24666753
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.76 E-value=0.00034 Score=67.77 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=26.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.|+|.|||||||||+|+.||..++...+.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~ 31 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 478999999999999999999998887653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.75 E-value=0.00034 Score=67.90 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=26.2
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|+|.||||+||||+|+.||..++.+++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g~~~is 30 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYGTPHIS 30 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCceee
Confidence 7899999999999999999999988775
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.75 E-value=0.00033 Score=68.82 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
.++.|+|.|||||||||+|+.||..+|... ++..+++..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~--is~g~llr~ 45 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLLRA 45 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHTCCEE--EEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCee--EeccHHHHH
Confidence 466799999999999999999999988754 455555543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=96.73 E-value=0.0017 Score=59.56 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~ 363 (957)
.+..+|.+|+|+|||+++-.++...+..++.+...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~ 42 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 42 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcCh
Confidence 45678999999999999877777777766655543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.73 E-value=0.00044 Score=67.07 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.|||||||||+|+.||..+|..++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is 30 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence 48899999999999999999999887654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.73 E-value=0.00035 Score=68.62 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=26.1
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.|+|+||||+||||+|+.||..++..++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g~~~is 36 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFELKHLS 36 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999877754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00037 Score=67.62 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.5
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.|+|.||||+||||+|+.||..++.+++..
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence 478999999999999999999998876653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.00047 Score=66.81 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
.|+|.||||+||||+|+.||..+|... ++..+++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~--i~~~d~~~ 38 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAH--LATGDMLR 38 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--Eeccccce
Confidence 588999999999999999999998764 44445543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.00049 Score=67.47 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
..-|+|.||||+||||+|+.||..+|..++ +..+++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~i--s~gdl~ 43 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL--SAGDLL 43 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE--EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ehhHHH
Confidence 345778899999999999999999988554 444443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00047 Score=67.42 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
|.-|+|.||||+||||+|+.||..+|... ++..+++
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g~~~--i~~g~ll 36 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELL 36 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCce--EcHHHHH
Confidence 34688999999999999999999998755 4444443
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.68 E-value=0.00052 Score=67.35 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=28.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
-.|+|.||||+||||+|+.||..+|..+ ++..+++.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~~~--is~gdllr 42 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLLR 42 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 3688899999999999999999998755 45445543
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=96.67 E-value=0.0013 Score=64.63 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
+.+..+.++|||||+||||++|.+|++-++...+.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis 83 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 83 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence 45555669999999999999999999998755443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.67 E-value=0.00039 Score=68.26 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
++-|+|.||||+||||+|+.||..+|.+++.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~is 38 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 38 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeeEe
Confidence 4568999999999999999999999877654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.65 E-value=0.0037 Score=68.50 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=62.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEecc-ccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGP-EVVSQ 368 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~-~l~~~ 368 (957)
.+++++|=...+.+.+++++..+ ..-||+.||+|+||||++.++..++. .+++.+--+ +..-.
T Consensus 135 ~~l~~LG~~~~~~~~l~~l~~~~-------------~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~ 201 (401)
T d1p9ra_ 135 LDLHSLGMTAHNHDNFRRLIKRP-------------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDID 201 (401)
T ss_dssp CCGGGSCCCHHHHHHHHHHHTSS-------------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCS
T ss_pred hhhhhhcccHHHHHHHHHHHhhh-------------hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccC
Confidence 45778877777888888774222 34577889999999999999988773 345554422 11110
Q ss_pred ------ccchhHHHHHHHHHHHhccCCeEEEEcCcc
Q 002169 369 ------NYGESEQALHEVFDSASQSAPAVVFIDELD 398 (957)
Q Consensus 369 ------~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD 398 (957)
..+.........+..+....|+||+|.|+-
T Consensus 202 ~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiR 237 (401)
T d1p9ra_ 202 GIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 237 (401)
T ss_dssp SSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcC
Confidence 011222235667778889999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.00042 Score=67.80 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.-|+|.||||+||||.|+.||..+|...+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i~ 31 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 31 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCceEc
Confidence 347899999999999999999999877653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.00024 Score=69.17 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
.+.-|+|+|+||+||||+|++||..++..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~ 46 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCH 46 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35567799999999999999999988543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.00045 Score=68.60 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.8
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
-|.+.||||+||+|+|+.||..+|.++++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iS 33 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLD 33 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence 46777999999999999999999988754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.61 E-value=0.0047 Score=61.18 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=62.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHH----HcCCcEEEEeccccccc-------------------------------
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAH----DSGVNLFTVNGPEVVSQ------------------------------- 368 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~----~l~~~~i~i~~~~l~~~------------------------------- 368 (957)
-|++++.-++|+|+||+|||++|..+|. ..+..++.++...-...
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPE 100 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchh
Confidence 4789999999999999999999965542 22445555543210000
Q ss_pred -----ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 369 -----NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 369 -----~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
........+..+-..+....|.++++|.++.+...... .....+....+...+. ..++.++.+.+...
T Consensus 101 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 101 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA--SSVVRRELFRLVARLK----QIGATTVMTTERIE 173 (242)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCC--HHHHHHHHHHHHHHHH----HHTCEEEEEEECSS
T ss_pred hhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhccC--hhHHHHHHHHHHHHHH----hcCCceEEeecccc
Confidence 00112223334444455667889999999887643221 2222233333443333 23455565554433
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00059 Score=65.88 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.||||+||||+|+.||..++..++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~ 30 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 47899999999999999999999876553
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00047 Score=66.61 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=26.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.|+|.||||+||||+|+.||..++..++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~ 30 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 37899999999999999999999988765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.57 E-value=0.0026 Score=65.50 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=31.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~----l~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||+++..+|.. .|.++..++.
T Consensus 30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 47888999999999999999998877743 3667766654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0052 Score=62.14 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHH-----hCC--------------cEEEEeCCCcccccccch---HHHHHHHHHHHHhC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE-----AGL--------------NFLAVKGPELFSKWVGES---EKAVRSLFAKARAN 738 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~-----~~~--------------~~i~v~~~~l~~~~vg~~---~~~ir~~f~~A~~~ 738 (957)
+.++|.||+.+|||++.|++|-. .|. =|..+...+-+..-...+ -+.++.++..+.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~-- 119 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT-- 119 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC--
T ss_pred eEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcc--
Confidence 45899999999999999999743 221 122233333222111112 234455666554
Q ss_pred CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 739 ~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
..+++++||+-+.. .......+..+++..+. ...+..+|+|||..+...
T Consensus 120 ~~sLvliDE~~~gT--------~~~eg~~l~~a~l~~l~---~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 120 EYSLVLMDEIGRGT--------STYDGLSLAWACAENLA---NKIKALTLFATHYFELTQ 168 (234)
T ss_dssp TTEEEEEESCCCCS--------SSSHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred cccEEeecccccCC--------ChhhhhHHHHHhhhhhh---ccccceEEEecchHHHhh
Confidence 35799999997432 11223344445555443 233567889999776543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.54 E-value=0.0048 Score=61.30 Aligned_cols=36 Identities=28% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
..|.-++|+||+|+||||.+--+|..+ +..+..+.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~ 48 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA 48 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence 346668899999999999877777544 455544544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.54 E-value=0.0031 Score=62.55 Aligned_cols=34 Identities=29% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
++-++|+||+|+||||.+--||..+ +..+..+++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~ 46 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 46 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 4446789999999999888787654 556655554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.53 E-value=0.00055 Score=68.25 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=25.0
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|.+-||||+||||+|+.||.+++.+++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~is 33 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTYLD 33 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence 4566999999999999999999998765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00017 Score=70.30 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.9
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
|+|+|+||+||||+|++||..++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 778999999999999999998854
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0024 Score=65.53 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
|+.++.-.+|+|+||+|||+++-.+|..
T Consensus 25 G~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 25 NMVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456788899999999999999888754
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=96.51 E-value=0.002 Score=58.99 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=24.9
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+..+|.+|+|+|||+++-.++.+.+...+.+-.
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P 41 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 41 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence 447999999999999887666666666555544
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.0007 Score=67.17 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
-|.+.|||||||+|+|+.||+.+|.++ ++..+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~--iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHHH
Confidence 567779999999999999999998865 4444543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.47 E-value=0.0017 Score=63.73 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
|.-|+++|.||+||||+|++||+.+ +.....+++
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~ 38 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 38 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence 3458899999999999999999876 445555554
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.0019 Score=64.66 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=49.3
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCccccc--------------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSKW-------------------------- 720 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~~-------------------------- 720 (957)
|+++..-++|+||||||||++|-.+|... +.+.+.+....-....
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 109 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEECC
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEecc
Confidence 46677779999999999999999887542 3455665543321110
Q ss_pred -ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 721 -VGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 721 -vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
............+......+.++++|-+..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~ 143 (251)
T d1szpa2 110 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143 (251)
T ss_dssp STTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGS
T ss_pred chhHHHHHHHHHHHHhhccccceeeehhhhhhhh
Confidence 000112234445556667788999999877653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.43 E-value=0.0009 Score=62.24 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=25.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
+-|+|+||||+||||+|+.++.... .+..++..++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence 3478899999999999999876543 3555555443
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.0031 Score=62.93 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=25.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~ 351 (957)
-|+++++-++|+||||||||++|..+|.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.01 Score=58.89 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=44.9
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------cc----cchHHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------WV----GESEKAVRSLFAK 734 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------~v----g~~~~~ir~~f~~ 734 (957)
..|.-++|+||+|+||||.+--||..+ +.....+....+... +. .+....++...+.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 335558899999999988655556543 455544544332110 11 1223445666666
Q ss_pred HHhCCCeEEEEeCCchh
Q 002169 735 ARANAPSIIFFDEIDGL 751 (957)
Q Consensus 735 A~~~~p~ILfiDEid~l 751 (957)
++...-.++|||=+.+.
T Consensus 87 a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRL 103 (211)
T ss_dssp HHHTTCSEEEECCCCCG
T ss_pred HHHcCCCEEEeccCCCc
Confidence 77666779999976644
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.36 E-value=0.00094 Score=66.48 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=23.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 332 VLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
|.+-||||+||||+|+.||..+|.+++
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~i 32 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTYL 32 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 456699999999999999999988654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.33 E-value=0.0029 Score=67.24 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeC-CCccc-------ccccchHHHHHHHHHHHHhCCCeEEEEeCCc
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKG-PELFS-------KWVGESEKAVRSLFAKARANAPSIIFFDEID 749 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~-~~l~~-------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid 749 (957)
.+++++.||+|+||||+.++++.... ..++.+.. .++.- ...+..+-....++..+..+.|..|++.|+-
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEiR 245 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 245 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCCC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCccC
Confidence 46799999999999999999998874 34555532 33211 1112223345778888999999999999985
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.007 Score=61.15 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH-----cCCc--------------EEEEeccccccc---ccchhHHHHHHHHHHHhc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD-----SGVN--------------LFTVNGPEVVSQ---NYGESEQALHEVFDSASQ 386 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~-----l~~~--------------~i~i~~~~l~~~---~~ge~e~~i~~vf~~a~~ 386 (957)
.+.++|+||+.+|||+++|.+|-. +|.. +..+...+-+.. .+..--..++.+++.+.
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~- 119 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT- 119 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcc-
Confidence 467889999999999999998842 2321 122322221111 11111235666777654
Q ss_pred cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 387 ~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
..++++|||+-.-. .. .....+...++..+ ....+..+|+||+..+
T Consensus 120 -~~sLvliDE~~~gT-----~~-~eg~~l~~a~l~~l---~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 120 -EYSLVLMDEIGRGT-----ST-YDGLSLAWACAENL---ANKIKALTLFATHYFE 165 (234)
T ss_dssp -TTEEEEEESCCCCS-----SS-SHHHHHHHHHHHHH---HHTTCCEEEEECSCGG
T ss_pred -cccEEeecccccCC-----Ch-hhhhHHHHHhhhhh---hccccceEEEecchHH
Confidence 35799999974321 11 11223333333333 2234567888887654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.0049 Score=61.35 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.+|.-++|+||+|+||||.+--+|..+ +..+..+.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~ 47 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 47 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence 345568899999999999877777554 445544443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.25 E-value=0.0008 Score=62.63 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=23.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
|+|.||||+||||+|+.|+.+.. ++..++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~~~~-~~~~~~~d 35 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAKNP-GFYNINRD 35 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHHST-TEEEECHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-CCEEechH
Confidence 78899999999999999876543 34444443
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.24 E-value=0.00092 Score=63.89 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
+-|+|.|+|||||||+++.|+..++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999988754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.23 E-value=0.0011 Score=63.91 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.8
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
.|.-+++.|+|||||||+|+.++...+..++
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~~i 43 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 43 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 4455899999999999999999988776544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.20 E-value=0.012 Score=58.30 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=22.0
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeC
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKG 713 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~ 713 (957)
++|+||+|+||||.+--||..+ +.....+..
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~ 46 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 46 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 7889999999988766666543 455544444
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.14 E-value=0.0059 Score=60.39 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~ 702 (957)
|+++..-++|+|+||+|||++|-.+|.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 466777799999999999999976653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.11 E-value=0.0021 Score=62.90 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=25.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhC---CcEEEEeC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAG---LNFLAVKG 713 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~ 713 (957)
=|+++|.||+||||+|++||+.++ .+...++.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~ 38 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 38 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence 378999999999999999998764 44444444
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.11 E-value=0.001 Score=70.94 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEe-cccccc-------cccchhHHHHHHHHHHHhccCCeEEEEcCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVN-GPEVVS-------QNYGESEQALHEVFDSASQSAPAVVFIDEL 397 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~-~~~l~~-------~~~ge~e~~i~~vf~~a~~~~p~IL~IDEi 397 (957)
++++|+.||+|+||||++++++..++. .++.+- ..++.- ...+..+-....++..+....|+.|++.|+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi 244 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 244 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence 567999999999999999999988743 344432 222211 011222234567788888999999999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.07 E-value=0.0073 Score=59.79 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------cccc----hHHHHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------WVGE----SEKAVRSLFAKAR 736 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------~vg~----~~~~ir~~f~~A~ 736 (957)
++-++|+||+|+||||.+-=||..+ +....-+........ +... ....++.....++
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~ 85 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMK 85 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHHH
Confidence 4458899999999988655556543 445444443322110 1111 2223344444444
Q ss_pred hCCCeEEEEeCCchh
Q 002169 737 ANAPSIIFFDEIDGL 751 (957)
Q Consensus 737 ~~~p~ILfiDEid~l 751 (957)
...-.+||||=+.+.
T Consensus 86 ~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 86 ARGYDLLFVDTAGRL 100 (207)
T ss_dssp HHTCSEEEECCCCCC
T ss_pred HCCCCEEEcCccccc
Confidence 445569999976543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.04 E-value=0.0058 Score=55.18 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.8
Q ss_pred CCCCCeEEEEcCCCChHHHHH
Q 002169 326 LRPTKGVLLHGPPGTGKTSLA 346 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLa 346 (957)
++.++.++|++|+|+|||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 356889999999999999665
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.04 E-value=0.0087 Score=59.97 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred cceeeCCCCChhhHHHHHHHHH-----hCC----c----------EEEEeCCCcccccccch---HHHHHHHHHHHHhCC
Q 002169 682 GILMFGPPGCSKTLMARAVASE-----AGL----N----------FLAVKGPELFSKWVGES---EKAVRSLFAKARANA 739 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~-----~~~----~----------~i~v~~~~l~~~~vg~~---~~~ir~~f~~A~~~~ 739 (957)
.++|.||+..|||++.|.++-. .|. . |..+...+-...-...+ -+.++.++..+ ..
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~--~~ 114 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEA--TE 114 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHC--CT
T ss_pred EEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccC--CC
Confidence 4899999999999999998743 221 1 12222222221111112 23445556554 34
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.+++++||+-+.... .....+..+++..|... +..++++||..+.
T Consensus 115 ~sLvliDE~~~gT~~--------~eg~ala~aile~L~~~----~~~~i~tTH~~eL 159 (224)
T d1ewqa2 115 NSLVLLDEVGRGTSS--------LDGVAIATAVAEALHER----RAYTLFATHYFEL 159 (224)
T ss_dssp TEEEEEESTTTTSCH--------HHHHHHHHHHHHHHHHH----TCEEEEECCCHHH
T ss_pred CcEEeecccccCcch--------hhhcchHHHHHHHHhhc----CcceEEeeechhh
Confidence 579999999754221 22233444555555422 4568889987643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.99 E-value=0.019 Score=56.87 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------c----ccchHHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------W----VGESEKAVRSLFAK 734 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------~----vg~~~~~ir~~f~~ 734 (957)
+.|.-++|+||+|+||||.+--||..+ +.....+........ + ..+....++.....
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 345558899999999988655555443 444444443322110 1 11122333444555
Q ss_pred HHhCCCeEEEEeCCc
Q 002169 735 ARANAPSIIFFDEID 749 (957)
Q Consensus 735 A~~~~p~ILfiDEid 749 (957)
++...-.++|||=+.
T Consensus 90 ~~~~~~d~IlIDTaG 104 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAG 104 (211)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred hhccCCceEEEecCC
Confidence 555666799999554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0017 Score=61.25 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=23.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDS---GVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l---~~~~i~i 360 (957)
-+.|+|+||||||||++.+++.+ |..+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47789999999999999999875 4444433
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.89 E-value=0.0052 Score=63.20 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=28.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH----hCCcEEEEeC
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKG 713 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~----~~~~~i~v~~ 713 (957)
|+.+..-++|.|+||+|||+++..+|.. .+.+...++.
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 5666666999999999999998888753 2566665554
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0092 Score=59.74 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
|+++..-++|+||||||||++|..+|..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5666667999999999999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.72 E-value=0.0029 Score=62.81 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEV 365 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l 365 (957)
..+.-|.|+|.||+||||+|++|+..+ +.+++.+++..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 456678899999999999999999755 567777877554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0029 Score=61.46 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
++|+|+||+|+|||||++.|+.+....+
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 5699999999999999999999876544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.027 Score=55.78 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=18.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHH
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
+|.-++|+||+|+||||.+--||..
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4445899999999998865555544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.0033 Score=61.38 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=24.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
++|+|.||+|+|||||++.|+...+..+
T Consensus 1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~ 28 (190)
T d1lvga_ 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIF 28 (190)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCce
Confidence 3589999999999999999999887655
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=95.68 E-value=0.0031 Score=57.08 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=16.9
Q ss_pred CCCCcceeeCCCCChhhHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMAR 698 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAk 698 (957)
+..+.++|++|+|+|||..+-
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~ 25 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFL 25 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHH
T ss_pred HcCCcEEEEcCCCCChhHHHH
Confidence 345679999999999997663
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.64 E-value=0.0019 Score=61.60 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
+-|+|.||||+||||+++.|+..++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999988743
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0023 Score=60.27 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=23.9
Q ss_pred cceeeCCCCChhhHHHHHHHHHh---CCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEA---GLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v 711 (957)
-+.|.|++|+|||||++.|++++ |.....+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 37899999999999999999875 4444433
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0051 Score=66.29 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLC 349 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaral 349 (957)
.+.++|.||||||||+++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 356889999999999887543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0094 Score=60.90 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
+.+..-.+|+|+||+|||+++-.+|..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 334445889999999999999888764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.50 E-value=0.0024 Score=61.16 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
-++|.|+||+||||+++.|+..++.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998854
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.38 E-value=0.0082 Score=61.84 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCch
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~ 750 (957)
+....+.|+||++||||+++.+|+..+|.. ..++... +. |..+......++++||++.
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~-~~~~~~~--~~------------f~l~~l~~k~~~~~~e~~~ 159 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN--EN------------FPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC--SS------------CTTGGGSSCSEEEECSCCE
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHhcch-hhccccC--CC------------ccccccCCCEEEEEeCCCc
Confidence 344558999999999999999999998653 2222111 11 2223333445999999873
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.30 E-value=0.018 Score=57.52 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
|+++..-++|+||||||||++|-.+|...
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46666669999999999999999887653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0043 Score=60.17 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=26.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
-|+.++.-++|+||||+|||++|..+|...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999888654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.22 E-value=0.031 Score=55.73 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=52.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH-----cCCc----E----------EEEecccccccccc---hhHHHHHHHHHHHhcc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHD-----SGVN----L----------FTVNGPEVVSQNYG---ESEQALHEVFDSASQS 387 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~-----l~~~----~----------i~i~~~~l~~~~~g---e~e~~i~~vf~~a~~~ 387 (957)
+.++|+||+..|||+++|.++-. .|.. . ..+...+-+..... .--..++.+++.+ .
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~--~ 113 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEA--T 113 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHC--C
T ss_pred cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccC--C
Confidence 36889999999999999988732 2321 1 12222221111111 1123456666654 3
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
..++++|||+-.=. .......+...+++.+.. . +..++++|+..
T Consensus 114 ~~sLvliDE~~~gT------~~~eg~ala~aile~L~~---~-~~~~i~tTH~~ 157 (224)
T d1ewqa2 114 ENSLVLLDEVGRGT------SSLDGVAIATAVAEALHE---R-RAYTLFATHYF 157 (224)
T ss_dssp TTEEEEEESTTTTS------CHHHHHHHHHHHHHHHHH---H-TCEEEEECCCH
T ss_pred CCcEEeecccccCc------chhhhcchHHHHHHHHhh---c-CcceEEeeech
Confidence 45799999973211 112223334444444433 2 34567777654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.20 E-value=0.055 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|.||+|||+|++++.+.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999854
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.15 E-value=0.024 Score=58.20 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=26.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
.+....++|+||++||||+++.+++..+|..
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~ 131 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence 4556778999999999999999999999763
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.07 E-value=0.0059 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
|+-|+|.||||+|||||++.+..+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56789999999999999999998864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.99 E-value=0.0033 Score=60.59 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcC
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~ 354 (957)
-|.|.||+|+||||||+.|+..++
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 355889999999999999998764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.97 E-value=0.0068 Score=59.00 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.5
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
.|+|+||+|+||||+++.|+.+.+..|.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~ 29 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFG 29 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCcee
Confidence 4889999999999999999998876554
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.91 E-value=0.0029 Score=60.51 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.6
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
++|.|+||+||||+++.||..++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.0073 Score=60.51 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=26.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
-|++++.-++|+||||||||++|..+|..
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.007 Score=58.63 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNF 708 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~ 708 (957)
+.|+|+||+|+|||||++.|+.+....|
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 3489999999999999999999876544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.72 E-value=0.0082 Score=59.46 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL 716 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l 716 (957)
.+.-|.|.|.||+||||+|++|+..+ +.+++.+++..+
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 34448999999999999999999765 667888777554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.035 Score=59.47 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred CcceeeCCCCChhhHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAV 700 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkai 700 (957)
+-.++.||||||||+++..+
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHH
Confidence 34889999999999887544
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.48 E-value=0.0072 Score=60.66 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=26.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
-|++++.-++|+||||||||+++-.+|...
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999999887543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.047 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.|+|.|+||+|||||.++|.+.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999743
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.22 E-value=0.0067 Score=58.30 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.6
Q ss_pred ceeeCCCCChhhHHHHHHHHHhC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
|.+.||+|+||||+|+.|+..++
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 66899999999999999998764
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=94.20 E-value=0.011 Score=57.70 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+++....++|+|||+||||++|.+|++.++-.++
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi 82 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 82 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence 6677889999999999999999999999876543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.16 E-value=0.038 Score=54.55 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+++..-++|+||||+|||++|-.+|...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5556669999999999999999998654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.013 Score=57.63 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
-|.|.||+|+||||+|+.|+..++.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 4668899999999999999998865
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.075 Score=49.00 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|+||+|||||++++.+.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999743
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.018 Score=55.33 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
.+.|+|.||+|+|||||++.|..+....|
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 31 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRF 31 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence 46799999999999999999997764433
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.01 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
|+++..-++|+||||+|||++|-.+|...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56677779999999999999999998764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.87 E-value=0.021 Score=53.77 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
...++.-|+|.|+=|+||||++|.+++.+|..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 44566678999999999999999999999874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.16 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 002169 330 KGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~ 351 (957)
+.|+|.|+||+|||+|.+.+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999976
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.76 E-value=0.08 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.2
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|+||||||+|++.+...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.66 E-value=0.082 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~ 352 (957)
.-.|+|+|.||+|||||+..+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998753
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.60 E-value=0.018 Score=54.23 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=23.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCcEEEEe
Q 002169 332 VLLHGPPGTGKTSLARLCAHDS---GVNLFTVN 361 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l---~~~~i~i~ 361 (957)
+.++|++|+|||||+..++.++ |..+..+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5689999999999999998776 45554443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.49 E-value=0.04 Score=55.01 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.++.+++.+|+|+|||+.+-..+... +...+.+..
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P 94 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP 94 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence 36789999999999998766555332 445555443
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.015 Score=57.07 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
|.+.||+|+||||+|+.|+..++..
T Consensus 5 IgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 6689999999999999999988653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.38 E-value=0.015 Score=55.69 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.9
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
+-++|.||+|+||||+++.+..+..
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.30 E-value=0.017 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
|++++.-++|+|+||+|||++|..+|..+
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 58889999999999999999999998654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.23 E-value=0.026 Score=54.05 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.+.+|||.|+||+|||++|-.+... |..++.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~ 43 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA 43 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence 3789999999999999999988865 666543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.22 E-value=0.022 Score=56.00 Aligned_cols=32 Identities=28% Similarity=0.173 Sum_probs=26.1
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+.++.+|+|+|||.+|-+++.+.+.+.+.+-.
T Consensus 87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p 118 (206)
T d2fz4a1 87 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118 (206)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence 45788999999999999999888777665544
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.18 E-value=0.078 Score=51.35 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=17.6
Q ss_pred CCCeEEEEcCCCChHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARL 348 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLara 348 (957)
.++.+++.+|+|+|||+.+..
T Consensus 39 ~~~~~il~apTGsGKT~~a~l 59 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLLAEM 59 (202)
T ss_dssp TCSCEEEECSSHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHHHHH
Confidence 367899999999999988643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.18 E-value=0.029 Score=53.96 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
|--|.|+|++|+||||+|+.+. +.|.+++.
T Consensus 3 p~IIgitG~~gSGKstva~~l~-~~g~~~~~ 32 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR-SWGYPVLD 32 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 3446689999999999999994 57877653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.17 E-value=0.036 Score=52.11 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+++.-++|.|+=|+|||+++|.+++.++..
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 333348899999999999999999998764
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.17 E-value=0.049 Score=53.31 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=26.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
...+|.+|+|+|||.++-+++.+++.+.+.+..
T Consensus 86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p 118 (206)
T d2fz4a1 86 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118 (206)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence 356788999999999999999888877665554
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.025 Score=55.70 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
|+-++|.||+|+|||||.+.|.....
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56688999999999999999998865
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.05 E-value=0.033 Score=52.22 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=23.9
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEe
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVK 712 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~ 712 (957)
+.+.|++|+|||||++.|+.++ |.....+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik 36 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 36 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5699999999999999998875 45555554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.98 E-value=0.024 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|+||+|||||++.+...
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.15 Score=48.00 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.9
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
-|+|.|.+|+|||+|++++.+.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999864
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.89 E-value=0.018 Score=57.61 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=18.4
Q ss_pred CCcceeeCCCCChhhHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~ 702 (957)
.+.+++.+|+|+|||+++-..+-
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~ 80 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSL 80 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHH
T ss_pred CCCEEEEecCCChHHHHHHHHHH
Confidence 46799999999999987665543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.87 E-value=0.06 Score=52.22 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.4
Q ss_pred CCcceeeCCCCChhhHHHH
Q 002169 680 PTGILMFGPPGCSKTLMAR 698 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAk 698 (957)
.+.+++.+|+|+|||++|-
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 4579999999999999874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.19 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
+.|+|.|+||+|||+|.+++.+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999763
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.24 Score=47.41 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|+||+|||||..++.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.17 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|++|+|||+|++.+...
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.68 E-value=0.13 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.0
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.|+|+|+||+|||||+++|.+.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.16 Score=53.37 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=44.5
Q ss_pred cceeeCCCCChhhHHHHHHHHHh---C--CcEEEEeCCCccc----------------------------ccccchHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASEA---G--LNFLAVKGPELFS----------------------------KWVGESEKAV 728 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~---~--~~~i~v~~~~l~~----------------------------~~vg~~~~~i 728 (957)
.|-+.||||+|||||..+++..+ | ..++.++.+.-.+ ...|......
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~~~ 135 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRA 135 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchhhh
Confidence 48899999999999999998654 2 2345555432111 1233444556
Q ss_pred HHHHHHHHhCCCeEEEEeCCch
Q 002169 729 RSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~ 750 (957)
+..+........+++|++-+..
T Consensus 136 ~~~~~~~~~~g~d~iliEtvG~ 157 (327)
T d2p67a1 136 RELMLLCEAAGYDVVIVETVGV 157 (327)
T ss_dssp HHHHHHHHHTTCSEEEEEEECC
T ss_pred hHHHHHHHhcCCCeEEEeeccc
Confidence 6777777777778999987653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.56 E-value=0.12 Score=48.31 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 002169 330 KGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~ 351 (957)
-.|++.|+||+|||+|++.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999998854
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.48 E-value=0.19 Score=48.72 Aligned_cols=51 Identities=31% Similarity=0.291 Sum_probs=29.1
Q ss_pred cccccCChHHHHHHHHHH-HhchhhcHH-HHHhcCCCCCCcceeeCCCCChhhHH
Q 002169 644 KWEDVGGQREVKTQLMEA-VEWPQKHQE-AFKRIGTRPPTGILMFGPPGCSKTLM 696 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~-i~~~~~~~~-~~~~l~~~~~~giLL~GPpGtGKTtl 696 (957)
+|+++.-.+++.+.|.+. +..|..-+. .+.. +-..+.+++.+|+|+|||+.
T Consensus 2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~--il~g~dvi~~a~tGsGKTla 54 (206)
T d1s2ma1 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPV--AITGRDILARAKNGTGKTAA 54 (206)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSCHHHH
T ss_pred ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEEecCCcchhhhh
Confidence 577776667777766654 222211111 1100 11245799999999999953
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.054 Score=53.21 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEe
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVN 361 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~ 361 (957)
+.-|.|.|+.|+||||+++.|++.+ |.+++.+.
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 38 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 38 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4567777999999999999999876 56666554
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.33 E-value=0.026 Score=54.45 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.|..|.|.|+.|+||||+++.|++.++...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~ 38 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL 38 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3456788899999999999999998876443
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.076 Score=49.78 Aligned_cols=21 Identities=52% Similarity=0.858 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+.+
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~ 23 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGG 23 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhC
Confidence 378999999999999998874
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.16 E-value=0.042 Score=52.27 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
.+.+|||.|++|+|||++|-.+... |..+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~l 42 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR-GHRL 42 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence 4789999999999999999887765 5554
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.064 Score=55.98 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeCCCcc
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGPELF 717 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~~~l~ 717 (957)
|--|.+.|++|+||||+|+.|+..+. .....+...+++
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~ 122 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence 33477999999999999999998874 445666666553
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.09 E-value=0.19 Score=48.98 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=32.7
Q ss_pred ccccccCChHHHHHHHHHH-HhchhhcHH-HHHhcCCCCCCcceeeCCCCChhhHHHHHHH
Q 002169 643 VKWEDVGGQREVKTQLMEA-VEWPQKHQE-AFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~-i~~~~~~~~-~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA 701 (957)
.+|+|++-.+++.+.+.+. +..|..-+. .+.. -+.....+++..|+|+|||+.+-..+
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~~d~iv~a~TGsGKT~~~~l~~ 63 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPL-FLNDEYNIVAQARTGSGKTASFAIPL 63 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHHTCSEEEEECCSSSSHHHHHHHHH
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHcCCCCeeeechhcccccceeeccc
Confidence 3677776666666666543 222211111 1111 01123469999999999999776554
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.036 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.|.|.|+.|+||||+++.|++.+
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999876
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.06 E-value=0.19 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~ 352 (957)
.-.|+|.|.||+||||++.+|.++
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.04 E-value=0.051 Score=53.75 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHc--CCcEEEEe
Q 002169 332 VLLHGPPGTGKTSLARLCAHDS--GVNLFTVN 361 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l--~~~~i~i~ 361 (957)
|++.||+|+|||||++.+.+.+ +.....|+
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 6789999999999999998765 33455554
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.01 E-value=0.037 Score=53.01 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.+.+|||.||+|+|||++|-.+... |..++.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lva 44 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVG 44 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCceec
Confidence 4789999999999999999888754 665543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.92 E-value=0.038 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=22.4
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|.++|++|+||||+|+.+ .+.|.+++.
T Consensus 6 IgitG~~gSGKstva~~l-~~~g~~~~~ 32 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALL-RSWGYPVLD 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence 668999999999999999 457777653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.91 E-value=0.23 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.11 Score=54.08 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEecccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEV 365 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l 365 (957)
+.|--|.+.|++|+||||+|+.|+..+. ..+..++..++
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 3455667889999999999999998874 34555655444
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.78 E-value=0.11 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l 353 (957)
...|-++||||+|||||+..++..+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999998654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.046 Score=52.32 Aligned_cols=28 Identities=11% Similarity=0.351 Sum_probs=23.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNF 708 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~ 708 (957)
+.++|.||+|+|||||++.|..+....|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 31 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRF 31 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence 4589999999999999999997754333
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.70 E-value=0.25 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
..|+|+|+||+|||||..+|.+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999865
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.70 E-value=0.2 Score=47.92 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=22.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEec
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNG 362 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~----l~~~~i~i~~ 362 (957)
+++|+++|+|+|||.++-.++.. -+..++.+.+
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 45889999999999876655542 2444555543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.69 E-value=0.12 Score=48.19 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
..|+|.|.||+|||+|+..+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.63 E-value=0.067 Score=52.64 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
|+.|.|.|+-|+||||+++.|+..+......+.-
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~ 36 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF 36 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEES
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEE
Confidence 6678889999999999999999999877665543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.055 Score=53.78 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
|+.|.|-|+-|+||||+++.|+..++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 678899999999999999999999876544
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.51 E-value=0.045 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~ 352 (957)
-.|+|+|.||||||||++.+...
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998754
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.50 E-value=0.15 Score=49.66 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLC 349 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaral 349 (957)
++.+++.+|+|+|||+ |-.+
T Consensus 38 g~dvi~~a~tGsGKTl-ay~l 57 (206)
T d1s2ma1 38 GRDILARAKNGTGKTA-AFVI 57 (206)
T ss_dssp TCCEEEECCTTSCHHH-HHHH
T ss_pred CCCEEEecCCcchhhh-hhcc
Confidence 6789999999999994 4444
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.14 Score=52.70 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEecccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEV 365 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l------~~~~i~i~~~~l 365 (957)
.|--|.|.|++|||||||++.|...+ ...+..++-.++
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 34455688999999999999887654 234555554444
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.046 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|+||+|||+|+..+.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998864
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.27 E-value=0.19 Score=48.01 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=22.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHH----hCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE----AGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~----~~~~~i~v~~ 713 (957)
++.|+.+|+|+|||.++-.++.. .+...+.+-+
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 45889999999999876666542 2444544443
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.25 E-value=0.3 Score=45.12 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.++|.|++|+|||+|.+.+...
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.18 E-value=0.22 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.0
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
.++++|++|+|||+|++.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 399999999999999998854
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.11 E-value=0.053 Score=51.87 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.+|+||.|++|+|||++|-.+... |..++.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~ 43 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQR-GHRLIA 43 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence 468999999999999999888764 655443
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.10 E-value=0.082 Score=51.07 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHc---CCcEEEEecc
Q 002169 332 VLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGP 363 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~ 363 (957)
|.|.|+.|+||||+++.|++.+ |.+++.+..+
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P 37 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence 6788999999999999999876 5666666543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.05 E-value=0.061 Score=52.44 Aligned_cols=27 Identities=48% Similarity=0.644 Sum_probs=22.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 332 VLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
|.|+|++||||||+|+.+. ..|.+++.
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vid 31 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLVD 31 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 5689999999999999886 57887664
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.055 Score=50.57 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=19.2
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
+++.|++|+|||+|+..+...
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.069 Score=52.21 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=22.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 332 VLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
|.|+|++|+||||+|+.+. .+|..++.
T Consensus 6 IgitG~igSGKStv~~~l~-~~G~~vid 32 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DLGINVID 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence 5689999999999999886 67876553
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.058 Score=52.82 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.7
Q ss_pred CCCeEEEEcCCCChHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSL 345 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtL 345 (957)
.++.+++..|+|+|||+.
T Consensus 39 ~g~dvl~~a~TGsGKTla 56 (206)
T d1veca_ 39 SGRDILARAKNGTGKSGA 56 (206)
T ss_dssp TTCCEEEECCSSSTTHHH
T ss_pred cCCCEEeeccCccccccc
Confidence 478899999999999953
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.084 Score=51.74 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.2
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 714 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~ 714 (957)
|.|.|+.|+||||+++.|+..+ +.+.+.+.-+
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p 40 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 40 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5566999999999999999876 6677666543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.68 E-value=0.19 Score=52.57 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=25.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCc--EEEEecc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVN--LFTVNGP 363 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~--~i~i~~~ 363 (957)
...|-|.||||+|||||...++..+ |.. ++.++.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDps 90 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 90 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccc
Confidence 3447799999999999999998754 333 4555543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.38 E-value=0.054 Score=50.77 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=19.1
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
.++|+|++|+|||||..++.+
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 499999999999999999864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.32 E-value=0.047 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~ 351 (957)
...|+|.|+||+|||||...+..
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44699999999999999998863
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.22 E-value=0.063 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|++|+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.10 E-value=0.33 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred CCcceeeCCCCChhhHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.-.|+|+|.||+|||++..+|.++
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Confidence 346999999999999999999754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.01 E-value=0.37 Score=50.27 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=43.8
Q ss_pred cceeeCCCCChhhHHHHHHHHHh---C--CcEEEEeCCCcccc----------------------------cccchHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASEA---G--LNFLAVKGPELFSK----------------------------WVGESEKAV 728 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~---~--~~~i~v~~~~l~~~----------------------------~vg~~~~~i 728 (957)
-|-+.||||+|||||...++..+ + ..++.++.+.-++. ..|......
T Consensus 53 ~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~~ 132 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKT 132 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHH
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchhHHH
Confidence 38899999999999999998753 3 34455554322110 112233455
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 002169 729 RSLFAKARANAPSIIFFDEID 749 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid 749 (957)
+..........-+++|+.-+.
T Consensus 133 ~~~i~~~~~~g~d~iiiETVG 153 (323)
T d2qm8a1 133 RETMLLCEAAGFDVILVETVG 153 (323)
T ss_dssp HHHHHHHHHTTCCEEEEEECS
T ss_pred HHHHHhhccCCCCeEEEeehh
Confidence 666666666667799998775
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.97 E-value=0.081 Score=51.79 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.9
Q ss_pred ceeeCCCCChhhHHHHHHHHHhC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
++|.||+|+|||||.+.|.....
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999998864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.97 E-value=0.061 Score=49.08 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.3
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|+|+||+|||+|+..+.+.
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.072 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|++.|+||||||+|++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999988753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.91 E-value=0.078 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.1
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|.++|++||||||+|+.+. +.|.+++.
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vid 31 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLVD 31 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 5689999999999999886 57887764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.86 E-value=0.063 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.++|+|+||||||+|.+++...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.73 E-value=0.052 Score=52.17 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=24.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
.-|.|-|+.|+||||+++.|++.++...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~~~~~ 38 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKNDICL 38 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 34889999999999999999999876443
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.63 E-value=0.12 Score=49.92 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=26.7
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE 715 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~ 715 (957)
|.|.|+.|+||||+++.|++.+ |.+++.+..+.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~ 38 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 5688999999999999999865 66777766543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.62 E-value=0.074 Score=52.89 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
-|.|+|+.||||||+|+.++...|. ..+++
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~g~--~~i~~ 32 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNYSA--VKYQL 32 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCE--EECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC--eEEcc
Confidence 4779999999999999999987764 34443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.61 E-value=0.071 Score=52.66 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=23.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHh--CCcEEEEe
Q 002169 683 ILMFGPPGCSKTLMARAVASEA--GLNFLAVK 712 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~--~~~~i~v~ 712 (957)
+++.||+|+|||||.+.|.+.+ +.....|+
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 6799999999999999998755 34455554
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.60 E-value=0.15 Score=52.38 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh------CCcEEEEeCCCcc
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPELF 717 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~------~~~~i~v~~~~l~ 717 (957)
|-=|.|.|++|+||||++..|...+ ...+..++..+++
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 70 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence 3346688999999999999887654 3456666766653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.57 E-value=0.21 Score=51.20 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=25.8
Q ss_pred cceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 682 GILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
-|.+.|++|+||||++++|+..+ +.+...+.+.++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 37899999999999999998866 5566667766653
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.17 Score=49.93 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.4
Q ss_pred CCCeEEEEcCCCChHHH
Q 002169 328 PTKGVLLHGPPGTGKTS 344 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTt 344 (957)
.++.++...|+|||||.
T Consensus 53 ~g~dvi~~a~TGSGKTl 69 (222)
T d2j0sa1 53 KGRDVIAQSQSGTGKTA 69 (222)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCCeEEEcCcchhhhh
Confidence 47899999999999995
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.045 Score=51.87 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.4
Q ss_pred ceeeCCCCChhhHHHHHHHHHhC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
.+|+||+|+|||++..||.-.+.
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68899999999999999987653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.092 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=22.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
|.|+|++|+||||+|+.+. +.|.+++.
T Consensus 6 IgitG~igSGKStv~~~l~-~~G~~vid 32 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA-DLGINVID 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred EEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence 5689999999999999886 67876553
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.32 E-value=0.073 Score=50.89 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
..|+||.||+|+|||++|-.+... |..++
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~-G~~lv 43 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINK-NHLFV 43 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence 567999999999999999888654 55444
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.30 E-value=0.19 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 002169 330 KGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~ 351 (957)
-.|+|+|+||+|||+|++.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999874
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.19 E-value=0.09 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|+||+|||+|++.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998775
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.16 E-value=0.16 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
-.++++|+||+|||+|.+.+...
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998743
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.13 E-value=0.089 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCChHHHHH-HHHH
Q 002169 329 TKGVLLHGPPGTGKTSLA-RLCA 350 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLa-ralA 350 (957)
..++++.|+||||||+++ ..++
T Consensus 14 ~~~~lI~g~aGTGKTt~l~~rv~ 36 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVITNKIA 36 (306)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEeeCCccHHHHHHHHHH
Confidence 456889999999999754 4343
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.99 E-value=0.13 Score=48.09 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=19.0
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
-++|.|.+|+|||+|++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.98 E-value=0.22 Score=46.86 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.9
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
.|.|+|.||+|||||+++|.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999964
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=88.93 E-value=0.093 Score=49.13 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|+||+|||||++++.+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999974
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.92 E-value=0.14 Score=50.25 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=27.4
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
|.|.|+-|+||||+++.|+..+....+.+.-+
T Consensus 6 I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p 37 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP 37 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTTSEEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCEEEEEC
Confidence 77899999999999999999998776666544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.92 E-value=0.2 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.7
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|++|+|||+|++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 789999999999999998653
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=88.87 E-value=0.63 Score=42.23 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=23.0
Q ss_pred EEEEcCCCChHHH-HHHHHH--HHcCCcEEEEec
Q 002169 332 VLLHGPPGTGKTS-LARLCA--HDSGVNLFTVNG 362 (957)
Q Consensus 332 vLL~GppGtGKTt-LaralA--~~l~~~~i~i~~ 362 (957)
-+++||-.+|||| |++.+. ...+.+++.++.
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp 38 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 38 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 3678999999999 777764 345777766664
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.86 E-value=0.098 Score=48.96 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|++.|++|+|||+|++.+...
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3899999999999999998753
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.86 E-value=0.54 Score=45.74 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=29.8
Q ss_pred ccccccCChHHHHHHHHHHH-hchhhcH-HHHHhcCCCCCCcceeeCCCCChhhHHH
Q 002169 643 VKWEDVGGQREVKTQLMEAV-EWPQKHQ-EAFKRIGTRPPTGILMFGPPGCSKTLMA 697 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i-~~~~~~~-~~~~~l~~~~~~giLL~GPpGtGKTtlA 697 (957)
.+|++++-.+++.+.|.+.- ..|..-+ +.+.. +-..+.+++..|+|+|||+..
T Consensus 10 ~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~--il~g~dvl~~a~TGsGKT~a~ 64 (212)
T d1qdea_ 10 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTF 64 (212)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHH
T ss_pred cChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEeecccccchhhhh
Confidence 46777766666666665431 1111111 11111 113467999999999999844
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.1 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|.+|+|||+|++.+...
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999998863
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.82 E-value=0.1 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|++|+|||+|++.+...
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999988753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.73 E-value=0.16 Score=52.29 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEV 365 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l 365 (957)
-|.+.|++|+||||+++++++.+ +.....+.+.++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 57799999999999999998766 556666776665
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.068 Score=52.81 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
+-|.|-|+.|+||||+++.|++.+...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~~ 29 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCEDW 29 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 568899999999999999999988543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.1 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|.+|+|||+|++.+...
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999988753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.58 E-value=0.098 Score=49.60 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNF 708 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~ 708 (957)
..|+||.|++|.|||++|-.+... |..+
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~-g~~l 42 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR-GHRL 42 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999777665 4433
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.51 E-value=0.12 Score=47.36 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=19.4
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
|.|.|.||+|||||+++|.++
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999865
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.49 E-value=0.27 Score=45.84 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=19.4
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
-++|.|++|||||+|++.+...
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999998763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.091 Score=49.41 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.9
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
+++.|++|||||+|++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.1 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|++|+|||+|++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 388999999999999998874
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.38 E-value=0.1 Score=48.86 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999886
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.12 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|++|+|||+|++.+...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3889999999999999988853
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.17 E-value=0.095 Score=49.39 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|+|+||+|||||..+|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999975
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.14 E-value=0.15 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLA-RLCAH 351 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLa-ralA~ 351 (957)
..++++.|+|||||||++ ..++.
T Consensus 24 ~g~~lV~g~aGSGKTt~l~~ri~~ 47 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVLTHRIAY 47 (318)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHHHH
Confidence 456899999999999754 33443
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.14 E-value=0.089 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.++|.|++|+|||+|.+.+.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999999764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.13 E-value=0.12 Score=48.70 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|++|+|||+|++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998865
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=88.06 E-value=0.56 Score=42.62 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=23.4
Q ss_pred eeeCCCCChhhH-HHHHHH--HHhCCcEEEEeCC
Q 002169 684 LMFGPPGCSKTL-MARAVA--SEAGLNFLAVKGP 714 (957)
Q Consensus 684 LL~GPpGtGKTt-lAkaiA--~~~~~~~i~v~~~ 714 (957)
+++||-.+|||+ |.+.+- ...+.+.+.++..
T Consensus 6 ~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~ 39 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 39 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence 689999999999 777773 3457777776653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.95 E-value=0.12 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|++|+|||+|++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 388999999999999998875
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.92 E-value=0.18 Score=51.36 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=15.9
Q ss_pred CCCCCcceeeCCCCChhhH
Q 002169 677 TRPPTGILMFGPPGCSKTL 695 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTt 695 (957)
+...+.+++.+|+|+|||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 3456779999999999996
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.39 Score=47.08 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCChHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLA 346 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLa 346 (957)
.++.+++..|+|||||...
T Consensus 48 ~g~dvl~~a~TGsGKTlay 66 (218)
T d2g9na1 48 KGYDVIAQAQSGTGKTATF 66 (218)
T ss_dssp HTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEcccchhhhhhh
Confidence 4788999999999999644
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=0.12 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.76 E-value=0.4 Score=45.10 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|-+.|.|++|||||..++.+
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 588999999999999999974
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.74 E-value=0.49 Score=46.31 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.6
Q ss_pred CCcceeeCCCCChhhHHH
Q 002169 680 PTGILMFGPPGCSKTLMA 697 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlA 697 (957)
.+.+++..|+|+|||+..
T Consensus 49 g~dvl~~a~TGsGKTlay 66 (218)
T d2g9na1 49 GYDVIAQAQSGTGKTATF 66 (218)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEcccchhhhhhh
Confidence 467999999999999854
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.68 E-value=0.13 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|||||+|++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.13 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|++.|.+|+|||+|++.+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998853
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.54 E-value=0.2 Score=51.05 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.6
Q ss_pred CCCCCeEEEEcCCCChHHH
Q 002169 326 LRPTKGVLLHGPPGTGKTS 344 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTt 344 (957)
+..++.+++.+|+|+|||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4568889999999999995
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.13 Score=47.99 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|.+|+|||+|++.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999998874
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.46 E-value=0.1 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.2
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
|.|.|+.||||||+|+.|+...|..
T Consensus 4 IgiTG~igSGKsTva~~l~e~~g~~ 28 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNYSAV 28 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCe
Confidence 6799999999999999999987654
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.45 E-value=0.93 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=30.7
Q ss_pred ccccccCChHHHHHHHHHH-HhchhhcHH-HHHhcCCCCCCcceeeCCCCChhhHH
Q 002169 643 VKWEDVGGQREVKTQLMEA-VEWPQKHQE-AFKRIGTRPPTGILMFGPPGCSKTLM 696 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~-i~~~~~~~~-~~~~l~~~~~~giLL~GPpGtGKTtl 696 (957)
.+|++++-.+++.+.|.+. +..|..-+. .+.. +-..+.++...|+|||||+.
T Consensus 17 ~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~--il~g~dvi~~a~TGSGKTla 70 (222)
T d2j0sa1 17 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ--IIKGRDVIAQSQSGTGKTAT 70 (222)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHH
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HHCCCCeEEEcCcchhhhhh
Confidence 3678876666777766654 222222111 1111 11256799999999999974
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=0.48 Score=45.84 Aligned_cols=52 Identities=25% Similarity=0.212 Sum_probs=28.4
Q ss_pred cccccCChHHHHHHHHHH-HhchhhcHH-HHHhcCCCCCCcceeeCCCCChhhHHH
Q 002169 644 KWEDVGGQREVKTQLMEA-VEWPQKHQE-AFKRIGTRPPTGILMFGPPGCSKTLMA 697 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~-i~~~~~~~~-~~~~l~~~~~~giLL~GPpGtGKTtlA 697 (957)
+|+++.-.+++.+.|.+. +..|..-+. .+.. +-..+.+++..|+|+|||+..
T Consensus 4 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~--il~g~dvl~~a~TGsGKTlay 57 (206)
T d1veca_ 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI--ALSGRDILARAKNGTGKSGAY 57 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHH--HHTTCCEEEECCSSSTTHHHH
T ss_pred ChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHH--HHcCCCEEeeccCcccccccc
Confidence 566766556666555543 111111111 1111 112467999999999999743
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.34 E-value=0.13 Score=47.79 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|++.|.+|+|||+|++.+...
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.30 E-value=0.14 Score=48.48 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|.+|||||+|++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.23 E-value=0.15 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.20 E-value=0.12 Score=47.97 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=18.5
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++|.|+||+|||+|+..+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.13 E-value=0.11 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred ceeeCCCCChhhHHHHHHHHHh
Q 002169 683 ILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~ 704 (957)
|.|.|+.|+||||+++.|+..+
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7788999999999999999876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.14 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 002169 330 KGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~ 351 (957)
..|+|.|++|+|||+|++.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.04 E-value=0.12 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|++|+|||+|++.+...
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 899999999999999998754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.04 E-value=0.13 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=16.8
Q ss_pred CCcceeeCCCCChhhHH-HHHHHH
Q 002169 680 PTGILMFGPPGCSKTLM-ARAVAS 702 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtl-AkaiA~ 702 (957)
...+++.|+||||||++ +..++.
T Consensus 14 ~~~~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeeCCccHHHHHHHHHHH
Confidence 34589999999999975 444443
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=86.93 E-value=0.17 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|+||+|||||.++|.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 599999999999999999974
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.90 E-value=0.13 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
++..+|.|+||+|||||+.+|.......
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~ 122 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLR 122 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhh
Confidence 5678999999999999999997654443
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.13 Score=47.83 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=19.2
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|+|++|+|||+|++.+...
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999999764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.14 Score=50.69 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=25.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
|+-|.|-|+-|+||||+++.|+..++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 455889999999999999999999865443
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.78 E-value=0.15 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|.+|+|||+|++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999999875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.13 Score=48.82 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++|.|++|+|||+|++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999999875
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.70 E-value=0.088 Score=49.63 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.6
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.|+|+|+||+|||||..+|.++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.15 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.58 E-value=0.12 Score=48.50 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=22.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~ 351 (957)
+--.....|.|.|+|++|||||.+++.+
T Consensus 11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 11 LPSDTGIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence 3334456799999999999999998853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.51 E-value=0.14 Score=48.14 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
+++.|++|+|||+|++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998865
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.45 E-value=0.14 Score=47.60 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.0
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|.+|+|||+|++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999998753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.17 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|.+|+|||+|++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.24 E-value=0.18 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.20 E-value=0.18 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|++|+|||+|+..+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999988775
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.13 E-value=0.18 Score=47.07 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|++|+|||+|++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998865
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.04 E-value=0.17 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|++.|.+|+|||+|+..+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.03 E-value=0.17 Score=47.39 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998874
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.01 E-value=0.7 Score=44.89 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=16.5
Q ss_pred CCCeEEEEcCCCChHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLA 346 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLa 346 (957)
.++.+++..|+|||||...
T Consensus 46 ~g~dvl~~a~TGsGKT~a~ 64 (212)
T d1qdea_ 46 EGHDVLAQAQSGTGKTGTF 64 (212)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEeecccccchhhhh
Confidence 5788999999999999743
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=0.17 Score=47.45 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=19.0
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
|+|.|.+|+|||+|++.+...
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 999999999999999988753
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.82 E-value=0.12 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.4
Q ss_pred CCcceeeCCCCChhhHHH-HHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMA-RAVASE 703 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlA-kaiA~~ 703 (957)
...+++.|+||||||+++ ..+|..
T Consensus 24 ~g~~lV~g~aGSGKTt~l~~ri~~l 48 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVLTHRIAYL 48 (318)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHHHHH
Confidence 345999999999999754 444443
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.82 E-value=0.084 Score=52.09 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=22.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
-|.|-|+-|+||||+++.|++.+..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4789999999999999999998854
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=85.74 E-value=0.15 Score=48.81 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=19.4
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
.|+|.|+||+|||||.++|.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 499999999999999999975
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.70 E-value=0.16 Score=47.40 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=18.5
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++++|++|+|||+|++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.67 E-value=0.14 Score=47.78 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.9
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++|.|++|+|||+|++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.62 E-value=0.19 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|+|.+|+|||+|++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.43 E-value=0.17 Score=47.16 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=19.0
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|++|||||+|++.+...
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.41 E-value=0.15 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.1
Q ss_pred ceeeCCCCChhhHHHHHHHHHhC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
-+|+||+|+|||++.+||+-.++
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~~lg 49 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKWVFG 49 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 58999999999999999976554
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=85.41 E-value=0.074 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHc
Q 002169 332 VLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l 353 (957)
.+|+||+|+||||+..||.-.+
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.40 E-value=0.17 Score=47.01 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++|.|.+|||||+|++.+..
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999998875
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.30 E-value=0.99 Score=43.52 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.7
Q ss_pred CCCeEEEEcCCCChHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSL 345 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtL 345 (957)
.++.+++..|+|||||+.
T Consensus 37 ~g~dvl~~A~TGsGKTla 54 (207)
T d1t6na_ 37 LGMDVLCQAKSGMGKTAV 54 (207)
T ss_dssp TTCCEEEECCTTSCHHHH
T ss_pred cCCCeEEEeccccccccc
Confidence 478999999999999853
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.25 E-value=0.2 Score=46.93 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998874
|
| >d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cdc48 domain 2-like superfamily: Cdc48 domain 2-like family: Cdc48 domain 2-like domain: Membrane fusion atpase p97 domain 2, P97-Nc species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.19 E-value=0.64 Score=39.04 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhccC--CcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcC
Q 002169 186 IKLLQTCAASWLYS--RSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYP 263 (957)
Q Consensus 186 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~ 263 (957)
+.|....++.+|.+ |||.+||.+.+.-....+.|+|+.++|. ...+|.++|.+...+
T Consensus 22 gnlf~~ylkPYf~~~yrPv~~gD~f~v~g~~r~VEFKVv~~dp~---------------------~~~iV~~~T~I~~eG 80 (94)
T d1e32a3 22 GNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEG 80 (94)
T ss_dssp SCHHHHTHHHHHTTSCEEEETTCEEEEEETTEEEEEEEEEESSS---------------------SEEEECTTCCCBCCS
T ss_pred ccHHHHHHhHHHhhcCccccCCCEEEEccCCeeEEEEEEeecCC---------------------CceEEcCCCEEEeCC
Confidence 35778888888876 9999999999988888999999999886 468899999888654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.17 E-value=0.18 Score=47.07 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=19.1
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
+++.|.+|+|||+|+..+...
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 899999999999999998853
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.17 E-value=0.21 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.16 Score=47.26 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=18.4
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
+++.|.+|+|||+|++.+..
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.05 E-value=0.16 Score=47.38 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=19.1
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
-++|.|.+|||||+|++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999998875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.03 E-value=0.22 Score=46.49 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|||||+|++.+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999885
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.94 E-value=0.2 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|++|+|||+|++.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 388999999999999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.92 E-value=0.19 Score=46.45 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
+++.|++|+|||+|++.+...
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.87 E-value=0.14 Score=48.01 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=9.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|||||+|++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.84 E-value=0.17 Score=47.00 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.0
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
+++.|++|+|||+|++.+...
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.19 Score=46.96 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.||+|||||++++.+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999975
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.72 E-value=0.17 Score=47.71 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA 350 (957)
+-...-.|+|.|++|+|||||++.+.
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHh
Confidence 44556679999999999999999875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.60 E-value=0.092 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|.|.|.||+|||||++++.+.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999865
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.23 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|.+|+|||+|++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.59 E-value=0.96 Score=45.57 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEEecc
Q 002169 302 SKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTVNGP 363 (957)
Q Consensus 302 ~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~---l~~~~i~i~~~ 363 (957)
+++++.+.++. .++.-..+..-||+|..|+|||.++-..+.. .|..+..+-..
T Consensus 86 ~~Q~~ai~ei~---------~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt 141 (264)
T d1gm5a3 86 NAQKRAHQEIR---------NDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 141 (264)
T ss_dssp HHHHHHHHHHH---------HHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred chHHHHHHHHH---------HHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeeh
Confidence 44555555552 2233455677899999999999988766533 35555555443
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=84.58 E-value=0.17 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|.|.|+||+|||||++++.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999853
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.53 E-value=0.2 Score=47.38 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
+++.|.+|||||+|++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.14 E-value=0.19 Score=46.47 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=18.5
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
+++.|.+|+|||+|++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.08 E-value=0.19 Score=46.66 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.5
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
-|+|.|++|+|||+|++.+...
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999998753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.21 Score=46.47 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
+++.|++|+|||+|++.+..
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998865
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.96 E-value=0.24 Score=46.81 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.22 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.6
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.+++.|++|+|||+|++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999998753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.79 E-value=0.2 Score=46.88 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++|.|.+|+|||+|++.+..
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.77 E-value=0.28 Score=48.52 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
.+..+|.|++|+|||||..+|.......
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~ 122 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLR 122 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhh
Confidence 3568999999999999999997665443
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.23 Score=46.46 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=18.9
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|++|+|||+|+..+...
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999888753
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.65 E-value=0.67 Score=45.40 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l 353 (957)
-.+|.|.-|+|||||++.+.+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEeeCCCCCHHHHHHHHHhcC
Confidence 36788999999999999888653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.61 E-value=0.33 Score=52.30 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEe
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVN 361 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~ 361 (957)
.+|+++.|++|+|||++++.+...+ |..++.++
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5789999999999999987665332 44444444
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=0.26 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|.+|+|||+|++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 378999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.48 E-value=0.19 Score=47.34 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~ 702 (957)
+....-.++|.|++|+|||+|.+.+..
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhc
Confidence 344445599999999999999998853
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.37 E-value=0.24 Score=45.95 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=19.0
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|.+|+|||+|++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999998753
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.52 Score=47.60 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
..++-+++.|.-|+||||++-++|..+
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~l 32 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRL 32 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHH
Confidence 457788889999999999999988654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.20 E-value=0.14 Score=47.93 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=19.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~ 702 (957)
...|.|+|+|++|||+|.++|.+
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44599999999999999999854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=83.10 E-value=0.28 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~ 352 (957)
.-.|.|.|.+|+|||||+.++.+.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 446899999999999999998753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.09 E-value=0.27 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|+|.|++|+|||+|++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988774
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.22 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.4
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
-+++.|++|+|||+|+..+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=82.93 E-value=0.11 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
.++..+|.|+||+|||||+.+|.....
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH
Confidence 467788999999999999999975543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.81 E-value=0.23 Score=46.32 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.2
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
|+|+|.||+|||||.++|.+.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=0.19 Score=47.02 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|++.|++|+|||+|++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.50 E-value=0.27 Score=45.60 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=19.1
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++++|.+|+|||+|++.+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999998754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=82.50 E-value=0.21 Score=46.88 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~ 351 (957)
.|.|.|.||+|||||+++|.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999864
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.39 E-value=1.1 Score=45.12 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=26.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHH---hCCcEEEEeCC
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGP 714 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~---~~~~~i~v~~~ 714 (957)
...+...||.|..|+|||.+|-..+.. .|...+.+-..
T Consensus 101 ~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt 141 (264)
T d1gm5a3 101 SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 141 (264)
T ss_dssp SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred ccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeeh
Confidence 345677899999999999988766533 35554444443
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.26 Score=46.04 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.5
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
++|.|++|+|||+|++.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.24 E-value=0.28 Score=45.59 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.6
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|++|+|||+|++.+...
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.86 E-value=0.25 Score=47.14 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=18.9
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
+++.|++|+|||+|++.+...
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999988753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.64 E-value=0.19 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=8.6
Q ss_pred ceeeCCCCChhhHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~ 702 (957)
|+|.|.+|||||+|++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.62 E-value=0.3 Score=46.06 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.5
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
-+++.|.+|+|||+|++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999988754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=81.41 E-value=0.22 Score=46.91 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred cceeeCCCCChhhHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVAS 702 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~ 702 (957)
.|.|+|+|++|||||..+|.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.33 E-value=1.5 Score=40.85 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~ 352 (957)
.|+|.|.+|+|||+|++.+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=81.03 E-value=0.29 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.8
Q ss_pred cceeeCCCCChhhHHHHHHHHH
Q 002169 682 GILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~ 703 (957)
.|.|.|.+|+|||||..++.+.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999754
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=81.00 E-value=1.9 Score=42.43 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=26.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
-..+...||+|..|+|||.++-..+... |..++.+-+
T Consensus 73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~P 112 (233)
T d2eyqa3 73 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 112 (233)
T ss_dssp SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred ccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEcc
Confidence 3456789999999999999887665432 666655554
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.75 E-value=2 Score=41.17 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~ 351 (957)
...+++..|+|+|||+.+-..+.
T Consensus 42 ~~d~iv~a~TGsGKT~~~~l~~~ 64 (208)
T d1hv8a1 42 EYNIVAQARTGSGKTASFAIPLI 64 (208)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHH
T ss_pred CCCeeeechhcccccceeecccc
Confidence 35799999999999987765543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.75 E-value=0.24 Score=50.57 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=32.7
Q ss_pred HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 736 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 736 ~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
....+.+++|||++.- .+...+..++..|..... +..||+|||.|..++
T Consensus 238 ~~~~~~~~~iDEpe~~------------Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~ 286 (308)
T d1e69a_ 238 EIKPSPFYVLDEVDSP------------LDDYNAERFKRLLKENSK--HTQFIVITHNKIVME 286 (308)
T ss_dssp TTSCCSEEEEESCCSS------------CCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGG
T ss_pred hhccCchhhhhhcccc------------CCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH
Confidence 3455679999999953 234445555555554432 467889999998765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.61 E-value=0.3 Score=46.02 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=18.8
Q ss_pred ceeeCCCCChhhHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~ 703 (957)
++|.|.+|+|||+|++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=0.44 Score=51.21 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=26.5
Q ss_pred CCcceeeCCCCChhhHHHHHHHHH---hCCcEEEEeC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASE---AGLNFLAVKG 713 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~---~~~~~i~v~~ 713 (957)
.+|++++|++|+|||++++.+... .+.+++.++.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 468999999999999998876544 3667776664
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.23 E-value=0.37 Score=45.58 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 002169 331 GVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA 350 (957)
.|+|.|.+|+|||+|++.+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999884
|