Citrus Sinensis ID: 002173

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950------
MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccHHHHHHHcccccccHHcHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcHHccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHccHHHHcccccccEEEEccccEEEEEccccccccHHHEcHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccHHcccccEEEccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEEEEEEEEcccccccccccccccccEEEEcccEEEccccccccccccccccccccHHHHHcHHHHHHccccccEEEccccccccccHHHHHHHHccccccHcHHHHHHHHHHHccc
MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
MVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldltLVSLLKREEAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdrEWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECelvqsdnskknkeliayrtrskqkk
MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVqrqkleeqrqllHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
****************************************************************************************************************************************LTLVSLL****************************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**********************************************************************************************************************LKIAVDYM*****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFIN*****************IV*************TDDVVLPYISEIDGMV*****************************************************
M*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***************LHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKIS*KRHLNQQTS*A************************************RFSWIKRFADLVFKH*********************S***NSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKR*****************************SS******G*V*E***********************************NEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTEC**********************K*NK*****R*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query956 2.2.26 [Sep-21-2011]
Q9FLH01042 Putative nuclear matrix c yes no 0.822 0.754 0.494 0.0
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 Back     alignment and function desciption
 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/889 (49%), Positives = 597/889 (67%), Gaps = 103/889 (11%)

Query: 1   MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEE 60
           M+E+A KK A+AEAK+ AAE+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE 
Sbjct: 171 MIEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECET 230

Query: 61  KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 120
           KE E++ ERQ+L++R+K LQQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++  
Sbjct: 231 KENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTT 290

Query: 121 VEEKFKALNEEKSNLDLTLVSLLKREE---------------------------AVIERE 153
            EE+ KA  ++KSNL++ L    KREE                           AV ERE
Sbjct: 291 FEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERE 350

Query: 154 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 213
           +SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE 
Sbjct: 351 SSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIES 410

Query: 214 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 273
           KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++
Sbjct: 411 KRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEED 470

Query: 274 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 333
            + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KL
Sbjct: 471 INRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKL 530

Query: 334 KEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL 393
           KEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELRKEAE +  +R   S  L
Sbjct: 531 KEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYL 590

Query: 394 KDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEM 453
           KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEM
Sbjct: 591 KDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEM 650

Query: 454 QKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLD 513
           QKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD
Sbjct: 651 QKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLD 710

Query: 514 LERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLED 573
            ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+
Sbjct: 711 AERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLEN 770

Query: 574 LKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNN 626
           LK+A+D M++++MQ S LE S +K+SA   L Q+       +  D + D       V+N+
Sbjct: 771 LKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNS 821

Query: 627 GDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLT 686
            D +N+ S+++    +P S   FSWIKR  +L+FK S E S                   
Sbjct: 822 EDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST------------------ 862

Query: 687 INSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAAR 746
                   + + + E      VPSE       + LES   +  A     S++ + + A R
Sbjct: 863 --------LMHHYEEEGG---VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGR 905

Query: 747 KRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNK 806
           KRR +    + SE    NNK+RK   D  +  S+EA     ++   N+PED+H L S ++
Sbjct: 906 KRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQ 960

Query: 807 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFIN 855
           +  P G+                  +++ + +KI+ VTCE T+  N + 
Sbjct: 961 TQTPSGM------------------VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,360,359
Number of Sequences: 539616
Number of extensions: 14064296
Number of successful extensions: 133175
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 5231
Number of HSP's that attempted gapping in prelim test: 74882
Number of HSP's gapped (non-prelim): 27699
length of query: 956
length of database: 191,569,459
effective HSP length: 127
effective length of query: 829
effective length of database: 123,038,227
effective search space: 101998690183
effective search space used: 101998690183
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query956
359497042 1117 PREDICTED: putative nuclear matrix const 0.968 0.829 0.549 0.0
2555795071052 Filamin-A-interacting protein, putative 0.921 0.837 0.544 0.0
4494513331025 PREDICTED: putative nuclear matrix const 0.845 0.788 0.531 0.0
3565119841048 PREDICTED: putative nuclear matrix const 0.905 0.826 0.504 0.0
3565634801050 PREDICTED: putative nuclear matrix const 0.907 0.826 0.496 0.0
2402564861010 branched-chain-amino-acid aminotransfera 0.822 0.778 0.510 0.0
3341886551018 branched-chain-amino-acid aminotransfera 0.813 0.764 0.513 0.0
2384816501042 protein little nuclei4 [Arabidopsis thal 0.822 0.754 0.494 0.0
7486519 1421 hypothetical protein F6H11.110 - Arabido 0.811 0.546 0.497 0.0
224118128689 predicted protein [Populus trichocarpa] 0.666 0.924 0.539 1e-178
>gi|359497042|ref|XP_003635406.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi|296085718|emb|CBI29518.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/986 (54%), Positives = 693/986 (70%), Gaps = 60/986 (6%)

Query: 1    MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEE 60
            MVE+AQK+F EAEAKLHAAE+ QAEA  + R+AERKLQEV AREDDL RR+ SFK+DC+E
Sbjct: 160  MVEDAQKRFVEAEAKLHAAEAFQAEAICFRRTAERKLQEVEAREDDLRRRLISFKSDCDE 219

Query: 61   KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 120
            KE+EII ERQSLS+R+K +QQ  ERL+D Q LLN+RE++I S+ QEL+R EKELEAS++N
Sbjct: 220  KEKEIILERQSLSERQKNVQQGQERLIDGQALLNQREEYIFSRSQELNRLEKELEASKSN 279

Query: 121  VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 180
            +E++ +ALNEEKSNL+L L SL  REE V++REA L KKE ++L+ QE +ASKES+E+QK
Sbjct: 280  IEKELRALNEEKSNLELKLASLTTREEDVVKREALLNKKEHEILILQEKIASKESDEVQK 339

Query: 181  IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 240
            ++A HE AL+ +++EFEAEL  K KL EDEIE KRRA ELR++DL  RE+  LEREH+LE
Sbjct: 340  LMALHEIALKTRKAEFEAELETKRKLVEDEIEAKRRASELREVDLSNREDFALEREHELE 399

Query: 241  VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 300
            VQSRAL +KEKD+ E+ + L+EKE  L A EK+ +L+K  L+KEKEE+N +K +++KSLS
Sbjct: 400  VQSRALAEKEKDVTEKLNSLDEKEKYLNAAEKDVELEKIHLEKEKEEINKMKLNIEKSLS 459

Query: 301  SLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK 360
            SL++KKKQV+ AK+K+EAMKSE  EL VLE+KLKEE+DV+RAQKLELM E D+L+ +KA 
Sbjct: 460  SLEDKKKQVDHAKEKVEAMKSETSELLVLEMKLKEEIDVIRAQKLELMAEADELRAQKAN 519

Query: 361  FEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNR 420
            FEAEWE IDEKREELR EAER+A ER+ +SK LKDERDSL+ E+DAMRDQ+K++V+SL+R
Sbjct: 520  FEAEWESIDEKREELRNEAERIAEERLAISKFLKDERDSLKLEKDAMRDQYKQEVESLSR 579

Query: 421  EREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAF 480
            ERE+FM+KMVHE SEWF+KIQQERADFLL IEMQK++LENCI+ RREELES F+EREK F
Sbjct: 580  EREDFMSKMVHERSEWFSKIQQERADFLLDIEMQKKELENCIDNRREELESYFKEREKTF 639

Query: 481  EEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 540
            E+EKM+E Q ISS+KE+  KELE V  E+KRLD ERMEIN+D +RRDREWAEL+NSIEEL
Sbjct: 640  EQEKMKELQHISSMKERVAKELEHVASEMKRLDAERMEINLDHERRDREWAELSNSIEEL 699

Query: 541  MVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISA 600
             +QRQKL++QR+LLHADR+EI  + E LKKLEDLKIA D +A++EMQ+S  E SQ+K+  
Sbjct: 700  KMQRQKLKKQRELLHADRKEIHTQIEHLKKLEDLKIASDNIALAEMQQSNQEPSQRKVYV 759

Query: 601  KRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVF 660
            KR+   Q ++ +AD  S QK +V  NG  FN P++    S+SP +   FSW KR A+L+F
Sbjct: 760  KRYYKAQNTIPNADFESHQKINVVKNGSGFNLPAL--PDSSSPSTATPFSWFKRCAELIF 817

Query: 661  KHSGENSVENDEEKSPTSDHEDASLTINSR----------------------KRQPVRYS 698
            K S E       EKS  S+ E+A+LT+                          RQP RY+
Sbjct: 818  KLSPEKPSIKHGEKSSISNSENANLTLAGNLDLSDGFDREVHDRNEKTHSISDRQPTRYA 877

Query: 699  FGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRV----DVDC 754
             GEPKVILEVPS  E VK    LESE  ++ ++    S SE  + A RKRRV      D 
Sbjct: 878  LGEPKVILEVPSSGEDVKGLHTLESEIKKDTSENSSHSFSEKELLAGRKRRVVNSSSNDW 937

Query: 755  VDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLH 814
            VD +    Q NK+R+QQE         A +   V+ Q               S+  EG  
Sbjct: 938  VDTTLEQRQKNKKRRQQES--------AADPCGVSIQ---------------SDAREGQD 974

Query: 815  TLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIV 874
               S N TQGG EE ++LI D+IIKISEVTCE      F NQ K +  QNSV E  QDI 
Sbjct: 975  VSISLNQTQGGAEETNLLITDEIIKISEVTCENV---VFDNQAKPNALQNSVVELGQDI- 1030

Query: 875  KVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECEL- 933
            + GGTN  +     + V+       + + +E    +V  + E  Q Q+E    K + EL 
Sbjct: 1031 QHGGTNGLADSNAENCVLSSDFKAQEKIGKEVLFVDVGQVIEHSQPQDESISEKSQQELQ 1090

Query: 934  ----VQSDNSKKNKELIAYRTRSKQK 955
                 +SD+ KK  E +  R RS+QK
Sbjct: 1091 EQGVPKSDDDKKLSEKVGRRMRSRQK 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579507|ref|XP_002530596.1| Filamin-A-interacting protein, putative [Ricinus communis] gi|223529844|gb|EEF31776.1| Filamin-A-interacting protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451333|ref|XP_004143416.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511984|ref|XP_003524701.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356563480|ref|XP_003549990.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|240256486|ref|NP_201378.5| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|334188653|ref|NP_001190626.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010720|gb|AED98103.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010722|gb|AED98105.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188655|ref|NP_001190627.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010724|gb|AED98107.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238481650|ref|NP_001154799.1| protein little nuclei4 [Arabidopsis thaliana] gi|26397174|sp|Q9FLH0.1|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi|10177335|dbj|BAB10684.1| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi|332010721|gb|AED98104.1| protein little nuclei4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224118128|ref|XP_002317738.1| predicted protein [Populus trichocarpa] gi|222858411|gb|EEE95958.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query956
TAIR|locus:21699501042 LINC4 "LITTLE NUCLEI4" [Arabid 0.709 0.650 0.400 1.3e-116
TAIR|locus:20195291132 LINC1 "AT1G67230" [Arabidopsis 0.565 0.477 0.229 2.8e-38
TAIR|locus:20318751128 LINC2 "LITTLE NUCLEI2" [Arabid 0.614 0.520 0.224 3.3e-34
TAIR|locus:20124231085 LINC3 "LITTLE NUCLEI3" [Arabid 0.444 0.391 0.244 7e-30
ZFIN|ZDB-GENE-050208-3171422 tnks1bp1 "tankyrase 1 binding 0.424 0.285 0.208 6.3e-14
DICTYBASE|DDB_G0271058 1528 vilC "villin-like protein C" [ 0.449 0.281 0.250 1e-11
TAIR|locus:5049552941221 AT4G27595 "AT4G27595" [Arabido 0.273 0.213 0.266 1.7e-11
ZFIN|ZDB-GENE-030616-583 1376 acin1a "apoptotic chromatin co 0.382 0.265 0.248 2.6e-11
UNIPROTKB|F6XPP6 3254 GOLGB1 "Uncharacterized protei 0.288 0.084 0.236 1.8e-10
UNIPROTKB|G1K3071972 MYH11 "Myosin-11" [Gallus gall 0.433 0.209 0.228 3e-10
TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
 Identities = 281/702 (40%), Positives = 391/702 (55%)

Query:    12 AEAKLHAAESLQAEANR----YHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXX 67
             AE KL   ES + +  R    +    E K  E+V     L+ R  S + +          
Sbjct:   203 AERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQE----HERLLD 258

Query:    68 XXQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 127
                SL+ R+  +    + L + +  L+  +     + +    K+  LE + A   ++ + 
Sbjct:   259 AQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEV 318

Query:   128 -LNEEKSNLDLTL-----VSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKI 181
                   S L L L        L  + AV ERE+SL KKEQ+LLV++E +ASKES  IQ +
Sbjct:   319 CFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNV 378

Query:   182 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV 241
             +AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEV
Sbjct:   379 LANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEV 438

Query:   242 QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXX 301
             QSRAL +KEKD+ E+S  L+EKE  L+A E++ +            +  +          
Sbjct:   439 QSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTS 498

Query:   302 XXXXXXXVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 361
                    V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKF
Sbjct:   499 LEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKF 558

Query:   362 EAEWEMIDXXXXXXXXXXXXXXXXXXXXXXXXKDERDSLRQERDAMRDQHKRDVDSLNRE 421
             EAEWE ID                        KDERD++++ERDA+R+QHK DV+SLNRE
Sbjct:   559 EAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNRE 618

Query:   422 REEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIXXXXXXXXXXXXXXXXXXX 481
             REEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CI                   
Sbjct:   619 REEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFE 678

Query:   482 XXXXXXXQQISSXXXXXXXXXXQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 541
                    ++I S           V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL 
Sbjct:   679 QEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELK 738

Query:   542 VXXXXXXXXXXXXHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAK 601
             V             A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA 
Sbjct:   739 VQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA- 797

Query:   602 RHLNQQTSLAHADLGSDQKFD-VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVF 660
               L Q+      +L        V+N+ D +N+ S+++    +P S   FSWIKR  +L+F
Sbjct:   798 --LKQKVVSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIF 854

Query:   661 KHSGENS--VENDEEKSPTSDHEDASLTINSRKRQPVRYSFG 700
             K S E S  + + EE+      +   L + S +R+   Y+ G
Sbjct:   855 KTSPEKSTLMHHYEEEGGVPSEK---LKLESSRREEKAYTEG 893
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0005652 "nuclear lamina" evidence=IDA
GO:0006997 "nucleus organization" evidence=IMP
GO:0034399 "nuclear periphery" evidence=IDA
TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6XPP6 GOLGB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G1K307 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010658001
SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (1056 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query956
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-12
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-10
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-10
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-10
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 7e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-07
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 3e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-07
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-07
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 6e-06
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-06
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 9e-06
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 1e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 2e-05
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 4e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 7e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 5e-04
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 6e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.001
COG4717984 COG4717, COG4717, Uncharacterized conserved protei 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.002
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 0.002
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 0.002
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 69.4 bits (170), Expect = 7e-12
 Identities = 82/377 (21%), Positives = 166/377 (44%), Gaps = 32/377 (8%)

Query: 3    ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 62
            +  +++ AE EA+L   E          RS E  L+E+  + ++L R++   K +    E
Sbjct: 670  KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729

Query: 63   REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 122
             E+    + L  R + L++E E L +    L ER + +  +L+ L     +L+     +E
Sbjct: 730  EEL----EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 123  EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 182
            EK +AL EE   L+  L    +R +A+     SL+++ ++L         +E  E+++ I
Sbjct: 786  EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERL--------EQEIEELEEEI 837

Query: 183  ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQ 242
               E  L   + E E EL  + +  ++E+E+     E  + +L + EE   E E +L   
Sbjct: 838  EELEEKLDELEEELE-ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 243  SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 302
               L + ++++                  ++   +   L+ + E + +   +L++ L   
Sbjct: 897  ESELAELKEEI------------------EKLRERLEELEAKLERLEVELPELEEELEEE 938

Query: 303  DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 362
             E   +    + ++E ++ E   L  + ++  EE + V  +  EL  + + L+  K K  
Sbjct: 939  YEDTLET-ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 363  AEWEMIDEKREELRKEA 379
               E +D+++ E  KE 
Sbjct: 998  EVIEELDKEKRERFKET 1014

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 956
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.21
PRK02224880 chromosome segregation protein; Provisional 99.1
PRK02224880 chromosome segregation protein; Provisional 98.87
PRK03918880 chromosome segregation protein; Provisional 98.84
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.83
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.77
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.65
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.55
PRK03918880 chromosome segregation protein; Provisional 98.55
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.48
PRK01156895 chromosome segregation protein; Provisional 98.38
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 98.34
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.02
PRK01156895 chromosome segregation protein; Provisional 97.89
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.79
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.68
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.59
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.42
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.05
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.05
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.97
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.85
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 96.73
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.62
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 96.58
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 96.47
PRK12704520 phosphodiesterase; Provisional 96.29
PRK11637428 AmiB activator; Provisional 96.21
PRK04863 1486 mukB cell division protein MukB; Provisional 96.07
PF10174775 Cast: RIM-binding protein of the cytomatrix active 95.98
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 95.86
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.84
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 95.71
PRK00106535 hypothetical protein; Provisional 95.55
PF00038312 Filament: Intermediate filament protein; InterPro: 95.49
PRK12704520 phosphodiesterase; Provisional 95.11
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 94.99
PRK00106535 hypothetical protein; Provisional 94.76
PHA02562562 46 endonuclease subunit; Provisional 94.49
KOG0018 1141 consensus Structural maintenance of chromosome pro 94.24
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 94.06
PF10174775 Cast: RIM-binding protein of the cytomatrix active 93.86
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.8
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.26
PRK11637428 AmiB activator; Provisional 92.69
PHA02562562 46 endonuclease subunit; Provisional 92.47
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 92.18
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 91.23
PF00038312 Filament: Intermediate filament protein; InterPro: 91.16
PRK12705508 hypothetical protein; Provisional 89.59
KOG09331174 consensus Structural maintenance of chromosome pro 89.35
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 88.87
KOG0996 1293 consensus Structural maintenance of chromosome pro 87.88
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 87.62
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 86.91
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 86.17
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 86.01
PF13851201 GAS: Growth-arrest specific micro-tubule binding 85.92
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 85.87
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 84.74
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 84.44
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 83.79
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 83.72
PF05701522 WEMBL: Weak chloroplast movement under blue light; 82.98
KOG0977546 consensus Nuclear envelope protein lamin, intermed 81.85
KOG0996 1293 consensus Structural maintenance of chromosome pro 80.72
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 80.63
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=99.21  E-value=8.2e-05  Score=95.88  Aligned_cols=452  Identities=21%  Similarity=0.266  Sum_probs=277.0

Q ss_pred             HHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhh-------hhHHHHHHHHHhchHHHH
Q 002173            4 NAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADC-------EEKEREIIRERQSLSDRK   76 (956)
Q Consensus         4 ~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Er-------ea~E~~i~kQRe~L~Ewe   76 (956)
                      .+++.+.++...+...+-.-+.+.+....+..+++++..--+++...+.-...|.       ...+++|..+++.+..--
T Consensus       905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~  984 (1930)
T KOG0161|consen  905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS  984 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666666666666555554444444444444       444445555555555555


Q ss_pred             HHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhh-------hhhHhHHHHHhhHHHH
Q 002173           77 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS-------NLDLTLVSLLKREEAV  149 (956)
Q Consensus        77 KkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~-------dl~~rl~~L~~rEke~  149 (956)
                      |.=...++++-+.+.-|...++.++.-.+...+.+-.|++....++.+.....+-+.       ++...-..+..-....
T Consensus       985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~ 1064 (1930)
T KOG0161|consen  985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQK 1064 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            555557888889999999999999999999999999998888888887777666552       2222222222233445


Q ss_pred             HHHHHHHHHhHHhHHHHHHHhhhhh--hHHHHHHHHH-----------------hHHHHhhhhhhHHHHHHHHhhhHHHH
Q 002173          150 IEREASLQKKEQKLLVSQETLASKE--SNEIQKIIAN-----------------HESALRVKQSEFEAELAIKYKLAEDE  210 (956)
Q Consensus       150 ~~~~~~Le~KEkeLl~leEKL~aRE--~~EIQKLlde-----------------h~a~L~~KK~EFElElE~kRKs~eeE  210 (956)
                      ..+...|.++|-+|..++.++..-.  ....||.+.+                 ..+.++..++++..+++....-+++-
T Consensus      1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778888888888888776433  2233333332                 23445556666666666666666665


Q ss_pred             HHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHHHHHHH----HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 002173          211 IEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK  283 (956)
Q Consensus       211 le~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~  283 (956)
                      ......-.   .++|.++..+-..+.+-....+.++..+.    +.=.+|.+-+..++.....+......++.+-..|..
T Consensus      1145 ~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ 1224 (1930)
T KOG0161|consen 1145 GGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAA 1224 (1930)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333333   34555555555444444444444443333    223345555555666566666666666666666666


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 002173          284 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA  363 (956)
Q Consensus       284 eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~  363 (956)
                      +-..+...++++++..-.++   .++.+.+.++.-...-++++..-.++|..|+..+=.|.++....+..|-..+..|+.
T Consensus      1225 ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1225 ELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred             HHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence            66666777777777775555   456666667777777777788888888888888888888888888888888888888


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHH
Q 002173          364 EWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQE  443 (956)
Q Consensus       364 EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~E  443 (956)
                      +-+.+   +.+|..|    +..+-++..-+.    ++..+.+.++.+|.-+.+....-.-. ..+-.-+=+.|-.|++..
T Consensus      1302 qle~~---k~qle~e----~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~~~~k~e~~ 1369 (1930)
T KOG0161|consen 1302 QLEEL---KRQLEEE----TREKSALENALR----QLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQWKKKFEEE 1369 (1930)
T ss_pred             HHHHH---HHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            77766   3344433    344444443332    45556777777777777665421110 112222345555666666


Q ss_pred             HHHhhhhhHhhhhhhHHHHHHHHHHHH
Q 002173          444 RADFLLGIEMQKRDLENCIEKRREELE  470 (956)
Q Consensus       444 rad~l~d~ElqkreLE~~iqkRqEEiE  470 (956)
                      ..+-+-+++.-|+.|...++.-++.+|
T Consensus      1370 ~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1370 VLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            666566666666666555555555444

>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query956
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-17
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 4e-07
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 7e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 3e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 5e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 8e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 91.5 bits (226), Expect = 7e-19
 Identities = 106/644 (16%), Positives = 214/644 (33%), Gaps = 164/644 (25%)

Query: 27  NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 84
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 85  -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 134
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 135 LDLTLVSLLK----REEAVIEREASLQ--KKEQKLLV------SQETLASK--ESNEIQK 180
           L        K    R +  ++   +L   +  + +L+       +  +A     S ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 181 IIANH------------ESALRVKQ-----------SEFEAELAIKYKLAEDEIEKKRRA 217
            +               E+ L + Q           S  +    IK ++      + RR 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL 237

Query: 218 WELRDLDLGQREESLL------EREH--DLEVQSRALV---DK------------EKDLV 254
            + +       E  LL        +      +  + L+    K               L 
Sbjct: 238 LKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 255 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQKSLSSLDEKKKQV 309
             S  L   E K +   K  D +   L +E    N     II   ++  L++ D  K  V
Sbjct: 293 HHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HV 350

Query: 310 NCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMVETDKLQLEKAKF 361
           NC  DKL   ++S    L   E + + + L        +    L L+             
Sbjct: 351 NC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395

Query: 362 EAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS----------LRQERDAMR 408
              W ++I         +   V  +  +   SL  K  ++S          L+ + +   
Sbjct: 396 ---WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 409 DQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQKRDLENCIEKRR 466
             H+  VD  N  +    + ++  + +  +++ I       L  IE  +R          
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL------F 493

Query: 467 EELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRR 526
             +   FR     F E+K+R      S    A   +      +++L   +  I  +  + 
Sbjct: 494 RMVFLDFR-----FLEQKIRH----DSTAWNASGSILNT---LQQLKFYKPYICDNDPKY 541

Query: 527 DREWAELNN---SIEELMVQRQKLEEQRQLLHADREEIQAESER 567
           +R    + +    IEE ++  +  +  R  L A+ E I  E+ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query956
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.87
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.77
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.72
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.8
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.08
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.01
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.06
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.19
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 90.43
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 86.78
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 83.43
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.87  E-value=0.021  Score=54.61  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=33.9

Q ss_pred             hhHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHH
Q 002173            2 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ   80 (956)
Q Consensus         2 ~e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLq   80 (956)
                      |+...+|+.-....+..+...++++...-..+...+..+++.-..++...-.+..+.......+..-+..+..+...+.
T Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
T 1c1g_A            1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKAT   79 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555444444444444444444444443333333333333333333333333333333333333333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00