Citrus Sinensis ID: 002207
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | 2.2.26 [Sep-21-2011] | |||||||
| P95803 | 349 | D-alanine--D-alanine liga | yes | no | 0.344 | 0.939 | 0.280 | 3e-22 | |
| Q3A2G9 | 305 | D-alanine--D-alanine liga | yes | no | 0.305 | 0.954 | 0.268 | 1e-21 | |
| Q5LYJ2 | 348 | D-alanine--D-alanine liga | yes | no | 0.332 | 0.910 | 0.263 | 2e-20 | |
| B9DUS0 | 348 | D-alanine--D-alanine liga | yes | no | 0.353 | 0.968 | 0.264 | 2e-20 | |
| Q03JC6 | 348 | D-alanine--D-alanine liga | yes | no | 0.333 | 0.913 | 0.269 | 4e-20 | |
| Q5M355 | 348 | D-alanine--D-alanine liga | yes | no | 0.332 | 0.910 | 0.260 | 4e-20 | |
| Q0SNW3 | 361 | D-alanine--D-alanine liga | yes | no | 0.353 | 0.933 | 0.280 | 7e-20 | |
| A6W7R2 | 376 | D-alanine--D-alanine liga | yes | no | 0.355 | 0.901 | 0.274 | 2e-19 | |
| A3CLS3 | 348 | D-alanine--D-alanine liga | yes | no | 0.332 | 0.910 | 0.245 | 4e-19 | |
| O51218 | 361 | D-alanine--D-alanine liga | yes | no | 0.346 | 0.914 | 0.272 | 5e-19 |
| >sp|P95803|DDL_STRMU D-alanine--D-alanine ligase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ddl PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTNQVL--ESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
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Cell wall formation. Streptococcus mutans (taxid: 1309) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 4 |
| >sp|Q3A2G9|DDL_PELCD D-alanine--D-alanine ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 168/384 (43%), Gaps = 93/384 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL + +++ L RC Y +++A D
Sbjct: 10 KIAVLMGGLSAEREVSLRTGKAI------SQALTRCGYEVTDIDA------------GRD 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+LE V++ F +HGRFGEDG +Q +LE ++P+ G+G
Sbjct: 52 LAQQLEK----------------TGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
A A DK + G I P F + +G ++ + L ++ +VVKP
Sbjct: 96 ASSLAMDKVATKKMLCYHG-IATPGFAVMRRGQKICGT-LPDY-----------PLVVKP 142
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFD 314
R GS+IG+++ + D + A G + E DD V+VE F+ G+E T VL D
Sbjct: 143 AREGSTIGISIVH---DEQELAAG-LEEAFRHDDLVLVEQFI-AGAEVTVGVL------D 191
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
P LP + V K ++Y+ KY P Q Y P P + ++++ A
Sbjct: 192 GQP---LPI---------IQVVPKGGFYDYQSKYTPG-QTEYLLPAPLPETLYGALQDSA 238
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+F+ +G C AR+D F+ + T + ++N I GM +TS L
Sbjct: 239 VRVFEAIGCCGAARVD--FMVTDTGFYC----------------LEVNTIPGMTETSLLP 280
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
+ A+ VG S ++ I+ A R
Sbjct: 281 KAANAVGMSFDELVERILAGASLR 304
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Cell wall formation. Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q5LYJ2|DDL_STRT1 D-alanine--D-alanine ligase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G S+S+I++ ++
Sbjct: 314 YPLLWENMGLSYSDIIKELV 333
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Cell wall formation. Streptococcus thermophilus (strain CNRZ 1066) (taxid: 299768) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|B9DUS0|DDL_STRU0 D-alanine--D-alanine ligase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 174/386 (45%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q ++ P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFY---KTQEFTVQPSESE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A SL A + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G+++ + +T L+ S + VKP G
Sbjct: 124 VAMDKITTKRVLESAGIPQVNYTVYIEGNDLEDC------ITETLETLSFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A I+ L++A + L+ D R+++E A ++VG +
Sbjct: 178 SSVGISKAES-IEGLREAIALALK-YDSRILIE------QGVVAREIEVGLLGNTKVAST 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y+ KY+ +++ P + + +R A F+
Sbjct: 230 LPGEV-----------IKDVAFYDYQAKYI-DNKISMAIPATIDEGITSQMRYFAEQAFK 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL E G + ++N + G Q S
Sbjct: 278 AIGACGLSRCD-FFL----------------AEDGNLYLNELNTMPGFTQWSMYPLLWDN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S+++ ++ A F S+
Sbjct: 321 MGLSYSDLIEELVSLAEEMFQKRESH 346
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Cell wall formation. Streptococcus uberis (strain ATCC BAA-854 / 0140J) (taxid: 218495) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q03JC6|DDL_STRTD D-alanine--D-alanine ligase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 61/379 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP G E E V L+ + V VKP GS
Sbjct: 124 VAMDKIMTKRILEVAG---VPQVAYTG--YIEGEDLEAAVAETLEKLTFPVFVKPANMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ A L+ A + L+ D R+++E +G ++
Sbjct: 179 SVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------VV 212
Query: 322 PTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 213 AREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRAY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 272 AAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 315 PLLWENMGLSYSDLIKELV 333
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Cell wall formation. Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) (taxid: 322159) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q5M355|DDL_STRT2 D-alanine--D-alanine ligase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 314 YPLLWENMGLSYSDLIKELV 333
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Cell wall formation. Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (taxid: 264199) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q0SNW3|DDL_BORAP D-alanine--D-alanine ligase OS=Borrelia afzelii (strain PKo) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 168/389 (43%), Gaps = 52/389 (13%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA SV L + + + YID+ + + + P D D
Sbjct: 7 LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKR----NVKEVLGYPVIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESCIEEALKYDLTIVIEKFIEAREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L+++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 280 YAFLVYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISM 323
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 324 FSKMCSHDGLQFKDLIDNLIDYAFQSYIN 352
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Cell wall formation. Borrelia afzelii (strain PKo) (taxid: 390236) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|A6W7R2|DDL_KINRD D-alanine--D-alanine ligase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ddl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 170/405 (41%), Gaps = 66/405 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGD--DLL----------------VRCYYIDRN 120
RV ++ GG S+E IS +A VL + GD D++ R D
Sbjct: 8 RVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGA 67
Query: 121 LNAYAISSAQVYSNTPADFDFK-LESL--AQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
L + V P D D K L+ L A G +L+E E VD+V P +HG FGE
Sbjct: 68 LPEVPATGTPV--GLPLDVDTKALQRLGGAPGAPALAELGE-----VDVVLPLLHGPFGE 120
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESE 235
DG +Q +LE + +VG+G A DK L ++ QG P SF + + +
Sbjct: 121 DGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDG 180
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVE 293
V +++ V VKP RAGSSIG+T + S + + E + D +VVVE
Sbjct: 181 -----VVAEVEALGYPVFVKPARAGSSIGIT----RVTSREGLAAAVAEAVSHDPKVVVE 231
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
L G ++ D+ G P+ LP EVE+ G D +++ KYL +
Sbjct: 232 AALVGREIECGVLEDLDGG---EPLTSLPGEVEV--VGGHD------FYDFEAKYLDSGN 280
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
V P P V+ ++R A +F+ +G AR+D + P+
Sbjct: 281 VRLTCPADLPDDVVAAVRRTAVRVFEAMGAEGLARVDLFVDPARGE-------------- 326
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I+ +IN + G S + + G + ++ +I A R
Sbjct: 327 DGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQLALRR 371
|
Cell wall formation. Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) (taxid: 266940) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|A3CLS3|DDL_STRSV D-alanine--D-alanine ligase OS=Streptococcus sanguinis (strain SK36) GN=ddl PE=3 SV=2 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 5 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 64
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 65 LMTNATVDMSQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 112
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 113 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 167
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 168 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 198
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 199 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 257
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 258 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 300
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 301 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 340
|
Cell wall formation. Streptococcus sanguinis (strain SK36) (taxid: 388919) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
| >sp|O51218|DDL_BORBU D-alanine--D-alanine ligase OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=ddl PE=3 SV=2 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLTYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
|
Cell wall formation. Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) (taxid: 224326) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| 225439600 | 952 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 0.947 | 0.787 | 0.0 | |
| 224091078 | 931 | predicted protein [Populus trichocarpa] | 0.964 | 0.987 | 0.749 | 0.0 | |
| 255586280 | 1000 | D-alanine-D-alanine ligase, putative [Ri | 0.985 | 0.939 | 0.752 | 0.0 | |
| 357506461 | 955 | D-alanine--D-alanine ligase [Medicago tr | 0.962 | 0.960 | 0.742 | 0.0 | |
| 449439825 | 960 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.909 | 0.767 | 0.0 | |
| 356532203 | 949 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 0.923 | 0.766 | 0.0 | |
| 356566751 | 955 | PREDICTED: uncharacterized protein LOC10 | 0.920 | 0.918 | 0.764 | 0.0 | |
| 449483593 | 894 | PREDICTED: uncharacterized LOC101204441 | 0.916 | 0.976 | 0.753 | 0.0 | |
| 297833634 | 943 | D-alanine--D-alanine ligase family [Arab | 0.946 | 0.956 | 0.682 | 0.0 | |
| 357506463 | 877 | D-alanine--D-alanine ligase [Medicago tr | 0.877 | 0.953 | 0.734 | 0.0 |
| >gi|225439600|ref|XP_002265851.1| PREDICTED: uncharacterized protein LOC100265424 [Vitis vinifera] gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/904 (78%), Positives = 787/904 (87%), Gaps = 2/904 (0%)
Query: 52 GVEGARASAEVLEDQTMAKEA--RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDD 109
GV RA+ EV+ D + +E GRVLRVG+ICGGPSAERGISLNSARSV+DHIQGDD
Sbjct: 49 GVGVVRAATEVVVDDPVVREGGKEKGRVLRVGVICGGPSAERGISLNSARSVIDHIQGDD 108
Query: 110 LLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFP 169
LLV CYYID NLNAYAIS AQVYSNTP DFDFKLESLAQGF SLS+FAEHLAA+VDIVFP
Sbjct: 109 LLVSCYYIDCNLNAYAISPAQVYSNTPTDFDFKLESLAQGFRSLSDFAEHLAASVDIVFP 168
Query: 170 TIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229
IHGRFGEDGGIQE+LEK N+PFVGT S CRQAFDKYD+SLE+ +QGF+T+P+FL+QGS
Sbjct: 169 VIHGRFGEDGGIQELLEKSNIPFVGTRSNECRQAFDKYDSSLELDRQGFVTLPNFLVQGS 228
Query: 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR 289
NESELS WF N LD NSGKVVVKPTRAGSSIGVTVAYGV DSLKKA II EGIDDR
Sbjct: 229 HSNESELSKWFAENHLDTNSGKVVVKPTRAGSSIGVTVAYGVADSLKKANEIIAEGIDDR 288
Query: 290 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL 349
V+VE+FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE+Q + D+REKDAIFNYRRKYL
Sbjct: 289 VLVEIFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQLHDNADMREKDAIFNYRRKYL 348
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
PTQQVAYHTPPRFP+ VI SIREGASLLFQRLGL DFARIDGWFLPSS + S+SE K G
Sbjct: 349 PTQQVAYHTPPRFPMDVIGSIREGASLLFQRLGLHDFARIDGWFLPSSILIPSASEKKLG 408
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVS 469
T+ GT++FTDINLISGMEQTSFLFQQASKVGFSHSNILR+II AC RFPNLASY S+S
Sbjct: 409 RTKSGTVIFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIQRACLRFPNLASYTSLS 468
Query: 470 SHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTP 529
+ LP RS S+ EA K + +R+VFVIFGGDTSERQVSLMSGTNVWLNLQAFND+EV P
Sbjct: 469 NLLPRRSKSSQLIEAFPKTKDVRKVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDLEVIP 528
Query: 530 CLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTS 589
CLLA + SS D + + D + +W+LPYSLVLRHTTEEVLAACIEAIEPDRAA TS
Sbjct: 529 CLLAPTSGYSSKTDMDEKELDVRMKTIWTLPYSLVLRHTTEEVLAACIEAIEPDRAALTS 588
Query: 590 HLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649
LRNQV+NDL+EGLKK WFTGFD+ADE P+R+S+ +W+KLAKE QATVFIAVHGG+GED
Sbjct: 589 ELRNQVMNDLMEGLKKQHWFTGFDLADEPPVRYSVEQWVKLAKEVQATVFIAVHGGMGED 648
Query: 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709
GTLQ LLEA GVPYTGPGV SK CMDKVATSLALNHL GVLTINK V RKEDLL P
Sbjct: 649 GTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGVLTINKKVLRKEDLLNAP 708
Query: 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 769
+ DIWH+LTSKLQ +TLCVKPARDGCSTGVARLCC EDL VYVKALEEC LRIP NS S+
Sbjct: 709 VHDIWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLAVYVKALEECFLRIPSNSLSK 768
Query: 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 829
AHG+IEMP+PPPE+LIFEPF+ETDEI+ SS + N A+RL+W+G+SRWVE+TVGV+GK G
Sbjct: 769 AHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVNDTANRLIWEGHSRWVEVTVGVVGKRG 828
Query: 830 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889
SMHSL PSVTVKESGDILSLEEKFQGGTGINLTPPP SI+S AL+ CKQRIELIAN LQ
Sbjct: 829 SMHSLTPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIISKAALESCKQRIELIANTLQ 888
Query: 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949
LEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTVLIHQAL+E+PPMYPH+FFR +LDLGS
Sbjct: 889 LEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEEPPMYPHRFFRTLLDLGS 948
Query: 950 ERFL 953
ERF+
Sbjct: 949 ERFI 952
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa] gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1461 bits (3781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/957 (74%), Positives = 812/957 (84%), Gaps = 38/957 (3%)
Query: 4 LAFSSSFSFL-----RNDAVG-GITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEGAR 57
L+F+S SFL +NDAVG + F +P NRK +C T+ + +GV A
Sbjct: 6 LSFASKLSFLHNGNYKNDAVGRNLLFDNPNSYKWNRKFS---DSCFSKTRCSGVGVTRAA 62
Query: 58 ASAE-VLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116
++ E V+++ ++KE RVLRVGLICGGPSAERGISLNSARSVLDHI+GDDL V CYY
Sbjct: 63 STTEAVVDNNRVSKE--DSRVLRVGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYY 120
Query: 117 IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
ID ++NA+AISSAQVYSNTPADFDFKLESLA+GF SL EFAEHLAA+VDIVFP IHGRFG
Sbjct: 121 IDYDMNAFAISSAQVYSNTPADFDFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFG 180
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236
EDGGIQE+LE++NVPFVGTGSR CR+AFDKYDASLE+SKQGFITVPSFL+QGSE+ E EL
Sbjct: 181 EDGGIQELLERHNVPFVGTGSRECRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECEL 240
Query: 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
S WF +N+LDPNSGKVVVKP RAGSSIGVTVAYGV DSLKKA +I EGIDD+++VE+FL
Sbjct: 241 SKWFTSNQLDPNSGKVVVKPARAGSSIGVTVAYGVSDSLKKANDLISEGIDDKILVEIFL 300
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
EGGSEFTAIVLDVGSGFDCHPVVLLPTEVE+QF GSVDVRE+DAIFNYRRKYLPTQQVAY
Sbjct: 301 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAY 360
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
HTPPRFP+ VI +IREGAS+LF++LGL DFARIDGWFLP+S H SSS K+G TE GTI
Sbjct: 361 HTPPRFPLKVIENIREGASILFRQLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTI 420
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRS 476
++ DINLISGMEQTSFLFQQASKVGFSHSNILR++I AC RFPNLAS+N VS+HLP RS
Sbjct: 421 IYNDINLISGMEQTSFLFQQASKVGFSHSNILRSVIHRACLRFPNLASHNEVSAHLPRRS 480
Query: 477 SGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSI 536
EA NKREGIR++FV+FGGDTSERQVSLMSGTNVWLNL AF++ + L
Sbjct: 481 KSLPFDEAFNKREGIRKIFVLFGGDTSERQVSLMSGTNVWLNLLAFDETTI----LMMVP 536
Query: 537 DCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVV 596
+C YSLVLRHTTEEVL ACIEAIEP +AA TSHLRNQV+
Sbjct: 537 EC----------------------YSLVLRHTTEEVLDACIEAIEPAQAALTSHLRNQVM 574
Query: 597 NDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLL 656
NDL+E LKKHSWFTGFDIADE P+R+S+ +W+KLAKE QATVFIAVHGGIGEDGTLQSLL
Sbjct: 575 NDLMECLKKHSWFTGFDIADEQPVRYSLEKWVKLAKEVQATVFIAVHGGIGEDGTLQSLL 634
Query: 657 EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE 716
E+EGVP+TGPG ASKTCMDKVATSLAL+HLADLG+LTINKDV RKEDLL P ++IW E
Sbjct: 635 ESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGILTINKDVCRKEDLLNMPALEIWDE 694
Query: 717 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 776
L SKLQC+TLCVKPARDGCSTGVARLCC EDL VY+KAL++CLLRIPP+SFS++HGMIEM
Sbjct: 695 LISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYIKALKDCLLRIPPDSFSKSHGMIEM 754
Query: 777 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836
P+PPPE LIFEPF+ETDEI+ SS+S + A L+WKGNSRWVEITVGVIG GSM SL P
Sbjct: 755 PSPPPERLIFEPFIETDEIVVSSKSGGEKAQGLVWKGNSRWVEITVGVIGTLGSMRSLSP 814
Query: 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRI 896
SVTVKE+GDILSLEEKFQGGTGINLTPPPASI+S EAL++CK RIELIAN LQLEGFSRI
Sbjct: 815 SVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNEALERCKHRIELIANTLQLEGFSRI 874
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
DAF+NVD+GEVLIIEVNTVPGMTPSTVLIHQAL+EQPPMYPH+FFR +LDL SER +
Sbjct: 875 DAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQPPMYPHKFFRTLLDLASERII 931
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis] gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1448 bits (3748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/960 (75%), Positives = 809/960 (84%), Gaps = 21/960 (2%)
Query: 1 MTSLAFSSSFSFLRNDAVGGITFRSPKVLSRNRK------LKLKKSACRYATKTTSLGVE 54
M SLAF+S S LR+ + R V R R KLK ++ LGV
Sbjct: 1 MASLAFTSKLSSLRSASNHN---RHGVVACRTRSNLLHLDCKLKSNSISCLKNPQCLGVG 57
Query: 55 GARASAEV-LEDQTMAKEA--RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
RA+A+V ++D+ + E G RVL+VGLICGGPSAERGISLNSARSVLDHIQG+DL
Sbjct: 58 VTRAAADVAVDDRVLQNEKAEEGNRVLKVGLICGGPSAERGISLNSARSVLDHIQGEDLH 117
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID LNAYAIS AQVYSNTPADFDFKLESLA+ F SLSEFAEHLAA+VDIVFP I
Sbjct: 118 VSCYYIDYELNAYAISPAQVYSNTPADFDFKLESLARQFSSLSEFAEHLAASVDIVFPVI 177
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE YN+PFVGTGS CRQAFDKY AS+E+SK+GFITVP+FL+QG E
Sbjct: 178 HGRFGEDGGIQELLENYNIPFVGTGSSECRQAFDKYYASIELSKRGFITVPNFLVQGKEA 237
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
+ESEL WF +N+LDP SG VVVKP AGSSIGVTVAYGV DSLKKAK +ILEGIDD+V+
Sbjct: 238 DESELFKWFASNRLDPTSGTVVVKPAVAGSSIGVTVAYGVADSLKKAKDLILEGIDDKVL 297
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VELFL+GGSEFTAIV+DVGSGF+CHPVVLLPTEVELQF GS D+RE DAIFNYRRKYLPT
Sbjct: 298 VELFLDGGSEFTAIVVDVGSGFECHPVVLLPTEVELQFHGSADIRENDAIFNYRRKYLPT 357
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQVAYHTPPRFP+ +I IR+GASLLFQRL L DFARIDGW+LPSS FSSSE K+G T
Sbjct: 358 QQVAYHTPPRFPVDIIKKIRQGASLLFQRLRLRDFARIDGWYLPSSNSAFSSSEGKFGRT 417
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR+II AC RFP+LAS ++S
Sbjct: 418 DLGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIHRACLRFPSLASNYNLSDC 477
Query: 472 LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCL 531
LP +S + TE+ +K EG R+VFV+FGGDTSERQVSLMSGTNVWL LQAF+D++VTPCL
Sbjct: 478 LPRKSKSLQLTESFSKSEGTRKVFVLFGGDTSERQVSLMSGTNVWLKLQAFDDLDVTPCL 537
Query: 532 LASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHL 591
LA S N D S R VW LPYSLVLRHTTEEVL ACIEAIEP +AAFTSHL
Sbjct: 538 LAPS---------NGQSSDDSFRAVWLLPYSLVLRHTTEEVLDACIEAIEPAQAAFTSHL 588
Query: 592 RNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651
R+QV NDL+EGLKKHSWF GFDIADELP S+ EWIKLAKE QATVFIAVHGGIGEDGT
Sbjct: 589 RSQVTNDLMEGLKKHSWFKGFDIADELPTIFSMKEWIKLAKEIQATVFIAVHGGIGEDGT 648
Query: 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711
LQS+LEA+GVPYTGPGV+ASKTCMDKVATSLAL+HLADLGVLTI K+V +K+DL P +
Sbjct: 649 LQSMLEAQGVPYTGPGVVASKTCMDKVATSLALSHLADLGVLTIKKEVYKKQDLQNMPAL 708
Query: 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 771
++WH LTS LQC+TLCVKPARDGCSTGVARL C EDL VYVKALE+CLLRIPPNS S+AH
Sbjct: 709 EVWHNLTSALQCETLCVKPARDGCSTGVARLRCTEDLAVYVKALEDCLLRIPPNSLSKAH 768
Query: 772 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831
G+IEMP+PPPE+LIFEPF+ETDEI+ SS+ST +NA+RLMWKG+SRW+EITVGVIG GSM
Sbjct: 769 GVIEMPHPPPELLIFEPFIETDEIVVSSKSTCENANRLMWKGHSRWLEITVGVIGTRGSM 828
Query: 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891
HSL PSVTVKE+GDILSLEEKFQGGTGINLTPPP SI+S E LD+CKQ IELIAN LQLE
Sbjct: 829 HSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPTSIVSNEVLDRCKQHIELIANTLQLE 888
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GFSRIDAF+NVD+GEVLIIEVNTVPGMTPSTVLIHQAL+EQPP+YPH+FFR +LDL SER
Sbjct: 889 GFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQPPVYPHRFFRTLLDLASER 948
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506461|ref|XP_003623519.1| D-alanine--D-alanine ligase [Medicago truncatula] gi|355498534|gb|AES79737.1| D-alanine--D-alanine ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1418 bits (3670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/929 (74%), Positives = 787/929 (84%), Gaps = 12/929 (1%)
Query: 26 PKVLSRNRKLKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEARG---GRVLRVGL 82
PK L N KL CR AT+++++ ARA+ + + +G GR LRVGL
Sbjct: 34 PKHLELNHKL----ITCR-ATRSSAV----ARATISEVVVVSSGVAEKGKEEGRALRVGL 84
Query: 83 ICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK 142
ICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSNTPADFDFK
Sbjct: 85 ICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAHAISSAQVYSNTPADFDFK 144
Query: 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
LESLAQ F +L++ AEHL+A VDIVFP IHGRFGEDGGIQE+LEKYNVPFVGTGS C Q
Sbjct: 145 LESLAQSFSTLADLAEHLSAAVDIVFPVIHGRFGEDGGIQELLEKYNVPFVGTGSSECCQ 204
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS 262
AFDKY AS E+ K GF+TVPSFL+QG E N+SELS WF ++LDP++GKVVVKPTR GSS
Sbjct: 205 AFDKYKASSELRKHGFVTVPSFLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSS 264
Query: 263 IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322
IGVTVAYGV DSL KA I+ EGIDD+V++ELFLEGGSEFTAIVLDVGS D PV LLP
Sbjct: 265 IGVTVAYGVNDSLVKASEIMSEGIDDKVLIELFLEGGSEFTAIVLDVGSSSDSFPVALLP 324
Query: 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382
TEVELQF G D++E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS+LFQ+L
Sbjct: 325 TEVELQFLGENDLKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASILFQQLH 384
Query: 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 442
L DFARIDGWFLP S SSSE+++G +E GTI+FTDIN+ISGMEQTSFLFQQASKVGF
Sbjct: 385 LQDFARIDGWFLPDSGCKLSSSESEFGRSESGTIIFTDINMISGMEQTSFLFQQASKVGF 444
Query: 443 SHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502
SH+NILR+I+ HAC RFPNLAS + +SS +P RS S+ ++ +REG ++VFVIFGGDT
Sbjct: 445 SHTNILRSIVHHACLRFPNLASVSGISSQIPSRSKSSELNKSFPRREGAQKVFVIFGGDT 504
Query: 503 SERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYS 562
SERQVSLMSGTNVWLNL FND+EVTPCLL+S+ D +S +D I D +R VWSLPYS
Sbjct: 505 SERQVSLMSGTNVWLNLLGFNDLEVTPCLLSSTSDYASSVDIGIKADDVWNRTVWSLPYS 564
Query: 563 LVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRH 622
LVLRHTTEEVL AC+EAIEP+RAA TS LR QV+NDL+EGLK H+WFTGFDIA+ELP +
Sbjct: 565 LVLRHTTEEVLDACVEAIEPNRAALTSDLRKQVMNDLMEGLKDHNWFTGFDIANELPKKF 624
Query: 623 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
S+ EWIKLAKE +ATVFIAVHGGIGEDG LQSLL+AEGVPYTGPG +ASK CMDKVATS+
Sbjct: 625 SLREWIKLAKEVKATVFIAVHGGIGEDGRLQSLLDAEGVPYTGPGALASKICMDKVATSV 684
Query: 683 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
A+NHLA+LG+LTINK+V RK+DL PI DIWH+LT KLQC+TLCVKPARDGCSTGVARL
Sbjct: 685 AVNHLANLGILTINKEVWRKDDLSNKPINDIWHDLTQKLQCETLCVKPARDGCSTGVARL 744
Query: 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
C+ DL +Y+KALE+ LLRIPPNS S+AHGMIEMPNPPPE+LIFEPF+ETDEI+ SS+
Sbjct: 745 RCSNDLAIYIKALEDSLLRIPPNSLSKAHGMIEMPNPPPELLIFEPFIETDEIIVSSKVK 804
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
N+ MWKGNSRWVEITVGVIGK GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLT
Sbjct: 805 NETGHGFMWKGNSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLT 864
Query: 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
PPP SIMS +AL +CK+ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPST
Sbjct: 865 PPPLSIMSEKALQRCKKHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPST 924
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VL+HQAL+EQPP+YPHQFFR +LDL SER
Sbjct: 925 VLVHQALAEQPPLYPHQFFRTLLDLASER 953
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439825|ref|XP_004137686.1| PREDICTED: uncharacterized protein LOC101204441 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1404 bits (3633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/874 (76%), Positives = 769/874 (87%), Gaps = 1/874 (0%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVGLICGGPSAERGISLNSARSVLDHIQG DL V CYYID LNAYAISSAQVYSNTPA
Sbjct: 86 LRVGLICGGPSAERGISLNSARSVLDHIQGHDLQVSCYYIDSELNAYAISSAQVYSNTPA 145
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DFDFKL+SLA+GF SL++FAEHL+ +VDIVFP IHGRFGEDGGIQE+LE +N+PFVGTGS
Sbjct: 146 DFDFKLKSLARGFQSLTDFAEHLSTSVDIVFPVIHGRFGEDGGIQELLETHNIPFVGTGS 205
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ AFDKY+ASLE+ + GFITVP+FL+Q V+E+ELS WFV+N+LD +SGKVVVKP
Sbjct: 206 KESSNAFDKYNASLELDRLGFITVPNFLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPA 265
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
RAGSSIGV+VAYGV+DSLKKA II E IDD+V+VE+FLEGGSEFTAIVLDVGSG CHP
Sbjct: 266 RAGSSIGVSVAYGVVDSLKKANEIISEEIDDKVLVEVFLEGGSEFTAIVLDVGSGSVCHP 325
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
VVLLPTEVE+Q G D EKDAIFNYRRKYLPTQQVAYHTPPRFPI VI +IREGASLL
Sbjct: 326 VVLLPTEVEIQSCGLADAGEKDAIFNYRRKYLPTQQVAYHTPPRFPIDVIETIREGASLL 385
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LGLCDFARIDGW+LPS +H S S K+G TE GT+++TDINLISGMEQTSFLFQQA
Sbjct: 386 FKGLGLCDFARIDGWYLPSFSHESSCSTGKFGKTESGTVVYTDINLISGMEQTSFLFQQA 445
Query: 438 SKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVI 497
SKVGFSHSNILR+II HAC R+P+L S + +S ++P RS S+ ++A + E IR+VFVI
Sbjct: 446 SKVGFSHSNILRSIIYHACLRYPSLESLDCMSGNVPRRSISSQRSQAYSTHESIRKVFVI 505
Query: 498 FGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVW 557
FGG+TSERQVSLMSGTNVWLNLQAF+D+EVTPCLLASSI+ SG+D + + D +S+ VW
Sbjct: 506 FGGNTSERQVSLMSGTNVWLNLQAFDDLEVTPCLLASSIEQESGVDLDKNEADLTSKTVW 565
Query: 558 SLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADE 617
SLPYSLVLRHTTEEVLAAC+EAIEP+RAA TSHLR VV DL +GLKKHSWF GFDI D+
Sbjct: 566 SLPYSLVLRHTTEEVLAACVEAIEPNRAALTSHLRELVVTDLEQGLKKHSWFAGFDIKDK 625
Query: 618 LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
LP+R S+ +WI+ KE ATVFIAVHGGIGEDGTLQSLLEA+GVPYTGPGV AS CMDK
Sbjct: 626 LPVRFSLEQWIEKVKEVDATVFIAVHGGIGEDGTLQSLLEAKGVPYTGPGVAASNICMDK 685
Query: 678 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 737
V+TSLALNHL+D GVLTI KDVRRK+DLL+ PI+++WH+LT KLQC++LCVKPARDGCST
Sbjct: 686 VSTSLALNHLSDFGVLTIKKDVRRKDDLLRFPILNVWHDLTCKLQCQSLCVKPARDGCST 745
Query: 738 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 797
GVARLCCA+DL VYVKALE+CL+RIP NS S+AHGMIEMP PPPE+LIFEPF+ETDEI+
Sbjct: 746 GVARLCCADDLAVYVKALEDCLVRIPSNSLSKAHGMIEMPKPPPELLIFEPFIETDEIIV 805
Query: 798 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857
SS++ + ++RL+WKG SRWVEITVGV+G GSM SL PSVTVKESGDILSLEEKFQGGT
Sbjct: 806 SSKTIDA-SERLLWKGQSRWVEITVGVVGTRGSMRSLSPSVTVKESGDILSLEEKFQGGT 864
Query: 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
GINLTPPP SI+S E+L KCKQ IELIANALQLEGFSRIDAFV+VD+G+VL+IEVNTVPG
Sbjct: 865 GINLTPPPLSIISNESLGKCKQHIELIANALQLEGFSRIDAFVDVDSGKVLVIEVNTVPG 924
Query: 918 MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
MTPSTVLIHQAL+E PP+YPHQFFR++LDL SER
Sbjct: 925 MTPSTVLIHQALAETPPVYPHQFFRRLLDLASER 958
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532203|ref|XP_003534663.1| PREDICTED: uncharacterized protein LOC100819595 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1400 bits (3625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/877 (76%), Positives = 761/877 (86%), Gaps = 1/877 (0%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
RVL++GLICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSNT
Sbjct: 71 RVLKLGLICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAFAISSAQVYSNT 130
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
PADFDFKLESLAQ F +LS+ A+HLA VDIVFP IHG+FGEDGGIQE+LEKYNVPFVGT
Sbjct: 131 PADFDFKLESLAQSFQTLSDLAKHLATAVDIVFPVIHGQFGEDGGIQELLEKYNVPFVGT 190
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
GS+ C QAFDK+ ASLE+ K GFITVPSFL+QG E ++SELS WF ++LDP+ GKVVVK
Sbjct: 191 GSKECCQAFDKHKASLELRKHGFITVPSFLVQGYETDKSELSEWFKKHQLDPDLGKVVVK 250
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
PTR GSSIGV VAYGV DSL KA I+ EGID +V++E+FLEGG+EFTAIVLDVGS D
Sbjct: 251 PTRGGSSIGVGVAYGVNDSLVKANEIMSEGIDKKVLIEIFLEGGNEFTAIVLDVGSDLDS 310
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PVVLLPTEVELQF+G+ DV+E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS
Sbjct: 311 FPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGAS 370
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSS-SETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LLFQRL L DFARIDGWFLP+S+ S S++++G TE G I+FTDIN+ISGMEQTSFLF
Sbjct: 371 LLFQRLCLQDFARIDGWFLPNSSSKLSPFSQSEFGRTESGAIIFTDINMISGMEQTSFLF 430
Query: 435 QQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREV 494
QQASKVGFSH+NILR+II HAC RFPNLAS + +S LP RS + ++ ++REG R+V
Sbjct: 431 QQASKVGFSHTNILRSIIHHACLRFPNLASVSGISGQLPSRSKSLQRNKSFSRREGTRKV 490
Query: 495 FVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSR 554
FVIFGG+TSERQVSLMSGTNVWLNL AF+D+EVTPCLL+ + +C+S +D D +R
Sbjct: 491 FVIFGGNTSERQVSLMSGTNVWLNLLAFHDLEVTPCLLSPTSECASSIDMGKKADDVMNR 550
Query: 555 VVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDI 614
VWSLPYSLVLRHTTEEVL AC+EAIEP+ AA TS LR +V+NDL+EGLK H+WFTGFDI
Sbjct: 551 TVWSLPYSLVLRHTTEEVLDACMEAIEPEHAAITSELRKKVMNDLMEGLKDHNWFTGFDI 610
Query: 615 ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674
AD+LP++ S+ +WIKLAKE QATVFIAVHGGIGEDGTLQSLL+AEGVPYTGPG MASK C
Sbjct: 611 ADDLPVKFSLRQWIKLAKEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKIC 670
Query: 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
MDKVATS+AL HLA+ GVLTINKDVR+K+DL PI D WH+LT KLQC+TLCVKPA+DG
Sbjct: 671 MDKVATSVALKHLANSGVLTINKDVRQKDDLSNKPINDTWHDLTRKLQCQTLCVKPAKDG 730
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
CSTGVARLCC EDL +YVKALE+CLLRIPPN S+AHGMIEMPNPPPE LIFEPF+ETDE
Sbjct: 731 CSTGVARLCCPEDLAIYVKALEDCLLRIPPNCLSKAHGMIEMPNPPPEHLIFEPFIETDE 790
Query: 795 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 854
I+ +S+ + L WKG+SRWVEITVGVIGK GSMHSL PSVTVKESGDILSLEEKFQ
Sbjct: 791 IIVTSKFEDATGHGLTWKGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKFQ 850
Query: 855 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 914
GGTGINLTPPP SIMS AL +CKQ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNT
Sbjct: 851 GGTGINLTPPPLSIMSENALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNT 910
Query: 915 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VPGMTPSTVLIHQAL EQPP+YPHQFFRK+LDL SER
Sbjct: 911 VPGMTPSTVLIHQALVEQPPLYPHQFFRKLLDLASER 947
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566751|ref|XP_003551592.1| PREDICTED: uncharacterized protein LOC100775955 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/878 (76%), Positives = 764/878 (87%), Gaps = 1/878 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GRVL+VGLICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSN
Sbjct: 76 GRVLKVGLICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAFAISSAQVYSN 135
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TPADFDFKLESLAQ F +LS+ A+HLA VDIVFP IHG+FGEDGGIQE+LEKYNVPFVG
Sbjct: 136 TPADFDFKLESLAQSFQTLSDLAKHLATAVDIVFPVIHGQFGEDGGIQELLEKYNVPFVG 195
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
TGS+ C QAFDK+ ASLE+ K GFITVPSFL+QG E +SELS WF ++LDP+ GKVVV
Sbjct: 196 TGSKECCQAFDKHKASLELRKHGFITVPSFLVQGYETKKSELSEWFEKHQLDPDLGKVVV 255
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPTR GSSIGV VAYGV DSL KA I+ EGID++V++E++LEGGSEFTAIVLDVGS D
Sbjct: 256 KPTRGGSSIGVRVAYGVNDSLVKANEIMSEGIDNKVLIEIYLEGGSEFTAIVLDVGSASD 315
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQF+G+ DV+E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GA
Sbjct: 316 SFPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGA 375
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSS-ETKYGSTEWGTILFTDINLISGMEQTSFL 433
SL+FQ+L L DFARIDGWFLP+S+ S S E+++G TE GTI+FTDINLISGMEQTSFL
Sbjct: 376 SLIFQQLCLQDFARIDGWFLPNSSSKLSPSPESEFGRTESGTIIFTDINLISGMEQTSFL 435
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIRE 493
FQQASKVGFSH+NILR+II HAC RFPNLAS + +S LP RS + +++ ++ EG R+
Sbjct: 436 FQQASKVGFSHTNILRSIIHHACLRFPNLASVSGISGQLPSRSKSLQQSKSFSRHEGTRK 495
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
VFVIFGG+TSERQVSLMSGTNVWLNL AF+D+EVTPCLL+ + +C+S +D D +
Sbjct: 496 VFVIFGGNTSERQVSLMSGTNVWLNLLAFHDLEVTPCLLSPTSECASSVDIGKKADDVMN 555
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
R V SLPYSLVLRHTTEEVL AC+EAIEP+RAA TS LR +V+NDL+EGLK H+WFTGFD
Sbjct: 556 RTVLSLPYSLVLRHTTEEVLDACMEAIEPERAAITSDLRKKVMNDLMEGLKDHNWFTGFD 615
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
IAD+LP + S+ +WIKLAKE QAT+FIAVHGGIGEDGTLQSLL+AEGVPYTGPG MASK
Sbjct: 616 IADDLPAKFSLRQWIKLAKEVQATIFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKI 675
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
CMDKVATS+A+ HLA+ GVLTINK+VR+K+DL PI D WH+LT KLQC+TLCVKPA+D
Sbjct: 676 CMDKVATSVAIKHLANSGVLTINKNVRQKDDLSNKPISDTWHDLTRKLQCQTLCVKPAKD 735
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
GCSTGVARLCC+EDL +YV+ALE+CLLRIPPNS S+AHGMIEMPNPPPE LIFEPF+ETD
Sbjct: 736 GCSTGVARLCCSEDLAIYVRALEDCLLRIPPNSLSKAHGMIEMPNPPPEYLIFEPFIETD 795
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
EI+ +S+ + L WKG+SRWVEITVGVIGK GSMHSL PSVTVKESGDILSLEEKF
Sbjct: 796 EIIVTSKFEDATGHGLTWKGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKF 855
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
QGGTGINLTPPP SIMS AL +CKQ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVN
Sbjct: 856 QGGTGINLTPPPLSIMSENALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVN 915
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
TVPGMTPSTVLIHQAL EQPP+YPHQFFRK+LDL SER
Sbjct: 916 TVPGMTPSTVLIHQALVEQPPLYPHQFFRKLLDLASER 953
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483593|ref|XP_004156633.1| PREDICTED: uncharacterized LOC101204441 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1379 bits (3568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/880 (75%), Positives = 763/880 (86%), Gaps = 7/880 (0%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVGLICGGPSAERGISLNSARSVLDHIQG DL V CYYID LNAYAISSAQVYSNTPA
Sbjct: 14 LRVGLICGGPSAERGISLNSARSVLDHIQGHDLQVSCYYIDSELNAYAISSAQVYSNTPA 73
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DFDFKL+SLA+GF SL++FAEHL+ +VDIVFP IHGRFGEDGGIQE+LE +N+PFVGTGS
Sbjct: 74 DFDFKLKSLARGFQSLTDFAEHLSTSVDIVFPVIHGRFGEDGGIQELLETHNIPFVGTGS 133
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ AFDKY+ASLE+ + GFITVP+FL+Q V+E+ELS WFV+N+LD +SGKVVVKP
Sbjct: 134 KESSNAFDKYNASLELDRLGFITVPNFLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPA 193
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
RAGSSIGV+VAYGV+DSLKKA II E IDD+V+VE+FLEGGSEFTAIVLDVGSG CHP
Sbjct: 194 RAGSSIGVSVAYGVVDSLKKANEIISEEIDDKVLVEVFLEGGSEFTAIVLDVGSGSVCHP 253
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
VVLLPTEVE+Q G D EKDAIFNYRRKYLPTQQVAYHTPPRFPI VI +IREGASLL
Sbjct: 254 VVLLPTEVEIQSCGLADAGEKDAIFNYRRKYLPTQQVAYHTPPRFPIDVIETIREGASLL 313
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LGLCDFARIDGW+LPS +H S S K+G TE GT+++TDINLISGMEQTSF F +
Sbjct: 314 FKGLGLCDFARIDGWYLPSFSHESSCSTGKFGKTESGTVVYTDINLISGMEQTSFCFSKP 373
Query: 438 SKV------GFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGI 491
+ FSHSNILR+II HAC R+P+L S + +S ++P RS S+ ++A + E I
Sbjct: 374 QSLIYSFPGWFSHSNILRSIIYHACLRYPSLESLDCMSGNVPRRSISSQRSQAYSTHESI 433
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
R+VFVIFGG+TSERQVSLMSGTNVWLNLQAF+D+EVTPCLLASSI+ SG+D + + D
Sbjct: 434 RKVFVIFGGNTSERQVSLMSGTNVWLNLQAFDDLEVTPCLLASSIEQESGVDLDKNEADL 493
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
+S+ VWSLPYSLVLRHTTEEVLAAC+EAIEP+RAA TSHLR VV DL +GLKKHSWF G
Sbjct: 494 TSKTVWSLPYSLVLRHTTEEVLAACVEAIEPNRAALTSHLRELVVTDLEQGLKKHSWFAG 553
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
FDI D+LP+R S+ +WI+ KE ATVFIAVHGGIGEDGTLQSLLEA+GVPYTGPGV AS
Sbjct: 554 FDIKDKLPVRFSLEQWIEKVKEVDATVFIAVHGGIGEDGTLQSLLEAKGVPYTGPGVAAS 613
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
CMDKV+TSLALNHL+D GVLTI KDVRRK+DLL+ PI+++WH+LT KLQC++LCVKPA
Sbjct: 614 NICMDKVSTSLALNHLSDFGVLTIKKDVRRKDDLLRFPILNVWHDLTCKLQCQSLCVKPA 673
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
RDGCSTGVARLCCA+DL VYVKALE+CL+RIP NS S+AHGMIEMP PPPE+LIFEPF+E
Sbjct: 674 RDGCSTGVARLCCADDLAVYVKALEDCLVRIPSNSLSKAHGMIEMPKPPPELLIFEPFIE 733
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
TDEI+ SS++ + ++RL+WKG SRWVEITVGV+G GSM SL PSVTVKESGDILSLEE
Sbjct: 734 TDEIIVSSKTIDA-SERLLWKGQSRWVEITVGVVGTRGSMRSLSPSVTVKESGDILSLEE 792
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
KFQGGTGINLTPPP SI+S E+L KCKQ IELIANALQLEGFSRIDAFV+VD+G+VL+IE
Sbjct: 793 KFQGGTGINLTPPPLSIISNESLGKCKQHIELIANALQLEGFSRIDAFVDVDSGKVLVIE 852
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VNTVPGMTPSTVLIHQAL+E PP+YPHQFFR++LDL SER
Sbjct: 853 VNTVPGMTPSTVLIHQALAETPPVYPHQFFRRLLDLASER 892
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp. lyrata] gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1281 bits (3315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/933 (68%), Positives = 748/933 (80%), Gaps = 31/933 (3%)
Query: 29 LSRNRKLKLKKSACRYATKTTSLGVEGA--RASAEVLEDQTMAKEARGGRVLRVGLICGG 86
L ++K L +S C ++ G GA S V++ M+K LRVGLICGG
Sbjct: 34 LKLHQKNSLSESTCSFSVMNKYRGSGGAIRTVSKAVVDGDEMSKN------LRVGLICGG 87
Query: 87 PSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL 146
PSAERGISLNSARSVLDHIQGD + V CYYID +L A+AISSAQVYSNTP+DFDFKLESL
Sbjct: 88 PSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESL 147
Query: 147 AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDK 206
AQGF SLS+FAEHL + VDIVFP IHGRFGEDGGIQE+LE N+PFVGTGSR C +AFDK
Sbjct: 148 AQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRECIRAFDK 207
Query: 207 YDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVT 266
Y+ASLE+ + GF+TVP++L+QG+EV++SE++ WF N+LD GKVVVKP +AGSSIGV
Sbjct: 208 YEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKAGSSIGVK 267
Query: 267 VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE 326
VA+GV DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+
Sbjct: 268 VAFGVNDSIKKAIELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSGCHPVVLMPTEVQ 327
Query: 327 LQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDF 386
LQF GS D++E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+F++LGL DF
Sbjct: 328 LQFHGSGDLQE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFKKLGLRDF 386
Query: 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 446
ARIDGW+L ++++ S+SET G E G I+FTDINLISGMEQTSFLFQQASKVGFSHSN
Sbjct: 387 ARIDGWYLAPNSNLSSASET-LGGPESGDIIFTDINLISGMEQTSFLFQQASKVGFSHSN 445
Query: 447 ILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQ 506
ILRT++ ACSRFP+L YN G S + + L +++VFVIFGGDTSERQ
Sbjct: 446 ILRTVVHRACSRFPHLTWYNY------GYSLLLQGSTTLEVSGDVQKVFVIFGGDTSERQ 499
Query: 507 VSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLR 566
VS+MSGTNVW+NLQ F D+ VTPCLL+ S+ SSG N+ + R VW LPYS+VLR
Sbjct: 500 VSVMSGTNVWINLQRFVDLNVTPCLLSPSLGNSSGASLNLDN-----REVWVLPYSVVLR 554
Query: 567 HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINE 626
HT EEVLAAC+EA+EPDRA FTS L+ QV+ DL++GLK SWF GFDI DELP S+ E
Sbjct: 555 HTAEEVLAACLEAVEPDRALFTSLLQKQVMEDLMDGLKNQSWFAGFDITDELPRNFSLKE 614
Query: 627 WIKLAKENQATVFIA------VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
WIK A+E QATVFIA +HGGIGEDGTLQ+LLE EGV YTGPGV+AS+TCMDKV T
Sbjct: 615 WIKHAREAQATVFIAGYRYIFMHGGIGEDGTLQALLEDEGVSYTGPGVLASRTCMDKVMT 674
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
S AL+HL++LG+ TI+KDVRR ED++ I ++W EL SK QC TLCVKPA+DGCSTGVA
Sbjct: 675 SQALSHLSELGIHTISKDVRRTEDIMHETIPNVWDELISKFQCLTLCVKPAKDGCSTGVA 734
Query: 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
RLCC+EDL VYV+AL++CLLRIPPN+ S+ HG IEMPNP PE LIFEPFVETDEI+ SS
Sbjct: 735 RLCCSEDLAVYVQALKDCLLRIPPNTLSKTHGTIEMPNPTPEFLIFEPFVETDEIIVSS- 793
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
K +L WKG RWVE+TVGVIGK GSMHSL PS+TVKESGDILSLEEKFQGGTGIN
Sbjct: 794 ---KVKQQLSWKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGIN 850
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
LTPPP +IMS EAL++CKQRIELIA L LEGFSRIDAFV+V+ GEVL+IEVNTVPGMTP
Sbjct: 851 LTPPPPTIMSKEALERCKQRIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTP 910
Query: 921 STVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
STVLI QAL+EQPPMYP QFFR +L L ++R +
Sbjct: 911 STVLIQQALAEQPPMYPPQFFRTLLHLATQRVI 943
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506463|ref|XP_003623520.1| D-alanine--D-alanine ligase [Medicago truncatula] gi|355498535|gb|AES79738.1| D-alanine--D-alanine ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1275 bits (3300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/848 (73%), Positives = 712/848 (83%), Gaps = 12/848 (1%)
Query: 26 PKVLSRNRKLKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEARG---GRVLRVGL 82
PK L N KL CR AT+++++ ARA+ + + +G GR LRVGL
Sbjct: 34 PKHLELNHKL----ITCR-ATRSSAV----ARATISEVVVVSSGVAEKGKEEGRALRVGL 84
Query: 83 ICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK 142
ICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSNTPADFDFK
Sbjct: 85 ICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAHAISSAQVYSNTPADFDFK 144
Query: 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
LESLAQ F +L++ AEHL+A VDIVFP IHGRFGEDGGIQE+LEKYNVPFVGTGS C Q
Sbjct: 145 LESLAQSFSTLADLAEHLSAAVDIVFPVIHGRFGEDGGIQELLEKYNVPFVGTGSSECCQ 204
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS 262
AFDKY AS E+ K GF+TVPSFL+QG E N+SELS WF ++LDP++GKVVVKPTR GSS
Sbjct: 205 AFDKYKASSELRKHGFVTVPSFLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSS 264
Query: 263 IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322
IGVTVAYGV DSL KA I+ EGIDD+V++ELFLEGGSEFTAIVLDVGS D PV LLP
Sbjct: 265 IGVTVAYGVNDSLVKASEIMSEGIDDKVLIELFLEGGSEFTAIVLDVGSSSDSFPVALLP 324
Query: 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382
TEVELQF G D++E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS+LFQ+L
Sbjct: 325 TEVELQFLGENDLKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASILFQQLH 384
Query: 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 442
L DFARIDGWFLP S SSSE+++G +E GTI+FTDIN+ISGMEQTSFLFQQASKVGF
Sbjct: 385 LQDFARIDGWFLPDSGCKLSSSESEFGRSESGTIIFTDINMISGMEQTSFLFQQASKVGF 444
Query: 443 SHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502
SH+NILR+I+ HAC RFPNLAS + +SS +P RS S+ ++ +REG ++VFVIFGGDT
Sbjct: 445 SHTNILRSIVHHACLRFPNLASVSGISSQIPSRSKSSELNKSFPRREGAQKVFVIFGGDT 504
Query: 503 SERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYS 562
SERQVSLMSGTNVWLNL FND+EVTPCLL+S+ D +S +D I D +R VWSLPYS
Sbjct: 505 SERQVSLMSGTNVWLNLLGFNDLEVTPCLLSSTSDYASSVDIGIKADDVWNRTVWSLPYS 564
Query: 563 LVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRH 622
LVLRHTTEEVL AC+EAIEP+RAA TS LR QV+NDL+EGLK H+WFTGFDIA+ELP +
Sbjct: 565 LVLRHTTEEVLDACVEAIEPNRAALTSDLRKQVMNDLMEGLKDHNWFTGFDIANELPKKF 624
Query: 623 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
S+ EWIKLAKE +ATVFIAVHGGIGEDG LQSLL+AEGVPYTGPG +ASK CMDKVATS+
Sbjct: 625 SLREWIKLAKEVKATVFIAVHGGIGEDGRLQSLLDAEGVPYTGPGALASKICMDKVATSV 684
Query: 683 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
A+NHLA+LG+LTINK+V RK+DL PI DIWH+LT KLQC+TLCVKPARDGCSTGVARL
Sbjct: 685 AVNHLANLGILTINKEVWRKDDLSNKPINDIWHDLTQKLQCETLCVKPARDGCSTGVARL 744
Query: 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
C+ DL +Y+KALE+ LLRIPPNS S+AHGMIEMPNPPPE+LIFEPF+ETDEI+ SS+
Sbjct: 745 RCSNDLAIYIKALEDSLLRIPPNSLSKAHGMIEMPNPPPELLIFEPFIETDEIIVSSKVK 804
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
N+ MWKGNSRWVEITVGVIGK GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLT
Sbjct: 805 NETGHGFMWKGNSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLT 864
Query: 863 PPPASIMS 870
PPP SIMS
Sbjct: 865 PPPLSIMS 872
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 953 | ||||||
| TAIR|locus:2097648 | 937 | AT3G08840 [Arabidopsis thalian | 0.925 | 0.941 | 0.688 | 0.0 | |
| TIGR_CMR|CHY_1346 | 312 | CHY_1346 "D-alanine--D-alanine | 0.156 | 0.477 | 0.367 | 4.8e-25 | |
| UNIPROTKB|P0A6J8 | 364 | ddlA [Escherichia coli K-12 (t | 0.244 | 0.640 | 0.312 | 6.3e-20 | |
| TIGR_CMR|CBU_1338 | 372 | CBU_1338 "D-alanine--D-alanine | 0.246 | 0.631 | 0.252 | 2.2e-18 | |
| TIGR_CMR|GSU_3066 | 316 | GSU_3066 "D-alanine--D-alanine | 0.119 | 0.360 | 0.369 | 4.2e-18 | |
| TIGR_CMR|CPS_4463 | 317 | CPS_4463 "D-alanine--D-alanine | 0.146 | 0.441 | 0.348 | 3.5e-17 | |
| UNIPROTKB|P07862 | 306 | ddlB [Escherichia coli K-12 (t | 0.142 | 0.444 | 0.326 | 3.8e-17 | |
| TIGR_CMR|BA_2610 | 304 | BA_2610 "D-alanine--D-alanine | 0.143 | 0.450 | 0.297 | 2.1e-13 | |
| UNIPROTKB|P95114 | 373 | ddl "D-alanine--D-alanine liga | 0.246 | 0.630 | 0.302 | 1.1e-12 | |
| TIGR_CMR|SPO_1201 | 306 | SPO_1201 "D-alanine--D-alanine | 0.146 | 0.457 | 0.282 | 9.6e-12 |
| TAIR|locus:2097648 AT3G08840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3135 (1108.6 bits), Expect = 0., P = 0.
Identities = 623/905 (68%), Positives = 729/905 (80%)
Query: 51 LGVEGARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQ 106
LG+ R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQ
Sbjct: 50 LGMNKYRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQ 106
Query: 107 GDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDI 166
GD + V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDI
Sbjct: 107 GDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDI 166
Query: 167 VFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226
VFP IHGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+
Sbjct: 167 VFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLV 226
Query: 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI 286
QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGI
Sbjct: 227 QGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGI 286
Query: 287 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 346
DDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRR
Sbjct: 287 DDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRR 345
Query: 347 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 406
KYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S
Sbjct: 346 KYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSE 405
Query: 407 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYN 466
G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+ ACSRFP+L YN
Sbjct: 406 TLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYN 465
Query: 467 SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIE 526
S L GS E E ++VFVIFGGDTSERQVS+MSGTNVW+NLQ + D+
Sbjct: 466 YGYSQL---LQGSTTLEV---SEDPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDLN 519
Query: 527 VTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAA 586
VTPCLL+ S+ S G +N+ +R VW LPYS+VLRHT EEVLAAC+EA+EP RA
Sbjct: 520 VTPCLLSPSLSNSLGASSNL-----DNREVWVLPYSVVLRHTAEEVLAACLEAVEPVRAL 574
Query: 587 FTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGI 646
FTS L+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGI
Sbjct: 575 FTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGI 634
Query: 647 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLL 706
GEDGTLQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++
Sbjct: 635 GEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIM 694
Query: 707 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNS 766
++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+
Sbjct: 695 HETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNT 754
Query: 767 FSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG 826
S+ HGMIEMPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIG
Sbjct: 755 LSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIG 810
Query: 827 KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN 886
K GSMHSL PS+TVKESGDILSLEEKFQGGTGINLTPPP +IMS EAL++CKQ IELIA
Sbjct: 811 KRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMSKEALERCKQGIELIAE 870
Query: 887 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLD 946
L LEGFSRIDAFV+V+ GEVL+IEVNTVPGMTPSTVLI QAL+EQPPMYP QFFR +L
Sbjct: 871 TLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALAEQPPMYPPQFFRTLLH 930
Query: 947 LGSER 951
L ++R
Sbjct: 931 LATQR 935
|
|
| TIGR_CMR|CHY_1346 CHY_1346 "D-alanine--D-alanine ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 61/166 (36%), Positives = 89/166 (53%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
N+D F +HG++GEDG IQ +LE ++P+ G+G A A DK + +G I P
Sbjct: 52 NIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEG-IPTP 110
Query: 223 SFLLQGSEVN---ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
+++ + N E+ S T KL P VV+K R GS+IG+ + L KA
Sbjct: 111 NYIAFSFDENPNFEAISSEILQTLKL-P----VVIKAPREGSTIGIEFVFSK-QELPKAI 164
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV 325
+LE ID +++VE F+EG E TA VL G+ +PVVL E+
Sbjct: 165 KKVLE-IDKQLLVEEFIEG-VEVTASVL--GNS---NPVVLPLIEI 203
|
|
| UNIPROTKB|P0A6J8 ddlA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 80/256 (31%), Positives = 119/256 (46%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G E A N VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 122 VANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLG 179
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ + A + E D +V+VE ++G E V
Sbjct: 180 L---PLFVKPANQGSSVGVSKVTSE-EQYAIAVDLAFE-FDHKVIVEQGIKG-REIECAV 233
Query: 307 L--DVGSGFDCHPVVL 320
L D C +VL
Sbjct: 234 LGNDNPQASTCGEIVL 249
|
|
| TIGR_CMR|CBU_1338 CBU_1338 "D-alanine--D-alanine ligase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 65/257 (25%), Positives = 116/257 (45%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY-SNTP 136
L + ++CGG S E IS+ SA+++++ + L+ +ID Y I +++ +++P
Sbjct: 5 LHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSP 64
Query: 137 ADF--DFKLESLAQGFGSLSEFAEHLAAN-----VDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ + FG ++ + L + D VFP +HG GEDG +Q +LE N
Sbjct: 65 DHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLN 124
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP-N 248
+P+VG ++ +K D + + + G I V + ++ + + LD
Sbjct: 125 LPYVGANVQSSAVCMEK-DLTKTVLRAGGIPVVDW----HTLSPRDATEGVYQRLLDRWG 179
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ ++ VK GSS+ + K K + DDR++VE + G E VL
Sbjct: 180 TSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR--YDDRLMVEPRIRG-REIECAVL- 235
Query: 309 VGSGFDCHPVVLLPTEV 325
G+G P LP E+
Sbjct: 236 -GNGA---PKASLPGEI 248
|
|
| TIGR_CMR|GSU_3066 GSU_3066 "D-alanine--D-alanine ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 51/138 (36%), Positives = 75/138 (54%)
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
D+ +LP + + EWI +A FI +HG GEDGT+Q LLE G+PYTG GV+AS
Sbjct: 47 DVGRDLP-QVLVREWIDVA-------FICLHGRYGEDGTVQGLLELMGIPYTGSGVLASA 98
Query: 673 TCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
M+K+ +A A G LTI + VRR E + P+ + + + VKP
Sbjct: 99 LAMNKI---VAKEVFAARG-LTIAPYRVVRRGETV--DPVAEGFGY--------PVVVKP 144
Query: 731 ARDGCSTGVARLCCAEDL 748
+++G S GV+ + E+L
Sbjct: 145 SQEGSSVGVSIVKSPEEL 162
|
|
| TIGR_CMR|CPS_4463 CPS_4463 "D-alanine--D-alanine ligase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 52/149 (34%), Positives = 78/149 (52%)
Query: 160 LAAN-VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF 218
L +N +D VF +HGR GEDG +Q LE ++P+ G+ + DK + G
Sbjct: 62 LVSNKIDRVFIALHGRGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGI 121
Query: 219 ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKA 278
T P F + VN++E S + N L G+V+VKP GSSIG+ A I L+ A
Sbjct: 122 PTAP-FTV----VNKAEFSTLSLENILADLGGRVMVKPANEGSSIGMAQAK-TIAQLRNA 175
Query: 279 KGIILEGIDDRVVVELFLEGGSEFTAIVL 307
I G D +V++E +++G E+T +L
Sbjct: 176 L-IEAFGFDTQVLLEAWIDG-PEYTVTIL 202
|
|
| UNIPROTKB|P07862 ddlB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 3.8e-17, Sum P(3) = 3.8e-17
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 167 VFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226
VF +HGR GEDG +Q +LE +P+ G+G A + DK + L G P L
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117
Query: 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI 286
+E E LS+ + ++ V+VKP+R GSS+G++ ++L+ A + +
Sbjct: 118 TRAEF-EKGLSDKQLA-EISALGLPVIVKPSREGSSVGMSKVVAE-NALQDALRLAFQH- 173
Query: 287 DDRVVVELFLEGGSEFTAIVL 307
D+ V++E +L G EFT +L
Sbjct: 174 DEEVLIEKWLSG-PEFTVAIL 193
|
|
| TIGR_CMR|BA_2610 BA_2610 "D-alanine--D-alanine ligase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
A ++D +HG++GEDG +Q LE +P+ G+ + DK + + +G I
Sbjct: 50 AKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEG-IE 108
Query: 221 VPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKG 280
P ++ E+ + E N+ ++LD +VVKP GSS+GV + Y D L
Sbjct: 109 TPDWI----ELTKMEDLNF---DELDKLGFPLVVKPNSGGSSVGVKIVYDK-DELISMLE 160
Query: 281 IILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ E D VV+E +++G E T + D
Sbjct: 161 TVFEW-DSEVVIEKYIKG-EEITCSIFD 186
|
|
| UNIPROTKB|P95114 ddl "D-alanine--D-alanine ligase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 178 (67.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 78/258 (30%), Positives = 113/258 (43%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQG---DDLLVRC------YYID 118
M+ R R +RV ++ GG S E IS SA S+L ++ D + V D
Sbjct: 1 MSANDRRDRRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTD 60
Query: 119 RNLNAYAISSA---QVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGR 174
N +A I++ QV S + + + G SL A + +VD+VFP +HG
Sbjct: 61 ANPDALTITNRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGP 120
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
+GEDG IQ +LE VP+VG G A DK ++ G + V ++ + S
Sbjct: 121 YGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADG-LPVGAYAVLRPP--RS 177
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVEL 294
L + + V VKP R GSSIGV+ D L A D +V+VE
Sbjct: 178 TLHR----QECERLGLPVFVKPARGGSSIGVS-RVSSWDQLPAAVARARRH-DPKVIVEA 231
Query: 295 FLEGGSEFTAIVLDVGSG 312
+ G E VL++ G
Sbjct: 232 AISG-RELECGVLEMPDG 248
|
|
| TIGR_CMR|SPO_1201 SPO_1201 "D-alanine--D-alanine ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 44/156 (28%), Positives = 72/156 (46%)
Query: 154 SEFAEHLAANV-DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLE 212
S+ + L A+ D+VF +HGR+GEDG +Q +LE +P+ +G A A DK E
Sbjct: 50 SDLCDRLRASAPDVVFNALHGRWGEDGCVQGLLEWLRIPYTSSGVLASALAMDK-----E 104
Query: 213 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 272
SK+ + G V S+L++ VVKP GSS+GV Y ++
Sbjct: 105 RSKEAYRAA------GLPVAASQLADRAAIEAAHVMQPPYVVKPYNEGSSVGV---Y-IV 154
Query: 273 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
++ + ++VE ++ G T ++ D
Sbjct: 155 TEAANGPPVLAPDLPATLMVEEYVPGRELSTTVLGD 190
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
| 3rd Layer | 6.3.2.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 953 | |||
| PRK01966 | 333 | PRK01966, ddl, D-alanyl-alanine synthetase A; Revi | 7e-41 | |
| TIGR01205 | 315 | TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l | 9e-41 | |
| COG1181 | 317 | COG1181, DdlA, D-alanine-D-alanine ligase and rela | 9e-33 | |
| TIGR01205 | 315 | TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l | 9e-31 | |
| PRK01372 | 304 | PRK01372, ddl, D-alanine--D-alanine ligase; Review | 2e-30 | |
| PRK01966 | 333 | PRK01966, ddl, D-alanyl-alanine synthetase A; Revi | 2e-28 | |
| pfam01820 | 110 | pfam01820, Dala_Dala_lig_N, D-ala D-ala ligase N-t | 1e-27 | |
| PRK01372 | 304 | PRK01372, ddl, D-alanine--D-alanine ligase; Review | 1e-26 | |
| COG1181 | 317 | COG1181, DdlA, D-alanine-D-alanine ligase and rela | 2e-26 | |
| PRK14571 | 299 | PRK14571, PRK14571, D-alanyl-alanine synthetase A; | 2e-22 | |
| PRK14570 | 364 | PRK14570, PRK14570, D-alanyl-alanine synthetase A; | 2e-20 | |
| PRK14572 | 347 | PRK14572, PRK14572, D-alanyl-alanine synthetase A; | 4e-18 | |
| PRK14568 | 343 | PRK14568, vanB, D-alanine--D-lactate ligase; Provi | 3e-15 | |
| PRK14571 | 299 | PRK14571, PRK14571, D-alanyl-alanine synthetase A; | 3e-14 | |
| PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine | 1e-13 | |
| pfam07478 | 201 | pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t | 6e-13 | |
| PRK14568 | 343 | PRK14568, vanB, D-alanine--D-lactate ligase; Provi | 1e-12 | |
| PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine | 2e-12 | |
| PRK14572 | 347 | PRK14572, PRK14572, D-alanyl-alanine synthetase A; | 4e-12 | |
| pfam07478 | 201 | pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t | 2e-10 | |
| pfam01820 | 110 | pfam01820, Dala_Dala_lig_N, D-ala D-ala ligase N-t | 3e-10 | |
| PRK14569 | 296 | PRK14569, PRK14569, D-alanyl-alanine synthetase A; | 2e-07 | |
| COG0458 | 400 | COG0458, CarB, Carbamoylphosphate synthase large s | 6e-05 | |
| PRK14569 | 296 | PRK14569, PRK14569, D-alanyl-alanine synthetase A; | 7e-05 | |
| PRK14568 | 343 | PRK14568, vanB, D-alanine--D-lactate ligase; Provi | 2e-04 | |
| TIGR00877 | 422 | TIGR00877, purD, phosphoribosylamine--glycine liga | 5e-04 | |
| PRK01372 | 304 | PRK01372, ddl, D-alanine--D-alanine ligase; Review | 0.002 | |
| PRK14570 | 364 | PRK14570, PRK14570, D-alanyl-alanine synthetase A; | 0.004 |
| >gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 7e-41
Identities = 104/384 (27%), Positives = 156/384 (40%), Gaps = 62/384 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV L+ GG SAE +SL SA+SVL + + V I ++ + Y
Sbjct: 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKD--------GRWYLIDAD 55
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + + + SL + VD+VFP +HG GEDG IQ +LE +P+VG G
Sbjct: 56 NMELADDDNDKEDLSLLILPSGGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGV 115
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD-PNSGKVVVKP 256
A + DK ++ G P +L + E+ L+ + KL P V VKP
Sbjct: 116 LASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAE--IEAKLGLP----VFVKP 169
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
GSS+G++ + L A L+ D +V+VE ++ G E VL G
Sbjct: 170 ANLGSSVGISKVK-NEEELAAA----LDLAFEYDRKVLVEQGIK-GREIECAVL----GN 219
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
D P +P E+ D ++Y KYL P + IRE
Sbjct: 220 D--PKASVPGEIVKP----------DDFYDYEAKYLD-GSAELIIPADLSEELTEKIREL 266
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF- 432
A F+ LG AR+D +FL TE G I +IN + G S
Sbjct: 267 AIKAFKALGCSGLARVD-FFL----------------TEDGEIYLNEINTMPGFTPISMY 309
Query: 433 -LFQQASKVGFSHSNILRTIIGHA 455
+AS + + ++ +I A
Sbjct: 310 PKLWEASGLSY--PELIDRLIELA 331
|
Length = 333 |
| >gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 9e-41
Identities = 104/376 (27%), Positives = 154/376 (40%), Gaps = 66/376 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG SAE ISL SA +VL ++ D + Y + ++ S T D
Sbjct: 1 RVAVLFGGKSAEHEISLVSAAAVLKALR-----------DLGYDVYPVDIDKMGSWTYKD 49
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ L +D+VFP +HGR+GEDG IQ +LE +P+ G+G
Sbjct: 50 LPQLILELGAL-----------LEGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVL 98
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A + DK L G T +L + + EL V L V+VKP R
Sbjct: 99 ASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPL---GFPVIVKPAR 155
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+GV+ + L+ A E D+ V+VE F++G E +L P+
Sbjct: 156 EGSSVGVSKVKSE-EELQAALDEAFE-YDEEVLVEQFIKGR-ELEVSILGNEEAL---PI 209
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYL--PTQQVAYHTPPRFPIVVINSIREGASL 376
+ + E+E F ++Y KYL T+ Y P + I+E A
Sbjct: 210 IEIVPEIE-GF------------YDYEAKYLDGSTE---YVIPAPLDEELEEKIKELALK 253
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
++ LG AR+D FL E G I +IN I GM S +
Sbjct: 254 AYKALGCRGLARVDF-FL----------------DEEGEIYLNEINTIPGMTAISLFPKA 296
Query: 437 ASKVGFSHSNILRTII 452
A+ G S ++ I+
Sbjct: 297 AAAAGIEFSQLVERIL 312
|
This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315 |
| >gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 9e-33
Identities = 93/377 (24%), Positives = 143/377 (37%), Gaps = 64/377 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL SA++VL ++G V
Sbjct: 4 KVAVLLGGRSAEREVSLLSAKAVLRALKGF-------------------GYDVT-----P 39
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D L + E + + D+VFP +HG +GEDG IQ +LE +P+VG G
Sbjct: 40 VDITEAGL---WMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVL 96
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +G P L E + + V L + VKP R
Sbjct: 97 ASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEE--VEEGLGF---PLFVKPAR 151
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G + V L+ A + + D V+ E + G E VL G D
Sbjct: 152 EGSSVGRSPVN-VEGDLQSALELAFK-YDRDVLREQGIT-GREIEVGVL----GNDYEEQ 204
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
L E+ + + ++Y KYL T Y P + I+E A +
Sbjct: 205 ALPLGEI---------PPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAY 255
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG AR+D +F+ + G + ++N GM S + A+
Sbjct: 256 KALGCLGLARVD-FFVDD---------------DEGEFVLLEVNTNPGMTAMSLFPKAAA 299
Query: 439 KVGFSHSNILRTIIGHA 455
G S + ++ + A
Sbjct: 300 AAGISFAILVLRFVELA 316
|
Length = 317 |
| >gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 9e-31
Identities = 84/331 (25%), Positives = 130/331 (39%), Gaps = 91/331 (27%)
Query: 602 GLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGV 661
+ K +T D+ + + E VF +HG GEDGT+Q LLE G+
Sbjct: 38 DIDKMGSWTYKDLPQLI-------LELGALLEGIDVVFPVLHGRYGEDGTIQGLLELMGI 90
Query: 662 PYTGPGVMASKTCMDKVAT-----SLALNHLADLGVLTINK------DVRRKEDLLKTPI 710
PYTG GV+AS MDK+ T +L L D VLT N+ + + + L P+
Sbjct: 91 PYTGSGVLASALSMDKLLTKLLWKALGLP-TPDYIVLTQNRASADELECEQVAEPLGFPV 149
Query: 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRA 770
+ VKPAR+G S GV++ + AL+E +
Sbjct: 150 I----------------VKPAREGSSVGVSK---VKSEEELQAALDEAF------EYDE- 183
Query: 771 HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS 830
E+L+ E F++ E+ V ++G
Sbjct: 184 -----------EVLV-EQFIKGR-------------------------ELEVSILG---- 202
Query: 831 MHSLMPSV-TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889
+P + V E E K+ G+ + P P + E +K K+ AL
Sbjct: 203 NEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP---LDEELEEKIKELALKAYKALG 259
Query: 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
G +R+D F+ + GE+ + E+NT+PGMT
Sbjct: 260 CRGLARVDFFL-DEEGEIYLNEINTIPGMTA 289
|
This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315 |
| >gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-30
Identities = 83/316 (26%), Positives = 129/316 (40%), Gaps = 86/316 (27%)
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D +++ + L + VF A+HG GEDGT+Q LLE G+PYTG GV+
Sbjct: 40 HPIDPGEDIAAQ--------LKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVL 91
Query: 670 ASKTCMDKVATSLALNHL----ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT 725
AS MDK+ T L VLT +D+ D L P+V
Sbjct: 92 ASALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGLPLV-------------- 137
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
VKPAR+G S GV+++ ++L ALE + E+L+
Sbjct: 138 --VKPAREGSSVGVSKVKEEDELQ---AALELAF----------KYD--------DEVLV 174
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E +++ E+TV V+G +P + + +G+
Sbjct: 175 -EKYIKGR-------------------------ELTVAVLGG-----KALPVIEIVPAGE 203
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDN 904
E K+ G + P + E + Q + L A AL G+ R+D ++ ++
Sbjct: 204 FYDYEAKYLAGGTQYICPAG---LPAEIEAEL-QELALKAYRALGCRGWGRVDFMLD-ED 258
Query: 905 GEVLIIEVNTVPGMTP 920
G+ ++EVNT PGMT
Sbjct: 259 GKPYLLEVNTQPGMTS 274
|
Length = 304 |
| >gnl|CDD|234993 PRK01966, ddl, D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-28
Identities = 75/298 (25%), Positives = 119/298 (39%), Gaps = 92/298 (30%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
VF +HG GEDGT+Q LLE G+PY G GV+AS MDK+ T LA G+
Sbjct: 85 VFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRL---LAAAGIPVAPY 141
Query: 693 LTINK------DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
+ + + + E L P+ VKPA G S G+++ +
Sbjct: 142 VVLTRGDWEEASLAEIEAKLGLPVF----------------VKPANLGSSVGISK---VK 182
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
+ AL+ + + ++L+ E ++
Sbjct: 183 NEEELAAALDL----------AFEYD--------RKVLV-EQGIK--------------- 208
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
R EI V+G + +P VK D E K+ G+ + PA
Sbjct: 209 GR----------EIECAVLGNDP--KASVPGEIVKPD-DFYDYEAKYLDGSAELII--PA 253
Query: 867 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ +E L ++I +A AL G +R+D F+ ++GE+ + E+NT+PG TP
Sbjct: 254 DL--SEEL---TEKIRELAIKAFKALGCSGLARVDFFLT-EDGEIYLNEINTMPGFTP 305
|
Length = 333 |
| >gnl|CDD|216721 pfam01820, Dala_Dala_lig_N, D-ala D-ala ligase N-terminus | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-27
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+R+ ++ GG S+E +SL SAR+VL + + V ID++ S +
Sbjct: 1 MRIAVLFGGRSSEHEVSLKSARAVLKALDKEGYEVIPIDIDKDGRWLLGDSDEDLLAPDD 60
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D ++++ A A VD+VFP +HG FGEDG IQ +LE +P+ G
Sbjct: 61 ALDLEVKAE--------LLAVLAAIKVDVVFPVLHGPFGEDGTIQGLLELLGIPYTG 109
|
This family represents the N-terminal region of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is thought to be involved in substrate binding. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 110 |
| >gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 77/321 (23%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+V ++ GG SAER +SLNS +VL ++ + +A+ I
Sbjct: 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALR-----------EAGYDAHPIDPG------ 45
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ L D VF +HGR GEDG IQ +LE +P+ G+
Sbjct: 46 ----EDIAAQLK-------------ELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGS 88
Query: 196 GSRACRQAFDKYDASLEMSKQGF----ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
G A A DK +K + + P +++ + E +KL
Sbjct: 89 GVLASALAMDK-----LRTKLVWQAAGLPTPPWIV----LTREEDLL-AAIDKLGL---P 135
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+VVKP R GSS+GV+ D L+ A + + DD V+VE +++G E T VL
Sbjct: 136 LVVKPAREGSSVGVSKVKEE-DELQAALELAFK-YDDEVLVEKYIKGR-ELTVAVLG--- 189
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINS 369
L +++ ++Y KYL TQ Y P P +
Sbjct: 190 --G---KAL----------PVIEIVPAGEFYDYEAKYLAGGTQ---YICPAGLPAEIEAE 231
Query: 370 IREGASLLFQRLGLCDFARID 390
++E A ++ LG + R+D
Sbjct: 232 LQELALKAYRALGCRGWGRVD 252
|
Length = 304 |
| >gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 79/303 (26%), Positives = 111/303 (36%), Gaps = 73/303 (24%)
Query: 626 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN 685
E K + VF +HG GEDGT+Q LLE G+PY G GV+AS MDK+ T
Sbjct: 53 EVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFK 112
Query: 686 HL----ADLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 737
A LT ++ V E+ L P+ VKPAR+G S
Sbjct: 113 AEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLF----------------VKPAREGSSV 156
Query: 738 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 797
G + + DL ALE + E + E
Sbjct: 157 GRSPVNVEGDL---QSALEL----------------AFKYDRDVLR---EQGITGRE--- 191
Query: 798 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857
I VGV+G +L + + E K+
Sbjct: 192 ----------------------IEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTG 229
Query: 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
G P + ++ E ++ K+ AL G +R+D FV+ D GE +++EVNT PG
Sbjct: 230 GAQYDIP--AGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPG 287
Query: 918 MTP 920
MT
Sbjct: 288 MTA 290
|
Length = 317 |
| >gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 92/381 (24%), Positives = 144/381 (37%), Gaps = 87/381 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV L+ GG S ER ISL S V + L Y T
Sbjct: 1 MRVALLMGGVSREREISLRSGERVKKAL-------------EKLG---------YEVTVF 38
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D E + L F D+VF +HG FGEDG +Q +L+ + + G+ +
Sbjct: 39 DVD---EDFLKKVDQLKSF--------DVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDA 87
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ FDK + +G + +P F+ + S P VVKP
Sbjct: 88 FSSMICFDKLLTYRFL--KGTVEIPDFVEIKEFMKTS------------PLGYPCVVKPR 133
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGID--DRVVVELFLEGGSEFTAIVLDVGSGFDC 315
R GSSIGV + +S ++ + + E + V+V+ ++ G E T +L+ GF+
Sbjct: 134 REGSSIGVFIC----ESDEEFQHALKEDLPRYGSVIVQEYIP-GREMTVSILETEKGFEV 188
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ +++R K ++Y KY + + P ++E A
Sbjct: 189 LPI--------------LELRPKRRFYDYVAKYT-KGETEFILPAPLNPEEERLVKETAL 233
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F G F R+DG +FS G F +IN + G+ + S L
Sbjct: 234 KAFVEAGCRGFGRVDG--------IFSD----------GRFYFLEINTVPGLTELSDLPA 275
Query: 436 QASKVGFSHSNILRTIIGHAC 456
A G ++ II A
Sbjct: 276 SAKAGGIEFEELVDIIIKSAF 296
|
Length = 299 |
| >gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 2e-20
Identities = 99/395 (25%), Positives = 156/395 (39%), Gaps = 64/395 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E ISL SA + ++ D + +ID+ + + + D
Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLIKRD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL G G F + +D+VFP +HGR GEDG IQ L+ ++P VG G
Sbjct: 67 VLPIVSLIPGCGI---FVNNKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNESELSNWFVTNKLD-PNSGK 251
+ +KY L + VP + L + + + L P
Sbjct: 124 SAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKD------IKEVLGYP---- 173
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
V+VKP GSSIG+ VAY + + + I E D VV+E F+E +++
Sbjct: 174 VIVKPAVLGSSIGINVAY----NENQIEKCIEEAFKYDLTVVIEKFIEAREIECSVI--- 226
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVV 366
G + + P E+ +Q D IF +Y KY +P + ++ P
Sbjct: 227 --GNE-QIKIFTPGEIVVQ----------DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKH 273
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ I+E A L ++ L L ARID + + T G I +IN I G
Sbjct: 274 LLDIKEYAFLTYKNLELRGMARID-FLIEKDT---------------GLIYLNEINTIPG 317
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + G + +++ +I A +
Sbjct: 318 FTDISMFAKMCEHDGLQYKSLVDNLIDLAFQSYIK 352
|
Length = 364 |
| >gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 4e-18
Identities = 89/381 (23%), Positives = 145/381 (38%), Gaps = 48/381 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + + Y S
Sbjct: 3 KIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESG 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+ F LE + G +SE A+ + DI F +HG GEDG IQ L+ +P+
Sbjct: 63 NSEDLF---LEEFQKANG-VSEPADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G+G A A DK A+ + G P F L+ + S KL+
Sbjct: 119 GSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRK---TLLKLESLGFPQF 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
+KP GSS+ + L +I E D +V+ + FL G+E + VL+ G
Sbjct: 176 LKPVEGGSSVSTYKITNA-EQLMTLLALIFES-DSKVMSQSFL-SGTEVSCGVLERYRGG 232
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVINSIR 371
+P+ L TE + F++ KY +Q TP R + ++
Sbjct: 233 KRNPIALPATE----------IVPGGEFFDFESKY---KQGGSEEITPARISDQEMKRVQ 279
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
E A + LG ++R D + H+ + N + GM +TS
Sbjct: 280 ELAIRAHESLGCKGYSRTDFIIVDGEPHILET------------------NTLPGMTETS 321
Query: 432 FLFQQASKVGFSHSNILRTII 452
+ QQA G + + +I
Sbjct: 322 LIPQQAKAAGINMEEVFTDLI 342
|
Length = 347 |
| >gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 95/374 (25%), Positives = 153/374 (40%), Gaps = 81/374 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYS 133
++VG++ GG S E +S+ SA V ++ + I ++ L + + S
Sbjct: 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGS 63
Query: 134 NTPADF--DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
PA D K+ L + E E+ +D+VFP +HG+ GEDG IQ +LE +P
Sbjct: 64 CRPAVLSPDRKVHGLL-----VLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIP 118
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
+VG ++ DK A + G I P+F W VT P++
Sbjct: 119 YVGCDIQSSALCMDKSLAYIVAKNAG-IATPAF--------------WTVTADERPDAAT 163
Query: 252 ----VVVKPTRAGSSIGVTVAY------GVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
V VKP R+GSS GV+ I+S ++ +L I++ VV GSE
Sbjct: 164 LTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVL--IEEAVV-------GSE 214
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHT 358
VL G+G D L+ EV+ +R F ++ P ++
Sbjct: 215 VGCAVL--GNGAD-----LVVGEVD-------QIRLSHGFFRIHQENEPEKGSENSTIIV 260
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P + ++E A +++ LG AR+D FL E GT++
Sbjct: 261 PADISAEERSRVQETAKAIYRALGCRGLARVD-MFL----------------QEDGTVVL 303
Query: 419 TDINLISGMEQTSF 432
++N + G TS+
Sbjct: 304 NEVNTLPGF--TSY 315
|
Length = 343 |
| >gnl|CDD|184751 PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 67/282 (23%), Positives = 103/282 (36%), Gaps = 70/282 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGTLQ++L+ G+ YTG +S C DK+ T L G + I
Sbjct: 57 VFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-----GTVEIPD 111
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V KE + +P+ C VKP R+G S GV C D AL+E
Sbjct: 112 FVEIKEFMKTSPL---------GYPC---VVKPRREGSSIGV--FICESDEEFQ-HALKE 156
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
++P +I + ++ E+ S T K
Sbjct: 157 -----------------DLPRYGS--VIVQEYIPGREMTVSILETEKGF----------- 186
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
++P + ++ K+ G + P P ++ E
Sbjct: 187 ---------------EVLPILELRPKRRFYDYVAKYTKGETEFILPAP---LNPEEERLV 228
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ GF R+D + +G +E+NTVPG+T
Sbjct: 229 KETALKAFVEAGCRGFGRVDGIFS--DGRFYFLEINTVPGLT 268
|
Length = 299 |
| >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-13
Identities = 61/195 (31%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L +GL+CGG S E ISL SA+++ ++ + V + I+R Q T +
Sbjct: 452 LSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINR----------QGLWETVS 501
Query: 138 DFDFKLESLAQGFGSLS-EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
+ +E G LS E A+ LA VD+V P +HG FGEDG +Q LE P+ G
Sbjct: 502 SLETAIEE-DSGKSVLSSEIAQALA-KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPS 559
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW------FVTNKLDPNSG 250
A DK S G VP L L+ W + + ++ S
Sbjct: 560 LAFSAIAMDKVLTKRFASDVGVPVVPYQPLT--------LAGWKREPELCLAHIVEAFSF 611
Query: 251 KVVVKPTRAGSSIGV 265
+ VK GSSIGV
Sbjct: 612 PMFVKTAHLGSSIGV 626
|
Length = 809 |
| >gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 40/203 (19%)
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
V VKP GSS+G++ + L+ A I E D++V++E +E G E VL
Sbjct: 36 VFVKPANLGSSVGISKVTSR-EELQSA---IEEAFQYDNKVLIEEAIE-GREIECAVLGN 90
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
V E+ L ++Y KY+ + P P V
Sbjct: 91 ED-----LEVSPVGEIRLS----------GGFYDYEAKYIDS-SAQIIVPADLPEEVEEQ 134
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I+E A ++ LG ARID +FL TE G I ++N + G
Sbjct: 135 IQELALKAYKALGCRGLARID-FFL----------------TEDGEIYLNEVNTMPGFTS 177
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + + G S+ +++ +I
Sbjct: 178 ISLYPRMWAAAGLSYPDLIDQLI 200
|
This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201 |
| >gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT--- 694
VF +HG +GEDG +Q LLE G+PY G + +S CMDK SLA + G+ T
Sbjct: 94 VFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDK---SLAYIVAKNAGIATPAF 150
Query: 695 --INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ D R L P+ VKPAR G S GV+++ A++L
Sbjct: 151 WTVTADERPDAATLTYPVF----------------VKPARSGSSFGVSKVNSADEL 190
|
Length = 343 |
| >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-12
Identities = 88/341 (25%), Positives = 138/341 (40%), Gaps = 83/341 (24%)
Query: 601 EGLKKHSWFTGFDI---ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLE 657
+GL W T + +E + ++ I A V +HG GEDGT+Q LE
Sbjct: 494 QGL----WETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGEDGTMQGFLE 549
Query: 658 AEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV-------LTINKDVRRKEDLLKTPI 710
G PYTGP + S MDKV T +D+GV LT+ +R+ +L I
Sbjct: 550 IIGKPYTGPSLAFSAIAMDKVLTK---RFASDVGVPVVPYQPLTL-AGWKREPELCLAHI 605
Query: 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRA 770
V+ + + VK A G S GV +
Sbjct: 606 VEAF--------SFPMFVKTAHLGSSIGVFEV---------------------------- 629
Query: 771 HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS 830
H + E+ + I E F+ ++ F +S RL SR EI V +G S
Sbjct: 630 HNVEELRDK-----ISEAFLYDTDV-FVEES------RL----GSR--EIEVSCLGDGSS 671
Query: 831 MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI-----MSTEALDKCKQRIELIA 885
+ + + SG + +EK+ G +G + A I +S E+ ++ + E I
Sbjct: 672 AYVIAGPHERRGSGGFIDYQEKY-GLSGKS----SAQIVFDLDLSKESQEQVLELAERIY 726
Query: 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
LQ +G RID F++ + G + E+N +PGMT ++ +
Sbjct: 727 RLLQGKGSCRIDFFLD-EEGNFWLSEMNPIPGMTEASPFLT 766
|
Length = 809 |
| >gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 69/320 (21%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E + ++E +++ + F+ +HGG GEDG +Q L+ G+PYTG GV+
Sbjct: 70 EEFQKANGVSEPADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVL------ 123
Query: 676 DKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV--KPAR 732
A++LA++ A+ L + V +L K ++ + KL+ KP
Sbjct: 124 ---ASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKPVE 180
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S ++ AE L + LIFE +
Sbjct: 181 GGSSVSTYKITNAEQLMTLLA------------------------------LIFE----S 206
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSL 849
D ++M + E++ GV+ + G + + +P+ + G+
Sbjct: 207 D-------------SKVMSQSFLSGTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDF 253
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEVL 908
E K++ G +TP S + + Q + + A+ +L +G+SR D F+ VD GE
Sbjct: 254 ESKYKQGGSEEITPARISDQEMKRV----QELAIRAHESLGCKGYSRTD-FIIVD-GEPH 307
Query: 909 IIEVNTVPGMTPSTVLIHQA 928
I+E NT+PGMT ++++ QA
Sbjct: 308 ILETNTLPGMTETSLIPQQA 327
|
Length = 347 |
| >gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 61/197 (30%)
Query: 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787
VKPA G S G++++ E+L A+EE +F + ++LI E
Sbjct: 38 VKPANLGSSVGISKVTSREELQ---SAIEE--------AFQYDN----------KVLI-E 75
Query: 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKES 843
+E EI V+G + + + S
Sbjct: 76 EAIEGREI-------------------------ECAVLGNEDLEVSPVGEIRLS------ 104
Query: 844 GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD 903
G E K+ + + P + E ++ ++ AL G +RID F+ +
Sbjct: 105 GGFYDYEAKYIDSSAQIIVPAD---LPEEVEEQIQELALKAYKALGCRGLARIDFFLT-E 160
Query: 904 NGEVLIIEVNTVPGMTP 920
+GE+ + EVNT+PG T
Sbjct: 161 DGEIYLNEVNTMPGFTS 177
|
This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 201 |
| >gnl|CDD|216721 pfam01820, Dala_Dala_lig_N, D-ala D-ala ligase N-terminus | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGP 666
VF +HG GEDGT+Q LLE G+PYTG
Sbjct: 82 VFPVLHGPFGEDGTIQGLLELLGIPYTGS 110
|
This family represents the N-terminal region of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is thought to be involved in substrate binding. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF). Length = 110 |
| >gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 64/307 (20%), Positives = 118/307 (38%), Gaps = 79/307 (25%)
Query: 628 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNH 686
KL + F+A+HG GE+G + +LLE + +T + +S MDK ++ + ++H
Sbjct: 50 AKLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHH 109
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
+ D ED + P+ VKP+ G S
Sbjct: 110 RMPTPMAKFLTDKLVAEDEISFPVA----------------VKPSSGGSSIA-------- 145
Query: 747 DLTVYVKALEECLLRIPPNSFSRA--HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
T VK+++E +++ A +G E++ T K
Sbjct: 146 --TFKVKSIQEL-----KHAYEEASKYG---------------------EVMIEQWVTGK 177
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
EITV ++ + SV ++ + E K+ G + +
Sbjct: 178 --------------EITVAIVN-----DEVYSSVWIEPQNEFYDYESKYSGKS---IYHS 215
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
P+ + + L+ +Q + + L G +R+D F+ D G I+E+N+ PGMT +++
Sbjct: 216 PSGLCEQKELE-VRQLAKKAYDLLGCSGHARVD-FIYDDRGNFYIMEINSSPGMTDNSLS 273
Query: 925 IHQALSE 931
A +E
Sbjct: 274 PKSAAAE 280
|
Length = 296 |
| >gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Query: 155 EFAEHLAA--NVDIVFPTIHGRFGEDGGIQ----EVLEKYNVPFVGTGSRACRQAFDKYD 208
E E + D + PT+ G+ + ++ VLEKY V VG+ A A DK
Sbjct: 60 EPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKL 119
Query: 209 ASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA 268
M + G I VPS + V E++ D V+VKP+ G +A
Sbjct: 120 FKEAMREIG-IPVPSRI--AHSVEEAD-------EIADEIGYPVIVKPSFGLGGSGGGIA 169
Query: 269 YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG---FDCHPVVLLPTEV 325
Y + + + + + V++E + G EF V+ G C+ L P V
Sbjct: 170 YNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGV 229
Query: 326 E 326
Sbjct: 230 H 230
|
Length = 400 |
| >gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 81/383 (21%), Positives = 142/383 (37%), Gaps = 98/383 (25%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG S ER +SL S ++VLD + I + +A + ++ +
Sbjct: 5 KIVVLYGGDSPEREVSLKSGKAVLDSL-----------ISQGYDAVGVDASG------KE 47
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
KL L D F +HG GE+G + +LE + + +
Sbjct: 48 LVAKL----------------LELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMK 91
Query: 199 ACRQAFDKYDASLEMSKQGFI--TVPSFLLQGSEVNESELSNWFVTNKL---DPNSGKVV 253
+ DK +SK+ + +P+ + + F+T+KL D S V
Sbjct: 92 SSVITMDKM-----ISKEILMHHRMPTPMAK------------FLTDKLVAEDEISFPVA 134
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID-DRVVVELFLEGGSEFTAIVLDVGSG 312
VKP+ GSSI A + S+++ K E V++E ++ G AIV D
Sbjct: 135 VKPSSGGSSI----ATFKVKSIQELKHAYEEASKYGEVMIEQWVTGKEITVAIVND---- 186
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ SV + ++ ++Y KY + + YH+P +R+
Sbjct: 187 ---------------EVYSSVWIEPQNEFYDYESKY--SGKSIYHSPSGLCEQKELEVRQ 229
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A + LG AR+D + + G +IN GM S
Sbjct: 230 LAKKAYDLLGCSGHARVD-----------------FIYDDRGNFYIMEINSSPGMTDNSL 272
Query: 433 LFQQASKVGFSHSNILRTIIGHA 455
+ A+ G + ++ II A
Sbjct: 273 SPKSAAAEGVDFDSFVKRIIEQA 295
|
Length = 296 |
| >gnl|CDD|184750 PRK14568, vanB, D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA I S E + ++ + I AL G +R+D F+ ++G V++ EVNT+PG T
Sbjct: 261 PADI-SAEERSRVQETAKAIYRALGCRGLARVDMFLQ-EDGTVVLNEVNTLPGFT 313
|
Length = 343 |
| >gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
G+ + LE+ +P G A + K A M + G +P+ + + E +
Sbjct: 79 GLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYG---IPT--AEYEVFTDPEEAKS 133
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD---RVVVELFL 296
++ K P +VVK + GV VA +++K + I+ + D RVV+E FL
Sbjct: 134 YIQEKGAP----IVVKADGLAAGKGVIVAKTNEEAIKAVEDILEQKFGDAGERVVIEEFL 189
Query: 297 EGGSEFTAIVL 307
+ G EF+ +
Sbjct: 190 D-GEEFSLLAF 199
|
Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 422 |
| >gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTP 529
V V+ GG ++ER+VSL SG V L+ + P
Sbjct: 7 VAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHP 41
|
Length = 304 |
| >gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA + + LD K+ L L+L G +RID + D G + + E+NT+PG T
Sbjct: 266 PAHLDTKHLLD-IKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEINTIPGFT 319
|
Length = 364 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 100.0 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 100.0 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 100.0 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 100.0 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 100.0 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 100.0 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 100.0 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 100.0 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 100.0 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 100.0 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 100.0 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 100.0 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 100.0 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 100.0 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 100.0 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 100.0 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 100.0 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 100.0 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 100.0 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 100.0 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 99.97 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 99.97 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 99.97 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 99.97 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 99.97 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 99.97 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.97 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.97 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.97 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 99.96 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.96 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.96 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 99.96 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 99.96 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 99.96 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 99.96 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 99.95 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 99.95 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 99.95 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 99.95 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.94 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 99.94 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 99.94 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 99.94 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 99.94 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 99.94 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 99.94 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 99.93 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 99.93 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 99.93 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 99.93 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 99.93 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 99.93 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 99.93 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 99.92 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.92 | |
| PF01820 | 117 | Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; In | 99.92 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 99.92 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 99.91 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 99.91 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.91 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 99.91 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 99.91 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 99.91 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 99.91 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 99.91 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.9 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.9 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 99.9 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 99.9 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 99.9 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 99.9 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 99.89 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 99.89 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.89 | |
| PF01820 | 117 | Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; In | 99.89 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 99.89 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 99.89 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 99.88 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 99.88 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 99.88 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 99.87 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 99.87 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.87 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.86 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 99.86 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 99.86 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 99.85 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.85 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 99.84 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 99.84 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 99.84 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 99.84 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 99.83 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 99.83 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 99.82 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.81 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 99.81 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 99.81 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 99.8 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.8 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.79 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 99.77 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 99.76 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.76 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.75 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 99.75 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 99.74 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 99.7 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 99.7 | |
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 99.7 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.69 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 99.69 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.69 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.69 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.68 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.68 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 99.68 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 99.68 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.67 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.67 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.67 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 99.65 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 99.65 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.65 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.63 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.63 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.63 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 99.62 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.62 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.62 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 99.61 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.61 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 99.61 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.61 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.6 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.6 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 99.59 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.58 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.58 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 99.57 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 99.57 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.55 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.53 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.52 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 99.51 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 99.5 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 99.5 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 99.47 | |
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 99.42 | |
| KOG0237 | 788 | consensus Glycinamide ribonucleotide synthetase (G | 99.39 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 99.24 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.24 | |
| KOG0237 | 788 | consensus Glycinamide ribonucleotide synthetase (G | 99.23 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 99.21 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.19 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 99.19 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.17 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 99.1 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 98.84 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.68 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.66 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 98.66 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 98.57 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 98.57 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 98.54 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.54 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.48 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 98.36 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 98.3 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 97.96 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 97.89 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 97.86 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 97.8 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 97.73 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 97.71 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 97.6 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 97.56 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 97.55 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 97.49 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 97.27 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 97.08 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 96.98 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 96.95 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 96.93 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 96.92 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 96.89 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 96.88 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 96.41 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 96.38 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 96.07 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 96.04 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 95.84 | |
| KOG2156 | 662 | consensus Tubulin-tyrosine ligase-related protein | 94.56 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 93.85 | |
| KOG2156 | 662 | consensus Tubulin-tyrosine ligase-related protein | 93.44 | |
| KOG1057 | 1018 | consensus Arp2/3 complex-interacting protein VIP1/ | 91.88 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 91.75 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 89.51 | |
| KOG2157 | 497 | consensus Predicted tubulin-tyrosine ligase [Postt | 88.58 | |
| KOG2157 | 497 | consensus Predicted tubulin-tyrosine ligase [Postt | 87.22 | |
| TIGR02049 | 403 | gshA_ferroox glutamate--cysteine ligase, T. ferroo | 86.81 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 85.15 | |
| KOG1057 | 1018 | consensus Arp2/3 complex-interacting protein VIP1/ | 82.67 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 81.24 | |
| PRK05849 | 783 | hypothetical protein; Provisional | 80.54 |
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=551.89 Aligned_cols=344 Identities=26% Similarity=0.371 Sum_probs=275.1
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHh-hcCCCEEEEEEEecC-CceeeecccccccCCCCCccccccccccccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRN-LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL-~~~g~~V~~i~id~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
++||+|||||.|+||||||.||++|+++| ++.+|+|++++|+++ |.|+..+...........-........... .
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 78 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLIKRDVLPIVSLIPGC---G 78 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCccccccccccccccccccccccc---c
Confidence 56999999999999999999999999999 689999999999999 999865321100000000000000000000 0
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc--c
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV--N 232 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~--~ 232 (953)
.+......++|+|||++||.+||||++|++||.+||||+||++.++++||||..+|++|+++|||||++..+...+. .
T Consensus 79 ~~~~~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 79 IFVNNKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred ccccCcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccc
Confidence 00001112699999999999999999999999999999999999999999999999999999999999988865321 1
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
..++...+. ..++||+||||+++|||+||++|++.+|+..++..++ .+++.+|||+||+| +|++|+|+++
T Consensus 159 ~~~~~~~~~----~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~--~~~~~vlVEefI~G-rEi~v~Vlg~--- 228 (364)
T PRK14570 159 KEGIKKDIK----EVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAF--KYDLTVVIEKFIEA-REIECSVIGN--- 228 (364)
T ss_pred hHHHHHHHH----HhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHH--hCCCCEEEECCcCC-EEEEEEEECC---
Confidence 111111111 1368899999999999999999999999887777665 36788999999997 9999999952
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccC--CCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~--~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
..+.+++++|+... ...||||++||.. +....+.+|+++++++.++|+++|.+++++|||+|++|||
T Consensus 229 --~~~~v~~~~Ei~~~---------~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvD 297 (364)
T PRK14570 229 --EQIKIFTPGEIVVQ---------DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARID 297 (364)
T ss_pred --CCceEeeeEEEEeC---------CCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 23567888887642 3469999999963 3323577899999999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCC
Q 002207 391 GWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~ 461 (953)
|++ ++ +|++||+||||+||||++|+||++|+++|++|.+|+++||+.|++|+..
T Consensus 298 f~l-----------------~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r~~~ 352 (364)
T PRK14570 298 FLI-----------------EKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAFQSYIK 352 (364)
T ss_pred EEE-----------------ECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 987 44 5889999999999999999999999999999999999999999998753
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=579.35 Aligned_cols=633 Identities=15% Similarity=0.171 Sum_probs=438.3
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||.+|. ++|||+| |.+++++|++.||+|+.++.+++ ....++. .+|. .++.+....
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~S---G~q~~kaLke~G~~Vi~vd~np~--t~~~~~~------~aD~-~yi~p~~~e-- 88 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYS---GTQACKALKEEGYEVVLINSNPA--TIMTDPE------TADR-TYIAPMTPE-- 88 (1102)
T ss_pred CCEEEEECCCccccccceeecch---HHHHHHHHHHcCCEEEEEeCCcc--cccCChh------hCcE-EEeCCCCHH--
Confidence 36999999875 8999975 99999999999999998775442 1111110 1111 122222111
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..++ ..+++|+|||.+||..|+++.+ +++|+.+||||+|+++.++++|+||..+|++|+++|+|+|++..+.
T Consensus 89 ~v~~ii--~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~ 166 (1102)
T PLN02735 89 LVEQVI--AKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIAT 166 (1102)
T ss_pred HHHHHH--HHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeC
Confidence 011111 2458999999999999999876 7899999999999999999999999999999999999999999887
Q ss_pred CCccchhhhhhhhhhcCCCCCC-CcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNS-GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~V 306 (953)
+.+. +.++.+ .++ ||+||||+.+++|.|+.+|+|.+|+.+.+.+.+...+++++|||+||.|++|++|.|
T Consensus 167 s~ee----a~~~~~-----~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~V 237 (1102)
T PLN02735 167 TLDE----CFEIAE-----DIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEV 237 (1102)
T ss_pred CHHH----HHHHHH-----HhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEE
Confidence 5432 223332 255 899999999999999999999999888777666556788999999999889999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCC-C
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGL-C 384 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~-~ 384 (953)
+++..++ .+.+++.| ++++...+. +. +...+|++ +++++.++|+++|.+++++||+ .
T Consensus 238 l~D~~g~---~i~v~~ie----------------~~dp~gvh~-G~-s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~ 296 (1102)
T PLN02735 238 MRDLADN---VVIICSIE----------------NIDPMGVHT-GD-SITVAPAQTLTDKEYQRLRDYSVAIIREIGVEC 296 (1102)
T ss_pred EEcCCCC---EEEEeeEE----------------EEcCCcccc-CC-EEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 9754332 33333322 223333332 32 56668984 9999999999999999999999 5
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh------
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR------ 458 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r------ 458 (953)
|++||||+++ .++|++||+||||+++ .+| +...+++|+++.++..++ |+..
T Consensus 297 G~~nVqf~l~----------------~~~g~~~ViEVNPR~s--~ss--~l~s~atG~~~a~~~~kl---alG~~l~~~~ 353 (1102)
T PLN02735 297 GGSNVQFAVN----------------PVDGEVMIIEMNPRVS--RSS--ALASKATGFPIAKMAAKL---SVGYTLDQIP 353 (1102)
T ss_pred CceEEEEEEE----------------CCCCcEEEEEecCCCC--Ccc--hhhhhhhCCCHHHHHHHH---HCCCChhhhc
Confidence 9999999872 1478999999998776 333 223344566554443222 1111
Q ss_pred ----------C-CCC--------CCCCCc-----------------ceec------------------------------
Q 002207 459 ----------F-PNL--------ASYNSV-----------------SSHL------------------------------ 472 (953)
Q Consensus 459 ----------~-~~~--------~~~~~~-----------------~~~~------------------------------ 472 (953)
| |.+ +|+|+. .|+|
T Consensus 354 ~~~~~~~~a~~ep~~d~~~~k~p~~~f~~f~~~~~~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~~~~~~~~~~~~~~~ 433 (1102)
T PLN02735 354 NDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTFQESFQKALRSLETGFSGWGCAKVKEL 433 (1102)
T ss_pred cccccccchheeecCCcEEEEcccCCcccccCCCcccceeeeecceEEEecCCHHHHHHHHHHHhcCCCCCCCccccccc
Confidence 0 000 222210 0111
Q ss_pred -------------------------------------------------------cccccc--CC---Cc----------
Q 002207 473 -------------------------------------------------------PGRSSG--SK---PT---------- 482 (953)
Q Consensus 473 -------------------------------------------------------~~~~~~--~~---~~---------- 482 (953)
++++.. .+ ..
T Consensus 434 ~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~id~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~ 513 (1102)
T PLN02735 434 DWDWEQLKYKLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRSLSELSKDDFYEVKRRGF 513 (1102)
T ss_pred cCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHcCC
Confidence 001100 00 00
Q ss_pred ----------------------------------------------------cccccCCCceEEEEecCCC-----cccc
Q 002207 483 ----------------------------------------------------EALNKREGIREVFVIFGGD-----TSER 505 (953)
Q Consensus 483 ----------------------------------------------------~~~~~~~~~~~v~vl~GG~-----s~E~ 505 (953)
++......++||.||-+|. +.|.
T Consensus 514 ~d~~ia~~~~~~~~~v~~~r~~~~~~~~~k~vd~~a~ef~~~t~y~y~ty~~~~~~~~~~~kkvlilG~G~~~igq~ief 593 (1102)
T PLN02735 514 SDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSSYDGECESAPTNKKKVLILGGGPNRIGQGIEF 593 (1102)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHCCCEeEEEeeCCCccccCCCCCcceeECCCCCCcccCCCceEEEeCccccccCccccc
Confidence 1111123567888887753 5788
Q ss_pred eeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCcccc
Q 002207 506 QVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRA 585 (953)
Q Consensus 506 ~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (953)
|.++..+. .+|+. .+|+++.|+-+|+.- +. ..+..+..+..
T Consensus 594 d~~~v~~~---~alr~-~G~~tI~v~~npetv--st-------d~~~aD~~y~~-------------------------- 634 (1102)
T PLN02735 594 DYCCCHAS---FALQD-AGYETIMMNSNPETV--ST-------DYDTSDRLYFE-------------------------- 634 (1102)
T ss_pred ceeHHHHH---HHHHH-cCCeEEEEeCCCccc--cC-------CcccCCeEEEE--------------------------
Confidence 88877664 66664 688888776666420 00 00011112211
Q ss_pred ccccccccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCc--cHHHHHHHH----
Q 002207 586 AFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGED--GTLQSLLEA---- 658 (953)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEd--g~iq~llE~---- 658 (953)
+++.+++++. .++.+|.|++.+.|...-. ..+...|+.
T Consensus 635 -----------------------------------pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 635 -----------------------------------PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred -----------------------------------eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 1223333333 3467899998886654321 122333332
Q ss_pred -----cCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC
Q 002207 659 -----EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733 (953)
Q Consensus 659 -----~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~ 733 (953)
.|+++.|+++.+..+|+||..+|++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.+
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~---l~~~GIp~p~~~~v~s~e--------ea~~~a~~i-GyPvvVKP~~g 747 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAI---LNELKIEQPKGGIARSEA--------DALAIAKRI-GYPVVVRPSYV 747 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeeEeCCHH--------HHHHHHHhc-CCCeEEEeCCC
Confidence 3899999999999999999999999 999999999998876432 234456788 69999999999
Q ss_pred CCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcC
Q 002207 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813 (953)
Q Consensus 734 gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g 813 (953)
++|.|+.+|++.+||.. +++.+++.. .+.++|||+||++.
T Consensus 748 ~gG~G~~iV~~~eeL~~---al~~a~~~~-----------------~~~~vlVEefI~~g-------------------- 787 (1102)
T PLN02735 748 LGGRAMEIVYSDDKLKT---YLETAVEVD-----------------PERPVLVDKYLSDA-------------------- 787 (1102)
T ss_pred CCCCcEEEECCHHHHHH---HHHHHHHhc-----------------CCCCEEEEEecCCc--------------------
Confidence 99999999999999886 566665441 14579999999842
Q ss_pred CCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcce
Q 002207 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGF 893 (953)
Q Consensus 814 ~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ 893 (953)
+|++|.++++....+.+.+.++... +.+++.|.+...+|++ .+++++.+++++.+.+++++|++.|+
T Consensus 788 ----~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~--~L~~e~~~~i~~~a~ki~~~L~~~G~ 854 (1102)
T PLN02735 788 ----TEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQ--TIPSSCLATIRDWTTKLAKRLNVCGL 854 (1102)
T ss_pred ----EEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCC--CCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 4999999987533333344444332 3445666666677764 37899999999999999999999999
Q ss_pred EEEEEEEEcCCCcEEEEeeCCCCCC
Q 002207 894 SRIDAFVNVDNGEVLIIEVNTVPGM 918 (953)
Q Consensus 894 ariDf~v~~~~g~~~viEINt~PGl 918 (953)
.+|||+++. +|++|||||||+|+-
T Consensus 855 ~~vqf~v~~-dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 855 MNCQYAITP-SGEVYIIEANPRASR 878 (1102)
T ss_pred eeEEEEEcC-CCcEEEEEEeCCCCc
Confidence 999999974 689999999999973
|
|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=529.69 Aligned_cols=344 Identities=23% Similarity=0.338 Sum_probs=267.3
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecc-cccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASS-IDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
++||+|||||.|+||||||.||++|+.+|++..+|+|+||+|+++ |.|+..... ..+.
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~----------~~~~----------- 60 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSV----------PDPP----------- 60 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCcc----------cccc-----------
Confidence 579999999999999999999999999994457999999999998 777643110 0000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
. ..........+ + .....++ .......+|+|||++||.+|||
T Consensus 61 -~-------~~~~~~~~~~~---------~---~~~~~~~------------------~~~~~~~~D~vf~~lhG~~GEd 102 (364)
T PRK14570 61 -K-------LIKRDVLPIVS---------L---IPGCGIF------------------VNNKNLEIDVVFPIVHGRTGED 102 (364)
T ss_pred -c-------ccccccccccc---------c---ccccccc------------------ccCcCcCCCEEEEcCCCCCCCc
Confidence 0 00000000000 0 0000000 0001124799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|+||++||++||||+||++.++++||||..||++ |+++|||||+|..+...++.. +..+..+.+...+ +||+|||
T Consensus 103 g~iqglle~~giPy~Gs~~~asal~~DK~~tK~~---l~~~GIpt~p~~~~~~~~~~~-~~~~~~~~~~~~l-g~PviVK 177 (364)
T PRK14570 103 GAIQGFLKVMDIPCVGAGILGSAISINKYFCKLL---LKSFNIPLVPFIGFRKYDYFL-DKEGIKKDIKEVL-GYPVIVK 177 (364)
T ss_pred CHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHcCCCCCCEEEEecccccc-chHHHHHHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 999999999998887643221 1122233444678 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++|||.||++|++.+||.. +++.++++ ++.+|||+||+|+
T Consensus 178 P~~~GsS~Gv~~v~~~~el~~---al~~a~~~-------------------~~~vlVEefI~Gr---------------- 219 (364)
T PRK14570 178 PAVLGSSIGINVAYNENQIEK---CIEEAFKY-------------------DLTVVIEKFIEAR---------------- 219 (364)
T ss_pred eCCCCCCCcEEEeCCHHHHHH---HHHHHHhC-------------------CCCEEEECCcCCE----------------
Confidence 999999999999999999885 78888765 5779999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecC-Ccccccccccc--CCCc-eeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQ--GGTG-INLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~-~~~~d~~~Ky~--~g~~-~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|+|+++.. .. +.|..++... ..||||++||. .+.+ ...+|++ +++++.++|+++|.+++
T Consensus 220 ---------Ei~v~Vlg~~~-~~-v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~---l~~e~~~~i~~~A~~~~ 285 (364)
T PRK14570 220 ---------EIECSVIGNEQ-IK-IFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH---LDTKHLLDIKEYAFLTY 285 (364)
T ss_pred ---------EEEEEEECCCC-ce-EeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC---CCHHHHHHHHHHHHHHH
Confidence 99999998753 22 3444555543 36999999995 3443 4567877 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
++|||+|++|||||++.++|++|||||||+||||+.|.++++|.+++ ..| .+|+++||++|++|+
T Consensus 286 ~aLg~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G-~~~-~~li~~li~~a~~r~ 350 (364)
T PRK14570 286 KNLELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDG-LQY-KSLVDNLIDLAFQSY 350 (364)
T ss_pred HHhCCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcC-CCH-HHHHHHHHHHHHHHH
Confidence 99999999999999985458999999999999999999888888774 455 699999999999886
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=522.72 Aligned_cols=335 Identities=23% Similarity=0.324 Sum_probs=266.7
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 154 (953)
+|||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+...............+.+.. ..+....
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLVLE 82 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccccC
Confidence 57999999999999999999999999999999999999999999999864321000000000000000000 0000000
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
. ......++|+|||++||.+||||++|++||.+|+||+||++.++++||||..+|++|+++|||||+++.+...+.
T Consensus 83 ~-~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~~--- 158 (343)
T PRK14568 83 Q-GEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADER--- 158 (343)
T ss_pred c-cccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCch---
Confidence 0 000113699999999999999999999999999999999999999999999999999999999999998865431
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
... ..++||+||||+++|||+||++|++.+|+.++...++ .+++++|||+||+| +|++|.+++++
T Consensus 159 -~~~-------~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~--~~~~~vlVEe~I~G-~E~sv~vl~~~---- 223 (343)
T PRK14568 159 -PDA-------ATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESAR--QYDSKVLIEEAVVG-SEVGCAVLGNG---- 223 (343)
T ss_pred -hhh-------hhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEEECCcCC-EEEEEEEEcCC----
Confidence 110 2367999999999999999999999999887766554 36789999999998 99999999532
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccC---CCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~---~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
....+..+.++.. .++||+|..||.. ...+.+.+|+++++++.++|+++|.+++++|||+|++||||
T Consensus 224 ~~~~~~~~~~i~~----------~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf 293 (343)
T PRK14568 224 ADLVVGEVDQIRL----------SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDM 293 (343)
T ss_pred CCcceecceEEec----------CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1223333344432 3469999988863 22245778999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++|++||+||||+||||++|+||++|+++|++|++|+++||+.|++
T Consensus 294 ~l-----------------~~~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~li~~a~~ 342 (343)
T PRK14568 294 FL-----------------QEDGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDRLVSLALT 342 (343)
T ss_pred EE-----------------eCCCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 87 67899999999999999999999999999999999999999999874
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=517.25 Aligned_cols=328 Identities=29% Similarity=0.401 Sum_probs=271.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|||||.|+||||||.||++|+++|++.||+|++++++++|.|+..+........+ ..... .+.. .
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~----~~~~---~ 72 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADD---DNDKE----DLSL---L 72 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhcccc---ccccc----ccch---h
Confidence 579999999999999999999999999999999999999999999998643210000000 00000 0000 0
Q ss_pred HHhhcc--CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 157 AEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 157 ~~~~~~--~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
...... ++|+|||++||.+||||.+|++||.+||||+|+++.++++|+||..+|++|+++|||+|++..+...+....
T Consensus 73 ~~~~~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 73 ILPSGGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred ccccccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccccchh
Confidence 000011 699999999999999999999999999999999999999999999999999999999999998876543101
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
.+..+. +.++||+||||+++|||+||++|++.+|+.+++.+.+ .+++.+|||+||+| +|++|.++++ +
T Consensus 153 ~~~~~~-----~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEefI~G-~E~~v~vl~~----~ 220 (333)
T PRK01966 153 SLAEIE-----AKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAF--EYDRKVLVEQGIKG-REIECAVLGN----D 220 (333)
T ss_pred hHHHHH-----HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH--hcCCcEEEEcCcCC-EEEEEEEECC----C
Confidence 112222 2368899999999999999999999999887777665 36789999999998 9999999952 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
..+++++|+.. ...||||.+||..+. +.+.+|+.+++++.++++++|.+++++|||+|++||||++
T Consensus 221 --~~~~~~~ei~~----------~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~- 286 (333)
T PRK01966 221 --PKASVPGEIVK----------PDDFYDYEAKYLDGS-AELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFL- 286 (333)
T ss_pred --CeEcccEEEec----------CCceEcHHHccCCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE-
Confidence 23667777653 236999999998654 6678999999999999999999999999999999999987
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHh
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~ 456 (953)
+++|++||+||||+||||++|+||++++++|++|.+|+++||+.|+
T Consensus 287 ----------------~~~g~~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~ii~~a~ 332 (333)
T PRK01966 287 ----------------TEDGEIYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRLIELAL 332 (333)
T ss_pred ----------------cCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999986
|
|
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=517.54 Aligned_cols=341 Identities=23% Similarity=0.287 Sum_probs=270.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccc-cccC-CCCC-ccccccccccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSN-TPAD-FDFKLESLAQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~ 154 (953)
+||+|||||.|+|||||+.||++|+++|++.||+|.+++++.+|.|+...... .+.. ...+ ..+ ........ ...
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 79 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLF-LEEFQKAN-GVS 79 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeeccccccccccccccccccc-cccccccc-ccc
Confidence 58999999999999999999999999999999999999999999887422110 0000 0000 000 00000000 000
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccc--
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN-- 232 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~-- 232 (953)
.........+|++|+++||.+||||++|++||.+||||+|+++.++++|+||..||++|+++|||||+++.+.+.+..
T Consensus 80 ~~~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~ 159 (347)
T PRK14572 80 EPADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNS 159 (347)
T ss_pred ccccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccC
Confidence 000001236999999999999999999999999999999999999999999999999999999999999988654321
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
........ +.++||+||||+++|||+||++|++.+|+..++..++. +++.+|||+||+| +|++|.|+++..+
T Consensus 160 ~~~~~~~~-----~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~--~~~~vlVEefI~G-~E~sv~vi~~~~~ 231 (347)
T PRK14572 160 PRKTLLKL-----ESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE--SDSKVMSQSFLSG-TEVSCGVLERYRG 231 (347)
T ss_pred hHHHHHHH-----HhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCCEEEEcCccc-EEEEEEEEeCccC
Confidence 11111111 23689999999999999999999999998877766553 6778999999998 9999999964222
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
+...++++++.|+.. .+.||+|++||..+. +...+|+++++++.++++++|.+++++|||+|++||||+
T Consensus 232 g~~~~~~l~~~ei~~----------~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~ 300 (347)
T PRK14572 232 GKRNPIALPATEIVP----------GGEFFDFESKYKQGG-SEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFI 300 (347)
T ss_pred CCCCceecccEEEec----------CCCccCHHHccCCCC-eEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEE
Confidence 223456677776542 457999999998765 566789999999999999999999999999999999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+ + +|++||+||||+||||++|++|++|++.|++|.+|++.||+.|++
T Consensus 301 ~-----------------~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~ii~~a~~ 347 (347)
T PRK14572 301 I-----------------V-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDLIEIGLK 347 (347)
T ss_pred E-----------------E-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 6 3 578999999999999999999999999999999999999999864
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-56 Score=552.92 Aligned_cols=339 Identities=27% Similarity=0.317 Sum_probs=274.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
.++++||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+........... ...+ .
T Consensus 448 ~~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~--------~~~~-~- 517 (809)
T PRK14573 448 EPKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSG--------KSVL-S- 517 (809)
T ss_pred CCCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEeccccccccccccc--------cccc-c-
Confidence 34578999999999999999999999999999999999999999999988754311000000000 0000 0
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccc-
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN- 232 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~- 232 (953)
..... ...++|+|||++||.+||||++|++||.+||||+||++.++++||||..+|++|+++|||||+|..+...++.
T Consensus 518 ~~~~~-~~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~ 596 (809)
T PRK14573 518 SEIAQ-ALAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKR 596 (809)
T ss_pred hhhhh-ccccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhccc
Confidence 00001 0136999999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred --hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 233 --ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 233 --~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
...+.++. +.++||+||||+++|||+||++|++.+|+.+++.+++. +++++|||+||.||+|++|+|++++
T Consensus 597 ~~~~~~~~~~-----~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~--~~~~vlVEe~i~~grEi~v~vl~~~ 669 (809)
T PRK14573 597 EPELCLAHIV-----EAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL--YDTDVFVEESRLGSREIEVSCLGDG 669 (809)
T ss_pred ChHHHHHHHH-----HhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCcEEEEeccCCCEEEEEEEEeCC
Confidence 11122222 24789999999999999999999999999888877653 6789999999877799999999743
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCC--ceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ--QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~--~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
. +..++..+.|+.. ...||||++||...+ .+...+|+++++++.++|+++|.+++++|||+|++|
T Consensus 670 ~---~~~~~~~~~e~~~----------~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~r 736 (809)
T PRK14573 670 S---SAYVIAGPHERRG----------SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCR 736 (809)
T ss_pred C---CceEeccceEEcc----------CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 2 1223344555431 346999999995332 234567999999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|||++ +++|++||+||||+||||++|+||++|+++|++|++|+++||+.|++|+.
T Consensus 737 iDf~v-----------------~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ii~~a~~r~~ 791 (809)
T PRK14573 737 IDFFL-----------------DEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQLIIDGLHKFD 791 (809)
T ss_pred EEEEE-----------------cCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 99987 56789999999999999999999999999999999999999999999875
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-56 Score=499.20 Aligned_cols=337 Identities=24% Similarity=0.352 Sum_probs=261.8
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.++||+|||||.|+||||||.||++|+.+|+. .+|+|+||+|+++|.|+..... ...|..+..
T Consensus 2 ~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~~g~~~~~~~~---------~~~~~~~~~------- 64 (343)
T PRK14568 2 NRIKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITKSGVWKLCDGP---------CAEWENGSC------- 64 (343)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECCCCcEEeCCcc---------ccccccccc-------
Confidence 47899999999999999999999999999974 8999999999998888753211 001110000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.. . .+.+.. . ..+|..... ... ....+|+|||++||.+|||
T Consensus 65 ~~----~--~~~~~~-------------------~----~~~~~~~~~--------~~~--~~~~~d~vf~~lhG~~ged 105 (343)
T PRK14568 65 RP----A--VLSPDR-------------------K----VHGLLVLEQ--------GEY--ETIRLDVVFPVLHGKLGED 105 (343)
T ss_pred cc----e--eecccc-------------------c----cccccccCc--------ccc--ccccCCEEEEcCCCCCCCc
Confidence 00 0 000000 0 000000000 000 1124799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|+||++||.+||||+||++.++++||||..||++ |+++|||||+|..+...+. .. .+.+ +||+|||
T Consensus 106 g~iq~lle~~gipy~G~~~~asai~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~--------~~--~~~l-~~P~iVK 171 (343)
T PRK14568 106 GAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIV---AKNAGIATPAFWTVTADER--------PD--AATL-TYPVFVK 171 (343)
T ss_pred hHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHcCcCcCCEEEEECCch--------hh--hhhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999998876431 11 2467 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++|||+||++|++.+||.. +++.++++ +..+|||+||+|+
T Consensus 172 P~~~gsS~Gv~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~---------------- 213 (343)
T PRK14568 172 PARSGSSFGVSKVNSADELDY---AIESARQY-------------------DSKVLIEEAVVGS---------------- 213 (343)
T ss_pred eCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEECCcCCE----------------
Confidence 999999999999999999885 67777655 5789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccC----CCceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG----GTGINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~----g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|+++++++... ..+..++....+||+|+.||.. +.+...+|++ +++++.++++++|.+++
T Consensus 214 ---------E~sv~vl~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~ 280 (343)
T PRK14568 214 ---------EVGCAVLGNGADLV-VGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD---ISAEERSRVQETAKAIY 280 (343)
T ss_pred ---------EEEEEEEcCCCCcc-eecceEEecCCCccchhhhhccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHH
Confidence 99999998754322 2223344445679999988852 2344578887 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
++|||+|++|||||++. +|++||+||||+||||+.|.+++++.++ |..| .+|+++||++|++
T Consensus 281 ~~Lg~~G~~rvDf~l~~-~g~~~llEINt~Pg~t~~S~~p~~~~~~-G~~~-~~l~~~li~~a~~ 342 (343)
T PRK14568 281 RALGCRGLARVDMFLQE-DGTVVLNEVNTLPGFTSYSRYPRMMAAA-GIPL-AELIDRLVSLALT 342 (343)
T ss_pred HHhCCCcEEEEEEEEeC-CCCEEEEEeeCCCCCCccCHHHHHHHHc-CCCH-HHHHHHHHHHHhc
Confidence 99999999999999985 6899999999999999999888888655 4556 5999999999975
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=526.77 Aligned_cols=629 Identities=19% Similarity=0.193 Sum_probs=430.9
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||+||+ .+|+|+| |.+++++|++.||+|+.++.+++.. .... ...|. .+..+....
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~s---g~q~~kalke~G~~vi~v~~np~~~--~~~~------~~aD~-~y~~p~~~~-- 71 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYS---GSQACKALKEEGYRVILVNSNPATI--MTDP------EMADK-VYIEPLTPE-- 71 (1050)
T ss_pred CcEEEEECCCcchhcchhcccch---HHHHHHHHHHcCCEEEEEecchhhc--cCCh------hcCCE-EEECCCCHH--
Confidence 46999999875 7899975 9999999999999999887655321 0000 01111 112221110
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchH----HHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGG----IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~----iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..+++ ++++|.|+|.++|+.+.+.. .+++|+.+|++++|+++.++.+|.||..+|++|+++|+|+|++..+.
T Consensus 72 ~v~~ii~--~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~ 149 (1050)
T TIGR01369 72 AVEKIIE--KERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAH 149 (1050)
T ss_pred HHHHHHH--HhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecC
Confidence 1111111 35899999999999988754 47899999999999999999999999999999999999999999887
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+.+. +.++.+ .++||+||||+.+++|.|+.+|+|.+|+.+.+.+.+......++|||+||+|++|+++.|+
T Consensus 150 s~~e----~~~~~~-----~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~ 220 (1050)
T TIGR01369 150 SVEE----ALAAAK-----EIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVM 220 (1050)
T ss_pred CHHH----HHHHHH-----HhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEE
Confidence 6432 222222 3688999999999999999999999998877666654333468999999999889999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
++..|+ .+.+++.| .+++...+. +. +....|++ ++++..++++++|.+++++||+.|.
T Consensus 221 rd~~g~---~~~~~~~e----------------~~~p~gvh~-g~-~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~ 279 (1050)
T TIGR01369 221 RDSNDN---CITVCNME----------------NFDPMGVHT-GD-SIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGG 279 (1050)
T ss_pred EeCCCC---EEEEeece----------------eccCcceec-Cc-eEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 875443 23322221 223333232 22 45568886 8999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHH----HHhhh---
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG----HACSR--- 458 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~----~a~~r--- 458 (953)
++|||++ ++ +|++||+||||+++-+ +. ...+++|+++.++..++-- ..+..
T Consensus 280 ~~Vef~l-----------------~~~~g~~~viEiNPR~~~s--~~--l~s~atG~pl~~~~~~~alG~~l~~~~n~i~ 338 (1050)
T TIGR01369 280 CNVQFAL-----------------NPDSGRYYVIEVNPRVSRS--SA--LASKATGYPIAKVAAKLAVGYGLDELKNPVT 338 (1050)
T ss_pred eEEEEEE-----------------ECCCCcEEEEEeecCcCcc--hh--hhhHHhCCCHHHHHHHHHcCCCchhhcCCCc
Confidence 9999987 33 5789999999988743 22 2233567766555433320 00000
Q ss_pred ------C-CCC--------CCCCCc---------------c--eec----------------------------------
Q 002207 459 ------F-PNL--------ASYNSV---------------S--SHL---------------------------------- 472 (953)
Q Consensus 459 ------~-~~~--------~~~~~~---------------~--~~~---------------------------------- 472 (953)
+ +++ +|++.. + |.+
T Consensus 339 g~~~~~~~p~~~~~~~k~p~~~~~~~~~~~~~~~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~~~~~~~~~~~~~~~~~~ 418 (1050)
T TIGR01369 339 GTTPASFEPSLDYVVVKIPRWDFDKFAGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGATGFDLPDREVEPDED 418 (1050)
T ss_pred CcCccccCcCCCeEEEEEEeCCCCCCCcccCCcCcccceeeEEEEECCCHHHHHHHHHHHhccCCCCCCccccCCCCHHH
Confidence 1 000 111100 0 000
Q ss_pred -------------------------------------------------cccccc-----CCCc----------------
Q 002207 473 -------------------------------------------------PGRSSG-----SKPT---------------- 482 (953)
Q Consensus 473 -------------------------------------------------~~~~~~-----~~~~---------------- 482 (953)
++++.. ++.+
T Consensus 419 ~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~d~~~a 498 (1050)
T TIGR01369 419 LWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDPELLRRAKKLGFSDAQIA 498 (1050)
T ss_pred HHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHcCCCHHHHH
Confidence 111100 0000
Q ss_pred ----------------------------------------------c-ccccCCCceEEEEecCCC-----cccceeccc
Q 002207 483 ----------------------------------------------E-ALNKREGIREVFVIFGGD-----TSERQVSLM 510 (953)
Q Consensus 483 ----------------------------------------------~-~~~~~~~~~~v~vl~GG~-----s~E~~vS~~ 510 (953)
+ +......++||.||-+|. +.|.|.|++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~~kvlvlG~G~~rig~~~efd~~~v 578 (1050)
T TIGR01369 499 RLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKKVLVLGSGPNRIGQGVEFDYCCV 578 (1050)
T ss_pred HHhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcccCCCCceEEEecCcccccccccccchHHH
Confidence 0 111113456888877654 578887766
Q ss_pred cHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCccccccccc
Q 002207 511 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSH 590 (953)
Q Consensus 511 s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (953)
.+ ..+|+. .+|+++.|..+|+. +... .+..+..+..
T Consensus 579 ~~---i~al~~-~G~~vI~v~~npet-vs~d--------~~~~D~ly~e------------------------------- 614 (1050)
T TIGR01369 579 HA---VLALRE-LGYETIMINYNPET-VSTD--------YDTSDRLYFE------------------------------- 614 (1050)
T ss_pred HH---HHHHHh-CCCEEEEEecCCcc-cccc--------ccccceEEEe-------------------------------
Confidence 65 366664 67887765444421 0000 0000111110
Q ss_pred cccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChH
Q 002207 591 LRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669 (953)
Q Consensus 591 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~ 669 (953)
+.+.+.+++. .++.+|.|++.+.|.... .+...|+..|+|+.|+++.
T Consensus 615 ------------------------------p~~~e~vl~i~~~e~idgVI~~~gg~~~~--~la~~le~~Gi~i~G~s~~ 662 (1050)
T TIGR01369 615 ------------------------------PLTFEDVMNIIELEKPEGVIVQFGGQTPL--NLAKALEEAGVPILGTSPE 662 (1050)
T ss_pred ------------------------------cCCHHHHHHHHhhcCCCEEEEccCcHhHH--HHHHHHHHCCCcEECCCHH
Confidence 1112222322 345789999888765433 5778889999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHH
Q 002207 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749 (953)
Q Consensus 670 as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~ 749 (953)
++..|.||..++++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.+++|.||.+|++.+||.
T Consensus 663 ~i~~~~DK~~f~~l---L~~~GIp~P~~~~v~s~e--------e~~~~~~~i-gyPvIVKP~~~~Gg~gv~iv~~~eeL~ 730 (1050)
T TIGR01369 663 SIDRAEDREKFSEL---LDELGIPQPKWKTATSVE--------EAVEFASEI-GYPVLVRPSYVLGGRAMEIVYNEEELR 730 (1050)
T ss_pred HHHHHCCHHHHHHH---HHHCCcCCCCeEEECCHH--------HHHHHHHhc-CCCEEEEECCCCCCCCeEEECCHHHHH
Confidence 99999999999998 999999999999887633 234456778 699999999999999999999999988
Q ss_pred HHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc-CcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 750 ~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
. +++.++... ...++|||+||+ |. |++|.++.++
T Consensus 731 ~---~l~~a~~~s-----------------~~~~vlVeefI~~G~-------------------------E~~Vd~l~d~ 765 (1050)
T TIGR01369 731 R---YLEEAVEVS-----------------PEHPVLIDKYLEDAV-------------------------EVDVDAVSDG 765 (1050)
T ss_pred H---HHHHHHHhC-----------------CCCCEEEeecCCCCe-------------------------EEEEEEEEeC
Confidence 6 455554331 246799999999 64 9999999887
Q ss_pred CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEE
Q 002207 829 GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908 (953)
Q Consensus 829 ~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~ 908 (953)
+... ..+..+.... ...+.|.+...+|+. .+++++.+++++++.+++++||+.|+++|||+++ +|++|
T Consensus 766 g~v~-i~~i~e~~~~-------~gv~sGds~~~~P~~--~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~--~~~~y 833 (1050)
T TIGR01369 766 EEVL-IPGIMEHIEE-------AGVHSGDSTCVLPPQ--TLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK--DGEVY 833 (1050)
T ss_pred CEEE-EEEEEEeecc-------cCCcCCCceEEecCC--CCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE--CCeEE
Confidence 6533 2222222111 112345556667774 2688999999999999999999999999999998 47899
Q ss_pred EEeeCCCCC
Q 002207 909 IIEVNTVPG 917 (953)
Q Consensus 909 viEINt~PG 917 (953)
|||||++++
T Consensus 834 vIEvNpR~s 842 (1050)
T TIGR01369 834 VIEVNPRAS 842 (1050)
T ss_pred EEEEeCCCC
Confidence 999999875
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=530.78 Aligned_cols=631 Identities=17% Similarity=0.183 Sum_probs=428.8
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||.+|. .+|+|+| |.+++++|++.||+|+.++.++.. +..++ ...|. .++.+... .
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~s---g~~~~~aLke~G~~vi~v~~~p~~--~~~~~------~~aD~-~y~~p~~~--e 72 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYS---GTQACKALREEGYRVVLVNSNPAT--IMTDP------EMADA-TYIEPITP--E 72 (1066)
T ss_pred CCEEEEECCchhhhcccccccch---HHHHHHHHHHcCCEEEEEcCCccc--ccCCc------ccCCE-EEECCCCH--H
Confidence 36899998874 7999995 999999999999999987654421 11000 01111 11222110 0
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..+. ..+++|+|+|.+||..|.+..+ ++.|+.+|++++|+++.++.+|+||..+|++|+++|+|+|++..+.
T Consensus 73 ~l~~ii--~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~ 150 (1066)
T PRK05294 73 FVEKII--EKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAH 150 (1066)
T ss_pred HHHHHH--HHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeC
Confidence 011111 1458999999999999998765 5789999999999999999999999999999999999999999987
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+.++ +.++.+ .++||+||||+.+++|.|+.+|++.+|+.+.+.+.+.......+|||+||+|++|+++.++
T Consensus 151 s~~e----~~~~~~-----~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~ 221 (1066)
T PRK05294 151 SMEE----ALEVAE-----EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVM 221 (1066)
T ss_pred CHHH----HHHHHH-----HcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEE
Confidence 6432 333332 3678999999999999999999999998877665554334568999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCC-C
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLC-D 385 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~-G 385 (953)
+++.|+ .+.+++.| .+++.. ++.+. .....|+ .++++..++++++|.+++++||+. |
T Consensus 222 rd~~g~---~~~~~~~e----------------~~dp~g-ih~g~-~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G 280 (1066)
T PRK05294 222 RDKNDN---CIIVCSIE----------------NIDPMG-VHTGD-SITVAPAQTLTDKEYQMLRDASIAIIREIGVETG 280 (1066)
T ss_pred EcCCCC---EEEEeeee----------------eccccc-eecCC-eEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccC
Confidence 864432 33322221 122222 22232 4456788 689999999999999999999999 9
Q ss_pred eeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH-------------
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII------------- 452 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li------------- 452 (953)
.++|||+++ ..+|++||+||||+++-+ +.+ ..+++|+++.+...++-
T Consensus 281 ~~~vef~~~----------------~~~g~~~viEiNPR~~~s--~~~--~s~~tG~pl~~~~~~~~lG~~l~~m~n~~~ 340 (1066)
T PRK05294 281 GCNVQFALN----------------PKDGRYIVIEMNPRVSRS--SAL--ASKATGYPIAKVAAKLAVGYTLDEIKNDIT 340 (1066)
T ss_pred ceEEEEEEE----------------CCCCcEEEEEeecCCCcc--eee--eeHhhCCCHHHHHHHHHcCCChHHhcCccc
Confidence 999999873 146889999999887632 221 11244555544433221
Q ss_pred HHHhhhC-CCC--------CCCCC--------cc---------eec----------------------------------
Q 002207 453 GHACSRF-PNL--------ASYNS--------VS---------SHL---------------------------------- 472 (953)
Q Consensus 453 ~~a~~r~-~~~--------~~~~~--------~~---------~~~---------------------------------- 472 (953)
......+ +.+ +|++. .+ |.+
T Consensus 341 g~~~~~~~p~~~~v~~k~p~~~~~~y~k~~~~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1066)
T PRK05294 341 GKTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALRSLEIGVTGLDEDLFEEESLEE 420 (1066)
T ss_pred CCCcccccccCCeEEEEccCCccccccCCCCCccceecccceEEEEcCCHHHHHHHHHHhcCCCCCCCCccccccCCHHH
Confidence 0000000 000 00000 00 000
Q ss_pred -------------------------------------------------ccccccCC--Cc-------------------
Q 002207 473 -------------------------------------------------PGRSSGSK--PT------------------- 482 (953)
Q Consensus 473 -------------------------------------------------~~~~~~~~--~~------------------- 482 (953)
++.++... ..
T Consensus 421 ~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~d~~~a~ 500 (1066)
T PRK05294 421 LREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENGLPLDAELLREAKRLGFSDARIAK 500 (1066)
T ss_pred HHhhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCCHHHHHH
Confidence 11111000 00
Q ss_pred ---------------------------------------------cccccCCCceEEEEecCCC-----cccceeccccH
Q 002207 483 ---------------------------------------------EALNKREGIREVFVIFGGD-----TSERQVSLMSG 512 (953)
Q Consensus 483 ---------------------------------------------~~~~~~~~~~~v~vl~GG~-----s~E~~vS~~s~ 512 (953)
++......++||.||.+|. +.|.|.|++.+
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~k~~d~~a~e~~~~~~~~y~~~~~~~~~~~~~~kkvlilG~G~~~ig~~~efdy~~v~~ 580 (1066)
T PRK05294 501 LLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPSDRKKVLVLGSGPNRIGQGIEFDYCCVHA 580 (1066)
T ss_pred HhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCcceeECCCCCCCccCCCceEEEECccccccccccccchhHHHH
Confidence 1111113567888887654 67888777754
Q ss_pred HHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCccccccccccc
Q 002207 513 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLR 592 (953)
Q Consensus 513 ~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (953)
..+|+. .+|+++.+..+|+. .... .+..+..+..
T Consensus 581 ---i~alk~-~G~~vi~v~~npet-vs~~--------~~~aD~~y~e--------------------------------- 614 (1066)
T PRK05294 581 ---VLALRE-AGYETIMVNCNPET-VSTD--------YDTSDRLYFE--------------------------------- 614 (1066)
T ss_pred ---HHHHHH-CCCEEEEEeCCccc-cccc--------cchhhheeec---------------------------------
Confidence 366764 67877765444421 0000 0000011110
Q ss_pred cceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHH
Q 002207 593 NQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671 (953)
Q Consensus 593 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as 671 (953)
+++.+.+++. .++.+|.|++.+.|..+. .+...||.+|+|+.|+++.++
T Consensus 615 ----------------------------~~~~e~v~~i~~~e~~dgVi~~~g~~~~~--~la~~le~~Gi~ilg~s~~ai 664 (1066)
T PRK05294 615 ----------------------------PLTLEDVLEIIEKEKPKGVIVQFGGQTPL--KLAKALEAAGVPILGTSPDAI 664 (1066)
T ss_pred ----------------------------CCCHHHHHHHHHHcCCCEEEEEeCchhHH--HHHHHHHHCCCceeCCCHHHH
Confidence 1122232332 346789999998777664 677889999999999999999
Q ss_pred HHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHH
Q 002207 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751 (953)
Q Consensus 672 ~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~ 751 (953)
.+|+||..++++ |+++|||+|++..+.+.+ .+.++.+.+ +||+||||+.+++|.|+.+|++.+||..
T Consensus 665 ~~~~DK~~~~~~---L~~~GIp~P~~~~~~s~e--------e~~~~~~~i-gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~- 731 (1066)
T PRK05294 665 DLAEDRERFSKL---LEKLGIPQPPNGTATSVE--------EALEVAEEI-GYPVLVRPSYVLGGRAMEIVYDEEELER- 731 (1066)
T ss_pred HHhCCHHHHHHH---HHHcCcCCCCeEEECCHH--------HHHHHHHhc-CCCeEEEeCCCCCCCcEEEECCHHHHHH-
Confidence 999999999999 999999999999886532 233455678 6999999999999999999999999886
Q ss_pred HHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCc
Q 002207 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~ 831 (953)
+++.++... ...++|||+||+|. +|++|.++.+++.
T Consensus 732 --~~~~a~~~s-----------------~~~~vlIEefI~G~------------------------~E~sV~~v~dg~~- 767 (1066)
T PRK05294 732 --YMREAVKVS-----------------PDHPVLIDKFLEGA------------------------IEVDVDAICDGED- 767 (1066)
T ss_pred --HHHHHHhhC-----------------CCCcEEEEecCCCC------------------------EEEEEEEEecCCe-
Confidence 455554331 15679999999996 5999999986542
Q ss_pred eeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEe
Q 002207 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 832 ~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viE 911 (953)
+.+.+.++..... ..+.|.+...+|+. .++++..+++++++.+++++||+.|+++|||+++ +|++||+|
T Consensus 768 v~i~~i~e~i~~~-------gv~~Gds~~~~p~~--~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~--~~~~yViE 836 (1066)
T PRK05294 768 VLIGGIMEHIEEA-------GVHSGDSACSLPPQ--TLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK--DDEVYVIE 836 (1066)
T ss_pred EEEeeeEEeeeec-------cccCCCCcEEecCC--CCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE--CCeEEEEE
Confidence 2233333322111 12345555566653 2688999999999999999999999999999997 57899999
Q ss_pred eCCCCC
Q 002207 912 VNTVPG 917 (953)
Q Consensus 912 INt~PG 917 (953)
||++++
T Consensus 837 iNpR~s 842 (1066)
T PRK05294 837 VNPRAS 842 (1066)
T ss_pred EecCCC
Confidence 999875
|
|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=479.95 Aligned_cols=294 Identities=22% Similarity=0.311 Sum_probs=248.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
+++||+|||||.|+||+|||.||++|+++|++.||+|+.++++. .++. .
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~--~~~~------------------~----------- 50 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASG--KELV------------------A----------- 50 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCc--hhHH------------------H-----------
Confidence 36799999999999999999999999999999999998765432 1110 0
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
.....++|+|||++||..||||.+|++||.+||||+||++.++++|+||..+|++|+++|||||++..+.... ..
T Consensus 51 --~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~ 125 (296)
T PRK14569 51 --KLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL---VA 125 (296)
T ss_pred --HhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hh
Confidence 0112379999999999999999999999999999999999999999999999999999999999998775321 00
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
...++||+||||+++|||+||++|++.+|+.++..+++. + +.+|||+||+| +|++|.|+++ ..
T Consensus 126 ---------~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~--~-~~~lvEefI~G-~E~tv~vl~~----~~ 188 (296)
T PRK14569 126 ---------EDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK--Y-GEVMIEQWVTG-KEITVAIVND----EV 188 (296)
T ss_pred ---------HhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh--c-CCEEEEccccc-EEEEEEEECC----cC
Confidence 123789999999999999999999999998877765432 3 47999999997 9999999952 11
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
+.. +.+.+ ...||+|..||... +.+.+|+.++++..+++++.|.+++++|||+|++||||++
T Consensus 189 ----~~~--~~i~~--------~~~~~~~~~k~~~~--~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~-- 250 (296)
T PRK14569 189 ----YSS--VWIEP--------QNEFYDYESKYSGK--SIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIY-- 250 (296)
T ss_pred ----cce--EEEec--------CCCcCChhhccCCC--cEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEE--
Confidence 111 12221 34689999999633 5678999999999999999999999999999999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+++|++||+||||+||||++|++|++|+++|++|++|+..||+.|
T Consensus 251 ---------------~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii~~a 295 (296)
T PRK14569 251 ---------------DDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 (296)
T ss_pred ---------------cCCCCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999999999875
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=487.60 Aligned_cols=333 Identities=27% Similarity=0.371 Sum_probs=266.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+|||||.|+||||||.||++|+.+|+. .+|+|++|+++++|.|...... ...+. +.
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~~g~~~~~~~~---------~~~~~--~~------ 62 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITKDGRWYLIDAD---------NMELA--DD------ 62 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECCCCCEeeccch---------hhhcc--cc------
Confidence 357899999999999999999999999999975 8999999999998777542100 00000 00
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
...+. .+. +.... .. ....+|+|||++||.+||
T Consensus 63 ----------~~~~~-----------------------~~~--~~~~~--------~~----~~~~~D~vf~~lhG~~ge 95 (333)
T PRK01966 63 ----------DNDKE-----------------------DLS--LLILP--------SG----GSEEVDVVFPVLHGPPGE 95 (333)
T ss_pred ----------ccccc-----------------------ccc--hhccc--------cc----cCccCCEEEEccCCCCCC
Confidence 00000 000 00000 00 001479999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+|+++.++++||||..||++ |+++|||||++..+...+.. ...+..+.+.+ +||+||
T Consensus 96 dg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~----~~~~~~~~~~~-~~P~vV 167 (333)
T PRK01966 96 DGTIQGLLELLGIPYVGCGVLASALSMDKILTKRL---LAAAGIPVAPYVVLTRGDWE----EASLAEIEAKL-GLPVFV 167 (333)
T ss_pred CcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEEeccccc----hhhHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 99999999999988765421 01234455678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|||.||++|++.+||.. +++.++++ ++.+|||+||+|+
T Consensus 168 KP~~~gsS~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEefI~G~--------------- 210 (333)
T PRK01966 168 KPANLGSSVGISKVKNEEELAA---ALDLAFEY-------------------DRKVLVEQGIKGR--------------- 210 (333)
T ss_pred EeCCCCCccCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEcCcCCE---------------
Confidence 9999999999999999998885 67777655 5789999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+++++++. +.+..++....+||||++||..+.+...+|++ +++++.++++++|.+++++|
T Consensus 211 ----------E~~v~vl~~~~~---~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~aL 274 (333)
T PRK01966 211 ----------EIECAVLGNDPK---ASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD---LSEELTEKIRELAIKAFKAL 274 (333)
T ss_pred ----------EEEEEEECCCCe---EcccEEEecCCceEcHHHccCCCCceEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 999999997332 34445565555799999999877677788886 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||+|++||||+++. +|++||+||||+||||+.|.++++|.++ |..| .+++++||+.|++
T Consensus 275 g~~G~~rvDf~~~~-~g~~~vlEiNt~Pg~t~~s~~p~~~~~~-G~~~-~~l~~~ii~~a~~ 333 (333)
T PRK01966 275 GCSGLARVDFFLTE-DGEIYLNEINTMPGFTPISMYPKLWEAS-GLSY-PELIDRLIELALE 333 (333)
T ss_pred CCcceEEEEEEEcC-CCCEEEEEeeCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHhC
Confidence 99999999999985 6899999999999999999888777766 4455 6999999999873
|
|
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=489.44 Aligned_cols=343 Identities=23% Similarity=0.385 Sum_probs=264.8
Q ss_pred eEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhh
Q 002207 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571 (953)
Q Consensus 492 ~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 571 (953)
+||+|||||.|+|||||+.||++|+.+|+. .+|+|.|+++++++.|...... ...|..... .....
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~v~~i~~~~~~~~~~~~~~---------~~~~~~~~~----~~~~~ 67 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHT-MGHSVKPILLTPDGGWVVPTVY---------RPSIPDESG----NSEDL 67 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhh-cCCEEEEEEECCCCCEeecccc---------ccccccccc----ccccc
Confidence 489999999999999999999999999975 8999999999998777632110 000100000 00000
Q ss_pred HHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccH
Q 002207 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~ 651 (953)
...++. +..+ +.. +.......+|+||+++||.+||||+
T Consensus 68 -----------------------~~~~~~---~~~~----~~~------------~~~~~~~~~d~~f~~~hg~~gEdg~ 105 (347)
T PRK14572 68 -----------------------FLEEFQ---KANG----VSE------------PADISQLDADIAFLGLHGGAGEDGR 105 (347)
T ss_pred -----------------------cccccc---cccc----ccc------------cccccccCcCEEEEecCCCCCCCcH
Confidence 000000 0000 000 0000112479999999999999999
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
||++||.+||||+|+++.++++||||..||++ |+++|||||+++.+.+.++... ..+... ..+++ +||+||||+
T Consensus 106 iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~---l~~~GI~~p~~~~~~~~~~~~~-~~~~~~-~~~~l-~~PvvVKP~ 179 (347)
T PRK14572 106 IQGFLDTLGIPYTGSGVLASALAMDKTRANQI---FLQSGQKVAPFFELEKLKYLNS-PRKTLL-KLESL-GFPQFLKPV 179 (347)
T ss_pred HHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEEEccccccC-hHHHHH-HHHhc-CCCEEEecC
Confidence 99999999999999999999999999999999 9999999999999876543221 111122 23568 699999999
Q ss_pred CCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhh
Q 002207 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811 (953)
Q Consensus 732 ~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~ 811 (953)
++|+|.||++|++.++|.. +++.++.+ ++.+|||+||+|+
T Consensus 180 ~ggsS~GV~~v~~~~el~~---a~~~~~~~-------------------~~~vlVEefI~G~------------------ 219 (347)
T PRK14572 180 EGGSSVSTYKITNAEQLMT---LLALIFES-------------------DSKVMSQSFLSGT------------------ 219 (347)
T ss_pred CCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCCEEEEcCcccE------------------
Confidence 9999999999999999875 66666654 5789999999997
Q ss_pred cCCCceeEEEEEEEcCC--CC-ceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 812 KGNSRWVEITVGVIGKC--GS-MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 812 ~g~~~~~Eitv~vl~~~--~~-~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+|+++. +. .....|..++...++||+|++||..+....++|++ +++++.++++++|.+++++|
T Consensus 220 -------E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~~L 289 (347)
T PRK14572 220 -------EVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR---ISDQEMKRVQELAIRAHESL 289 (347)
T ss_pred -------EEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999742 22 12234555666667899999999987777788987 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||+|++|||||++ +|++||+||||+||||+.|.++++|.+++ ..| .+|+++||+.|++
T Consensus 290 g~~G~~rvD~~~~--~~~~~vlEiNt~PG~t~~S~~p~~~~~~G-~~~-~~l~~~ii~~a~~ 347 (347)
T PRK14572 290 GCKGYSRTDFIIV--DGEPHILETNTLPGMTETSLIPQQAKAAG-INM-EEVFTDLIEIGLK 347 (347)
T ss_pred CCcceeEEEEEEE--CCcEEEEeeeCCCCCCcccHHHHHHHHcC-CCH-HHHHHHHHHHHhC
Confidence 9999999999997 47899999999999999998888888774 344 7999999999874
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=518.86 Aligned_cols=627 Identities=16% Similarity=0.177 Sum_probs=425.8
Q ss_pred cCeEEEEecCCC-----CchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGPS-----AERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~S-----~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||+||++ +|+|+| |.+++++|++.||+|+.++.++. .+..++ ...+ ..+.++..
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~s---g~q~~~aL~e~G~~vi~v~~np~--~~~~d~------~~ad-~~y~ep~~---- 70 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYS---GTQACLALKEEGYQVVLVNPNPA--TIMTDP------APAD-TVYFEPLT---- 70 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhH---HHHHHHHHHHcCCEEEEEeCCcc--hhhcCc------ccCC-eeEECCCC----
Confidence 369999999876 899994 99999999999999988764432 111110 0111 11222211
Q ss_pred cchhHHHh-hccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe
Q 002207 152 SLSEFAEH-LAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226 (953)
Q Consensus 152 ~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~ 226 (953)
...+.+. .++++|+|+|.+||..+.+..+ ++.|+.+|++++|+++.++.++.||..+|++|+++|||+|++..+
T Consensus 71 -~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v 149 (1068)
T PRK12815 71 -VEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIV 149 (1068)
T ss_pred -HHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceee
Confidence 1111111 2358999999999999988765 578999999999999999999999999999999999999999998
Q ss_pred cCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEE
Q 002207 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~V 306 (953)
.+.++ +.++.+ .++||+||||+.+++|.|+.+|+|.+|+.+.+.+.+......++|||+||+|++|+++.|
T Consensus 150 ~s~ee----~~~~~~-----~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v 220 (1068)
T PRK12815 150 TSVEE----ALAFAE-----KIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEV 220 (1068)
T ss_pred CCHHH----HHHHHH-----HcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEE
Confidence 76432 333332 368899999999999999999999999887776665433346899999999978999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCC
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCD 385 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G 385 (953)
+++.+|+ .+.+++.| .++..... .+ .+....|+ .++++..++++++|.+++++||+.|
T Consensus 221 ~rD~~g~---~~~~~~~e----------------~~~p~gi~-tG-~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G 279 (1068)
T PRK12815 221 MRDRNGN---CITVCNME----------------NIDPVGIH-TG-DSIVVAPSQTLTDDEYQMLRSASLKIISALGVVG 279 (1068)
T ss_pred EEcCCCC---EEEEEece----------------eccccccc-CC-ceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 9865432 33333221 11111111 12 24456788 4899999999999999999999999
Q ss_pred eeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH-------------
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI------------- 451 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l------------- 451 (953)
.++|||++ ++ +|++||+||||+++ .++.+. .+++|+++.++..++
T Consensus 280 ~~~vef~l-----------------~~~~g~~~ViEINPR~~--~s~~l~--~~atG~pl~~~~~~~alG~~l~ei~~~i 338 (1068)
T PRK12815 280 GCNIQFAL-----------------DPKSKQYYLIEVNPRVS--RSSALA--SKATGYPIAKIAAKLAVGYTLNELKNPV 338 (1068)
T ss_pred ceEEEEEE-----------------ECCCCcEEEEEEecCcc--cchhhh--hHhhCCcHHHHHHHHHcCCChHHhcCCc
Confidence 99999987 44 47899999997765 444332 123444433332222
Q ss_pred HHHHhhhC-CCC--------CCCCCc---------------c--eec---------------------------------
Q 002207 452 IGHACSRF-PNL--------ASYNSV---------------S--SHL--------------------------------- 472 (953)
Q Consensus 452 i~~a~~r~-~~~--------~~~~~~---------------~--~~~--------------------------------- 472 (953)
+......+ +.+ +|++.. | |.+
T Consensus 339 ~g~~~a~~ep~~d~~~~k~p~~~f~~y~~~~~~~g~kmks~G~v~~ig~~~eea~~ka~~~~~~~~~~~~~~~~~~~~~~ 418 (1068)
T PRK12815 339 TGLTYASFEPALDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKALRSLEIKRNGLSLPIELSGKSD 418 (1068)
T ss_pred cCCcccccCCccceEEEEeccCccccccCccccccceecccceEEEecCCHHHHHHHHHHhhcCCCCCCCCccccccCCH
Confidence 11100000 000 111100 0 000
Q ss_pred ---------------------------------------------------ccccccC----CCc---------------
Q 002207 473 ---------------------------------------------------PGRSSGS----KPT--------------- 482 (953)
Q Consensus 473 ---------------------------------------------------~~~~~~~----~~~--------------- 482 (953)
++.+... ..+
T Consensus 419 ~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~gfsd~~i 498 (1068)
T PRK12815 419 EELLQDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAEDGLDLSADLLRKVKEKGFSDALL 498 (1068)
T ss_pred HHHHHHhccCCCChHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCccCCHHHHHHHHHcCCCHHHH
Confidence 1111000 000
Q ss_pred -----------------------------------------------cccccCC-CceEEEEecCCC-----cccceecc
Q 002207 483 -----------------------------------------------EALNKRE-GIREVFVIFGGD-----TSERQVSL 509 (953)
Q Consensus 483 -----------------------------------------------~~~~~~~-~~~~v~vl~GG~-----s~E~~vS~ 509 (953)
++..... .++||.||.+|. +.|.|.++
T Consensus 499 a~~~~~~~~~v~~~r~~~~~~p~~k~vd~~a~ef~~~t~~~y~ty~~~~~~~~~~~~kkvLIlG~G~~rig~~~efdy~~ 578 (1068)
T PRK12815 499 AELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEKKKVLILGSGPIRIGQGIEFDYSS 578 (1068)
T ss_pred HHHhCcCHHHHHHHHHHCCCeeEEEEecCCcCcccCCCCceeeeCCCCCcCccCCCCceEEEecccccccccccccchhH
Confidence 1111112 567888877753 57888777
Q ss_pred ccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCcccccccc
Q 002207 510 MSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTS 589 (953)
Q Consensus 510 ~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (953)
+.+. .+|+. .+|+++.+.-+|+. .+.+ ....+..+..
T Consensus 579 v~~~---~aLk~-~G~~vI~vn~npet--vs~~-------~~~aD~~y~e------------------------------ 615 (1068)
T PRK12815 579 VHAA---FALKK-EGYETIMINNNPET--VSTD-------YDTADRLYFE------------------------------ 615 (1068)
T ss_pred HHHH---HHHHH-cCCEEEEEeCCccc--cccc-------cccCceEEEc------------------------------
Confidence 6664 55654 57877755444321 0000 0001111111
Q ss_pred ccccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCCh
Q 002207 590 HLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 668 (953)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~ 668 (953)
+.+.+.+++. .++++|.|++.+.|... -.+...|+.+|+|+.|+++
T Consensus 616 -------------------------------p~~~e~vl~I~~~e~~dgVI~~~g~~~~--~~la~~le~~Gi~ilG~s~ 662 (1068)
T PRK12815 616 -------------------------------PLTLEDVLNVAEAENIKGVIVQFGGQTA--INLAKGLEEAGLTILGTSP 662 (1068)
T ss_pred -------------------------------cCCHHHHHHHHhhcCCCEEEEecCcHHH--HHHHHHHHHCCCeEECCcH
Confidence 1122333333 34678999998877643 2567788999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccH
Q 002207 669 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748 (953)
Q Consensus 669 ~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL 748 (953)
.+...|.||..++++ |+++|||+|++..+.+.+ .+.++.+.+ +||+||||+.+++|.|+.+|++.++|
T Consensus 663 e~i~~~~DK~~f~~l---l~~~GIp~P~~~~~~s~e--------e~~~~~~~i-gyPvVVKP~~~~Gg~gv~iv~~~eeL 730 (1068)
T PRK12815 663 DTIDRLEDRDRFYQL---LDELGLPHVPGLTATDEE--------EAFAFAKRI-GYPVLIRPSYVIGGQGMAVVYDEPAL 730 (1068)
T ss_pred HHHHHHcCHHHHHHH---HHHcCcCCCCeEEeCCHH--------HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHH
Confidence 999999999999999 999999999999886532 234456778 69999999999999999999999998
Q ss_pred HHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 749 ~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
..+ ++.+... ..++|||+||+|. |+++.++.++
T Consensus 731 ~~~---l~~~~s~-------------------~~~vlIeefI~G~-------------------------E~~Vd~i~dg 763 (1068)
T PRK12815 731 EAY---LAENASQ-------------------LYPILIDQFIDGK-------------------------EYEVDAISDG 763 (1068)
T ss_pred HHH---HHHhhcC-------------------CCCEEEEEeecCc-------------------------eEEEEEEEcC
Confidence 864 4443211 5789999999997 9999999875
Q ss_pred CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEE
Q 002207 829 GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908 (953)
Q Consensus 829 ~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~ 908 (953)
+.. .+.+.++.....+ .+.|.+..+.|+. .++++..+++++.+.+++++||+.|+.+|||+++ +|++|
T Consensus 764 ~~v-~i~~i~e~~e~~g-------v~sGds~~v~pp~--~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~--~~~~y 831 (1068)
T PRK12815 764 EDV-TIPGIIEHIEQAG-------VHSGDSIAVLPPQ--SLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLA--NDEIY 831 (1068)
T ss_pred Cce-EEeeEEEEeeccC-------CcCCCeeEEECCC--CCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEE--CCcEE
Confidence 443 2333333222111 2334455566654 2788999999999999999999999999999998 47899
Q ss_pred EEeeCCCCCC
Q 002207 909 IIEVNTVPGM 918 (953)
Q Consensus 909 viEINt~PGl 918 (953)
++|||++++-
T Consensus 832 viEiNpR~s~ 841 (1068)
T PRK12815 832 VLEVNPRASR 841 (1068)
T ss_pred EEEEeCCCCc
Confidence 9999998874
|
|
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=467.98 Aligned_cols=315 Identities=27% Similarity=0.354 Sum_probs=271.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|++||.|+||+||+.||.+++++|+..+|++..++++.++.|......+
T Consensus 2 ~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 55 (317)
T COG1181 2 KMKVAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVT-------------------------- 55 (317)
T ss_pred ceEEEEeeCCccccceEEEecHHHHHHHHhhcCceeEEEeccccceEEeccccc--------------------------
Confidence 579999999999999999999999999999999999999999988886422100
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
.....++|++||.+||.+||||++|++|+.+|+||||+++.+++.+|||..+|++++..|+|++++..+...+......
T Consensus 56 -~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~ 134 (317)
T COG1181 56 -KRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIV 134 (317)
T ss_pred -hhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHH
Confidence 0112379999999999999999999999999999999999999999999999999999999999999998654311111
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
++.. ..++||+||||++.|||+|+++|++.+|+......++ .+++++|+|+|+.| +|++|++++ +...
T Consensus 135 e~~~-----~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~--~~d~~vl~e~~~~~-rei~v~vl~----~~~~ 202 (317)
T COG1181 135 EEVE-----EGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAF--KYDRDVLREQGITG-REIEVGVLG----NDYE 202 (317)
T ss_pred HHhh-----cccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHH--HhCCceeeccCCCc-ceEEEEecC----Cccc
Confidence 2221 3478999999999999999999999998776444443 48999999999996 999999995 3225
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
+.+++++||... ...||||++||..++.+.+.+|+.+++++.++++++|.+++++|||+|++|+|||+.
T Consensus 203 ~~~l~~~eI~~~---------~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~-- 271 (317)
T COG1181 203 EQALPLGEIPPK---------GEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVD-- 271 (317)
T ss_pred ceecCceEEecC---------CCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEE--
Confidence 678888887531 368999999999966688999999999999999999999999999999999999873
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+++|++|++||||+||||++|+||++|++.|++|.+|+..+++.|
T Consensus 272 --------------~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~a 316 (317)
T COG1181 272 --------------DDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRFVELA 316 (317)
T ss_pred --------------CCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHHHHhhc
Confidence 236899999999999999999999999999999999999999875
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=527.16 Aligned_cols=339 Identities=24% Similarity=0.291 Sum_probs=267.6
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.++||+|||||.|+||||||.||++|+.+|+. .+|+|++|+|+++|.|...... ..|..
T Consensus 449 ~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~-~~~~v~~~~i~~~g~~~~~~~~----------~~~~~--------- 508 (809)
T PRK14573 449 PKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSP-EFYDVSYFLINRQGLWETVSSL----------ETAIE--------- 508 (809)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCcEEEEEEECCCCeEEecccc----------ccccc---------
Confidence 457899999999999999999999999999975 8999999999987655421000 00000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
. .+. ... +. .+.. .....+|+|||++||.+||
T Consensus 509 ----------~-~~~-------------------------~~~----------~~-~~~~-~~~~~~d~vf~~lhG~~ge 540 (809)
T PRK14573 509 ----------E-DSG-------------------------KSV----------LS-SEIA-QALAKVDVVLPILHGPFGE 540 (809)
T ss_pred ----------c-ccc-------------------------ccc----------cc-hhhh-hccccCCEEEEcCCCCCCC
Confidence 0 000 000 00 0000 0113579999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||+||++||.+||||+||++.++++||||..+|++ |+++|||||+|..+...++... ....+.++.+++ +||+||
T Consensus 541 dg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~---l~~~GIpt~~~~~~~~~~~~~~-~~~~~~~~~~~l-g~P~iV 615 (809)
T PRK14573 541 DGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRF---ASDVGVPVVPYQPLTLAGWKRE-PELCLAHIVEAF-SFPMFV 615 (809)
T ss_pred ChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEechhcccC-hHHHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876443221 122234556788 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|||+||++|++.+||.. +++.++.+ ++.+|||+||.|.
T Consensus 616 KP~~~GsS~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~i~~g--------------- 658 (809)
T PRK14573 616 KTAHLGSSIGVFEVHNVEELRD---KISEAFLY-------------------DTDVFVEESRLGS--------------- 658 (809)
T ss_pred eeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEeccCCC---------------
Confidence 9999999999999999999885 78877765 5789999998762
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcccccccccc-CCC--ceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ-GGT--GINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~-~g~--~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
+|++|+|+++......+.+..++....+||||++||. .+. ....+|++ +++++.++++++|.+++
T Consensus 659 ---------rEi~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~ 726 (809)
T PRK14573 659 ---------REIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD---LSKESQEQVLELAERIY 726 (809)
T ss_pred ---------EEEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC---CCHHHHHHHHHHHHHHH
Confidence 4999999997654333334455555567999999995 333 23345766 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
++|||+|++|||||++. +|++|||||||+||||+.|.+|++|.++ |..| .+|+++||+.|++|+
T Consensus 727 ~aLg~~G~~riDf~v~~-~g~~yv~EiNt~PG~t~~s~~p~~~~~~-G~~~-~~li~~ii~~a~~r~ 790 (809)
T PRK14573 727 RLLQGKGSCRIDFFLDE-EGNFWLSEMNPIPGMTEASPFLTAFVRK-GWTY-EQIVHQLIIDGLHKF 790 (809)
T ss_pred HHhCCceEEEEEEEEcC-CCCEEEEEeeCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHHHHh
Confidence 99999999999999985 6899999999999999999888887666 4556 699999999999885
|
|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=462.18 Aligned_cols=298 Identities=27% Similarity=0.366 Sum_probs=254.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+|||||.|+||+|||.||++++++|++.||+|..++++.+ +.. . .
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~--~~~-----------------------------~-~ 48 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDED--FLK-----------------------------K-V 48 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCch--HHH-----------------------------H-h
Confidence 5899999999999999999999999999999999998876442 100 0 0
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
.. ..++|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+ +|||||++..+.... ..
T Consensus 49 ~~-~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~- 121 (299)
T PRK14571 49 DQ-LKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KT- 121 (299)
T ss_pred hh-ccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEechh----hh-
Confidence 00 126999999999999999999999999999999999999999999999999998 589999998875321 00
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
..++||+||||+.+|||+||.+|+|.+|+.+.+.+.+. .++.+|||+||+| +|++|.+++++ +..
T Consensus 122 --------~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~vlVEeyI~G-~E~sv~vl~~~----~~~ 186 (299)
T PRK14571 122 --------SPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP--RYGSVIVQEYIPG-REMTVSILETE----KGF 186 (299)
T ss_pred --------hhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHh--hCCcEEEEccccc-eEEEEEEEcCC----CCe
Confidence 23689999999999999999999999998877765543 4568999999997 99999999632 234
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~ 397 (953)
.++++.|+.. ...+|+|..||..+. +.+.+|+.+++++.++|++.|.+++++|||+|++||||++
T Consensus 187 ~vl~~~e~~~----------~~~~~~~~~k~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~---- 251 (299)
T PRK14571 187 EVLPILELRP----------KRRFYDYVAKYTKGE-TEFILPAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIF---- 251 (299)
T ss_pred eeeceEEEec----------CCCccccccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE----
Confidence 5666665542 345889999997654 6677899999999999999999999999999999999976
Q ss_pred CccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+ +|++||+|||++|||+++|.+|++|++.|++|.+|+..||+.|++|
T Consensus 252 -------------~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a~~~ 298 (299)
T PRK14571 252 -------------S-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSAFLK 298 (299)
T ss_pred -------------E-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3 5789999999999999999999999999999999999999999865
|
|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=451.51 Aligned_cols=295 Identities=23% Similarity=0.344 Sum_probs=244.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|+++||+||+||.|+||+||+.||++|..+|++ .+|+++++.++. .|.+
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~~---------------------~~~~--------- 49 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDASG---------------------KELV--------- 49 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCCc---------------------hhHH---------
Confidence 357899999999999999999999999999975 899998663311 0100
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
. .+ ....+|+||+++||..||
T Consensus 50 -~--------~l--------------------------------------------------~~~~~d~vf~~lhG~~ge 70 (296)
T PRK14569 50 -A--------KL--------------------------------------------------LELKPDKCFVALHGEDGE 70 (296)
T ss_pred -H--------Hh--------------------------------------------------hccCCCEEEEeCCCCCCC
Confidence 0 00 011369999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+.... ...+.+ +||+||
T Consensus 71 ~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~---l~~~gIptp~~~~~~~~~-----------~~~~~~-~~P~vV 135 (296)
T PRK14569 71 NGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEI---LMHHRMPTPMAKFLTDKL-----------VAEDEI-SFPVAV 135 (296)
T ss_pred ChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCeEEEchhh-----------hhHhhc-CCCEEE
Confidence 99999999999999999999999999999999999 999999999998775321 113567 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|+|.||++|++.+||.. +++.++.+ +.+|||+||+|+
T Consensus 136 KP~~ggss~Gv~~v~~~~eL~~---a~~~~~~~--------------------~~~lvEefI~G~--------------- 177 (296)
T PRK14569 136 KPSSGGSSIATFKVKSIQELKH---AYEEASKY--------------------GEVMIEQWVTGK--------------- 177 (296)
T ss_pred EeCCCCCCcCeEEcCCHHHHHH---HHHHHHhc--------------------CCEEEEcccccE---------------
Confidence 9999999999999999999885 56665432 469999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+++++. ..+.+++.+...+|+|+.||. +.+...+|+. ++++..+++++.|++++++|
T Consensus 178 ----------E~tv~vl~~~-----~~~~~~i~~~~~~~~~~~k~~-~~~~~~~P~~---l~~~~~~~i~~~a~~~~~~L 238 (296)
T PRK14569 178 ----------EITVAIVNDE-----VYSSVWIEPQNEFYDYESKYS-GKSIYHSPSG---LCEQKELEVRQLAKKAYDLL 238 (296)
T ss_pred ----------EEEEEEECCc-----CcceEEEecCCCcCChhhccC-CCcEEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999764 223445555567999999996 4456667876 57888899999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
||+|++||||+++. +|++|||||||+||||+.|.++.+|.++ |..| .+|+.+||+.|
T Consensus 239 g~~G~~rvD~~~~~-~g~~~vlEIN~~Pg~t~~s~~~~~~~~~-G~~~-~~li~~ii~~a 295 (296)
T PRK14569 239 GCSGHARVDFIYDD-RGNFYIMEINSSPGMTDNSLSPKSAAAE-GVDF-DSFVKRIIEQA 295 (296)
T ss_pred CCceEEEEEEEEcC-CCCEEEEEeeCCCCCCCcCHHHHHHHHc-CCCH-HHHHHHHHHhc
Confidence 99999999999985 6899999999999999999888877766 4456 69999999876
|
|
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=446.30 Aligned_cols=313 Identities=31% Similarity=0.426 Sum_probs=266.8
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchh
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 570 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 570 (953)
+.+|+|++||.|.||+||+.||.+|+.+|+. .+|+++++.+++++. |.+...
T Consensus 2 ~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~-~~~~~~~~~~~~~~~-------------------~~~~~~-------- 53 (317)
T COG1181 2 KMKVAVLLGGRSAEREVSLLSAKAVLRALKG-FGYDVTPVDITEAGL-------------------WMLDKE-------- 53 (317)
T ss_pred ceEEEEeeCCccccceEEEecHHHHHHHHhh-cCceeEEEeccccce-------------------EEeccc--------
Confidence 5789999999999999999999999999976 899999999988643 432110
Q ss_pred hHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCcc
Q 002207 571 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDG 650 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg 650 (953)
. + + ....++|+|||.+||.+||||
T Consensus 54 -~---------~----------------------~------------------------~~~~~~~vvfp~lhG~~gEDg 77 (317)
T COG1181 54 -V---------T----------------------K------------------------RVLQKADVVFPVLHGPYGEDG 77 (317)
T ss_pred -c---------c----------------------h------------------------hhcccCCEEEEeCCCCCCCCc
Confidence 0 0 0 011235899999999999999
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
++|++||.+|+||||+++.+|+.+|||..+|++ ++..|+|++++..+...++. ...+++....+ +||+||||
T Consensus 78 ~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~---~~~~g~~~a~~~~~~~~~~~----~~~~e~~~~~l-~~p~~Vkp 149 (317)
T COG1181 78 TIQGLLELLGIPYVGKGVLASAGAMDKIVTKRL---FKAEGLPVAPYVALTRDEYS----SVIVEEVEEGL-GFPLFVKP 149 (317)
T ss_pred hHHHHHHHhCCCEecCchhhhhhcccHHHHHHH---HHHCCCCccceeeeecccch----hHHHHHhhccc-CCCEEEEc
Confidence 999999999999999999999999999999999 89999999999999876541 23355667788 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
++.|||.|++++++..|+.. +++.++++ ++++|+|+|+.|+
T Consensus 150 ~~~gSSvg~~~v~~~~d~~~---~~e~a~~~-------------------d~~vl~e~~~~~r----------------- 190 (317)
T COG1181 150 AREGSSVGRSPVNVEGDLQS---ALELAFKY-------------------DRDVLREQGITGR----------------- 190 (317)
T ss_pred CCccceeeEEEeeeccchHH---HHHHHHHh-------------------CCceeeccCCCcc-----------------
Confidence 99999999999999999986 78888877 7899999999987
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecC-CccccccccccC-CCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQG-GTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~-~~~~d~~~Ky~~-g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+++++.... ...+..++... ..||||++||.. |.+...+|++ +++++.++++++|.+++++|
T Consensus 191 --------ei~v~vl~~~~~~-~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~---lt~~~~~~i~~lA~~a~~al 258 (317)
T COG1181 191 --------EIEVGVLGNDYEE-QALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG---LTDEIHEEIKELALRAYKAL 258 (317)
T ss_pred --------eEEEEecCCcccc-eecCceEEecCCCeEEeeeccccCCCCceeeCCCC---CCHHHHHHHHHHHHHHHHhc
Confidence 9999999986633 34455566655 689999999998 6667788886 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
||.|++|+|||+++++|++|+|||||+||||++|.+|+++.+.+ ..| .+|+.+++++|
T Consensus 259 g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~g-i~~-~~L~~~~~e~a 316 (317)
T COG1181 259 GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAG-ISF-AILVLRFVELA 316 (317)
T ss_pred CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcC-CCH-HHHHHHHHhhc
Confidence 99999999999995358999999999999999998888888775 355 58888888876
|
|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=428.43 Aligned_cols=298 Identities=27% Similarity=0.369 Sum_probs=249.6
Q ss_pred eEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhh
Q 002207 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571 (953)
Q Consensus 492 ~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 571 (953)
+||+|||||.|+||+|||.||.+|..+|++ .+|++.++.++++ |
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~~---------------------~-------------- 44 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDED---------------------F-------------- 44 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCch---------------------H--------------
Confidence 479999999999999999999999999975 7999988754221 0
Q ss_pred HHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccH
Q 002207 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~ 651 (953)
.. .+ . ...++|+||+++||.+||||.
T Consensus 45 -~~----~~-----------------------~--------------------------~~~~~D~v~~~~~g~~ge~~~ 70 (299)
T PRK14571 45 -LK----KV-----------------------D--------------------------QLKSFDVVFNVLHGTFGEDGT 70 (299)
T ss_pred -HH----Hh-----------------------h--------------------------hccCCCEEEEeCCCCCCCccH
Confidence 00 00 0 011369999999999999999
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
+|++||.+|+||+|+++.++++|+||..||++ |+ +|||||++..+.... ....+ +||+||||+
T Consensus 71 ~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~---l~-~~ip~p~~~~~~~~~------------~~~~l-~~P~vvKP~ 133 (299)
T PRK14571 71 LQAILDFLGIRYTGSDAFSSMICFDKLLTYRF---LK-GTVEIPDFVEIKEFM------------KTSPL-GYPCVVKPR 133 (299)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---Hh-cCCCCCCEEEEechh------------hhhhc-CCCEEEecC
Confidence 99999999999999999999999999999998 77 589999998875321 12457 699999999
Q ss_pred CCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhh
Q 002207 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811 (953)
Q Consensus 732 ~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~ 811 (953)
.+++|.||.+|++.+||.+ +++..+.. .+.+||||||+|+
T Consensus 134 ~g~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~vlVEeyI~G~------------------ 173 (299)
T PRK14571 134 REGSSIGVFICESDEEFQH---ALKEDLPR-------------------YGSVIVQEYIPGR------------------ 173 (299)
T ss_pred CCCCcCCEEEECCHHHHHH---HHHHHHhh-------------------CCcEEEEccccce------------------
Confidence 9999999999999999875 55555433 4579999999997
Q ss_pred cCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 002207 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891 (953)
Q Consensus 812 ~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~ 891 (953)
|++|+++++++... +.|..++.....+|+|+.||..+.+...+|++ +++++.+++++.+.+++++|||+
T Consensus 174 -------E~sv~vl~~~~~~~-vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg~~ 242 (299)
T PRK14571 174 -------EMTVSILETEKGFE-VLPILELRPKRRFYDYVAKYTKGETEFILPAP---LNPEEERLVKETALKAFVEAGCR 242 (299)
T ss_pred -------EEEEEEEcCCCCee-eeceEEEecCCCccccccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999866543 45556666666799999999887777778876 68999999999999999999999
Q ss_pred ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 892 G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
|++||||+++ +|++||+||||+||||+.|.++.+|.++ |..| .+|+.+||+.|++|
T Consensus 243 g~~rvD~~~~--~~~~~viEiN~~Pg~~~~s~~~~~~~~~-G~~~-~~li~~ii~~a~~~ 298 (299)
T PRK14571 243 GFGRVDGIFS--DGRFYFLEINTVPGLTELSDLPASAKAG-GIEF-EELVDIIIKSAFLK 298 (299)
T ss_pred ceEEEEEEEE--CCcEEEEEeeCCCCCCccCHHHHHHHHc-CCCH-HHHHHHHHHHHHhc
Confidence 9999999997 5789999999999999999888888765 4566 69999999999876
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=432.26 Aligned_cols=313 Identities=30% Similarity=0.438 Sum_probs=254.8
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+|||||.|.||++|+.|+.+++++|++.||+|+++++++++.|... ++...+.. . .
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-----------~~~~~~~~----------~-~ 58 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYK-----------DLPQLILE----------L-G 58 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCcccccc-----------chHHHHhh----------c-c
Confidence 699999999999999999999999999999999999999887654210 00000000 0 0
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec-CCccchhh-h
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESE-L 236 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~-~~~~~~~~-~ 236 (953)
....++|+|||++||..|||+.+|++||.+|+||+|+++.++.+|+||..++++|+++|||+|++..+. ..+..... .
T Consensus 59 ~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 138 (315)
T TIGR01205 59 ALLEGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELEC 138 (315)
T ss_pred ccCCCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhH
Confidence 011379999999999999999999999999999999999999999999999999999999999999887 32211100 0
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
..+. ..++||+||||..+++|.||.+++|.+++.+.+...+ .++..+|||+||+| +|++|.+++++ ...
T Consensus 139 ~~~~-----~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~i~G-~e~~v~vi~~~---~~~ 207 (315)
T TIGR01205 139 EQVA-----EPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAF--EYDEEVLVEQFIKG-RELEVSILGNE---EAL 207 (315)
T ss_pred HHHH-----HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH--hcCCcEEEEcCCCC-EEEEEEEECCC---Ccc
Confidence 1111 2368999999999999999999999999887766554 36678999999997 99999999521 111
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
+++..+.+ ...+|+|..||..+. +.+.+|+.+++++.++|++.|.+++++||++|++||||++
T Consensus 208 ~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~--- 270 (315)
T TIGR01205 208 PIIEIVPE-------------IEGFYDYEAKYLDGS-TEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFL--- 270 (315)
T ss_pred ceEEecCC-------------CCCeeCcccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE---
Confidence 22211111 123788999998665 6677899999999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+++|++||+|||++|||+++|++|++++++|++|.+++..||+.|
T Consensus 271 --------------~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii~~~ 315 (315)
T TIGR01205 271 --------------DEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVERILELA 315 (315)
T ss_pred --------------eCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999999999864
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=410.43 Aligned_cols=300 Identities=30% Similarity=0.400 Sum_probs=256.0
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|+|||.|+||++||.|++++.+||++.||+|++++.+.+. .. .
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~-----------------~~---------------~ 51 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDI-----------------AA---------------Q 51 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcch-----------------HH---------------H
Confidence 469999999999999999999999999999999999988654320 00 0
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
. ...++|+||+.+||.+|+|+.++++||.+|+||+|++..++++|+||..+|++|+++|||+|++..+.+.+. +
T Consensus 52 ~--~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~----~ 125 (304)
T PRK01372 52 L--KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREED----L 125 (304)
T ss_pred h--ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcch----H
Confidence 0 023799999999999999999999999999999999999999999999999999999999999999877543 1
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
.... +.++||+||||..+++|.||.++++.+|+.+.+.+.. .++..+|||+||+| +|++|.++++ .
T Consensus 126 ~~~~-----~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~i~G-~E~~v~vi~~----~-- 191 (304)
T PRK01372 126 LAAI-----DKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAF--KYDDEVLVEKYIKG-RELTVAVLGG----K-- 191 (304)
T ss_pred HHHH-----hhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEEEcccCC-EEEEEEEECC----C--
Confidence 2222 2368899999999999999999999999877665543 35778999999997 9999999952 1
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+++.++.. ..++++|..||..+. ....+|+.++++..+++++++.+++++||++|++||||++
T Consensus 192 --~~~~~~~~~----------~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~--- 255 (304)
T PRK01372 192 --ALPVIEIVP----------AGEFYDYEAKYLAGG-TQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFML--- 255 (304)
T ss_pred --ccceEEEEe----------cCCEEeeeccccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE---
Confidence 122223321 345889999997665 5677888899999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+|||++|||+++|.+|.+++.+|++|.+++..||+.|+.|
T Consensus 256 --------------~~~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~ii~~a~~~ 303 (304)
T PRK01372 256 --------------DEDGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRILEDALCD 303 (304)
T ss_pred --------------cCCCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999999999999876
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=396.96 Aligned_cols=312 Identities=31% Similarity=0.492 Sum_probs=248.8
Q ss_pred EEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhH
Q 002207 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 572 (953)
Q Consensus 493 ~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 572 (953)
||+|+|||.|.||+||+.|+..|.++|++ .+|++++|.+.+.+.|. . . +.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~-~g~~v~~i~~~~~~~~~-------------------~-~---------~~ 50 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRD-LGYDVYPVDIDKMGSWT-------------------Y-K---------DL 50 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhh-cCCEEEEEeecCCcccc-------------------c-c---------ch
Confidence 69999999999999999999999999975 79999999887653221 0 0 00
Q ss_pred HHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccHH
Q 002207 573 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTL 652 (953)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~i 652 (953)
.+ . +. . . . . ....+|+|||++||..|||+++
T Consensus 51 ~~-~---~~-----------------------~---~-~----~--------------~~~~~D~v~~~~~g~~~~~~~~ 81 (315)
T TIGR01205 51 PQ-L---IL-----------------------E---L-G----A--------------LLEGIDVVFPVLHGRYGEDGTI 81 (315)
T ss_pred HH-H---Hh-----------------------h---c-c----c--------------cCCCCCEEEEecCCCCCCCcHH
Confidence 00 0 00 0 0 0 0 0124799999999999999999
Q ss_pred HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEe-CccccCCchhhH-HHHHHhhcCCCcEEEec
Q 002207 653 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR-KEDLLKTPIVDI-WHELTSKLQCKTLCVKP 730 (953)
Q Consensus 653 q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~-~~~~~~~~~~~~-~~~~~~~lg~~PlvVKP 730 (953)
|++||.+|+||+|+++.++++|+||..|+++ |+++|||||++..++ ..+.. .+. ...+...+ +||+||||
T Consensus 82 ~~~le~~gip~~g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~~~~----~~~~~~~~~~~~-~~P~vvKP 153 (315)
T TIGR01205 82 QGLLELMGIPYTGSGVLASALSMDKLLTKLL---WKALGLPTPDYIVLTQNRASA----DELECEQVAEPL-GFPVIVKP 153 (315)
T ss_pred HHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEecccccc----hhhhHHHHHHhc-CCCEEEEe
Confidence 9999999999999999999999999999999 999999999999887 32210 111 12334567 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
..+++|.||+++++.+++.. +++.++.+ ...+|||+||+|+
T Consensus 154 ~~~~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvEe~i~G~----------------- 194 (315)
T TIGR01205 154 AREGSSVGVSKVKSEEELQA---ALDEAFEY-------------------DEEVLVEQFIKGR----------------- 194 (315)
T ss_pred CCCCCccCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEcCCCCE-----------------
Confidence 99999999999999998885 55555543 5679999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCC-ccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~-~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
|++|.++++++. .+.+.+.... .+|+|..||..+.+...+|++ +++++.++|++.+.+++++||
T Consensus 195 --------e~~v~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg 259 (315)
T TIGR01205 195 --------ELEVSILGNEEA----LPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP---LDEELEEKIKELALKAYKALG 259 (315)
T ss_pred --------EEEEEEECCCCc----cceEEecCCCCCeeCcccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHhC
Confidence 999999986432 1223333222 288999999877666677875 688999999999999999999
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
++|++||||+++. +|++||+|||++|||++.|.++.+|.+++ ..| .+++..||+.|
T Consensus 260 ~~G~~~vD~~~~~-~g~~~viEvN~~pg~~~~s~~~~~~~~~G-~~~-~~l~~~ii~~~ 315 (315)
T TIGR01205 260 CRGLARVDFFLDE-EGEIYLNEINTIPGMTAISLFPKAAAAAG-IEF-SQLVERILELA 315 (315)
T ss_pred CCceEEEEEEEeC-CCCEEEEEeeCCCCCCCccHHHHHHHHcC-CCH-HHHHHHHHhcC
Confidence 9999999999985 67999999999999999998888888775 455 69999999864
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=376.72 Aligned_cols=302 Identities=30% Similarity=0.452 Sum_probs=252.8
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.++||+|++||.|.||++|+.|+..++.+|++ .+|++..|..+.+ .+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~~--------------------~~----------- 49 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGED--------------------IA----------- 49 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCcc--------------------hH-----------
Confidence 345699999999999999999999999999975 7899887633210 00
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
. . + ....+|+||+.+||.+||
T Consensus 50 --~-------~------------------------------------------------~--~~~~~D~v~~~~~g~~~~ 70 (304)
T PRK01372 50 --A-------Q------------------------------------------------L--KELGFDRVFNALHGRGGE 70 (304)
T ss_pred --H-------H------------------------------------------------h--ccCCCCEEEEecCCCCCC
Confidence 0 0 0 012469999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
|+.+|++||.+|+||+|++..++++|+||..+|++ |+++|||+|++..+.+.+. +....+.+ +||+||
T Consensus 71 ~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~~--------~~~~~~~~-~~P~iv 138 (304)
T PRK01372 71 DGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLV---WQAAGLPTPPWIVLTREED--------LLAAIDKL-GLPLVV 138 (304)
T ss_pred ccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEEeCcch--------HHHHHhhc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876541 33445678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||..+++|.||.++++.+++.+ +++....+ ...+|||+||+|+
T Consensus 139 KP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvEe~i~G~--------------- 181 (304)
T PRK01372 139 KPAREGSSVGVSKVKEEDELQA---ALELAFKY-------------------DDEVLVEKYIKGR--------------- 181 (304)
T ss_pred eeCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcccCCE---------------
Confidence 9999999999999999998875 44444332 5679999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.++++. ..+.+++...+++++|..||..+.....+|+. ++++..+++++.+.+++++|
T Consensus 182 ----------E~~v~vi~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---~~~~~~~~l~~~a~~~~~~l 243 (304)
T PRK01372 182 ----------ELTVAVLGGK-----ALPVIEIVPAGEFYDYEAKYLAGGTQYICPAG---LPAEIEAELQELALKAYRAL 243 (304)
T ss_pred ----------EEEEEEECCC-----ccceEEEEecCCEEeeeccccCCCeEEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999864 33444555556688999999877777777765 68899999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
|++|++||||+++. +|++||+|||++|||++.|.++.++..+ |..| .+++..||+.|+.|
T Consensus 244 g~~g~~~iD~~~~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~-g~~~-~~~~~~ii~~a~~~ 303 (304)
T PRK01372 244 GCRGWGRVDFMLDE-DGKPYLLEVNTQPGMTSHSLVPMAARAA-GISF-SELVDRILEDALCD 303 (304)
T ss_pred CCcceEEEEEEEcC-CCCEEEEEecCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHhhc
Confidence 99999999999985 6999999999999999999888888777 5566 69999999999976
|
|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=331.73 Aligned_cols=202 Identities=29% Similarity=0.427 Sum_probs=166.1
Q ss_pred HHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEE
Q 002207 212 EMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291 (953)
Q Consensus 212 ~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vl 291 (953)
+|+++|||||+|+++...+.....+.+... .++||+||||+++|||+||++|++.+|+.+++.+++ .+++++|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~-----~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~--~~~~~vl 73 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILE-----DLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAF--KYDDDVL 73 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHH-----HHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHT--TTHSEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHh-----hcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHh--hhcceEE
Confidence 578999999999999987654333223322 367899999999999999999999999988887765 4889999
Q ss_pred EeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccC-CCceEEEcCCCCCHHHHHHH
Q 002207 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP-TQQVAYHTPPRFPIVVINSI 370 (953)
Q Consensus 292 VEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~-~~~~~~~~Pa~l~~~~~~~i 370 (953)
||+||+| +|++|+|+++ +.+.++++.|+.. ..+||||++||.. +..+.+.+|+.+++++.++|
T Consensus 74 VEefI~G-~E~tv~vl~~-----~~~~~~~~~ei~~----------~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i 137 (203)
T PF07478_consen 74 VEEFISG-REFTVGVLGN-----GEPRVLPPVEIVF----------PSEFYDYEAKYQPADSETEYIIPADLSEELQEKI 137 (203)
T ss_dssp EEE--SS-EEEEEEEEES-----SSTEEEEEEEEEE----------SSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHH
T ss_pred EEeeecc-cceEEEEEec-----CCcccCceEEEEc----------CCCceehhheeccCCCceEEEecCCCCHHHHHHH
Confidence 9999997 9999999962 2367888887764 4589999999954 34478889999999999999
Q ss_pred HHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHH
Q 002207 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 450 (953)
Q Consensus 371 ~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~ 450 (953)
+++|.++|++|||+|++||||++ +++|++||+||||+||||++|+||++|++.|++|.+|+++
T Consensus 138 ~~~a~~a~~~lg~~~~~RiD~rv-----------------~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~ 200 (203)
T PF07478_consen 138 KEIAKKAFKALGCRGYARIDFRV-----------------DEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIER 200 (203)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEEE-----------------ETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCceeEEEEe-----------------ccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999987 6789999999999999999999999999999999999999
Q ss_pred HHH
Q 002207 451 IIG 453 (953)
Q Consensus 451 li~ 453 (953)
||+
T Consensus 201 iie 203 (203)
T PF07478_consen 201 IIE 203 (203)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=311.05 Aligned_cols=200 Identities=27% Similarity=0.444 Sum_probs=162.4
Q ss_pred HHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCC
Q 002207 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNS 766 (953)
Q Consensus 687 l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~ 766 (953)
|+++|||||+|.++.+.++.. ...++....+ +||+||||+++|||.||++|++.+||.. ++++++++
T Consensus 2 ~~~~gI~tp~~~~~~~~~~~~----~~~~~~~~~l-~~P~~VKP~~~GsS~Gi~~v~~~~el~~---ai~~~~~~----- 68 (203)
T PF07478_consen 2 LKSAGIPTPPYVVVKKNEDDS----DSIEKILEDL-GFPLFVKPASEGSSIGISKVHNEEELEE---AIEKAFKY----- 68 (203)
T ss_dssp HHHTT-BB-SEEEEETTSHHH----HHHHHHHHHH-SSSEEEEESSTSTTTTEEEESSHHHHHH---HHHHHTTT-----
T ss_pred hhhcCCCCCCEEEEecccccc----hhHHHHHhhc-CCCEEEEECCCCccEEEEEcCCHHHHHH---HHHHHhhh-----
Confidence 789999999999999876422 2234566788 6999999999999999999999999885 78888765
Q ss_pred cccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcc
Q 002207 767 FSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 846 (953)
Q Consensus 767 ~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~ 846 (953)
++.+|||+||+|+ |++|+|++++. .. +.|..++....+|
T Consensus 69 --------------~~~vlVEefI~G~-------------------------E~tv~vl~~~~-~~-~~~~~ei~~~~~~ 107 (203)
T PF07478_consen 69 --------------DDDVLVEEFISGR-------------------------EFTVGVLGNGE-PR-VLPPVEIVFPSEF 107 (203)
T ss_dssp --------------HSEEEEEE--SSE-------------------------EEEEEEEESSS-TE-EEEEEEEEESSSE
T ss_pred --------------cceEEEEeeeccc-------------------------ceEEEEEecCC-cc-cCceEEEEcCCCc
Confidence 6899999999997 99999999654 43 4566777778899
Q ss_pred cccccccc--CCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchH
Q 002207 847 LSLEEKFQ--GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924 (953)
Q Consensus 847 ~d~~~Ky~--~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l 924 (953)
|||++||. ++.....+|+. +++++.++|+++|++++++|||+|++|||||++. +|++||+||||+||||+.|.+
T Consensus 108 ~d~~~Ky~~~~~~~~~~~pa~---l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~-~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 108 YDYEAKYQPADSETEYIIPAD---LSEELQEKIKEIAKKAFKALGCRGYARIDFRVDE-DGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp EEHHHHHSGCCSCEEEESS-S---S-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEET-TTEEEEEEEESS-G-STTSHH
T ss_pred eehhheeccCCCceEEEecCC---CCHHHHHHHHHHHHHHHHHHcCCCceeEEEEecc-CCceEEEeccCcccccCCCHH
Confidence 99999994 46667788887 6899999999999999999999999999999985 799999999999999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHH
Q 002207 925 IHQALSEQPPMYPHQFFRKVLD 946 (953)
Q Consensus 925 ~~~a~~~~~~~yp~~l~~~li~ 946 (953)
+++|.+++ ..| .+|+++||+
T Consensus 184 p~~~~~~G-~sy-~~li~~iie 203 (203)
T PF07478_consen 184 PRMAEAAG-ISY-EDLIERIIE 203 (203)
T ss_dssp HHHHHHTT---H-HHHHHHHHH
T ss_pred HHHHHHcC-CCH-HHHHHHHhC
Confidence 88887664 455 699998885
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=312.94 Aligned_cols=626 Identities=17% Similarity=0.181 Sum_probs=429.5
Q ss_pred cCeEEEEe-c----CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLIC-G----GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~-G----G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||.||. | |+..|+|+| |.+.++||++++...+.+ +++-.....+ ...+|.-..+ +.+..+
T Consensus 377 ~~kVlvlGSGGLsIGQAGEFDYS---GsQAiKAlkEe~i~TiLi--NPNIAtvQts------~~lAD~vyfl-pvT~~~- 443 (1435)
T KOG0370|consen 377 VKKVLVLGSGGLSIGQAGEFDYS---GSQAIKALKEENIFTILI--NPNIATVQTS------KGLADKVYFL-PVTPEY- 443 (1435)
T ss_pred ccEEEEEccCCccccccceeeee---HHHHHHhhhhcccEEEEE--CCcccccccc------cccceEEEEe-ecCHHH-
Confidence 46899984 5 456899997 999999999998876654 4442222111 1122211111 111100
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.-..+ ..++||.+...+.|+.+.+-.+ +++++.+|+...|.+..+...+.|+..+.+.|++.+.+..++...+
T Consensus 444 -vt~vi--~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~ 520 (1435)
T KOG0370|consen 444 -VTKVI--KAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVS 520 (1435)
T ss_pred -HHHHH--HhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHh
Confidence 00111 2458999999999999988655 5899999999999999999999999999999999999999988776
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
.-+....+. +.++||++|+.+..-++.|-..++|++|+.+.+...++ ..+++|||+-+.||+|++..|+
T Consensus 521 sie~al~aa---------e~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a--~s~QilvekSlkGwkevEyevv 589 (1435)
T KOG0370|consen 521 TIEEALEAA---------ERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALA--LSPQILVEKSLKGWKEVEYEVV 589 (1435)
T ss_pred HHHHHHHHH---------HhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccc--cCceeeehhhhccccceEEEEE
Confidence 644322221 24789999999999999999999999999988887664 6789999999999999999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
+|..+|+ +..+ +.+.||.-.-++. .+....|++ ++++.++.+|..|.++.|.||..|-
T Consensus 590 rDa~~nc---iTvc----------------nmen~DplgihtG--dSiVvapsqtlsd~ey~mlrttaikVirhlgvvGE 648 (1435)
T KOG0370|consen 590 RDAYDNC---ITVC----------------NMENFDPLGIHTG--DSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGE 648 (1435)
T ss_pred eccccch---hhhc----------------CCcccCcceeecc--ceEEEeeccccChHHHHHHHhcchhheeccCCccc
Confidence 9876553 2211 3445665555543 356778887 9999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcch-------HHH------------------------
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF-------LFQ------------------------ 435 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~-------~p~------------------------ 435 (953)
++|++.+.|. .-+++++|||.+- .+.|- ||.
T Consensus 649 cniQyaL~p~----------------s~~y~IiEVNarL--SrssaLASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T 710 (1435)
T KOG0370|consen 649 CNIQYALNPY----------------SLEYRIIEVNARL--SRSSALASKATGYPLAYTAAKLALGIPLPELKNSVTKTT 710 (1435)
T ss_pred ccceeeeccc----------------ceeEEEEEEEeEE--eehhhhhccCccCcHHHHHHHHhcCcccccCCcccccce
Confidence 9999987542 2369999999721 11111 110
Q ss_pred --------------------------------------HHHHhCCCHHHHHHHHHHHH---hhhC----------CCCCC
Q 002207 436 --------------------------------------QASKVGFSHSNILRTIIGHA---CSRF----------PNLAS 464 (953)
Q Consensus 436 --------------------------------------~a~~~G~s~~~ll~~li~~a---~~r~----------~~~~~ 464 (953)
...+.|-+|++-+++.++.. +.-| ..|..
T Consensus 711 ~AcFEpslDY~v~KiprWDl~kf~~vs~~igssmKSvgEvm~iGR~feea~QKalr~vd~~~~Gf~~~~~~~~~~~eL~~ 790 (1435)
T KOG0370|consen 711 TACFEPSLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVGEVMAIGRTFEEAFQKALRMVDPSLLGFMSTPFLDDLDEELST 790 (1435)
T ss_pred ecccCcchhheeeecccccHHHHHHHHHhhchhhhhhhhhhhhhhhHHHHHHHHHhhcChhhcCcccccchhhHHHHhcC
Confidence 01133444444444333221 1001 01111
Q ss_pred CCCc--------------------------c--------------------------------------eeccccc----
Q 002207 465 YNSV--------------------------S--------------------------------------SHLPGRS---- 476 (953)
Q Consensus 465 ~~~~--------------------------~--------------------------------------~~~~~~~---- 476 (953)
|++. | .||...+
T Consensus 791 ptd~r~faia~a~~~~~svd~~~elt~IdkWFL~k~~~i~~~~~~l~~~~~~~l~~~ll~~AK~~GFsD~QIa~~i~s~E 870 (1435)
T KOG0370|consen 791 PTDRRVFAIAAALAKGYSVDRIHELTRIDKWFLYKLMNIVNIYKLLESHSLSSLPKELLLRAKKLGFSDKQIAKFIGSTE 870 (1435)
T ss_pred CccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHcCCcHHHHHHHhCccH
Confidence 1110 0 1111111
Q ss_pred -------------------ccCCCccccccCC----------------CceEEEEec-C----CCcccceeccccHHHHH
Q 002207 477 -------------------SGSKPTEALNKRE----------------GIREVFVIF-G----GDTSERQVSLMSGTNVW 516 (953)
Q Consensus 477 -------------------~~~~~~~~~~~~~----------------~~~~v~vl~-G----G~s~E~~vS~~s~~~v~ 516 (953)
+.... .|+..+ ...-+.||. | |.|.|.|.+.+++.
T Consensus 871 l~vR~~R~~~gi~P~VKqIDTvAa--E~Pa~TNYLY~tyn~~~hDv~F~~~g~mVlGsGvYrIGSSVEFDwcaV~~~--- 945 (1435)
T KOG0370|consen 871 LAVRRLRKELGIHPFVKQIDTVAA--EFPAQTNYLYTTYNATEHDVDFNEHGVMVLGSGVYRIGSSVEFDWCAVGCA--- 945 (1435)
T ss_pred HHHHHHHHhcCCCchhhhhhhhhh--cCccccceEEEEecCcccccccCCCceEEEcccceecccceeechhhhhHH---
Confidence 11110 111100 011234433 2 56778877777664
Q ss_pred HHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCcccccccccccccee
Q 002207 517 LNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVV 596 (953)
Q Consensus 517 ~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (953)
+.|+. .++..+.|..+|+.
T Consensus 946 rtLr~-~g~kTimvNyNPET------------------------------------------------------------ 964 (1435)
T KOG0370|consen 946 RTLRK-LGKKTIMVNYNPET------------------------------------------------------------ 964 (1435)
T ss_pred HHHHH-cCCceEEEecCccc------------------------------------------------------------
Confidence 55653 56667766666641
Q ss_pred ccccccccccccccccccccCCCC-ccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHh
Q 002207 597 NDLVEGLKKHSWFTGFDIADELPM-RHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674 (953)
Q Consensus 597 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~ 674 (953)
.++ .||..|.+++ .++++.+++. ..|...-+++.+.|+.-. .|.--|...|+...|.++....-+
T Consensus 965 ------VST-----DyDecdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~A 1031 (1435)
T KOG0370|consen 965 ------VST-----DYDECDRLYFEEISYERVMDIYELENSEGIIISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSA 1031 (1435)
T ss_pred ------ccC-----chHHHhhHhHhhhhhhhhhhhhhhccCCceEEEecCcCcc--hhhhHhHhcCCeEecCChHhhhhh
Confidence 000 0111111111 1122222222 235566788888887766 466667889999999999999999
Q ss_pred cChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHH
Q 002207 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754 (953)
Q Consensus 675 ~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~a 754 (953)
.|++.+.++ |.+.||.+|+|.-+++- +...++.+++ +|||+|.|+.--|+..+..+.+.+||+.|
T Consensus 1032 EnR~kFS~~---Ld~i~v~Qp~Wkelt~~--------~eA~~F~~~V-gYP~lvRPSYVLSGaAMnv~~~~~dl~~~--- 1096 (1435)
T KOG0370|consen 1032 ENRFKFSRM---LDSIGVDQPAWKELTSL--------EEAKKFAEKV-GYPVLVRPSYVLSGAAMNVVYSESDLKSY--- 1096 (1435)
T ss_pred hhHHHHHHH---HHHcCCCchhhhhhccH--------HHHHHHHHhc-CCceEecccceecchhhhhhhcHHHHHHH---
Confidence 999999999 99999999999877653 2346677889 69999999999999999999999999975
Q ss_pred HHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceee
Q 002207 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834 (953)
Q Consensus 755 l~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~ 834 (953)
++.+... +++.++++-+||+|. +|+.++.+..+|...+.
T Consensus 1097 L~~A~~v-----------------s~dhPVVisKfie~A------------------------kEidvDAVa~~G~~~~h 1135 (1435)
T KOG0370|consen 1097 LEQASAV-----------------SPDHPVVISKFIEGA------------------------KEIDVDAVASDGKVLVH 1135 (1435)
T ss_pred HHHHhhc-----------------CCCCCEEhHHhhccc------------------------ceechhhhccCCeEEEE
Confidence 5555443 237889999999997 69999999988876433
Q ss_pred CceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC
Q 002207 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 835 ~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt 914 (953)
.-+ +..++ +..+.|+...++|++ +++++..++|++.+.+++++|.+.|..+++|+.. ++++.|||.|-
T Consensus 1136 aiS-EHvEn-------AGVHSGDAtlv~Ppq--~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k--~n~lkVIECN~ 1203 (1435)
T KOG0370|consen 1136 AIS-EHVEN-------AGVHSGDATLVLPPQ--DLSADTLERIKDIAAKVAKALKITGPFNMQIIAK--DNELKVIECNV 1203 (1435)
T ss_pred ehh-hhhhc-------ccccCCceeEeCCch--hcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec--CCeEEEEEeee
Confidence 211 22222 235667777888887 5899999999999999999999999999999886 57999999996
Q ss_pred C
Q 002207 915 V 915 (953)
Q Consensus 915 ~ 915 (953)
+
T Consensus 1204 R 1204 (1435)
T KOG0370|consen 1204 R 1204 (1435)
T ss_pred e
Confidence 3
|
|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=298.41 Aligned_cols=284 Identities=17% Similarity=0.207 Sum_probs=206.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+||. ||+|+.|++.++++|++.||+|..++++.. ++..... ...+.+ .
T Consensus 1 m~~~i~~------~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~--~~~~~~~------~~~~~~--~------------- 51 (300)
T PRK10446 1 MKIAILS------RDGTLYSCKRLREAAIQRGHLVEILDPLSC--YMNINPA------ASSIHY--K------------- 51 (300)
T ss_pred CeEEEEe------cCCcchhHHHHHHHHHHcCCeEEEEehHHc--eEecCCC------cccEEE--C-------------
Confidence 5899998 999999999999999999999998765421 1110000 000000 0
Q ss_pred HhhccCcCEEEEcCCCCC---CCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 158 EHLAANVDIVFPTIHGRF---GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~---GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
.....++|+||+.+|+.. |+++ +.+||.+| +|+++++.++++|+||..++++|+++|||+|++..+.+.+
T Consensus 52 ~~~~~~~d~v~~~~~~~~~~~~~~~--~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~---- 124 (300)
T PRK10446 52 GRKLPHFDAVIPRIGTAITFYGTAA--LRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPD---- 124 (300)
T ss_pred CcccCCCCEEEEcCCCchhhHHHHH--HHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHH----
Confidence 000126999999999844 4454 77999999 7899999999999999999999999999999998875432
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccC---CCCeEEEEEEEEeCC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL---EGGSEFTAIVLDVGS 311 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI---~Gg~E~tv~Vl~~~~ 311 (953)
.+.+++... .+||+||||.++++|.||+++++.+++........ .++..+|||+|| .| +|++|.|++
T Consensus 125 ~~~~~~~~~----~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~--~~~~~~lvQe~I~~~~g-~d~rv~vig--- 194 (300)
T PRK10446 125 DTSDLIDMV----GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFR--GLNAHILVQEYIKEAQG-CDIRCLVVG--- 194 (300)
T ss_pred HHHHHHHHh----CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHH--hcCCCEEEEeeeccCCC-ceEEEEEEC---
Confidence 222332211 26799999999999999999999887654443322 356789999999 56 999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+ ++ +...++. + ... +|.++|..++ +. .|..++++ ++++|.+++++|||. ++||||
T Consensus 195 -~--~~--~~~~~r~--~--------~~~--~~~~n~~~g~-~~--~~~~l~~~----~~~~a~~a~~alg~~-~~gvD~ 249 (300)
T PRK10446 195 -D--EV--VAAIERR--A--------KEG--DFRSNLHRGG-AA--SVASITPQ----EREIAIKAARTMALD-VAGVDI 249 (300)
T ss_pred -C--EE--EEEEEEe--c--------CCC--chhheeccCC-ee--ccCCCCHH----HHHHHHHHHHHhCCC-EEEEEE
Confidence 2 22 2232222 1 111 6788887654 32 34456555 589999999999997 999998
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~ 456 (953)
++ +++| +||+|||++|||+. +++++|+++.+++...|....
T Consensus 250 ~~-----------------~~~g-~~vlEvN~~pg~~~------~~~~~g~~~~~~~~~~i~~~~ 290 (300)
T PRK10446 250 LR-----------------ANRG-PLVMEVNASPGLEG------IEKTTGIDIAGKMIRWIERHA 290 (300)
T ss_pred EE-----------------cCCC-cEEEEEECCCChhh------hHHHHCcCHHHHHHHHHHHhc
Confidence 75 5567 89999999999873 457889999888776665544
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=301.46 Aligned_cols=352 Identities=16% Similarity=0.186 Sum_probs=249.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.|++++.++-+.+........ +|..+.+.+.. ........
T Consensus 3 ~kvLIan~Gei---------a~~iiraar~lGi~~V~v~s~~d~~a~~~~~--------AD~~~~i~~~~~~~syld~~~ 65 (499)
T PRK08654 3 KKILIANRGEI---------AIRVMRACRELGIKTVAVYSEADKNALFVKY--------ADEAYPIGPAPPSKSYLNIER 65 (499)
T ss_pred ceEEEECCcHH---------HHHHHHHHHHcCCeEEEEeccccccccchhh--------CCEEEEcCCCCcccCccCHHH
Confidence 48999987754 7788999999999998887655432221110 11001110000 00001111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe--cCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL--QGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~--~~~~~~ 232 (953)
+.+. ...++|.|+|. +|...|+..++..|+.+|++|+|+++.++.++.||..+|++|+++|||+||+... .+.
T Consensus 66 i~~~a~~~~~daI~pg-~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~--- 141 (499)
T PRK08654 66 IIDVAKKAGADAIHPG-YGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDI--- 141 (499)
T ss_pred HHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCH---
Confidence 1111 13479999997 5788899999999999999999999999999999999999999999999998753 322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
+++.++.+ +++||+||||+.+|+|+||.+|++.+|+.+....... .-.++.++||+||+|++|+++.+++
T Consensus 142 -~e~~~~a~-----~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~ 215 (499)
T PRK08654 142 -EEAKEIAE-----EIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILA 215 (499)
T ss_pred -HHHHHHHH-----HhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEE
Confidence 22333332 3789999999999999999999999987665544321 1125689999999988999999998
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++.|+ .+.+...+. ....++. ......|+. +++++.++|++.|.+++++||+.|.+
T Consensus 216 d~~G~---vv~l~~rec-----------------siqrr~q---k~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~g 272 (499)
T PRK08654 216 DKHGN---VIHLGDREC-----------------SIQRRHQ---KLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAG 272 (499)
T ss_pred cCCCC---EEEEeeecc-----------------ccccCcc---ceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCce
Confidence 65443 332221110 1111111 133446764 89999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||++ .+|++||+||||+++.+. |.....+|++ |+..+|+.|+.....+.. .
T Consensus 273 tVEfl~------------------~~g~~yflEiNpRlqveh----~vte~~tGvD---lv~~~i~~A~G~~l~~~~~~~ 327 (499)
T PRK08654 273 TVEFLY------------------SNGNFYFLEMNTRLQVEH----PITEMVTGID---IVKEQIKIAAGEELSFKQEDI 327 (499)
T ss_pred EEEEEE------------------ECCcEEEEEEECCCCCCC----ceeehhhCCC---HHHHHHHHhcCCCCCCccccc
Confidence 999876 357899999999998653 2222457995 677778888775322221 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...+++|++|+++++|...|.|++|+++-....||....
T Consensus 328 ~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr 366 (499)
T PRK08654 328 TIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVR 366 (499)
T ss_pred ccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEE
Confidence 224799999999999998999999998877777877654
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=298.73 Aligned_cols=352 Identities=16% Similarity=0.157 Sum_probs=247.5
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-ccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-AQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (953)
+||+|+.+|.. |..+++++++.|++++.++.+.+........+ |..+.+.+. ...+.....+
T Consensus 3 ~kvLi~~~gei---------a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~a--------D~~~~i~~~~~~~y~d~~~i 65 (472)
T PRK07178 3 KKILIANRGEI---------AVRIVRACAEMGIRSVAIYSEADRHALHVKRA--------DEAYSIGADPLAGYLNPRRL 65 (472)
T ss_pred cEEEEECCcHH---------HHHHHHHHHHcCCeEEEEeCCCccCCccHhhC--------CEEEEcCCCchhhhcCHHHH
Confidence 48999987754 88999999999999999887766432211111 100000000 0001011111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCccch
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNE 233 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~~~~ 233 (953)
.+. ...++|+|+|.. |...|+..++.+++.+|+||+|+++.++.++.||..+|++|+++|||+||+.. +.+.+
T Consensus 66 ~~~a~~~~~D~I~pg~-g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~--- 141 (472)
T PRK07178 66 VNLAVETGCDALHPGY-GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLD--- 141 (472)
T ss_pred HHHHHHHCCCEEEeCC-CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHH---
Confidence 111 134799999974 78889999999999999999999999999999999999999999999999864 22221
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++.++.+ .++||+||||+.+|+|+||.+|++.+|+.+....... ...+..++||+||.|++|+++.++++
T Consensus 142 -e~~~~~~-----~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d 215 (472)
T PRK07178 142 -EALAEAE-----RIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILAD 215 (472)
T ss_pred -HHHHHHH-----HcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEE
Confidence 2222222 3789999999999999999999999997765443221 11356799999998789999999986
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
++|+ .+.+...+ ..+..++. ......|+ .+++++.++|++.|.+++++||+.|.++
T Consensus 216 ~~G~---~v~~~er~-----------------~s~~~~~~---~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~ 272 (472)
T PRK07178 216 SHGN---VVHLFERD-----------------CSIQRRNQ---KLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGT 272 (472)
T ss_pred CCCC---EEEEEccc-----------------cceEecCc---ceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 5442 22221110 11111111 12334566 6999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCC--CCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA--SYN 466 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~--~~~ 466 (953)
|||++ +++|++||+||||+++.+. +.....+|+++ ++.+++.|+....... ...
T Consensus 273 vEf~~-----------------d~~g~~y~iEiNpRl~~~~----~~te~~tGvdl---~~~~ir~a~G~~l~~~~~~~~ 328 (472)
T PRK07178 273 VEFLL-----------------DADGEVYFMEMNTRVQVEH----TITEEITGIDI---VREQIRIASGLPLSYKQEDIQ 328 (472)
T ss_pred EEEEE-----------------eCCCCEEEEEEeCCcCCCc----cceeeeeCcCH---HHHHHHHHCCCCCCCccccCC
Confidence 99987 5678899999999997653 22234679975 4566777777532221 112
Q ss_pred CcceecccccccCCCccccccCCCceEEEEecCCCcc
Q 002207 467 SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTS 503 (953)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~ 503 (953)
..+++|+.|+.++++...|.++.++++-+...+|...
T Consensus 329 ~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~v 365 (472)
T PRK07178 329 HRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGV 365 (472)
T ss_pred cceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCe
Confidence 2479999999999998889999998876666676654
|
|
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=294.21 Aligned_cols=351 Identities=17% Similarity=0.204 Sum_probs=243.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.||.. |..+++++++.||+++.++.+.+..+..... +|..+.+.+.. ..+.....
T Consensus 3 kkvli~g~G~~---------~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~--------aD~~~~~~~~~~~~~y~~~~~ 65 (447)
T PRK05586 3 KKILIANRGEI---------AVRIIRACREMGIETVAVYSEADKDALHVQL--------ADEAVCIGPASSKDSYLNIQN 65 (447)
T ss_pred ceEEEECCcHH---------HHHHHHHHHHcCCcEEEEcChHhccCcchhh--------CCEEEEeCCCChhhcccCHHH
Confidence 58999999976 8899999999999988776543332211100 11101100000 00000011
Q ss_pred HHH-hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~-~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+ ....++|+|+|.. |..+|++.++.+++.+|+||+|+++.++.+++||..+|++|+++|||+|+++ .+.+.+
T Consensus 66 i~~~~~~~~~d~i~p~~-~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~-- 142 (447)
T PRK05586 66 IISATVLTGAQAIHPGF-GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEE-- 142 (447)
T ss_pred HHHHHHHcCCCEEEcCc-cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHH--
Confidence 111 1245899999996 7889999999999999999999999999999999999999999999999984 333322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CC-CCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI-DDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~-~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++. +.++||+||||..+|+|+|+.+|++.+|+.+...+.... .+ ++.++||+||+|++|+++.+++
T Consensus 143 --e~~~~~-----~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~ 215 (447)
T PRK05586 143 --EALEIA-----KEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILG 215 (447)
T ss_pred --HHHHHH-----HHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEE
Confidence 222222 237899999999999999999999999976555432211 12 4689999999987999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+..| ..+.+ ++.. +.+...+ .......|+ .+++++.+++++.|.+++++||+.|.+
T Consensus 216 d~~G---~~~~~--~~~~---------------~~~~~~~---~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~ 272 (447)
T PRK05586 216 DNYG---NVVHL--GERD---------------CSLQRRN---QKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAG 272 (447)
T ss_pred CCCC---CEEEE--ecee---------------cceEecc---cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCccee
Confidence 5433 22221 1111 0011111 112233565 489999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCC--
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY-- 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~-- 465 (953)
+|||++ +++|++||+||||++|.+. +....++|+| +.+.+++.++.....+...
T Consensus 273 ~vEf~~-----------------~~~g~~~~iEvNpR~~~~~----~~t~~~tGid---~~~~~i~~a~G~~l~~~~~~~ 328 (447)
T PRK05586 273 TIEFLL-----------------DKDGNFYFMEMNTRIQVEH----PITEMITGVD---LVKEQIKIAYGEKLSIKQEDI 328 (447)
T ss_pred EEEEEE-----------------cCCCCEEEEEEECCCCCCc----cceehhhCCC---HHHHHHHHHcCCCCCCccccc
Confidence 999987 6788999999999998653 2233568996 4556677777653222111
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
...+++++.|+.++++...|++..+..+-.-+.++..
T Consensus 329 ~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~ 365 (447)
T PRK05586 329 KINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLG 365 (447)
T ss_pred CcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCC
Confidence 1236899999999998888888888876555455433
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=292.22 Aligned_cols=353 Identities=17% Similarity=0.168 Sum_probs=242.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.||+|+.++.+.+..+..... +|..+.+.+.. ........
T Consensus 3 kkili~g~g~~---------~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~--------aD~~~~~~~~~~~~~y~d~~~ 65 (449)
T TIGR00514 3 DKILIANRGEI---------ALRILRACKELGIKTVAVHSTADRDALHVLL--------ADEAVCIGPAPSAKSYLNIPN 65 (449)
T ss_pred ceEEEeCCCHH---------HHHHHHHHHHcCCeEEEEEChhhhccccccc--------CCEEEEcCCCCchhchhCHHH
Confidence 48999987765 8889999999999999887654422211110 11000010000 00000011
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|.. |...|++.++..++.+|+||+|+++.++.+|+||..+|++|+++|||+|+++ .+.+.+
T Consensus 66 l~~~a~~~~id~I~pg~-g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~-- 142 (449)
T TIGR00514 66 IISAAEITGADAIHPGY-GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEE-- 142 (449)
T ss_pred HHHHHHHhCCCEEEeCC-CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHH--
Confidence 1111 245899999985 6778999999999999999999999999999999999999999999999875 333322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..+.+ .++||+||||..+++|.||.++++.+|+.+....... ....+.+|||+||+|++|+++.++.
T Consensus 143 --e~~~~~~-----~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (449)
T TIGR00514 143 --ENVRIAK-----RIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLA 215 (449)
T ss_pred --HHHHHHH-----HhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEE
Confidence 2222222 3688999999999999999999999998766554321 1134679999999987999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+++|+ .+.+ ++.. ..+..++. ......|+ .+++++.++|++.|.+++++||++|++
T Consensus 216 d~~g~---~~~~--~~~~---------------~~~~~~~~---~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~ 272 (449)
T TIGR00514 216 DKYGN---AIYL--GERD---------------CSIQRRHQ---KLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAG 272 (449)
T ss_pred cCCCC---EEEE--eccc---------------cCceeccc---ceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceE
Confidence 54332 2221 1110 01111111 12223454 599999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||++ +++|.+||+||||+++.+. +....++|+++ ++.+++.++..-..+.. .
T Consensus 273 ~vef~~-----------------~~~g~~~viEiNpR~~~~~----~~~~~~tGvdl---~~~~i~~a~G~~l~~~~~~~ 328 (449)
T TIGR00514 273 TVEFLL-----------------DKNGEFYFMEMNTRIQVEH----PVTEMITGVDL---IKEQIRIAAGEPLSLKQEDV 328 (449)
T ss_pred EEEEEE-----------------eCCCCEEEEEEECCCCCCc----ceeehhcCCcH---HHHHHHHHCCCCCCCccccC
Confidence 999987 5678899999999998652 22334679975 66667777765322211 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...++++..|+.++++...|.+..++..-....++...+
T Consensus 329 ~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~ 367 (449)
T TIGR00514 329 VVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVR 367 (449)
T ss_pred CCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEe
Confidence 123689999999988877777777776554555555543
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=314.90 Aligned_cols=309 Identities=15% Similarity=0.106 Sum_probs=227.0
Q ss_pred CCcCeEEEEecC-----CCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccc
Q 002207 75 GRVLRVGLICGG-----PSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQG 149 (953)
Q Consensus 75 ~~~~kV~vl~GG-----~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (953)
..++||+||.+| ++.|+|++ +-+++++|++.||+++.++.+++-.....+ .+| ..+.+++.
T Consensus 572 ~~~kkvlilG~G~~~igq~iefd~~---~v~~~~alr~~G~~tI~v~~npetvstd~~--------~aD-~~y~~pl~-- 637 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQGIEFDYC---CCHASFALQDAGYETIMMNSNPETVSTDYD--------TSD-RLYFEPLT-- 637 (1102)
T ss_pred CCCceEEEeCccccccCccccccee---HHHHHHHHHHcCCeEEEEeCCCccccCCcc--------cCC-eEEEEeCC--
Confidence 345799999875 47899996 888999999999999988876653211000 011 01111111
Q ss_pred cCcchhHHHh-hccCcCEEEEcCCCCCCCc--hHHHHHHHc---------CCccEECCCHHHHHHhccHHHHHHHHHHCC
Q 002207 150 FGSLSEFAEH-LAANVDIVFPTIHGRFGED--GGIQEVLEK---------YNVPFVGTGSRACRQAFDKYDASLEMSKQG 217 (953)
Q Consensus 150 ~~~~~~~~~~-~~~~~D~vf~~lhG~~GEd--g~iq~lle~---------~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G 217 (953)
...+.+. ..+++|.|+|.+.|+.+-+ ..+.+.|+. .|++++|+++.++.+|+||..+|++|+++|
T Consensus 638 ---~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~G 714 (1102)
T PLN02735 638 ---VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELK 714 (1102)
T ss_pred ---HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcC
Confidence 1111111 2458999999998866533 123333332 389999999999999999999999999999
Q ss_pred CCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 218 FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 218 iptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
||+|++..+.+.+. +.++. +.++||+||||..+++|.|+.+|++.+|+.+....++....+..+|||+||+
T Consensus 715 Ip~p~~~~v~s~ee----a~~~a-----~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~ 785 (1102)
T PLN02735 715 IEQPKGGIARSEAD----ALAIA-----KRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS 785 (1102)
T ss_pred CCCCCeeEeCCHHH----HHHHH-----HhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 99999988765332 22222 2378999999999999999999999999887776655433456799999998
Q ss_pred CCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHH
Q 002207 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASL 376 (953)
Q Consensus 298 Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~ 376 (953)
|++|++|.++.+++| ..++..+.|.. ...+++.+. +...+|+ .+++++.++|++.+.+
T Consensus 786 ~g~Ei~V~vl~D~~G---~vv~~~i~e~~-----------------~~~gvhsGd-s~~~~P~~~L~~e~~~~i~~~a~k 844 (1102)
T PLN02735 786 DATEIDVDALADSEG---NVVIGGIMEHI-----------------EQAGVHSGD-SACSLPTQTIPSSCLATIRDWTTK 844 (1102)
T ss_pred CcEEEEEEEEECCCC---CEEEecceEee-----------------eccCccCCC-ccEEecCCCCCHHHHHHHHHHHHH
Confidence 669999999975433 33333333321 123444443 4455776 6999999999999999
Q ss_pred HHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 377 ~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++++||++|+++|||++ +++|++||+||||+|+ +.+|.+++++|+++.++..++
T Consensus 845 i~~~L~~~G~~~vqf~v-----------------~~dg~~yviEiNpR~s----~t~p~~~katGidl~~~~~~~ 898 (1102)
T PLN02735 845 LAKRLNVCGLMNCQYAI-----------------TPSGEVYIIEANPRAS----RTVPFVSKAIGHPLAKYASLV 898 (1102)
T ss_pred HHHHcCCcceeeEEEEE-----------------cCCCcEEEEEEeCCCC----ccHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999986 5678999999999998 568999999999876655443
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=287.67 Aligned_cols=356 Identities=16% Similarity=0.170 Sum_probs=246.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-ccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-AQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (953)
+||+|+.+|.. |..+++++++.|++++.++.+.+........+ |..+.+... ...+.....+
T Consensus 3 kkiLi~~~ge~---------a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~A--------D~~~~i~~~~~~~y~d~~~i 65 (478)
T PRK08463 3 HKILIANRGEI---------AVRVIRACRDLHIKSVAIYTEPDRECLHVKIA--------DEAYRIGTDPIKGYLDVKRI 65 (478)
T ss_pred cEEEEECCCHH---------HHHHHHHHHHcCCeEEEEECCCccCCcchhhc--------CEEEEcCCCchhcccCHHHH
Confidence 58999987765 78899999999999998886554321111101 100000000 0001111111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
.+. ...++|.|+|. .|...|+..++..|+.+|++|+|+++.++.+++||..+|++|+++|||+||+....... ..++
T Consensus 66 ~~~a~~~~iDaI~pg-~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~-~~~~ 143 (478)
T PRK08463 66 VEIAKACGADAIHPG-YGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE-SMEE 143 (478)
T ss_pred HHHHHHhCCCEEEEC-CCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC-CHHH
Confidence 111 23479999996 47778999999999999999999999999999999999999999999998865432111 1122
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh----HhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI----ILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~----~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.++.+ .++||+||||..+|+|+||.+|++.+|+....... .....++.++||+||+|++|+++.+++++.
T Consensus 144 ~~~~~~-----~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~ 218 (478)
T PRK08463 144 IKIFAR-----KIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNY 218 (478)
T ss_pred HHHHHH-----HhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCC
Confidence 333332 36899999999999999999999999876554422 111245789999999977999999997543
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
|+ .+.+... + .....++. ......|+. +++++.++|++.|.+++++||+.|++++|
T Consensus 219 g~---v~~~~er---------------~--~s~~~~~~---~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vE 275 (478)
T PRK08463 219 GN---IIHLCER---------------D--CSIQRRHQ---KVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIE 275 (478)
T ss_pred CC---EEEEecc---------------C--CccccccC---ceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEE
Confidence 32 2221110 0 01111111 133456774 99999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--CCCc
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--YNSV 468 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~~~~ 468 (953)
|++ +++|++||+||||+++.+. +.....+|+| +++..|+.|+..-..+.. ....
T Consensus 276 f~~-----------------~~~~~~y~iEiN~R~~~~~----~~te~~tGid---lv~~~ir~a~G~~l~~~~~~~~~~ 331 (478)
T PRK08463 276 FLL-----------------DDYNRFYFMEMNTRIQVEH----GVTEEITGID---LIVRQIRIAAGEILDLEQSDIKPR 331 (478)
T ss_pred EEE-----------------cCCCCEEEEEEECCcCCCc----ceeeHhhCCC---HHHHHHHHHcCCCCCCccccCCCc
Confidence 987 5678899999999998763 2233468996 566677777775322211 1224
Q ss_pred ceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 469 SSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
++++++|+.++++...|.++.++++-....+|...+
T Consensus 332 g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr 367 (478)
T PRK08463 332 GFAIEARITAENVWKNFIPSPGKITEYYPALGPSVR 367 (478)
T ss_pred eEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCee
Confidence 799999999999988899999987766555554443
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=286.15 Aligned_cols=353 Identities=16% Similarity=0.173 Sum_probs=240.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.||+++.++-+.+........+ |..+.+.+. ...+.....
T Consensus 6 ~~vLi~~~gei---------a~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~a--------D~~~~i~p~~~~~~y~d~~~ 68 (467)
T PRK12833 6 RKVLVANRGEI---------AVRIIRAARELGMRTVAACSDADRDSLAARMA--------DEAVHIGPSHAAKSYLNPAA 68 (467)
T ss_pred cEEEEECCcHH---------HHHHHHHHHHcCCeEEEEECCCCCCChhHHhC--------CEEEecCCCCccccccCHHH
Confidence 37778877654 78899999999999987764433221110000 000000000 000001111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|. .|...|+..++..|+..|++|+|+++.++.++.||..+|++|+++|||+||+. .+.+.+
T Consensus 69 i~~~a~~~~~daI~pg-~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~-- 145 (467)
T PRK12833 69 ILAAARQCGADAIHPG-YGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLD-- 145 (467)
T ss_pred HHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHH--
Confidence 1111 13479999996 46778999889999999999999999999999999999999999999999986 444322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++.+ .++||+||||..+|+|.||.+|++.+|+.+....... ...++.++||+||+|++|+++.+++
T Consensus 146 --e~~~~~~-----~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~ 218 (467)
T PRK12833 146 --AALEVAA-----RIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILG 218 (467)
T ss_pred --HHHHHHH-----HhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEe
Confidence 2333332 3689999999999999999999999997765433211 1125679999999866999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++. ..+.+...+ ..+..++. ......|+ .+++++.++|++.|.+++++||++|.+
T Consensus 219 dg~----~~~~~~~~~-----------------~~~~r~~~---ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~ 274 (467)
T PRK12833 219 DGE----RVVHLFERE-----------------CSLQRRRQ---KILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAG 274 (467)
T ss_pred CCC----cEEEEEEee-----------------cccccCCc---cEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcc
Confidence 432 122222111 01111111 12333554 589999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||+++ +++|++||+||||+++.+. +.....+|+|+ +..+++.|+.....+.. .
T Consensus 275 ~vEf~~~----------------~~~g~~~~iEvNpR~~~~~----~~te~~tGvdl---~~~~i~~a~G~~l~~~~~~~ 331 (467)
T PRK12833 275 TLEYLFD----------------DARGEFYFIEMNTRIQVEH----PVTEAITGIDL---VQEMLRIADGEPLRFAQGDI 331 (467)
T ss_pred eEEEEEe----------------cCCCCEEEEEEECCCCcch----hhhHHHhCCCH---HHHHHHHHCCCCCCCCcccc
Confidence 9999872 2468899999999998552 33344689975 44567777765332221 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...++++++|+.++++...|.++.++++-....+|...+
T Consensus 332 ~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr 370 (467)
T PRK12833 332 ALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVR 370 (467)
T ss_pred CcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeE
Confidence 234699999999999888888888887665555655443
|
|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=274.15 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=174.7
Q ss_pred CCcEEEEecCC---CCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 634 NQATVFIAVHG---GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 634 ~~dvvf~~~hG---~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
.+|+||+.+|+ .+|+++ +.+||.+| +|+++++.++++|+||..++++ |+++|||||++..+.+.+
T Consensus 57 ~~d~v~~~~~~~~~~~~~~~--~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~---l~~~gip~P~t~~~~~~~------ 124 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTAA--LRQFEMLG-SYPLNESVAIARARDKLRSMQL---LARQGIDLPVTGIAHSPD------ 124 (300)
T ss_pred CCCEEEEcCCCchhhHHHHH--HHHHHHCC-CceecCHHHHHhhhcHHHHHHH---HHHcCCCCCCEEEeCCHH------
Confidence 47999999998 455654 77999999 7899999999999999999999 999999999998775322
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.++.+.+++||+||||.++++|.||+++++.+++..+ ++....+ +..+|||+||
T Consensus 125 --~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~---~~~~~~~-------------------~~~~lvQe~I 180 (300)
T PRK10446 125 --DTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESV---IDAFRGL-------------------NAHILVQEYI 180 (300)
T ss_pred --HHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHH---HHHHHhc-------------------CCCEEEEeee
Confidence 123334445359999999999999999999998887753 3332222 4679999999
Q ss_pred c---CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCC
Q 002207 791 E---TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 791 ~---G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
+ |. |++|.++++. ..+.++.....+ +|.++|..|.... |.+
T Consensus 181 ~~~~g~-------------------------d~rv~vig~~-----~~~~~~r~~~~~--~~~~n~~~g~~~~--~~~-- 224 (300)
T PRK10446 181 KEAQGC-------------------------DIRCLVVGDE-----VVAAIERRAKEG--DFRSNLHRGGAAS--VAS-- 224 (300)
T ss_pred ccCCCc-------------------------eEEEEEECCE-----EEEEEEEecCCC--chhheeccCCeec--cCC--
Confidence 5 44 9999999753 233444433332 6778887665432 333
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHH
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~ 947 (953)
++ ++++++|.+++++|||. ++||||+++. +| +||+|||++|||+.. ..+.|..++..+++.+.+.
T Consensus 225 -l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~-~g-~~vlEvN~~pg~~~~-------~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 225 -IT----PQEREIAIKAARTMALD-VAGVDILRAN-RG-PLVMEVNASPGLEGI-------EKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred -CC----HHHHHHHHHHHHHhCCC-EEEEEEEEcC-CC-cEEEEEECCCChhhh-------HHHHCcCHHHHHHHHHHHh
Confidence 33 45789999999999997 9999999984 56 899999999999853 2233456666677777777
Q ss_pred Hhhcc
Q 002207 948 GSERF 952 (953)
Q Consensus 948 a~~r~ 952 (953)
+..||
T Consensus 290 ~~~~~ 294 (300)
T PRK10446 290 ATTEY 294 (300)
T ss_pred ccccc
Confidence 77775
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=284.04 Aligned_cols=345 Identities=17% Similarity=0.174 Sum_probs=236.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.||.. |..+++++++.||+|+.++.+.+........ +|..+.+.+.. ........
T Consensus 3 k~iLi~g~g~~---------a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~--------ad~~~~~~~~~~~~~y~d~~~ 65 (451)
T PRK08591 3 DKILIANRGEI---------ALRIIRACKELGIKTVAVHSTADRDALHVQL--------ADEAVCIGPAPSKKSYLNIPA 65 (451)
T ss_pred ceEEEECCCHH---------HHHHHHHHHHcCCeEEEEcChhhccCCCHhH--------CCEEEEeCCCCcccccCCHHH
Confidence 58999987765 7889999999999999887665432111000 01000000000 00000011
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|.. |...|++.++..|+.+|+||+|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 66 l~~~a~~~~id~I~p~~-~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~-- 142 (451)
T PRK08591 66 IISAAEITGADAIHPGY-GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEE-- 142 (451)
T ss_pred HHHHHHHhCCCEEEECC-CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHH--
Confidence 1111 234799999976 5677888899999999999999999999999999999999999999999874 343322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++.+ .++||+||||..+++|.||.+|++.+|+.+........ ..++.++||+||+|++|+++.+++
T Consensus 143 --~~~~~~~-----~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (451)
T PRK08591 143 --EALAIAK-----EIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLA 215 (451)
T ss_pred --HHHHHHH-----HcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 2333332 36889999999999999999999999987666543221 124679999999987899999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++.|+ .+.+ ++.. ..+...+. ......|+ .+++++.++|++.|.+++++||+.|.+
T Consensus 216 d~~g~---~~~~--~~~~---------------~~~~~~~~---~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~ 272 (451)
T PRK08591 216 DGHGN---AIHL--GERD---------------CSLQRRHQ---KVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAG 272 (451)
T ss_pred cCCCC---EEEE--eccc---------------ccceecce---eEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceE
Confidence 54332 2221 1100 01111111 11223455 589999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
++||++ +++|++||+|||++++.+. +.....+|+++ +..+++.|+........ .
T Consensus 273 ~vEf~~-----------------~~~g~~~viEINpR~~~~~----~~~~~~~Gvdl---~~~~i~~a~G~~l~~~~~~~ 328 (451)
T PRK08591 273 TIEFLY-----------------EKNGEFYFIEMNTRIQVEH----PVTEMITGVDL---VKEQIRIAAGEPLSIKQEDI 328 (451)
T ss_pred EEEEEE-----------------cCCCCEEEEEEECCCCccc----hhhhhhhCCCH---HHHHHHHHCCCCCCCccccc
Confidence 999986 5678899999999997542 33345689975 55667777765322211 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEE
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFV 496 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 496 (953)
...++++..|+.++++...|.+..+..+-.-
T Consensus 329 ~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~ 359 (451)
T PRK08591 329 VFRGHAIECRINAEDPAKNFMPSPGKITRYH 359 (451)
T ss_pred CcCceEEEEEEeeecCccCcccCCCEeeEEE
Confidence 1236889999998888777777777655443
|
|
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=280.17 Aligned_cols=342 Identities=16% Similarity=0.155 Sum_probs=231.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.+|.. +..+++++++.||+|+.++-+.|........+ |..+.+.+.. ..+.....
T Consensus 5 k~ili~~~g~~---------~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~a--------d~~~~~~~~~~~~~y~~~~~ 67 (445)
T PRK08462 5 KRILIANRGEI---------ALRAIRTIQEMGKEAIAIYSTADKDALYLKYA--------DAKICIGGAKSSESYLNIPA 67 (445)
T ss_pred CEEEEECCcHH---------HHHHHHHHHHcCCCEEEEechhhcCCchhhhC--------CEEEEeCCCchhcccCCHHH
Confidence 58999997755 77899999999999998876655432211111 1111110000 00100111
Q ss_pred HHH-hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~-~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+ ....++|+|+|.. |..+|+..++++++.+|+||+|+++.++.+|+||..+|++|+++|||+|++. .+.+.+
T Consensus 68 l~~~~~~~~~D~i~pg~-g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~-- 144 (445)
T PRK08462 68 IISAAEIFEADAIFPGY-GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYE-- 144 (445)
T ss_pred HHHHHHHcCCCEEEECC-CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHH--
Confidence 111 1245899999997 6779999999999999999999999999999999999999999999999975 233222
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh----HhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI----ILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~----~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..+.+ .++||+||||..+++|.||.+|++.+|+.+..... .....++.++||+||+|++|+++.+++
T Consensus 145 --~~~~~~~-----~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 217 (445)
T PRK08462 145 --EAKKIAK-----EIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILG 217 (445)
T ss_pred --HHHHHHH-----HcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEE
Confidence 2222222 36899999999999999999999999977554322 111134579999999977999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+.+| ..+.+ ++.. ..+.....++ ....|+ .++++..++|++.|.+++++||+.|.+
T Consensus 218 ~~~g---~~~~~--g~~~------------~~~~~~~~~~------~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~ 274 (445)
T PRK08462 218 DKHG---NVIHV--GERD------------CSLQRRHQKL------IEESPAVVLDEKTRERLHETAIKAAKAIGYEGAG 274 (445)
T ss_pred CCCC---CEEEE--Eecc------------ccceecccce------EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 5433 22221 1111 0011111122 223566 489999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC-CCCCCCC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF-PNLASYN 466 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~-~~~~~~~ 466 (953)
++||++ +++|++||+||||+++.+. +....++|+++.++ +++.++... +......
T Consensus 275 ~ve~~~-----------------~~~g~~~viEiNpR~~~~~----~~~~~~~Gidl~~~---~i~~a~G~~l~~~~~~~ 330 (445)
T PRK08462 275 TFEFLL-----------------DSNLDFYFMEMNTRLQVEH----TVSEMVSGLDLIEW---MIKIAEGEELPSQESIK 330 (445)
T ss_pred eEEEEE-----------------eCCCCEEEEEEECCcCcCc----ceehhhhCCCHHHH---HHHHHCCCCcccccccC
Confidence 999986 5667899999999997542 12234579976544 555666542 1111112
Q ss_pred CcceecccccccCCCccccccCCCceEE
Q 002207 467 SVSSHLPGRSSGSKPTEALNKREGIREV 494 (953)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v 494 (953)
..++++.+|+...++. .|.+..+++.-
T Consensus 331 ~~~~a~~~~~~~~~~~-~~~p~~G~l~~ 357 (445)
T PRK08462 331 LKGHAIECRITAEDPK-KFYPSPGKITK 357 (445)
T ss_pred CceeEEEEEeccCCCC-ceecccCEEeE
Confidence 2357888899887764 35566666543
|
|
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=276.91 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=166.8
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccc
Q 002207 626 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDL 705 (953)
Q Consensus 626 ~~~~~~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~ 705 (953)
++++.....+-++|+. |||++|++||.+||||+||++.++++||||..+|++ ++++|||||++..+...+.
T Consensus 98 ~~~~~~~~~~~~~fl~------~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l---~~~aGIPtpp~~~~~~~~~ 168 (493)
T PRK06524 98 EFIKRRGPGGKACFVM------FDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRL---ANEAGVPSVPHVLGRVDSY 168 (493)
T ss_pred HHHHhhCCCCceEEec------CCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHH---HHHcCCCCCCcccccCCCH
Confidence 3443333345577776 499999999999999999999999999999999999 8999999999987643221
Q ss_pred cCCchhhHHHHHHhh--cCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 706 LKTPIVDIWHELTSK--LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 706 ~~~~~~~~~~~~~~~--lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
.+ +.+..+. + +||+||||+.+|||+|+++|++.+||+. +++.++. .+.
T Consensus 169 -----ee-l~~~~~~~~I-GyPvVVKP~~GGSS~GV~~Vkn~eELe~---a~~~~~~--------------------~~~ 218 (493)
T PRK06524 169 -----DE-LSALAHGAGL-GDDLVVQTPYGDSGSTTFFVRGQRDWDK---YAGGIVG--------------------QPE 218 (493)
T ss_pred -----HH-HHHHHHhccC-CCcEEEEECCCCCCcCEEEeCCHHHHHH---HHHHhcC--------------------CCC
Confidence 12 2223333 8 6999999999999999999999999886 4554432 256
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCc-eeEc
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG-INLT 862 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~-~~~~ 862 (953)
++||+||.|+ |++|.++.+....+..++..++.....+.. |.++.. ..++
T Consensus 219 viVEe~I~Gr-------------------------EitVev~vd~dG~Vv~~~~~e~vg~~Ei~~----yr~G~~~~~i~ 269 (493)
T PRK06524 219 IKVMKRIRNV-------------------------EVCIEACVTRHGTVIGPAMTSLVGYPELTP----YRGGWCGNDIW 269 (493)
T ss_pred EEEEeccCcE-------------------------EEEEEEEEeCCCCEEeccccccccceEEEE----ccCCeEEEEEc
Confidence 9999999997 888877754332221111111111112222 333322 3467
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHc---CCcceEEEEEEEEcCCCcEEEEeeCCCCCC-CCCc
Q 002207 863 PPPASIMSTEALDKCKQRIELIANAL---QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPST 922 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aL---g~~G~ariDf~v~~~~g~~~viEINt~PGl-t~~S 922 (953)
|+. +++++.++++++|++++++| ||.|++|||||++.++|++||+||||+|+- ++.+
T Consensus 270 PA~---L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~tpmt 330 (493)
T PRK06524 270 PGA---LPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPRLSGASPMT 330 (493)
T ss_pred cCC---CCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCCcccccccc
Confidence 876 68999999999999999998 899999999999854589999999999987 4544
|
|
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=276.79 Aligned_cols=239 Identities=15% Similarity=0.034 Sum_probs=173.8
Q ss_pred CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhh
Q 002207 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~ 242 (953)
.+-++|... ||++|++||.+||||+|+++.++++||||..+|++++++|||||++..+...+. .++....+.
T Consensus 106 ~~~~~fl~~------DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~--eel~~~~~~ 177 (493)
T PRK06524 106 GGKACFVMF------DEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSY--DELSALAHG 177 (493)
T ss_pred CCceEEecC------CHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCH--HHHHHHHHh
Confidence 355666654 999999999999999999999999999999999999999999999987532221 112222111
Q ss_pred cCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecc
Q 002207 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322 (953)
Q Consensus 243 ~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~ 322 (953)
..++|||||||+.+|||+|+++|++.+|+.+.+.+++. ++.++||+||.| +|++|.++.+.+|. .+...+
T Consensus 178 ---~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe~I~G-rEitVev~vd~dG~---Vv~~~~ 247 (493)
T PRK06524 178 ---AGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMKRIRN-VEVCIEACVTRHGT---VIGPAM 247 (493)
T ss_pred ---ccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEeccCc-EEEEEEEEEeCCCC---EEeccc
Confidence 12689999999999999999999999998877665432 367999999997 99999988654332 111111
Q ss_pred eEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh---CCCCeeEeeeeecCCCCc
Q 002207 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL---GLCDFARIDGWFLPSSTH 399 (953)
Q Consensus 323 ~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL---g~~G~arVDf~~~~~~~~ 399 (953)
.++. + ..++.. |..+....+.+|+.+++++.++++++|.+++++| ||+|++||||++
T Consensus 248 ~e~v--g--------~~Ei~~----yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfv------ 307 (493)
T PRK06524 248 TSLV--G--------YPELTP----YRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLH------ 307 (493)
T ss_pred cccc--c--------ceEEEE----ccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEE------
Confidence 1110 0 001222 3322212457899999999999999999999998 899999999987
Q ss_pred cccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 400 VFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 400 ~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++ +|++||+||||+|+-+ +.+-.++..+|.+++..+-.+.
T Consensus 308 -----------d~ddgevYfnEINPR~~G~--tpmt~~~s~Agad~p~fllh~~ 348 (493)
T PRK06524 308 -----------DLDADELYLGEVNPRLSGA--SPMTNLTTEAYADMPLFLFHLL 348 (493)
T ss_pred -----------ECCCCeEEEEEEeCCcccc--cccchhhhccCCChhHHHHHHH
Confidence 43 5889999999999852 1122233345676666654443
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=283.81 Aligned_cols=294 Identities=17% Similarity=0.113 Sum_probs=211.1
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+||.|| ++|+.++.++++.||+|+.++.+++...... .|..+ .. .+... +.
T Consensus 22 ~k~IgIIGgG---------qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~----------AD~~~-v~----~~~D~-~~ 76 (577)
T PLN02948 22 ETVVGVLGGG---------QLGRMLCQAASQMGIKVKVLDPLEDCPASSV----------AARHV-VG----SFDDR-AA 76 (577)
T ss_pred CCEEEEECCC---------HHHHHHHHHHHHCCCEEEEEeCCCCCchhhh----------Cceee-eC----CCCCH-HH
Confidence 3689999999 4589999999999999998876654211110 00000 00 00000 11
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
...+..++|++....+... ......|+..|+| +++++.+..+|+||+.+|++|+++|||||+|..+.+.+ ++
T Consensus 77 l~~~a~~~dvIt~e~e~v~---~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~----el 148 (577)
T PLN02948 77 VREFAKRCDVLTVEIEHVD---VDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLE----SA 148 (577)
T ss_pred HHHHHHHCCEEEEecCCCC---HHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHH----HH
Confidence 1222335899877665432 2233788999998 57899999999999999999999999999999886543 23
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
.+..+ .++||+||||+++| +|.|+.++++.+|+.+....++ .++..+|||+||+|.+|++|.++++.+|
T Consensus 149 ~~~~~-----~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~--~~~~~vlvEefI~~~~EisV~v~r~~~G--- 218 (577)
T PLN02948 149 EKAGD-----LFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALG--GFERGLYAEKWAPFVKELAVMVARSRDG--- 218 (577)
T ss_pred HHHHH-----hcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhh--CCCCcEEEEecCCCCeEEEEEEEECCCC---
Confidence 23222 37899999999988 5999999999999876665543 3677899999999779999999975332
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
.....+..|... .+.++ .....|+.+++++.++++++|.+++++||++|++|||||+
T Consensus 219 ~i~~~p~~E~~~----------~~~~~-----------~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv-- 275 (577)
T PLN02948 219 STRCYPVVETIH----------KDNIC-----------HVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFL-- 275 (577)
T ss_pred CEEEecCcccEE----------ECCee-----------EEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE--
Confidence 233333333211 11111 1235799999999999999999999999999999999987
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+||||+||.+.+.. . .++|+| +++..|+.++..
T Consensus 276 ---------------~~dG~v~v~EInpRpg~sGh~t-~---ea~~~s---~fe~~vRa~lGl 316 (577)
T PLN02948 276 ---------------LKDGQILLNEVAPRPHNSGHYT-I---EACYTS---QFEQHLRAVLGL 316 (577)
T ss_pred ---------------cCCCcEEEEEEeCCCCCCCcee-e---ecccCC---HHHHHHHHHcCC
Confidence 6788999999999999876532 1 466775 466667776665
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=296.84 Aligned_cols=342 Identities=19% Similarity=0.181 Sum_probs=241.4
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-----ccccCcchhHHHh-hccCcCEEEEcC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-----AQGFGSLSEFAEH-LAANVDIVFPTI 171 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~D~vf~~l 171 (953)
|..|++++++.|++++.++.+.+-....... +|..+.+... .........+... ...++|+|+|.
T Consensus 11 a~ri~ra~~elGi~tVav~s~~D~~s~~~~~--------ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PG- 81 (1143)
T TIGR01235 11 AIRVFRAANELGIRTVAIYSEEDKLSLHRQK--------ADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPG- 81 (1143)
T ss_pred HHHHHHHHHHcCCEEEEEECcccccCcchhh--------cCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEEC-
Confidence 7779999999999999998765532111100 1111111000 0000011111111 23479999997
Q ss_pred CCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCccchhhhhhhhhhcCCCCCC
Q 002207 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNS 249 (953)
Q Consensus 172 hG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 249 (953)
+|...|+..++..|+..|++|+|+++.++.++.||..++++++++|||+||+.. +.+. +++.++.+ .++
T Consensus 82 yGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~----eea~~~ae-----~iG 152 (1143)
T TIGR01235 82 YGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETM----EEVLDFAA-----AIG 152 (1143)
T ss_pred CCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCH----HHHHHHHH-----HcC
Confidence 577889999999999999999999999999999999999999999999999753 2222 22333332 368
Q ss_pred CcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEE
Q 002207 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV 325 (953)
Q Consensus 250 ~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei 325 (953)
||+||||+.+|+|+|+.+|++.+|+.+.......+ -.++.++||+||+|++|++|.+++++.|+ .+.+.. .
T Consensus 153 yPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~---vv~l~e--R 227 (1143)
T TIGR01235 153 YPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGN---VVHLFE--R 227 (1143)
T ss_pred CCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCC---EEEEEe--c
Confidence 99999999999999999999999876655443211 12568999999998899999999865443 222111 0
Q ss_pred EEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcccccc
Q 002207 326 ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSS 404 (953)
Q Consensus 326 ~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~ 404 (953)
+ +.....+. ......|+ .+++++.++|++.|.+++++||++|.++|||++
T Consensus 228 -------------d--csvqrr~q---k~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlv----------- 278 (1143)
T TIGR01235 228 -------------D--CSVQRRHQ---KVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLV----------- 278 (1143)
T ss_pred -------------c--ccccccCc---eEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE-----------
Confidence 0 01111111 13345676 599999999999999999999999999999986
Q ss_pred ccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCC---CCCCC-----Ccceeccccc
Q 002207 405 ETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN---LASYN-----SVSSHLPGRS 476 (953)
Q Consensus 405 ~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~---~~~~~-----~~~~~~~~~~ 476 (953)
+++|++||+||||+++.+. +.....+|++ +++.+|+.|....-. +..+. -.+++|++|+
T Consensus 279 ------d~dg~~yfIEVNPRiqveh----~vTe~vtGiD---lv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri 345 (1143)
T TIGR01235 279 ------DNDGKFYFIEVNPRIQVEH----TVTEEITGID---IVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRV 345 (1143)
T ss_pred ------eCCCcEEEEEeecCCCcch----hHHHHHhCcH---HHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEE
Confidence 5678899999999998653 2233467985 566777777654211 11111 2479999999
Q ss_pred ccCCCccccccCCCceEEEEecCCCccc
Q 002207 477 SGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 477 ~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
.+++|...|+|.+|++..+...||.+..
T Consensus 346 ~~edp~~~f~p~~g~i~~~~~~~g~gvr 373 (1143)
T TIGR01235 346 TTEDPANNFQPDTGRIEAYRSAGGFGIR 373 (1143)
T ss_pred eeecCCCCcccCCcEeeEEecCCCCCeE
Confidence 9999999999999999998888887654
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=266.37 Aligned_cols=366 Identities=18% Similarity=0.183 Sum_probs=265.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|.-.|- .|-.+.+++++.|++.+.++-+.+-..++..- +|-...+.+ .......+..
T Consensus 3 ~kiLIanrGe---------ia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~--------adeav~i~~~~~~~syl~i~~ 65 (449)
T COG0439 3 KKILIANRGE---------IAVRIIRACRELGIETVAVYSEADADALHVAL--------ADEAVCIGPAPSADSYLNIDA 65 (449)
T ss_pred ceEEEecCch---------hHHHHHHHHHHhCCeEEEEeccccccchhhhh--------CceEEEcCCccchhhhhhHHH
Confidence 5788887554 38889999999999998887555533322111 111111110 0000000111
Q ss_pred H-HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 156 F-AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 156 ~-~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
. ........|.|+|... ..-||..++++++..|+-|+|+++.+++.+.||..++++++++|+|++|+.-- .-...+
T Consensus 66 ii~~a~~~gadai~pGyg-flsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~--~~~~~e 142 (449)
T COG0439 66 IIAAAEETGADAIHPGYG-FLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDG--AVADNE 142 (449)
T ss_pred HHHHHHhcCCceEcccch-hhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCC--CcCCHH
Confidence 1 1112347899999885 77799999999999999999999999999999999999999999999998721 111122
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
++.++.+ .++|||||||+.||+|+||++|++.+|+.+.......+. .++.+++|+||++.+.+.+.|++|+
T Consensus 143 e~~~~a~-----~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~ 217 (449)
T COG0439 143 EALAIAE-----EIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDG 217 (449)
T ss_pred HHHHHHH-----HcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcC
Confidence 3444443 367999999999999999999999999876665543321 2566999999999789999999876
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
.++. + ..+|. + . +-+...++..+..|+. ++++.++++-+.|.++.+.+|.+|.+.+
T Consensus 218 ~g~~---i--~l~eR-------------d--c---siqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtv 274 (449)
T COG0439 218 HGNV---I--HLGER-------------D--C---SIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTV 274 (449)
T ss_pred cccE---E--EEEec-------------c--C---CCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 6542 1 11111 1 0 1112233456677886 8899999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCC--CC
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY--NS 467 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~--~~ 467 (953)
+|++ +.+|++||+|+||+-+.... ..-..+|+ +|++.+|+.|+...-+++.. ..
T Consensus 275 Efl~-----------------~~~~~~yfiEmN~Rlqveh~----vte~vtGi---Dlv~~qi~ia~ge~l~~~q~~~~~ 330 (449)
T COG0439 275 EFLY-----------------DSNGEFYFIEMNTRLQVEHP----VTEMVTGI---DLVKEQIRIAAGEPLSLKQEDIKF 330 (449)
T ss_pred EEEE-----------------eCCCCEEEEEEecccccCcc----ceehhhhh---hHHHHHHHHHcCCCCCCCCCcccc
Confidence 9986 44688999999998876543 23346788 67888899988854444431 11
Q ss_pred cceecccccccCCCccccccCCCceEEEEecCCCcccceeccccHHHH
Q 002207 468 VSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 515 (953)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v 515 (953)
.+|++++|+..+++..+|.+++++++-....||.....+..+.++..|
T Consensus 331 ~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i 378 (449)
T COG0439 331 RGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRV 378 (449)
T ss_pred cceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCccc
Confidence 369999999999998889999999999999999998877777766654
|
|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=270.24 Aligned_cols=243 Identities=16% Similarity=0.155 Sum_probs=181.3
Q ss_pred cCcCEEEEcCCCCCCCchHHH---HHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQ---EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq---~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++ .+|++.++ ..|+.+|+|+.|++..++.+++||..+|++|+++|||||++..+.+.+. +.+
T Consensus 67 ~~iD~Vv~-----g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~e----a~~ 137 (426)
T PRK13789 67 NPFDLIVV-----GPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSS----SLS 137 (426)
T ss_pred cCCCEEEE-----CCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHH----HHH
Confidence 47999997 34787665 4566699999999999999999999999999999999999988865432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++ .++||+||||..+++|+||.+|++.+|+.+.+.+++... .+..+||||||+| +|+++.++.++
T Consensus 138 ~~~-----~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg---- 207 (426)
T PRK13789 138 YLE-----SEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDG---- 207 (426)
T ss_pred HHH-----hcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEECC----
Confidence 332 367899999999999999999999999887777665311 1348999999998 99999999632
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHH-HHHHHH---HHhC--CCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIRE-GASLLF---QRLG--LCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~-~a~~~~---~aLg--~~G~a 387 (953)
....++++.+- ...+||++.++..++ +...+|++ +++++.+++++ ++.++. +++| ++|+.
T Consensus 208 ~~~~~lp~~~d------------~k~~~d~d~g~~tgg-mg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl 274 (426)
T PRK13789 208 DSYFLLPAAQD------------HKRAFDGDQGPNTGG-MGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLL 274 (426)
T ss_pred CEEEEccceEe------------cccccCCCCCCCCCC-ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 12333443321 356889998887665 56668886 68888888864 444444 5556 78999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
++||++ +++|++||+|+|++||.+.+..+.. ..+. +|++.++..+..+.
T Consensus 275 ~~e~~i-----------------t~~g~~~vlE~n~R~Gdpe~~~ll~---~l~~---dl~~~~~~~~~g~l 323 (426)
T PRK13789 275 YAGLMI-----------------SPEGEPKVVEFNCRFGDPETQCVLA---MLDG---DLLELLYAASTGKI 323 (426)
T ss_pred EEEEEE-----------------cCCCCEEEEEEecCCCCcHhhhhhc---cCCC---CHHHHHHHHHcCCC
Confidence 999986 6788899999999999877543321 1233 55665566555543
|
|
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=256.59 Aligned_cols=302 Identities=18% Similarity=0.160 Sum_probs=219.0
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
+.|+|+..++| +. ||.+++++|+++||.|+.+.- + |+.++.+..-....++++....+. ..
T Consensus 4 g~i~Igqa~ef-----dy---sG~qac~aLkeeg~~vvlvns--n-------pAti~td~e~AD~~y~eP~~~E~v--~~ 64 (400)
T COG0458 4 GPIVIGQAAEF-----DY---SGTQACKALKEEGYGVVLVNS--N-------PATIMTDPELADKVYIEPITKEPV--EK 64 (400)
T ss_pred CceeeEeeeee-----ch---hHHHHHHHHHhcCCeEEEEcC--C-------CccccCCchhcceeeeecCcHHHH--HH
Confidence 45778766654 44 399999999999999987653 2 223332221122334444332110 11
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~ 231 (953)
++ .++++|.++|.+.|+.+++-.+ .+.|+.+||+.+|++..+..+|.||+++|++|+++|+|+| +......+.
T Consensus 65 Ii--~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e 141 (400)
T COG0458 65 II--EKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEE 141 (400)
T ss_pred HH--HhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHH
Confidence 11 2568999999999999988543 4689999999999999999999999999999999999999 443333222
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
. .+.. +..+|||||||+.+-+|.|..+++|.+|+.+.+...+...+..++|+|++|.||+|++..|+.+..
T Consensus 142 ~----~~~~-----~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~ 212 (400)
T COG0458 142 A----DEIA-----DEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGK 212 (400)
T ss_pred H----hhhH-----hhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCC
Confidence 1 1111 247899999999999999999999999998888877665666799999999999999999999865
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
+| +++.+. .+.+|-..-+. + .+....|++ +++..++.++..+.++.+.||..|-++||
T Consensus 213 ~n---~ivvc~----------------men~dp~gvht-g-dsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ 271 (400)
T COG0458 213 DN---CIVVCN----------------MENLDPMGVHT-G-DSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQ 271 (400)
T ss_pred CC---EEEEEe----------------CCccccccccc-c-ceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 54 333222 12233333332 2 256678887 78889999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHH
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
|.+++ ..|++||+||||+++ .+|-+ ..+++|+....+..
T Consensus 272 ~av~~----------------~~~~~~viEvNpRvS--rssaL--askAtgypia~vaa 310 (400)
T COG0458 272 FAVDP----------------GGGELYVIEINPRVS--RSSAL--ASKATGYPIAKVAA 310 (400)
T ss_pred EEEcC----------------CCceEEEEEecCCcC--cchhh--hhhccCChHHHHHH
Confidence 98732 346999999998665 55543 34567765544433
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=289.53 Aligned_cols=354 Identities=17% Similarity=0.163 Sum_probs=247.0
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc---cccCcc
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA---QGFGSL 153 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 153 (953)
.+||+|+-.|.. |..+++++++.|++++.++.+.+........ +|..+.+.... ..+...
T Consensus 5 ~kkvLianrGei---------avri~raa~elGi~~Vav~s~~D~~a~~~~~--------ADe~~~i~~~~~~~~~Yldi 67 (1146)
T PRK12999 5 IKKVLVANRGEI---------AIRIFRAATELGIRTVAIYSEEDKLSLHRFK--------ADEAYLIGEGKHPVRAYLDI 67 (1146)
T ss_pred ccEEEEECCcHH---------HHHHHHHHHHcCCEEEEEECCCCcCCchHHh--------CCEEEEcCCCCCcccCccCH
Confidence 357888887754 7789999999999999887765532111100 11011110000 000011
Q ss_pred hhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCc
Q 002207 154 SEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSE 230 (953)
Q Consensus 154 ~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~ 230 (953)
..+.+. ...++|.|+|.. |...|+..++..++.+|++|+|+++.++.++.||..++++++++|||+||+.. +.+.+
T Consensus 68 d~Ii~iAk~~~iDaI~Pgy-GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~e 146 (1146)
T PRK12999 68 DEIIRVAKQAGVDAIHPGY-GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIE 146 (1146)
T ss_pred HHHHHHHHHhCCCEEEeCC-CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHH
Confidence 111111 234799999964 66778888899999999999999999999999999999999999999988764 33322
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEE
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~V 306 (953)
++.++.+ .++||+||||+.+|+|.|+.+|++.+|+.+.......+ . .++.++||+||+|.+|+++.+
T Consensus 147 ----ea~~~a~-----~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqv 217 (1146)
T PRK12999 147 ----EALEFAE-----EIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQI 217 (1146)
T ss_pred ----HHHHHHH-----HhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEE
Confidence 2333332 37899999999999999999999999876655443221 1 256899999999878999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCC
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCD 385 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G 385 (953)
++++.|+ .+.+... .......+ .......|+ .+++++.++|++.|.++++++|++|
T Consensus 218 l~D~~G~---vv~l~er-----------------dcsvqrr~---qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G 274 (1146)
T PRK12999 218 LGDKHGN---VVHLYER-----------------DCSVQRRH---QKVVEIAPAPGLSEELRERICEAAVKLARAVGYVN 274 (1146)
T ss_pred EEECCCC---EEEEEcc-----------------ccceeecC---ccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9865443 2221110 00111111 112334666 5899999999999999999999999
Q ss_pred eeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCC---
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL--- 462 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~--- 462 (953)
.+++||++ +++|++||+||||+++.+. +.....+|++ ++..+|+.|+..-...
T Consensus 275 ~gtVEflv-----------------d~dg~~yfIEINpRlqveh----~vte~~tGvD---lv~~~iriA~G~~l~~~~~ 330 (1146)
T PRK12999 275 AGTVEFLV-----------------DADGNFYFIEVNPRIQVEH----TVTEEVTGID---IVQSQILIAEGATLHDLEI 330 (1146)
T ss_pred eEEEEEEE-----------------ECCCCEEEEEEECCCCCcc----hHHHHHhCcC---HHHHHHHHHCCCCCCcccc
Confidence 99999987 5677899999999998542 2233467996 5677777777653221
Q ss_pred --CCC---CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 463 --ASY---NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 463 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
+.. ...+++|+||+.+++|...|.+..+++.-.-..||...+
T Consensus 331 ~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr 377 (1146)
T PRK12999 331 GIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVR 377 (1146)
T ss_pred ccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEE
Confidence 111 123699999999999999999999998877667776544
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=294.11 Aligned_cols=306 Identities=16% Similarity=0.132 Sum_probs=221.7
Q ss_pred CcCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||++|+ +.|+|+| +.+++++|++.||+|+.++.+++.. +..- ...| .++.++.. .
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~---~v~~i~alk~~G~~vi~v~~npetv----s~~~----~~aD-~~y~e~~~--~ 618 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYC---CVHAVLALREAGYETIMVNCNPETV----STDY----DTSD-RLYFEPLT--L 618 (1066)
T ss_pred CCceEEEECccccccccccccchh---HHHHHHHHHHCCCEEEEEeCCcccc----cccc----chhh-heeecCCC--H
Confidence 457999998765 7899997 7788999999999999876555421 0000 0000 01111111 0
Q ss_pred CcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCc
Q 002207 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE 230 (953)
Q Consensus 151 ~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~ 230 (953)
..+.++.+ .+++|.|++.+.|..+. .+...|+.+|+|++|+++.++.+|+||..++++|+++|||+|++..+.+.+
T Consensus 619 e~v~~i~~--~e~~dgVi~~~g~~~~~--~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~e 694 (1066)
T PRK05294 619 EDVLEIIE--KEKPKGVIVQFGGQTPL--KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVE 694 (1066)
T ss_pred HHHHHHHH--HcCCCEEEEEeCchhHH--HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHH
Confidence 00111221 35899999999877653 567889999999999999999999999999999999999999999887643
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+ +.++.+ .++||+||||..+++|.|+.+|+|.+|+...+.+.+....+..+|||+||+|.+|++|.++.++
T Consensus 695 e----~~~~~~-----~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg 765 (1066)
T PRK05294 695 E----ALEVAE-----EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDG 765 (1066)
T ss_pred H----HHHHHH-----hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecC
Confidence 2 223332 3689999999999999999999999998877666544345678999999998339999999642
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC-CCCCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP-PRFPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P-a~l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
. ...+....+.. . ......+. +....| ..++++..+++++++.+++++||++|+++|
T Consensus 766 --~--~v~i~~i~e~i----------------~-~~gv~~Gd-s~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~v 823 (1066)
T PRK05294 766 --E--DVLIGGIMEHI----------------E-EAGVHSGD-SACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNV 823 (1066)
T ss_pred --C--eEEEeeeEEee----------------e-eccccCCC-CcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEE
Confidence 1 12221222110 0 01112222 334445 469999999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
||++ + +|++||+||||+++ ..+|.+.+++|+++.+++.+++
T Consensus 824 qf~~-----------------~-~~~~yViEiNpR~s----~t~~~~s~atGi~~~~~~~~~~ 864 (1066)
T PRK05294 824 QFAV-----------------K-DDEVYVIEVNPRAS----RTVPFVSKATGVPLAKIAARVM 864 (1066)
T ss_pred EEEE-----------------E-CCeEEEEEEecCCC----ccHHHHHHHhCccHHHHHHHHH
Confidence 9986 3 56799999999986 3467788899999888775543
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=290.85 Aligned_cols=304 Identities=13% Similarity=0.116 Sum_probs=221.5
Q ss_pred CcCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||.+|+ +.|+|++ +.+++++|++.||+|+.++.+++......+ ..| .++.++..
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~---~v~~i~al~~~G~~vI~v~~npetvs~d~~--------~~D-~ly~ep~~--- 617 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYC---CVHAVLALRELGYETIMINYNPETVSTDYD--------TSD-RLYFEPLT--- 617 (1050)
T ss_pred CCceEEEecCcccccccccccchH---HHHHHHHHHhCCCEEEEEecCCcccccccc--------ccc-eEEEecCC---
Confidence 456999998764 7899996 889999999999999988765542100000 000 01111111
Q ss_pred CcchhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCC
Q 002207 151 GSLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229 (953)
Q Consensus 151 ~~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~ 229 (953)
...+... ..+++|.|++.++|..+ -.+...|+.+|+|++|+++.++..|.||..++++|+++|||+|++..+.+.
T Consensus 618 --~e~vl~i~~~e~idgVI~~~gg~~~--~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ 693 (1050)
T TIGR01369 618 --FEDVMNIIELEKPEGVIVQFGGQTP--LNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV 693 (1050)
T ss_pred --HHHHHHHHhhcCCCEEEEccCcHhH--HHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH
Confidence 1111111 13579999999877543 246778899999999999999999999999999999999999999998764
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++ +.++.+ .++||+||||..+++|.|+.+|+|.+|+.+...+++....+..+|||+||+||+|+++.++.+
T Consensus 694 ee----~~~~~~-----~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d 764 (1050)
T TIGR01369 694 EE----AVEFAS-----EIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSD 764 (1050)
T ss_pred HH----HHHHHH-----hcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEe
Confidence 42 333332 368999999999999999999999999887777655434556799999999559999999964
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
+ +..++....|.. . ......+. +....|+ .+++++.++|++++.+++++||++|.++
T Consensus 765 ~----g~v~i~~i~e~~----------------~-~~gv~sGd-s~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~ 822 (1050)
T TIGR01369 765 G----EEVLIPGIMEHI----------------E-EAGVHSGD-STCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMN 822 (1050)
T ss_pred C----CEEEEEEEEEee----------------c-ccCCcCCC-ceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEE
Confidence 2 222222222210 0 11112222 4455676 6899999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
|||++ + +|++|++|||++++ ..+|.+.+++|+++.+++.++
T Consensus 823 vqf~~-----------------~-~~~~yvIEvNpR~s----~t~p~vs~atGi~l~~~~~~~ 863 (1050)
T TIGR01369 823 IQFAV-----------------K-DGEVYVIEVNPRAS----RTVPFVSKATGVPLIKLATRV 863 (1050)
T ss_pred EEEEE-----------------E-CCeEEEEEEeCCCC----chHHHHHHHHCCCHHHHHHHH
Confidence 99986 3 56799999999986 345777889999987776444
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=261.91 Aligned_cols=307 Identities=16% Similarity=0.171 Sum_probs=208.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+||.+|.. |..+++++++.||+++.++.+.+........ .|..+.+.+. ...+.....
T Consensus 3 ~~ililg~g~~---------~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~--------ad~~~~~~~~~~~~~~~d~~~ 65 (450)
T PRK06111 3 QKVLIANRGEI---------AVRIIRTCQKLGIRTVAIYSEADRDALHVKM--------ADEAYLIGGPRVQESYLNLEK 65 (450)
T ss_pred ceEEEECCcHH---------HHHHHHHHHHcCCeEEEEechhhccCcchhh--------CCEEEEcCCCCccccccCHHH
Confidence 58999998876 7888899999999999876544321111100 0000000000 000000011
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|. +|...|++.++..|+.+|+|++|+++.++.++.||..+|++|+++|||+|++. .+.+.
T Consensus 66 l~~~~~~~~id~I~p~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~--- 141 (450)
T PRK06111 66 IIEIAKKTGAEAIHPG-YGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDA--- 141 (450)
T ss_pred HHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCH---
Confidence 1111 23478999997 46678888899999999999999999999999999999999999999999973 33221
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.++.++.+ .++||+||||+.+++|.||.++++.+|+.+....... ...++.++||+||+|++|+++.++.
T Consensus 142 -~e~~~~~~-----~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 215 (450)
T PRK06111 142 -EEAIAIAR-----QIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLA 215 (450)
T ss_pred -HHHHHHHH-----HhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEE
Confidence 22333332 3678999999999999999999999997766554221 1135689999999987899999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+.+|+ .+.+.+.+. .+.....+ .....|+. +++++.+++++.+.+++++||++|++
T Consensus 216 ~~~g~---~~~~~~~~~--------------~~~~~~~~------~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~ 272 (450)
T PRK06111 216 DTHGN---TVYLWEREC--------------SVQRRHQK------VIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAG 272 (450)
T ss_pred cCCCC---EEEEEeecc--------------cccccccc------eEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCce
Confidence 54332 222111110 01110001 11123443 78899999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++||++ +++|++||+|||++++.+ ++....++|+++. +.+++.++..
T Consensus 273 ~ve~~~-----------------~~~g~~~viEiN~R~~~~----~~~~~~~~Gvd~~---~~~i~~~~G~ 319 (450)
T PRK06111 273 TIEFLV-----------------DEQKNFYFLEMNTRLQVE----HPVTEEITGIDLV---EQQLRIAAGE 319 (450)
T ss_pred eEEEEE-----------------cCCCCEEEEEEECCcCCc----chhhHHHhCcCHH---HHHHHHhcCC
Confidence 999986 567789999999999743 3455567899764 4455565654
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=278.97 Aligned_cols=343 Identities=17% Similarity=0.187 Sum_probs=235.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.|++++.++.+.+........+ |..+.+.+ ..........
T Consensus 2 ~kvLI~g~Gei---------a~~iiraak~lGi~~v~v~sd~d~~a~~v~~A--------D~~v~l~~~~~~~sy~d~e~ 64 (1201)
T TIGR02712 2 DTVLIANRGEI---------AVRIIRTLRRMGIRSVAVYSDADAASQHVLDA--------DEAVCLGGAPAAESYLDIDK 64 (1201)
T ss_pred cEEEEECCCHH---------HHHHHHHHHHcCCeEEEEECCCCCCccchhhC--------CEEEEcCCCCcccCCCCHHH
Confidence 48999987765 88899999999999998887665322111101 10010100 0000101111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE-EecCCccch
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNE 233 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~-~~~~~~~~~ 233 (953)
+.+. ...++|+|+|.. |...|+..++..|+.+|++|+|+++.++.++.||..+|++|+++|||++++. .+.+.+
T Consensus 65 Il~~a~~~~idaIiPG~-gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~d--- 140 (1201)
T TIGR02712 65 ILAAAKKTGAQAIHPGY-GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLD--- 140 (1201)
T ss_pred HHHHHHHHCCCEEEeCC-cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHH---
Confidence 1111 234799999976 5678899999999999999999999999999999999999999999998854 444322
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++.++.+ .++||+||||..+++|+||.+|++.+|+.+....... ...+..++||+||+|++|+++.++++
T Consensus 141 -ea~~~a~-----~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~D 214 (1201)
T TIGR02712 141 -EALEAAK-----EIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGD 214 (1201)
T ss_pred -HHHHHHH-----hcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEEC
Confidence 2223222 3689999999999999999999999987655443321 11245799999999779999999975
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
+.+ ..+. .++... .+..+. ......+|+ .+++++.++|++.|.+++++||++|.++
T Consensus 215 g~g---~vv~--lg~rd~------------s~qr~~------~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~ 271 (1201)
T TIGR02712 215 GKG---KVVA--LGERDC------------SLQRRN------QKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGT 271 (1201)
T ss_pred CCC---eEEE--eeEEEe------------eeEecC------ccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEE
Confidence 433 2222 222110 011111 113344676 4899999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCC---
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY--- 465 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~--- 465 (953)
|||+++ ..+|++||+||||+++.+ .|.....+|+++ ++.+++.|+.....+...
T Consensus 272 VEfild----------------~~~g~~y~lEVNpRlq~~----~~lte~~tGvDl---ve~~ir~a~G~~~~~~~~~~~ 328 (1201)
T TIGR02712 272 VEFIYD----------------EARDEFYFLEVNTRLQVE----HPVTEMVTGLDL---VEWMIRIAAGELPDFASLNIS 328 (1201)
T ss_pred EEEEEE----------------CCCCCEEEEEEECCcCcc----hhhHHHHhCCCH---HHHHHHHHcCCCCCccccccc
Confidence 999872 235789999999999754 244445789964 556677777654332211
Q ss_pred -CCcceecccccccCCCccccccCCCceE
Q 002207 466 -NSVSSHLPGRSSGSKPTEALNKREGIRE 493 (953)
Q Consensus 466 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (953)
...++++..|+.++++...|.++.+..+
T Consensus 329 ~~~~g~ai~~riyae~p~~~~~p~~G~l~ 357 (1201)
T TIGR02712 329 LTPRGAAIEARVYAENPAKNFQPSPGLLT 357 (1201)
T ss_pred cccceEEEEEEEeccCcccCcCCCCceee
Confidence 2346899999998888777777666654
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=253.39 Aligned_cols=279 Identities=18% Similarity=0.107 Sum_probs=193.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
++|+||.||+. |+.++.++++.||+|+.++.+++..... .. +..+ . ..+. ..+..
T Consensus 3 ~~igilG~Gql---------~~ml~~aa~~lG~~v~~~d~~~~~pa~~------~a----d~~~-~----~~~~-D~~~l 57 (372)
T PRK06019 3 KTIGIIGGGQL---------GRMLALAAAPLGYKVIVLDPDPDSPAAQ------VA----DEVI-V----ADYD-DVAAL 57 (372)
T ss_pred CEEEEECCCHH---------HHHHHHHHHHcCCEEEEEeCCCCCchhH------hC----ceEE-e----cCCC-CHHHH
Confidence 57999999974 7888899999999999886555422111 00 0000 0 0000 01122
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+...+|+|-.-+. --+...-..++.. ..+++++.+..+++||..+|++|+++|||+|++..+.+.+. +.
T Consensus 58 ~~~a~~~dvit~e~e---~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~----l~ 128 (372)
T PRK06019 58 RELAEQCDVITYEFE---NVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAED----LE 128 (372)
T ss_pred HHHHhcCCEEEeCcC---CCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHH----HH
Confidence 223347898754332 1122222334444 34679999999999999999999999999999999876432 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
++.+ .++||+||||+++| +|.|+.++++.+|+.+....+ .+..+|||+||++++|+++.++++.+ +.
T Consensus 129 ~~~~-----~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~ivEe~I~~~~E~sv~~~~~~~---G~ 196 (372)
T PRK06019 129 AALA-----DLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL----GSVPCILEEFVPFEREVSVIVARGRD---GE 196 (372)
T ss_pred HHHH-----HcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc----CCCCEEEEecCCCCeEEEEEEEECCC---CC
Confidence 3322 36889999999976 699999999999977665543 34689999999966999999887433 33
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.++.++.|... .+++++ ....|+.+++++.+++++++.+++++||+.|+.+||||+
T Consensus 197 ~~~~p~~e~~~----------~~gi~~-----------~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~--- 252 (372)
T PRK06019 197 VVFYPLVENVH----------RNGILR-----------TSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFV--- 252 (372)
T ss_pred EEEeCCcccEE----------eCCEEE-----------EEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEE---
Confidence 44444443221 111211 234788999999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+++|++||+||||+|+-+.+.. -.++|+|.
T Consensus 253 --------------~~dg~~~v~EinpR~~~sg~~t----~~~~~~sq 282 (372)
T PRK06019 253 --------------TGDGELLVNEIAPRPHNSGHWT----IEACSTSQ 282 (372)
T ss_pred --------------cCCCeEEEEEecCCccCcccEE----hhhcCccH
Confidence 5788999999999998654321 24567764
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=251.51 Aligned_cols=289 Identities=20% Similarity=0.170 Sum_probs=197.3
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
+|+||.||+. ++.++.++++.||+|+.++.+++..... . .|..+ ... + .-.+.+.
T Consensus 1 ~igiiG~gql---------~~~l~~aa~~lG~~v~~~d~~~~~p~~~------~----ad~~~-~~~----~-~d~~~i~ 55 (352)
T TIGR01161 1 TVGILGGGQL---------GRMLALAARPLGIKVHVLDPDANSPAVQ------V----ADHVV-LAP----F-FDPAAIR 55 (352)
T ss_pred CEEEECCCHH---------HHHHHHHHHHcCCEEEEECCCCCCChhH------h----CceeE-eCC----C-CCHHHHH
Confidence 4899999865 7888999999999999876554421110 0 01000 000 0 0011222
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.+...+|++-.-. . .-+......|+..|+| +++++.++.+++||..+|++|+++|||+|++..+.+.+ ++.+
T Consensus 56 ~~a~~~dvit~e~-e--~i~~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~----~~~~ 127 (352)
T TIGR01161 56 ELAESCDVITFEF-E--HVDVEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE----ELDA 127 (352)
T ss_pred HHHhhCCEEEeCc-C--cCCHHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH----HHHH
Confidence 2334678764322 1 1123344667888887 56899999999999999999999999999999987643 2333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
+.+ .++||+||||..+| +|.|+.++++.+|+.+..... .+..+||||||+|++|+++.++.+.+| ..
T Consensus 128 ~~~-----~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~I~~~~E~sv~~~~~~~G---~~ 195 (352)
T TIGR01161 128 ALQ-----ELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL----GDRECIVEEFVPFERELSVIVARSADG---ET 195 (352)
T ss_pred HHH-----HcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc----CCCcEEEEecCCCCeEEEEEEEEcCCC---CE
Confidence 332 36789999999987 799999999999977655542 245899999999669999999864332 33
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~ 397 (953)
.+.++.+... ..+++ .....|+.+++++.+++++++.+++++||+.|+.+|||++
T Consensus 196 ~~~~~~~~~~----------~~g~~-----------~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~---- 250 (352)
T TIGR01161 196 AFYPVVENIH----------QDGIL-----------RYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFV---- 250 (352)
T ss_pred EEECCcccEE----------eCCEE-----------EEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEE----
Confidence 3334332110 00111 1234788999999999999999999999999999999986
Q ss_pred CccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+++|++||+||||+||-+.+.. ...++.|. ++..++.++.
T Consensus 251 -------------~~dg~~~v~EinpR~~~sg~~~----~~~~~~s~---f~~~~ra~~g 290 (352)
T TIGR01161 251 -------------LPDGRLLINELAPRVHNSGHYT----LDGCSTSQ---FEQHLRAILG 290 (352)
T ss_pred -------------eCCCcEEEEEecCCCCCcCcCc----hhhccccH---HHHHHHHHcC
Confidence 6788999999999998554321 13456653 3344444443
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=252.61 Aligned_cols=294 Identities=18% Similarity=0.131 Sum_probs=200.2
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+||.||+. |+.+++++++.||+|+.++.+++...... ++..+...... ...+..+++
T Consensus 1 kililG~g~~---------~~~l~~aa~~~G~~v~~~d~~~~~~~~~~----------ad~~~~~~~~d--~~~l~~~~~ 59 (380)
T TIGR01142 1 RVLLLGSGEL---------GKEVAIEAQRLGVEVIAVDRYANAPAMQV----------AHRSYVINMLD--GDALRAVIE 59 (380)
T ss_pred CEEEECCCHH---------HHHHHHHHHHcCCEEEEEeCCCCCchhhh----------CceEEEcCCCC--HHHHHHHHH
Confidence 6899998875 78888999999999998876554221110 01000000000 000111111
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccchhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..++|+|++....- ....-..|+.+|+|+ .+++.+..+|+||..+++++ +++|||+|++..+.+.+. +.
T Consensus 60 --~~~id~v~~~~e~v---~~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~----~~ 129 (380)
T TIGR01142 60 --REKPDYIVPEIEAI---ATDALFELEKEGYFV-VPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDE----LR 129 (380)
T ss_pred --HhCCCEEEeccCcc---CHHHHHHHHhcCCee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHH----HH
Confidence 23799999976431 112224678899874 57899999999999999985 899999999998876432 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc--CCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~--~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
.+.+ .++||+||||..+++|.||.+|++.+|+.+....+... ..++.+|||+||+|+.|+++.++.+.+|
T Consensus 130 ~~~~-----~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~~g--- 201 (380)
T TIGR01142 130 EAVE-----KIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHVDG--- 201 (380)
T ss_pred HHHH-----HcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcCCC---
Confidence 3322 36899999999999999999999999987666554321 2356899999999768999998864322
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
......+.+ .+....+|. ....|+.+++++.+++++.+.+++++||+.|++++||++
T Consensus 202 ~~~~~~~~~----------------~~~~~~~~~-----~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~-- 258 (380)
T TIGR01142 202 NTTFCAPIG----------------HRQIDGDYH-----ESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFV-- 258 (380)
T ss_pred CEEEecCcc----------------eEEeCCeeE-----EEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE--
Confidence 222222211 111222222 245789999999999999999999999999999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+++ .+||+|||++||.+.+. .+. ..|+++.++ .++.++.
T Consensus 259 ---------------~~~-~~~viEinpR~~~~~~~---~~~-~~g~~~~~~---~~r~~~G 297 (380)
T TIGR01142 259 ---------------KGD-EVIFSEVSPRPHDTGMV---TLI-SQGLSEFAL---HVRAILG 297 (380)
T ss_pred ---------------ECC-cEEEEEeecCCCCCceE---Eee-ecCCCHHHH---HHHHHcC
Confidence 444 59999999999966432 121 238876544 4555554
|
This enzyme is an alternative to PurN (TIGR00639) |
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=246.17 Aligned_cols=355 Identities=17% Similarity=0.197 Sum_probs=254.3
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchhHHHh-hccCcCEEEEcCCCC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSEFAEH-LAANVDIVFPTIHGR 174 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~vf~~lhG~ 174 (953)
|..|++++++.|+..+.+|-|.|.+..+..-+ |-.+.+.+ -.++......++.. .+-..|.|-|-. |.
T Consensus 14 AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~A--------DEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGY-GF 84 (645)
T COG4770 14 ACRVIRTARDLGIRTVAVYSDADADALHVRMA--------DEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGY-GF 84 (645)
T ss_pred hHHHHHHHHHcCCceEEEEecCCCCchhhhhc--------chhhhcCCCchhhhhccHHHHHHHHHHhCcccccCCc-cc
Confidence 88999999999999999999888766543221 11111110 01111111122111 122455544433 34
Q ss_pred CCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEE
Q 002207 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254 (953)
Q Consensus 175 ~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvV 254 (953)
..||..+.+.++..|+-|+|+++.++....||..+|.++.++|+|+.|.+.=... +.+++..+. ++++|||+|
T Consensus 85 LSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~q--d~~~~~~~A-----~eiGyPVlI 157 (645)
T COG4770 85 LSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQ--DAAELVAIA-----EEIGYPVLI 157 (645)
T ss_pred cccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCccc--CHHHHHHHH-----HhcCCcEEE
Confidence 4499999999999999999999999999999999999999999999998643221 223343333 248899999
Q ss_pred eeCCCCCceeEEEeCCHHHHHHH---HHHhHhcC-CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEecc
Q 002207 255 KPTRAGSSIGVTVAYGVIDSLKK---AKGIILEG-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ 330 (953)
Q Consensus 255 KP~~~gsS~GV~~v~~~~el~~~---a~~~~~~~-~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~ 330 (953)
|+..||+++|+.+|.+.+|+.+. +.+..... -|++++||+|+.-.|.+++.|++|.+|| .+.+ +|..
T Consensus 158 KAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGN---vv~L--gERd---- 228 (645)
T COG4770 158 KASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGN---VVHL--GERD---- 228 (645)
T ss_pred EeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCC---EEEe--eccc----
Confidence 99999999999999998765433 32221112 4689999999977799999999987776 2222 2221
Q ss_pred CccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccC
Q 002207 331 GSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409 (953)
Q Consensus 331 ~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~ 409 (953)
.+.+..++ ++....|++ ++++++++|-+.|.+++++.|+.|-+.|+|++
T Consensus 229 -----------CSlQRRhQ---KVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFiv---------------- 278 (645)
T COG4770 229 -----------CSLQRRHQ---KVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIV---------------- 278 (645)
T ss_pred -----------cchhhhcc---hhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEE----------------
Confidence 12222332 344557887 89999999999999999999999999999987
Q ss_pred cccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCCC--CcceecccccccCCCcccccc
Q 002207 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYN--SVSSHLPGRSSGSKPTEALNK 487 (953)
Q Consensus 410 ~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 487 (953)
+.++.+||+|+||+-..+. |..-.-+|+ ||+..+|+.|....-.+.+-. --+|+|+-||.+++|.+.|-|
T Consensus 279 -d~~~~f~FlEMNTRLQVEH----PVTE~iTGi---DLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r~FLP 350 (645)
T COG4770 279 -DADGNFYFLEMNTRLQVEH----PVTELITGI---DLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLP 350 (645)
T ss_pred -cCCCcEEEEEeecceeccc----cchhhhhhh---HHHHHHHHHhcCCcCCcccccccccceeEEEEEeccCcccCccC
Confidence 6788899999999988764 333345677 789999999877632222111 126999999999999999999
Q ss_pred CCCceEEEEecCCCcccceeccccHHHH
Q 002207 488 REGIREVFVIFGGDTSERQVSLMSGTNV 515 (953)
Q Consensus 488 ~~~~~~v~vl~GG~s~E~~vS~~s~~~v 515 (953)
+++++..+....|....-|-.+..|..|
T Consensus 351 s~G~l~~~~~P~~~~vRvDsGV~~G~~I 378 (645)
T COG4770 351 STGRLTRYRPPAGPGVRVDSGVREGDEI 378 (645)
T ss_pred CCceeEeecCCCCCceecccCcccCCcc
Confidence 9999999988888655555555555443
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=279.19 Aligned_cols=301 Identities=14% Similarity=0.126 Sum_probs=217.6
Q ss_pred CcCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||.+|+ +.|+|++ +-+++++|++.||+++.++.+++....... ..| .++.++..
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~---~v~~~~aLk~~G~~vI~vn~npetvs~~~~--------~aD-~~y~ep~~--- 618 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYS---SVHAAFALKKEGYETIMINNNPETVSTDYD--------TAD-RLYFEPLT--- 618 (1068)
T ss_pred CCceEEEecccccccccccccchh---HHHHHHHHHHcCCEEEEEeCCccccccccc--------cCc-eEEEccCC---
Confidence 457999998864 7899996 788899999999999987765542110000 001 01111111
Q ss_pred CcchhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCC
Q 002207 151 GSLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229 (953)
Q Consensus 151 ~~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~ 229 (953)
...+... ..+++|.|++.++|... ..+...|+.+|+|+.|+++.++..|.||..++++|+++|||+|++..+.+.
T Consensus 619 --~e~vl~I~~~e~~dgVI~~~g~~~~--~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ 694 (1068)
T PRK12815 619 --LEDVLNVAEAENIKGVIVQFGGQTA--INLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE 694 (1068)
T ss_pred --HHHHHHHHhhcCCCEEEEecCcHHH--HHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH
Confidence 1111111 14589999998877642 346778899999999999999999999999999999999999999988764
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++ +.++.+ .++||+||||..+++|.|+.+|++.+|+.+...+.. ..+..+|||+||+| +|+++.++.+
T Consensus 695 ee----~~~~~~-----~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~--s~~~~vlIeefI~G-~E~~Vd~i~d 762 (1068)
T PRK12815 695 EE----AFAFAK-----RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA--SQLYPILIDQFIDG-KEYEVDAISD 762 (1068)
T ss_pred HH----HHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh--cCCCCEEEEEeecC-ceEEEEEEEc
Confidence 42 222222 378999999999999999999999999877666542 35678999999997 9999999964
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEc-CCCCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~-Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
+. ...+....|.. .... ...+. +.... |..++++..++|++.+.+++++||++|+.+
T Consensus 763 g~----~v~i~~i~e~~----------------e~~g-v~sGd-s~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~n 820 (1068)
T PRK12815 763 GE----DVTIPGIIEHI----------------EQAG-VHSGD-SIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMN 820 (1068)
T ss_pred CC----ceEEeeEEEEe----------------eccC-CcCCC-eeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEE
Confidence 31 11111111110 0111 12222 23334 556999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
+||++ + +|++|++||||+++ ..+|.+.+++|+++.++..++
T Consensus 821 iqf~v-----------------~-~~~~yviEiNpR~s----~t~~~~skatGv~l~~~~~~~ 861 (1068)
T PRK12815 821 IQFVL-----------------A-NDEIYVLEVNPRAS----RTVPFVSKATGVPLAKLATKV 861 (1068)
T ss_pred EEEEE-----------------E-CCcEEEEEEeCCCC----ccHHHHHHHHCCCHHHHHHHH
Confidence 99986 3 46799999999998 345777889999987766443
|
|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=251.59 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=183.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHH---HHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLL---EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~ll---E~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++ ..|++.++++. +.+|||+.|++..++++++||..+|++ |+++|||||+|..+++.+
T Consensus 67 ~~iD~Vv~-----g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~---l~~~gIpt~~~~~~~~~~----- 133 (426)
T PRK13789 67 NPFDLIVV-----GPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSL---MKEAKIPTASYKTFTEYS----- 133 (426)
T ss_pred cCCCEEEE-----CCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHH---HHHcCCCCCCeEeeCCHH-----
Confidence 46899997 34888777554 559999999999999999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++.++... .+. ..+..+|||||
T Consensus 134 ---ea~~~~~~~-~~PvVVKp~~~~~gkGV~vv~~~eel~~---a~~~~~~~~---~~g----------~~~~~vlIEEf 193 (426)
T PRK13789 134 ---SSLSYLESE-MLPIVIKADGLAAGKGVTVATEKKMAKR---ALKEIFKDK---KFG----------QSGNQVVIEEF 193 (426)
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhhc---ccc----------CCCCeEEEEEC
Confidence 233445678 6999999999999999999999988875 566554320 000 01357999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+++ .+...|..+ ....+|+++.+++.|.+..++|++. +
T Consensus 194 l~G~-------------------------E~Sv~~~~dg~-~~~~lp~~~--d~k~~~d~d~g~~tggmg~~~P~p~--~ 243 (426)
T PRK13789 194 MEGQ-------------------------EASIFAISDGD-SYFLLPAAQ--DHKRAFDGDQGPNTGGMGAYCPAPV--I 243 (426)
T ss_pred cCCe-------------------------EEEEEEEECCC-EEEEccceE--ecccccCCCCCCCCCCceEEeeCCC--C
Confidence 9997 99999998654 333344433 2346889999998777778888874 6
Q ss_pred CHHHHHHHHH-HHHHHH---HHcC--CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQ-RIELIA---NALQ--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~-~a~~~~---~aLg--~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++++ ++++++ +++| +.|+.++|||++. +|++||||+|++||.+....+.++. -.+|++.
T Consensus 244 ~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g~~~vlE~n~R~Gdpe~~~ll~~l--------~~dl~~~ 314 (426)
T PRK13789 244 TEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EGEPKVVEFNCRFGDPETQCVLAML--------DGDLLEL 314 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCCEEEEEEecCCCCcHhhhhhccC--------CCCHHHH
Confidence 8888888865 445555 4445 6899999999985 6889999999999987665433322 1366665
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
++..+.
T Consensus 315 ~~~~~~ 320 (426)
T PRK13789 315 LYAAST 320 (426)
T ss_pred HHHHHc
Confidence 555544
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=251.17 Aligned_cols=303 Identities=18% Similarity=0.197 Sum_probs=196.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC--CceeeecccccccCCCCCccccccccccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
|||+||.||.. +..+++++++.|+.+.++ ++++ +.... ...........|.+ .+.+
T Consensus 1 ~kiliiG~G~~---------~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~d~~-----------~l~~ 58 (423)
T TIGR00877 1 MKVLVIGNGGR---------EHALAWKLAQSPLVKYVY-VAPGNAGTARL-AKNKNVAISITDIE-----------ALVE 58 (423)
T ss_pred CEEEEECCChH---------HHHHHHHHHhCCCccEEE-EECCCHHHhhh-cccccccCCCCCHH-----------HHHH
Confidence 69999999987 566778888888766544 3332 11000 00000000001100 0112
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
+.+ +.++|+||+..+... -..+...|+.+|+|++|+++.++.+++||+.+|++|+++|||+|++..+.+.+.
T Consensus 59 ~~~--~~~id~vi~~~e~~l--~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~---- 130 (423)
T TIGR00877 59 FAK--KKKIDLAVIGPEAPL--VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEE---- 130 (423)
T ss_pred HHH--HhCCCEEEECCchHH--HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHH----
Confidence 222 347999998654211 134678999999999999999999999999999999999999999998876432
Q ss_pred hhhhhhhcCCCCCCCc-EEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC---CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 236 LSNWFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG---IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~P-vvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~---~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.++++ .++|| +||||..+++|.||.++++.+|+.+.+.+++... .+..+|||+||+| +|+++.++.++
T Consensus 131 ~~~~~~-----~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~dg- 203 (423)
T TIGR00877 131 ALSYIQ-----EKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAFVDG- 203 (423)
T ss_pred HHHHHH-----hcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEEEcC-
Confidence 333332 36789 9999999999999999999999877766654321 2357999999998 99999999642
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHH-HHH---HHHHHHHhC--CC
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSI-REG---ASLLFQRLG--LC 384 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i-~~~---a~~~~~aLg--~~ 384 (953)
. ....++..+. ...++++..+...++ .....|++ ++++..+++ .++ +.+++.++| ++
T Consensus 204 -~--~~~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~ 267 (423)
T TIGR00877 204 -K--TVIPMPPAQD------------HKRALEGDKGPNTGG-MGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYK 267 (423)
T ss_pred -C--eEEeceeeee------------eeecccCCCCCCCCC-CceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 1 2222233221 123455544443332 33456663 777655443 334 445555555 67
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcc-hHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS-FLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S-~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|..++||++ +++| +||+|||+++|-+.+. ++| ..+.+ +.+.++..+...
T Consensus 268 G~~~ie~~~-----------------t~~g-~~viEin~R~g~~~~~~~~~----~~~~d---l~~~~~~~~~g~ 317 (423)
T TIGR00877 268 GVLYAGLML-----------------TKEG-PKVLEFNCRFGDPETQAVLP----LLKSD---LLEVCLAAVEGK 317 (423)
T ss_pred eEEEEEEEE-----------------ECCC-cEEEEEEccCCCccceeEec----ccCCC---HHHHHHHHHcCC
Confidence 999999986 5677 9999999999966543 233 23454 444455555543
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-24 Score=251.79 Aligned_cols=211 Identities=18% Similarity=0.126 Sum_probs=163.8
Q ss_pred CcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHH
Q 002207 635 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~ 714 (953)
.|++....+...- ..+ ..|+..|+| +++++.+..+|+||..+|++ |+++|||||+|..+.+.+ .+
T Consensus 84 ~dvIt~e~e~v~~--~~l-~~le~~gi~-v~ps~~al~i~~DK~~~K~~---l~~~GIptp~~~~v~~~~--------el 148 (577)
T PLN02948 84 CDVLTVEIEHVDV--DTL-EALEKQGVD-VQPKSSTIRIIQDKYAQKVH---FSKHGIPLPEFMEIDDLE--------SA 148 (577)
T ss_pred CCEEEEecCCCCH--HHH-HHHHhcCCc-cCCCHHHHHHhcCHHHHHHH---HHHCCcCCCCeEEeCCHH--------HH
Confidence 6887766554432 234 788999998 58999999999999999999 899999999999886532 24
Q ss_pred HHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 715 HELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 715 ~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
.++.+++ +||+||||.++| +|.|+++|++.+||.. +++.++.+ +..+|||+||++.
T Consensus 149 ~~~~~~i-g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~---a~~~~~~~-------------------~~~vlvEefI~~~ 205 (577)
T PLN02948 149 EKAGDLF-GYPLMLKSRRLAYDGRGNAVAKTEEDLSS---AVAALGGF-------------------ERGLYAEKWAPFV 205 (577)
T ss_pred HHHHHhc-CCcEEEEeCCCCCCCCCeEEECCHHHHHH---HHHHhhCC-------------------CCcEEEEecCCCC
Confidence 4556778 699999999988 5999999999999875 55555433 5679999999985
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~ 873 (953)
+|++|.++++.+..+...|..+......+++ ..+.|+. +++++
T Consensus 206 ------------------------~EisV~v~r~~~G~i~~~p~~E~~~~~~~~~----------~~~~Pa~---l~~~~ 248 (577)
T PLN02948 206 ------------------------KELAVMVARSRDGSTRCYPVVETIHKDNICH----------VVEAPAN---VPWKV 248 (577)
T ss_pred ------------------------eEEEEEEEECCCCCEEEecCcccEEECCeeE----------EEEECCC---CCHHH
Confidence 4999999976433222334433222222221 2246776 68999
Q ss_pred HHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 874 ~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
.++++++|++++++|++.|++|||||++. +|++||+||||+||.+.+
T Consensus 249 ~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EInpRpg~sGh 295 (577)
T PLN02948 249 AKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEVAPRPHNSGH 295 (577)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEEeCCCCCCCc
Confidence 99999999999999999999999999985 689999999999997664
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=236.86 Aligned_cols=355 Identities=17% Similarity=0.192 Sum_probs=247.7
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchhHHHh-hccCcCEEEEcCCCC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSEFAEH-LAANVDIVFPTIHGR 174 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~vf~~lhG~ 174 (953)
|..|++.+++.|+..+.+|-|.|-+..+...+ |-...+.+ -.+....+..+.+. .....-.|-|.. |.
T Consensus 10 AcRVirTakkmGI~tVAV~Sd~D~~SlHVk~A--------Deav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGY-GF 80 (670)
T KOG0238|consen 10 ACRVIRTAKKMGIRTVAVYSDADRNSLHVKMA--------DEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGY-GF 80 (670)
T ss_pred eehhhhHHHHhCCeEEEEEccCccccceeecc--------cceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCc-cc
Confidence 67889999999999999997777554443222 11111110 11112222222221 112344444433 44
Q ss_pred CCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEE
Q 002207 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254 (953)
Q Consensus 175 ~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvV 254 (953)
..|+..+.++|+..||-|+|+++.+++-..||...|++++++|+|+.|.+--.... .+++.+.. .+++||++|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs--~e~~~~~a-----~eIgyPvMi 153 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQS--DEEAKKVA-----REIGYPVMI 153 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCccccccc--HHHHHHHH-----HhcCCcEEE
Confidence 45899999999999999999999999999999999999999999999876432211 12233332 248899999
Q ss_pred eeCCCCCceeEEEeCCHHHHHHHHHHh---HhcC-CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEecc
Q 002207 255 KPTRAGSSIGVTVAYGVIDSLKKAKGI---ILEG-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ 330 (953)
Q Consensus 255 KP~~~gsS~GV~~v~~~~el~~~a~~~---~~~~-~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~ 330 (953)
|+..||+++|+.++.+.+|+.+..... .... .|+.+|+|+||+..|.+++.|++|..||. + ...|..
T Consensus 154 Ka~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGna---v--~l~ERd---- 224 (670)
T KOG0238|consen 154 KATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNA---V--HLGERD---- 224 (670)
T ss_pred EeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcE---E--Eecccc----
Confidence 999999999999999988755433221 1111 46789999999888999999999877762 2 222221
Q ss_pred CccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccC
Q 002207 331 GSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409 (953)
Q Consensus 331 ~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~ 409 (953)
..+.....| .....|++ ++++.+..+.+.|.++++++|+.|.+.|+|++
T Consensus 225 --------CSvQRRnQK------iiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~---------------- 274 (670)
T KOG0238|consen 225 --------CSVQRRNQK------IIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIV---------------- 274 (670)
T ss_pred --------cchhhhhhh------hhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEE----------------
Confidence 011112222 33446776 99999999999999999999999999999987
Q ss_pred cccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCCC--CcceecccccccCCCcccccc
Q 002207 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYN--SVSSHLPGRSSGSKPTEALNK 487 (953)
Q Consensus 410 ~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 487 (953)
|+.+++||+|+||+-..+. |..-.-+|. ||++.+|+.|......+.+-. --++++++|+.+++|...|.|
T Consensus 275 -D~~~~FyFmEmNTRLQVEH----PvTEmItg~---DLVewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEdp~~~f~P 346 (670)
T KOG0238|consen 275 -DSKDNFYFMEMNTRLQVEH----PVTEMITGT---DLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDPYKGFLP 346 (670)
T ss_pred -cCCCcEEEEEeeceeeecc----cchhhccch---HHHHHHHHHhcCCCCCCCcceeeecceEEEEEEeecCCcccCCC
Confidence 5678899999999888764 333233465 799999999877633232111 136999999999999999999
Q ss_pred CCCceEEEEecC-CCcccceeccccHHHH
Q 002207 488 REGIREVFVIFG-GDTSERQVSLMSGTNV 515 (953)
Q Consensus 488 ~~~~~~v~vl~G-G~s~E~~vS~~s~~~v 515 (953)
+.+++.-....+ +.+..-|--+.+|.+|
T Consensus 347 ~~G~L~~~~~p~~~~~vRvdtgV~~g~~v 375 (670)
T KOG0238|consen 347 SAGRLVYYSFPGHSPGVRVDTGVRSGDEV 375 (670)
T ss_pred CCccceeeccCCCCCCeeeecCcccCCcc
Confidence 999988766555 4555555555566554
|
|
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=249.31 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=171.2
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++... ...-..+...|+.+|+|++|+++.++.+|+||..+|++|+++|||+|++..+.+.+. +.++.+
T Consensus 61 ~~id~vi~~~e--~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~~~~ 134 (420)
T PRK00885 61 EGIDLTVVGPE--APLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEE----ALAYLD 134 (420)
T ss_pred hCCCEEEECCc--hHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHH----HHHHHH
Confidence 47999997432 111124567888899999999999999999999999999999999999998866432 223322
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
.++||+||||..+++|.||.+|++.+|+.+....++.. .....+||||||+| +|+++.++.++ . ..
T Consensus 135 -----~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g--~--~~ 204 (420)
T PRK00885 135 -----EKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFVDG--E--NV 204 (420)
T ss_pred -----HcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEECC--C--ce
Confidence 36789999999999999999999999987776665431 12468999999998 99999999632 1 22
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHH-HHHHHHHH---hC--CCCeeEee
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIRE-GASLLFQR---LG--LCDFARID 390 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~-~a~~~~~a---Lg--~~G~arVD 390 (953)
..++..+- ...+++...+...++ +....|++ ++++..+++++ ++.++.++ +| ++|+.++|
T Consensus 205 ~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve 271 (420)
T PRK00885 205 LPLPTAQD------------HKRAGDGDTGPNTGG-MGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAG 271 (420)
T ss_pred EeceeeEe------------eeecccCCCCCCCCC-CceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEE
Confidence 22222211 123444444433333 44567876 88887777764 65555554 44 46999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
|++ +++| +||+|||+++|.+.+ .++|. .+. ++++.++..+....
T Consensus 272 ~~~-----------------t~~g-~~viEin~R~g~~~~~~~~~~----~~~---d~~~~~~~~~~g~~ 316 (420)
T PRK00885 272 LMI-----------------TKDG-PKVIEFNARFGDPETQVVLPR----LKS---DLVELLLAAADGKL 316 (420)
T ss_pred EEE-----------------ECCC-cEEEEEecccCCccHHhhhhh----ccC---CHHHHHHHHHcCCC
Confidence 986 5566 899999999997643 33332 344 45556666666543
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=247.81 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=179.2
Q ss_pred cCcCEEEEcCCCCCCCc---hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGED---GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEd---g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++.. |+ ..+...|+.+|+||+|++..++++++||..+|++|+++|||||++..+.+.+ ++.+
T Consensus 61 ~~id~vvvg~-----E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~----e~~~ 131 (434)
T PLN02257 61 WGVGLVVVGP-----EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPA----AAKK 131 (434)
T ss_pred cCCCEEEECC-----chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHH----HHHH
Confidence 4799999664 33 2456777889999999999999999999999999999999999998886543 2333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++ .++||+||||..+++|+||.++++.+|+.+++.+++.. ..+..+|||+||+| +|+++.++.++ .
T Consensus 132 ~~~-----~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG--~- 202 (434)
T PLN02257 132 YIK-----EQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASFFALVDG--E- 202 (434)
T ss_pred HHH-----HcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEEEEEECC--C-
Confidence 332 36789999999999999999999999987766654321 13468999999998 99999888532 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HH---HHHHHHHhCCC--Cee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EG---ASLLFQRLGLC--DFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~---a~~~~~aLg~~--G~a 387 (953)
.+++..++. +...+|||+.+|..++ +...+|++ +++++.+++. ++ +.+++++.||. |+.
T Consensus 203 ---~~~pl~~~~----------dhkr~~d~d~g~ntgg-mg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl 268 (434)
T PLN02257 203 ---NAIPLESAQ----------DHKRVGDGDTGPNTGG-MGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVL 268 (434)
T ss_pred ---cEEEEEeee----------ecccccCCCCCCCCCC-CeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 122332222 1457999999997765 44445664 8888888754 43 44566787875 778
Q ss_pred EeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
++||++ + ++|.+||||+|++||++.+ ..+|. .+.+ |++.++..+..+.
T Consensus 269 ~ve~ml-----------------~~~~g~p~vLE~N~R~Gdpe~~~~l~~----l~~D---l~~~~~~~~~g~l 318 (434)
T PLN02257 269 YAGLMI-----------------EKKSGLPKLLEYNVRFGDPECQVLMMR----LESD---LAQVLLAACKGEL 318 (434)
T ss_pred EEEEEE-----------------EcCCCCEEEEEEECCCCCCchheEehh----hcCC---HHHHHHHHHcCCC
Confidence 999886 5 5778999999999999764 34443 4664 5555565555543
|
|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=246.98 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=177.9
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|.|++.. |+. .+...|+..|+||+||+..++++++||..+|++ |+++|||||+|..+.+.+
T Consensus 61 ~~id~vvvg~-----E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~---l~~~GIptp~~~~~~~~~----- 127 (434)
T PLN02257 61 WGVGLVVVGP-----EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDL---CDKYKIPTAKYETFTDPA----- 127 (434)
T ss_pred cCCCEEEECC-----chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHH---HHHcCCCCCCeEEeCCHH-----
Confidence 4678877542 442 344556778999999999999999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|+||.++++.+|+.+ +++.++.. +.+. .....+|||+|
T Consensus 128 ---e~~~~~~~~-g~PvVVKp~~~~~GkGV~iv~~~~el~~---a~~~~~~~---~~fg----------~~~~~vlIEef 187 (434)
T PLN02257 128 ---AAKKYIKEQ-GAPIVVKADGLAAGKGVVVAMTLEEAYE---AVDSMLVK---GAFG----------SAGSEVVVEEF 187 (434)
T ss_pred ---HHHHHHHHc-CCCEEEEcCCCCCCCCEEEECCHHHHHH---HHHHHHhh---hhcc----------CCCCeEEEEEC
Confidence 234455678 6999999999999999999999998875 45444311 0000 01468999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.++.. +.|...+.....+||++.+|+.+....+.|++. +
T Consensus 188 i~G~-------------------------E~Sv~~~~dG~~---~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~--l 237 (434)
T PLN02257 188 LDGE-------------------------EASFFALVDGEN---AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPV--L 237 (434)
T ss_pred CCCC-------------------------EEEEEEEECCCc---EEEEEeeeecccccCCCCCCCCCCCeeEecCCC--C
Confidence 9997 999988876432 233344444567999999998776677778764 6
Q ss_pred CHHHHHHHHH-H---HHHHHHHcCCc--ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQ-R---IELIANALQLE--GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~-~---a~~~~~aLg~~--G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++.+ . +.+++++.+|. |+.++||+++.++|++||||+|++||++....+-.. +-.||++.
T Consensus 238 ~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~--------l~~Dl~~~ 309 (434)
T PLN02257 238 TPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMR--------LESDLAQV 309 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehh--------hcCCHHHH
Confidence 7888777543 3 34556677776 788999999833578999999999999744321111 11366666
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
++..+.
T Consensus 310 ~~~~~~ 315 (434)
T PLN02257 310 LLAACK 315 (434)
T ss_pred HHHHHc
Confidence 666554
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=238.52 Aligned_cols=299 Identities=18% Similarity=0.104 Sum_probs=198.0
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
++++|||+||.||. .++.++.++++.||+|+.++.+++...... .+..+...... ...+
T Consensus 9 ~~~~~~ilIiG~g~---------~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~----------ad~~~~~~~~d--~~~l 67 (395)
T PRK09288 9 SPSATRVMLLGSGE---------LGKEVAIEAQRLGVEVIAVDRYANAPAMQV----------AHRSHVIDMLD--GDAL 67 (395)
T ss_pred CCCCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEeCCCCCchHHh----------hhheEECCCCC--HHHH
Confidence 34567999998884 377788899999999998876554211110 00000000000 0001
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHH-HCCCCCCCeEEecCCccc
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMS-KQGFITVPSFLLQGSEVN 232 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~-~~Giptp~~~~~~~~~~~ 232 (953)
.++.+ ..++|+|++..+... -..+. .++..|+|. .++..+..+++||..+|++|. ++|||+|++..+.+.+.
T Consensus 68 ~~~~~--~~~id~vi~~~e~~~--~~~~~-~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~- 140 (395)
T PRK09288 68 RAVIE--REKPDYIVPEIEAIA--TDALV-ELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEE- 140 (395)
T ss_pred HHHHH--HhCCCEEEEeeCcCC--HHHHH-HHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHH-
Confidence 11111 247999999765311 11233 456679885 477899999999999999994 79999999999876442
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC--CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~--~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+.++.. .++||+||||..+++|.||.+|++.+|+.+....++... .+..+||||||+++.|+++.++.++
T Consensus 141 ---l~~~~~-----~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~ 212 (395)
T PRK09288 141 ---LRAAVE-----EIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAV 212 (395)
T ss_pred ---HHHHHH-----hcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcC
Confidence 333322 368999999999999999999999999876665543211 1367999999995599999998643
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
++ ......+.+.. ... +.......|+.+++++.+++++++.+++++||+.|+.++|
T Consensus 213 ~~---~~~~~~~~~~~----------------~~~-----~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve 268 (395)
T PRK09288 213 DG---GTHFCAPIGHR----------------QED-----GDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVE 268 (395)
T ss_pred CC---CEEEecCcccE----------------EEC-----CEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEE
Confidence 21 22222221100 000 1101234688899999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
|++ +++ .+||+|||++||-+.... +. ..|+++. ...++.++.
T Consensus 269 ~~~-----------------~~~-~~~viEinpR~~~~~~~~---~~-~~g~~~~---~~~~~~~lG 310 (395)
T PRK09288 269 LFV-----------------KGD-EVYFSEVSPRPHDTGMVT---LI-SQNLSEF---ELHARAILG 310 (395)
T ss_pred EEE-----------------eCC-eEEEEEecCCCCCCccee---ee-ecccCHH---HHHHHHHcC
Confidence 986 455 599999999998654221 11 2277653 344455454
|
|
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=227.64 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=180.7
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhhccCcCEEEEcCCCCCCC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GE 177 (953)
.+.+.++|++.|+++..++++.....+ . +... . ...+|++|+...+ .+.
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~--~----------~~~~-----------------~-~~~~d~v~~r~~~-~~~ 60 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPF--G----------ERPK-----------------E-LEDVDVAIIRCVS-QSR 60 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEc--C----------CCcc-----------------c-cCCCCEEEEcCcc-hhh
Confidence 577899999999999988765321000 0 0000 0 1268999997421 233
Q ss_pred chHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeC
Q 002207 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257 (953)
Q Consensus 178 dg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~ 257 (953)
...++.+|+.+|+|+++ ++.++..+.||..++++|+++|||+|++..+.+.+ ++..+.. ..+||+||||.
T Consensus 61 ~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~----~~~~~~~-----~~~~P~vvKP~ 130 (280)
T TIGR02144 61 ALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDRE----AALKLAE-----ALGYPVVLKPV 130 (280)
T ss_pred HHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHH----HHHHHHH-----HcCCCEEEEEC
Confidence 45678999999999987 47999999999999999999999999998875432 2222222 36789999999
Q ss_pred CCCCceeEEEeCCHHHHHHHHHH--hHhcCCCCcEEEeccCCC-CeEEEEEEEEeCCCCccccEEecceEEEEeccCccc
Q 002207 258 RAGSSIGVTVAYGVIDSLKKAKG--IILEGIDDRVVVELFLEG-GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD 334 (953)
Q Consensus 258 ~~gsS~GV~~v~~~~el~~~a~~--~~~~~~~~~vlVEefI~G-g~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~ 334 (953)
.+++|.||.++++.+++.+.... .+....+..+|||+||+| ++|+++.+++ + .... .+. ..
T Consensus 131 ~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig----~--~~~~----~~~-r~----- 194 (280)
T TIGR02144 131 IGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIG----D--EAIA----AIY-RY----- 194 (280)
T ss_pred cCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEEC----C--EEEE----EEE-Ec-----
Confidence 99999999999999987654322 121123467999999974 4899999984 2 1111 010 00
Q ss_pred cccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCC
Q 002207 335 VREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414 (953)
Q Consensus 335 ~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG 414 (953)
. -+|......++ ...|..++++ +++.|.++++++|+ ++++|||++ +++|
T Consensus 195 ---~---~~~~~~~~~g~---~~~~~~~~~~----~~~~a~~~~~~lg~-~~~~vD~~~-----------------~~~g 243 (280)
T TIGR02144 195 ---S---NHWRTNTARGG---KAEPCPLDEE----VEELAVKAAEAVGG-GVVAIDIFE-----------------SKER 243 (280)
T ss_pred ---C---CchhhhhhcCC---ceeccCCCHH----HHHHHHHHHHHhCC-CeEEEEEEE-----------------cCCC
Confidence 0 11222222222 2356666665 57899999999997 699999876 5677
Q ss_pred cEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 415 ~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++||+|||++||++.. ..++|+++.+++-..+
T Consensus 244 ~~~v~EvN~~p~~~~~------~~~~g~~~~~~~~~~~ 275 (280)
T TIGR02144 244 GLLVNEVNHVPEFKNS------VRVTGVNVAGEILEYA 275 (280)
T ss_pred CEEEEEEeCCcchhhh------hHhhCCCHHHHHHHHH
Confidence 8999999999998752 3578999877765544
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=212.20 Aligned_cols=117 Identities=33% Similarity=0.526 Sum_probs=83.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+|||||.|+|||||+.||++|+++|++.+|+|++++|+++|.|+..+........................ .....
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISA-SLIEK 79 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEE-EETTE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhccccccccccc-ccccc
Confidence 69999999999999999999999999999999999999999999998754322111111111110000000000 00000
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECC
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs 195 (953)
......+|+|||++||.+||||+||++||.+||||+||
T Consensus 80 ~~~~~~~DvvFp~lHG~~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 80 NEQKLEVDVVFPVLHGPNGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp STTCTTCSEEEEECCSTTTSSSHHHHHHHHTT-EBSSS
T ss_pred ccccccCCEEEEeccCCCCcccHHHHHHHHcCCCCcCC
Confidence 00134799999999999999999999999999999997
|
3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B .... |
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=242.75 Aligned_cols=222 Identities=18% Similarity=0.248 Sum_probs=168.7
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--EeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v~~~~~~~~~ 709 (953)
++.+|+|+|.. |..+|++.++.+++.+|+||+|+++.++.+|+||..+|++ |+++|||||++.. +.+.
T Consensus 72 ~~~~d~i~p~~-~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~---l~~~GIpvp~~~~~~~~~~------ 141 (447)
T PRK05586 72 LTGAQAIHPGF-GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREI---MIKAGVPVVPGSEGEIENE------ 141 (447)
T ss_pred HcCCCEEEcCc-cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHH---HHHCCCCCCCCcccccCCH------
Confidence 36789999985 8999999999999999999999999999999999999999 9999999999842 3321
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.+++ +||+||||..+|+|.||.+|++.+||.. +++.+..... .. ..++.++||+|
T Consensus 142 --~e~~~~~~~i-gyPvvvKP~~gggg~Gv~~v~~~~el~~---a~~~~~~~~~-----~~--------~~~~~vivEe~ 202 (447)
T PRK05586 142 --EEALEIAKEI-GYPVMVKASAGGGGRGIRIVRSEEELIK---AFNTAKSEAK-----AA--------FGDDSMYIEKF 202 (447)
T ss_pred --HHHHHHHHHc-CCCEEEEECCCCCCCeeEEECCHHHHHH---HHHHHHHHHH-----Hh--------cCCCeEEEEec
Confidence 1233455678 6999999999999999999999999886 4443332100 00 01367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|+++.++++. |....+ +.. + ..+...+ .......|++.
T Consensus 203 i~g~------------------------~ei~v~v~~d~~G~~~~~-~~~------~-~~~~~~~--~~~~~~~p~~~-- 246 (447)
T PRK05586 203 IENP------------------------KHIEFQILGDNYGNVVHL-GER------D-CSLQRRN--QKVLEEAPSPV-- 246 (447)
T ss_pred CCCC------------------------eEEEEEEEECCCCCEEEE-ece------e-cceEecc--cceEEEcCCCC--
Confidence 9985 49999999864 333222 110 0 0011001 11233446542
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|.++|||+++. +|++||+||||+||.+
T Consensus 247 l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 247 MTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFMEMNTRIQVE 296 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEEEEECCCCCC
Confidence 7899999999999999999999999999999985 6899999999999766
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=241.75 Aligned_cols=228 Identities=16% Similarity=0.234 Sum_probs=170.1
Q ss_pred HHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeC
Q 002207 626 EWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRK 702 (953)
Q Consensus 626 ~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~ 702 (953)
.+++. .++.+|+|+|.. |..+|++.++..+|.+|+|++|+++.++.+|+||..++++ |+++|||+|++. .+.+
T Consensus 65 ~l~~~a~~~~id~I~pg~-g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~---l~~~gip~pp~~~~~~~~ 140 (449)
T TIGR00514 65 NIISAAEITGADAIHPGY-GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIET---MKKAGVPCVPGSDGLVED 140 (449)
T ss_pred HHHHHHHHhCCCEEEeCC-CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccCcCC
Confidence 44544 346799999974 7889999999999999999999999999999999999999 999999999975 2322
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
. +.+.++.+++ +||+||||..+++|.||.+|++.+||..+ ++.+..... . ....+
T Consensus 141 ~--------~e~~~~~~~i-g~PvvvKP~~g~gs~Gv~~v~~~~el~~~---~~~~~~~~~-----~--------~~~~~ 195 (449)
T TIGR00514 141 E--------EENVRIAKRI-GYPVIIKATAGGGGRGMRVVREPDELVKS---ISMTRAEAK-----A--------AFGND 195 (449)
T ss_pred H--------HHHHHHHHHh-CCCEEEEeCCCCCCCccEEECCHHHHHHH---HHHHHHHHH-----H--------hCCCC
Confidence 1 1234455678 69999999999999999999999999864 443322100 0 00146
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
.+|||+||+|. +|+++.++++. |....+ .. .+ ..+..++ ......
T Consensus 196 ~vlvEe~i~g~------------------------~e~~v~v~~d~~g~~~~~-~~------~~-~~~~~~~--~~~~~~ 241 (449)
T TIGR00514 196 GVYIEKYIENP------------------------RHVEIQVLADKYGNAIYL-GE------RD-CSIQRRH--QKLLEE 241 (449)
T ss_pred CEEEEECCCCC------------------------eEEEEEEEEcCCCCEEEE-ec------cc-cCceecc--cceEEE
Confidence 79999999985 49999999864 333221 10 00 0111111 111223
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 862 ~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.|++ .+++++.+++++.+.+++++||+.|++++||+++. +|++||+||||+++.+
T Consensus 242 ~p~~--~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 242 APSP--ALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFMEMNTRIQVE 296 (449)
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEEEEECCCCCC
Confidence 4554 37899999999999999999999999999999985 6889999999999765
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=238.36 Aligned_cols=245 Identities=18% Similarity=0.127 Sum_probs=178.3
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++...... -..+...|+..|+|++|+++.++++++||..+|++|+++|||||++..+.+.+. +.++.+
T Consensus 26 ~~id~vi~g~E~~l--~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~e----a~~~~~ 99 (379)
T PRK13790 26 QNVDWVVIGPEQPL--IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKD----ALTYIE 99 (379)
T ss_pred hCCCEEEECCcHHH--HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHHH----HHHHHH
Confidence 47999997664211 124567889999999999999999999999999999999999999988765432 223322
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~ 321 (953)
.++||+||||..+++|.||.+|+|.+|+.+....++....+..+|||+||+| +|+++.++.++ . ..+.+.
T Consensus 100 -----~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g--~--~~~~~~ 169 (379)
T PRK13790 100 -----NCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG-EEFSLMTFVNG--D--LAVPFD 169 (379)
T ss_pred -----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC-ceEEEEEEeeC--C--EEEecc
Confidence 3678999999999999999999999998877776653334568999999998 99999999642 1 111111
Q ss_pred ceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHH-HHHHHHHHHHhCC-----CCeeEeeeeec
Q 002207 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSI-REGASLLFQRLGL-----CDFARIDGWFL 394 (953)
Q Consensus 322 ~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i-~~~a~~~~~aLg~-----~G~arVDf~~~ 394 (953)
+ +. ++...+|+++.++..++ +...+|+ .+++++.+++ ++++.+++++|++ .|+.++||++
T Consensus 170 ~--~~---------~~~kr~~~~d~g~~tgg-~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~l- 236 (379)
T PRK13790 170 C--IA---------QDHKRAFDHDEGPNTGG-MGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAIL- 236 (379)
T ss_pred c--cc---------ccccccccCCCCCcCCC-CceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE-
Confidence 1 11 01345888888887655 5556776 4788876666 7888888888844 4677889876
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++| +||+|+|++||-..+.. +....|.+ +++.++..+...
T Consensus 237 ----------------t~~g-~~viEiN~R~G~pe~~~---~~~~~~~D---l~~~~~~~~~g~ 277 (379)
T PRK13790 237 ----------------TKDG-PKVIEFNARFGDPEAQV---LLSRMESD---LMQHIIDLDEGK 277 (379)
T ss_pred ----------------eCCC-eEEEEEEcccCCCccee---eecccCCC---HHHHHHHHHcCC
Confidence 5666 99999999998643322 11235664 555666666654
|
|
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=225.20 Aligned_cols=271 Identities=17% Similarity=0.129 Sum_probs=186.0
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+|++.- .+. |.+.+.++|++.|+++..+.++... +... + ..
T Consensus 1 ~~~~~~~~------~~~-~~~~l~~a~~~~g~~~~~~~~~~~~--~~~~----------~-------~~----------- 43 (277)
T TIGR00768 1 KLAILYDR------IRL-DEKMLKEAAEELGIDYKVVTPPAIP--LTFN----------E-------GP----------- 43 (277)
T ss_pred CEEEEEcC------CCH-HHHHHHHHHHHcCCceEEEEhHHcE--Eecc----------C-------CC-----------
Confidence 58888854 223 6889999999999999877643210 0000 0 00
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.....+|+||+.. ........+...|+..|+|++++ +.++.+++||..++++|+++|+|+|++..+.+.+ ++.+
T Consensus 44 ~~~~~~d~v~~r~-~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~----~~~~ 117 (277)
T TIGR00768 44 RELAELDVVIVRI-VSMFRGLAVARYLESLGVPVINS-SDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPE----EALK 117 (277)
T ss_pred ccCCCCCEEEEec-hhHhhHHHHHHHHHHCCCeeeCC-HHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHH----HHHH
Confidence 0012689999998 22223446888999999999875 7999999999999999999999999998886543 2333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-CCCCcEEEeccCCCC--eEEEEEEEEeCCCCcc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGG--SEFTAIVLDVGSGFDC 315 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-~~~~~vlVEefI~Gg--~E~tv~Vl~~~~g~~~ 315 (953)
++. ..+||+||||..+++|.||.++++.+++.......... .....+|||+||+|. +++++.+++ +
T Consensus 118 ~~~-----~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~----~-- 186 (277)
T TIGR00768 118 LIE-----EIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVG----D-- 186 (277)
T ss_pred HHH-----hcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEEC----C--
Confidence 332 36789999999999999999999998876544332111 112479999999852 577777773 2
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
+.+. ..... . .. +|..++..++ . ..|..+++ ++++.|.+++++||+ ++++|||++
T Consensus 187 ~~~~--~~~r~--~--------~~---~~~~n~~~g~-~--~~~~~l~~----~~~~~a~~~~~~l~~-~~~~vD~~~-- 241 (277)
T TIGR00768 187 EVIA--AIYRI--T--------SG---HWRTNLARGG-K--AEPCPLTE----EIEELAIKAAKALGL-DVVGIDLLE-- 241 (277)
T ss_pred EEEE--EEEEc--C--------CC---chhhhhhcCC-e--eeecCCCH----HHHHHHHHHHHHhCC-CeEEEEEEE--
Confidence 2221 11000 0 11 1223333232 1 23455654 468899999999999 799999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHH
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
+++|++||+|||++||++.. ...+|+++.+++-
T Consensus 242 ---------------~~~g~~~viEiN~~p~~~~~------~~~~g~~l~~~~~ 274 (277)
T TIGR00768 242 ---------------SEDRGLLVNEVNPNPEFKNS------VKTTGVNIAGKLL 274 (277)
T ss_pred ---------------cCCCCeEEEEEcCCcchhhh------HHHHCCCHHHHHH
Confidence 67889999999999997642 3567998876654
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=235.99 Aligned_cols=299 Identities=15% Similarity=0.144 Sum_probs=193.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCce-eeecccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNA-YAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++|++|.|+.+ +..+++++++.||+++.++.+.+... +.. .. ..+++...+.. .....+
T Consensus 3 k~~liv~~~~~---------~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~---~~---~~~~~~~~i~~-----~~~~~l 62 (416)
T PRK07206 3 KKVVIVDPFSS---------GKFLAPAFKKRGIEPIAVTSSCLLDPYYYA---SF---DTSDFIEVIIN-----GDIDDL 62 (416)
T ss_pred CeEEEEcCCch---------HHHHHHHHHHcCCeEEEEEcCCCCchhhhc---cc---CcccchhhhcC-----CCHHHH
Confidence 46777776533 77889999999999987765443110 000 00 00000000000 001111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCch--HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDG--GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg--~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+. ...++|.|++.. |.. ..+.+.+.+|+|+ |+++.++..+.||+.|++.|+++|||+|+++.+.+.+
T Consensus 63 ~~~~~~~~~d~vi~~~-----e~~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~--- 133 (416)
T PRK07206 63 VEFLRKLGPEAIIAGA-----ESGVELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQINTADWE--- 133 (416)
T ss_pred HHHHHHcCCCEEEECC-----CccHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---
Confidence 111 235799999954 332 3456777889885 7888899999999999999999999999999886543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-----CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-----GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-----~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..+.+.+++ .++|+||||..+++|.||.+|++.+|+.+...+++.. ..+..+||||||+| .|+++.++.
T Consensus 134 -e~~~~~~~~g~--~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~ 209 (416)
T PRK07206 134 -EAEAWLRENGL--IDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVS 209 (416)
T ss_pred -HHHHHHHhcCC--CCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEE
Confidence 24444433221 2349999999999999999999999987766654321 12368999999998 999999984
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceE----EEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA----YHTPPRFPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~----~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
. +++.++..... |..+...++... ...| .+.+..++|.+.+.+++++||++
T Consensus 210 ~----~G~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~p--~~~~~~~~i~~~~~~~~~alg~~ 264 (416)
T PRK07206 210 L----DGNHLVTEIVR-------------------YHKTSLNSGSTVYDYDEFLD--YSEPEYQELVDYTKQALDALGIK 264 (416)
T ss_pred E----CCEEEEEEeEE-------------------eeecccCCCCceecccccCC--ccHHHHHHHHHHHHHHHHHcCCc
Confidence 2 22222211110 100111111011 1123 35678899999999999999995
Q ss_pred -CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHH-HHHhCCCHHHHHHHHHHHHhhh
Q 002207 385 -DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ-ASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 385 -G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~-a~~~G~s~~~ll~~li~~a~~r 458 (953)
|..++||++ +++| ++++|||++||-+. .|.+ ..+.|+++.++ +++.++..
T Consensus 265 ~G~~h~E~~~-----------------~~~g-~~liEin~R~~G~~---~~~~~~~~~G~d~~~~---~~~~~lg~ 316 (416)
T PRK07206 265 NGPAHAEVML-----------------TADG-PRLIEIGARLDGGL---HPDVARLATGDSQLDA---TVESLADP 316 (416)
T ss_pred cCCceEEEEE-----------------cCCC-CEEEEECCccCCCC---ccchhhhhcCcCHHHH---HHHHHhCc
Confidence 999999986 5566 89999999998543 3333 34789986554 45555554
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=228.67 Aligned_cols=288 Identities=15% Similarity=0.121 Sum_probs=189.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcC--CCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~--g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
|||+|+.+|... +++++|++. ||+|+.++.++..... ... +..+..+.... ......
T Consensus 2 ~~vLv~g~~~~~----------~~~~~l~~~~~g~~vi~~d~~~~~~~~------~~~----d~~~~~p~~~~-~~~~~~ 60 (326)
T PRK12767 2 MNILVTSAGRRV----------QLVKALKKSLLKGRVIGADISELAPAL------YFA----DKFYVVPKVTD-PNYIDR 60 (326)
T ss_pred ceEEEecCCccH----------HHHHHHHHhccCCEEEEECCCCcchhh------Hhc----cCcEecCCCCC-hhHHHH
Confidence 699999886431 667889888 5988877654432111 000 00000110000 000111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
+.+. ...++|+++|...+.....+.....|+..|+++++++..+..++.||..++++|+++|+|+|+++.+.+.+.
T Consensus 61 l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~--- 137 (326)
T PRK12767 61 LLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLED--- 137 (326)
T ss_pred HHHHHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHH---
Confidence 1111 234799999987543322334557788889999999999999999999999999999999999988765332
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+.... .....+||+|+||..+++|.|+.++++.+|+.+...+ ...+|||+||.| +|+++.++.+. +
T Consensus 138 -~~~~~---~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~------~~~~lvqeyi~G-~e~~v~~~~~~---~ 203 (326)
T PRK12767 138 -FKAAL---AKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY------VPNLIIQEFIEG-QEYTVDVLCDL---N 203 (326)
T ss_pred -HHhhh---hcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh------CCCeEEEeccCC-ceEEEEEEEcC---C
Confidence 22210 0124689999999999999999999999998765543 248999999997 99999999642 2
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
+.++.....+.. . ...+........ + .+++++.+.+++++||+.|++++||++
T Consensus 204 G~~~~~~~~~~~----------------~----~~~g~~~~~~~~---~---~~~i~~~~~~i~~~lg~~G~~~vd~~~- 256 (326)
T PRK12767 204 GEVISIVPRKRI----------------E----VRAGETSKGVTV---K---DPELFKLAERLAEALGARGPLNIQCFV- 256 (326)
T ss_pred CCEEEEEEeeee----------------e----ecCCceeEEEEc---C---CHHHHHHHHHHHHhcCCeeeEEEEEEE-
Confidence 334332222110 0 001110111111 1 256789999999999999999999986
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++ |++|++||||+++-+ ++ +..++|+++.+++..++
T Consensus 257 ----------------~~-g~~~viEiNpR~~g~----~~-~~~~~G~n~~~~~~~~~ 292 (326)
T PRK12767 257 ----------------TD-GEPYLFEINPRFGGG----YP-LSYMAGANEPDWIIRNL 292 (326)
T ss_pred ----------------EC-CeEEEEEEeCCCCCc----ch-hhHhhCCCHHHHHHHHH
Confidence 44 779999999988733 12 33578999887765443
|
|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=234.41 Aligned_cols=245 Identities=18% Similarity=0.180 Sum_probs=176.2
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
++.+|.|++...... -..+...|+..|+|++|++..++++|+||..+|++ |+++|||||++..+.+.+
T Consensus 25 ~~~id~vi~g~E~~l--~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~---l~~~gIptp~~~~~~~~~------- 92 (379)
T PRK13790 25 QQNVDWVVIGPEQPL--IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKI---MEKYNIPTADYKEVERKK------- 92 (379)
T ss_pred HhCCCEEEECCcHHH--HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCEEEECCHH-------
Confidence 356788886442210 11345677888999999999999999999999999 999999999998876532
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+++.. +++.++.. .....+|||+||+
T Consensus 93 -ea~~~~~~~-g~PvVvKp~~~~~gkGV~iv~~~~el~~---a~~~~~~~-----------------~~~~~vlvEe~i~ 150 (379)
T PRK13790 93 -DALTYIENC-ELPVVVKKDGLAAGKGVIIADTIEAARS---AIEIMYGD-----------------EEEGTVVFETFLE 150 (379)
T ss_pred -HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-----------------CCCCeEEEEEccc
Confidence 133445678 6999999999999999999999888875 56655422 0135799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
|+ |+++.++.+++....+.+.. .....+|+++.+++.|.+..++|++. +++
T Consensus 151 G~-------------------------E~sv~~~~~g~~~~~~~~~~--~~~kr~~~~d~g~~tgg~~~~~p~~~--l~~ 201 (379)
T PRK13790 151 GE-------------------------EFSLMTFVNGDLAVPFDCIA--QDHKRAFDHDEGPNTGGMGAYCPVPH--ISD 201 (379)
T ss_pred Cc-------------------------eEEEEEEeeCCEEEeccccc--ccccccccCCCCCcCCCCceEeeCCC--CCH
Confidence 97 99999998643222121111 11235788888888777777788753 577
Q ss_pred HHHHHH-HHHHHHHHHHcCC-----cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHH
Q 002207 872 EALDKC-KQRIELIANALQL-----EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 945 (953)
Q Consensus 872 ~~~~~i-~~~a~~~~~aLg~-----~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li 945 (953)
++.+++ ++++++++++|++ .|+.++||+++. +| +||+|+|++||-.....+. ..+-.||++.++
T Consensus 202 ~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g-~~viEiN~R~G~pe~~~~~--------~~~~~Dl~~~~~ 271 (379)
T PRK13790 202 DVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG-PKVIEFNARFGDPEAQVLL--------SRMESDLMQHII 271 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-eEEEEEEcccCCCcceeee--------cccCCCHHHHHH
Confidence 776666 7888888888844 577889999984 44 9999999999874332111 122246777777
Q ss_pred HHHh
Q 002207 946 DLGS 949 (953)
Q Consensus 946 ~~a~ 949 (953)
+.+.
T Consensus 272 ~~~~ 275 (379)
T PRK13790 272 DLDE 275 (379)
T ss_pred HHHc
Confidence 6654
|
|
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=238.37 Aligned_cols=226 Identities=17% Similarity=0.241 Sum_probs=168.1
Q ss_pred HHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--EeCc
Q 002207 627 WIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RRKE 703 (953)
Q Consensus 627 ~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v~~~ 703 (953)
.++. .++.+|+|+|.. |..+|+..++.++|.+|+|++|+++.++.+|+||..||++ |+++|||+|++.. +.+.
T Consensus 68 l~~~~~~~~~D~i~pg~-g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~---l~~~gIp~pp~~~~~~~~~ 143 (445)
T PRK08462 68 IISAAEIFEADAIFPGY-GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEV---MKRAGVPVIPGSDGALKSY 143 (445)
T ss_pred HHHHHHHcCCCEEEECC-CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccccCCH
Confidence 3444 345789999986 7889999999999999999999999999999999999999 9999999999742 2221
Q ss_pred cccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHH-HHHhhCCCCCcccccccccCCCCCCC
Q 002207 704 DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 704 ~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
+.+.++.+++ +||+||||..+++|.||.+|++.+||..+.+... .+.... .++
T Consensus 144 --------~~~~~~~~~~-g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~-----------------~~~ 197 (445)
T PRK08462 144 --------EEAKKIAKEI-GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAF-----------------GDG 197 (445)
T ss_pred --------HHHHHHHHHc-CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhcc-----------------CCC
Confidence 1234455678 6999999999999999999999999986432221 111110 145
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
.++||+||+|. +|+++.++++. |....+ +... ..+.....|+ ...
T Consensus 198 ~vlvEe~i~g~------------------------~e~~v~v~~~~~g~~~~~-g~~~----~~~~~~~~~~-----~~~ 243 (445)
T PRK08462 198 TMYMEKFINNP------------------------RHIEVQILGDKHGNVIHV-GERD----CSLQRRHQKL-----IEE 243 (445)
T ss_pred cEEEeccCCCC------------------------eEEEEEEEECCCCCEEEE-Eecc----ccceecccce-----EEE
Confidence 79999999874 49999999764 332211 1100 0011101111 113
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 862 ~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.|+. .++++..+++++.+.+++++||+.|++++||++++ +|++||+|||++++-+
T Consensus 244 ~p~~--~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 244 SPAV--VLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYFMEMNTRLQVE 298 (445)
T ss_pred cCCC--CCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEEEEEECCcCcC
Confidence 4553 26888999999999999999999999999999985 5789999999999764
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=237.66 Aligned_cols=222 Identities=17% Similarity=0.263 Sum_probs=168.4
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
..+|.|+|. +|...|+..++..|+..|++++|+++.++.+|.||..+|++ ++++|||+||+....-.+ .+
T Consensus 73 ~~~daI~pg-~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~---l~~~GVpv~p~~~~~v~~------~~ 142 (499)
T PRK08654 73 AGADAIHPG-YGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKL---MKKAGVPVLPGTEEGIED------IE 142 (499)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHH---HHHcCcCCCCCcCcCCCC------HH
Confidence 457999996 68899999999999999999999999999999999999999 999999999986531111 12
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||+.+|+|+||.+|++.+||..+ ++.+.... +. . ..++.++||+||+|
T Consensus 143 e~~~~a~~i-gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a---~~~~~~~a------~~----~---f~~~~v~vE~~I~~ 205 (499)
T PRK08654 143 EAKEIAEEI-GYPVIIKASAGGGGIGMRVVYSEEELEDA---IESTQSIA------QS----A---FGDSTVFIEKYLEK 205 (499)
T ss_pred HHHHHHHHh-CCCEEEEeCCCCCCCeEEEeCCHHHHHHH---HHHHHHHH------HH----h---CCCCeEEEEeCCCC
Confidence 244556788 69999999999999999999999999864 44332110 00 0 01467999999997
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
. +|+++.++++. |....+. ..+. .+ ..+++ ......|++. +++
T Consensus 206 ~------------------------r~ieVqvl~d~~G~vv~l~-~rec----si---qrr~q--k~ie~~Pa~~--l~~ 249 (499)
T PRK08654 206 P------------------------RHIEIQILADKHGNVIHLG-DREC----SI---QRRHQ--KLIEEAPSPI--MTP 249 (499)
T ss_pred C------------------------cEEEEEEEEcCCCCEEEEe-eecc----cc---ccCcc--ceEEECCCCC--CCH
Confidence 5 49999999875 3332221 1110 01 11111 1223456653 789
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++.+++++.|.+++++||+.|.++|||+++ +|++||+||||+++.+
T Consensus 250 ~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yflEiNpRlqve 295 (499)
T PRK08654 250 ELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFLEMNTRLQVE 295 (499)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEEEEECCCCCC
Confidence 999999999999999999999999999996 5899999999999765
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=235.65 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=167.5
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
+..+|+|+|. +|...|+..++..|+..|++++|+++.++.+|.||..+|++ |+++|||+|++. .+.+.
T Consensus 75 ~~~~daI~pg-~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~---l~~~GIp~~p~~~~~v~~~------ 144 (467)
T PRK12833 75 QCGADAIHPG-YGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRT---ARRAGVPTVPGSDGVVASL------ 144 (467)
T ss_pred HhCCCEEEEC-CCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcCcCcCCH------
Confidence 3567999996 57888999889999999999999999999999999999999 999999999985 44321
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHH-HHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE-CLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~-a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
+.+.++.+++ +||+||||+.+|+|.||.+|++.+||.++.+.... +.... .++.++||+
T Consensus 145 --~e~~~~~~~i-gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~-----------------~~~~vlvEe 204 (467)
T PRK12833 145 --DAALEVAARI-GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAF-----------------GDGGVYLER 204 (467)
T ss_pred --HHHHHHHHHh-CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhc-----------------CCCcEEEEe
Confidence 2234456778 69999999999999999999999999864332211 11110 146799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||++. +|+++.+++++.....+.+.. ..+..+++ ......|++ .
T Consensus 205 fi~~~------------------------~ei~v~v~~dg~~~~~~~~~~--------~~~~r~~~--ki~e~~p~~--~ 248 (467)
T PRK12833 205 FIARA------------------------RHIEVQILGDGERVVHLFERE--------CSLQRRRQ--KILEEAPSP--S 248 (467)
T ss_pred cCCCC------------------------EEEEEEEEeCCCcEEEEEEee--------cccccCCc--cEEEECCCC--C
Confidence 99853 499999998764322221110 01111111 112234543 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|.++|||+++.++|++||+||||+++.+
T Consensus 249 l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~ 299 (467)
T PRK12833 249 LTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVE 299 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcc
Confidence 688999999999999999999999999999998546889999999999765
|
|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=235.88 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=166.3
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
++.+|+|+|.. |...|++.++.+|+.+|+||+|+++.++.+|+||..+|++ |+++|||+|++. .+.+.
T Consensus 72 ~~~id~I~p~~-~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~---l~~~gIp~pp~~~~~v~~~------ 141 (451)
T PRK08591 72 ITGADAIHPGY-GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKAT---MKKAGVPVVPGSDGPVDDE------ 141 (451)
T ss_pred HhCCCEEEECC-CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccccCCH------
Confidence 45689999975 7788999999999999999999999999999999999999 999999999974 34332
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++...+ +||+||||+.+++|.||.+|++.+||.. +++.+..... .. ...+.++||+|
T Consensus 142 --~~~~~~~~~~-g~PvvvKP~~g~gs~Gv~iv~~~~el~~---~~~~~~~~~~-----~~--------~~~~~vlvEe~ 202 (451)
T PRK08591 142 --EEALAIAKEI-GYPVIIKATAGGGGRGMRVVRTEAELEK---AFSMARAEAK-----AA--------FGNPGVYMEKY 202 (451)
T ss_pred --HHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHH---HHHHHHHHHH-----Hh--------cCCCCEEEEeC
Confidence 2234456678 6999999999999999999999999886 4444332100 00 01467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|+++.+++++. ....+. .. ...+.....+ .....|++ .
T Consensus 203 i~g~------------------------~e~~v~v~~d~~g~~~~~~-~~----~~~~~~~~~~-----~~~~~p~~--~ 246 (451)
T PRK08591 203 LENP------------------------RHIEIQVLADGHGNAIHLG-ER----DCSLQRRHQK-----VLEEAPSP--A 246 (451)
T ss_pred CCCC------------------------cEEEEEEEEcCCCCEEEEe-cc----cccceeccee-----EEEECCCC--C
Confidence 9974 489999988653 322111 00 0001010111 11233543 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||+++. +|++||+|||++++.+
T Consensus 247 l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~viEINpR~~~~ 296 (451)
T PRK08591 247 ITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFIEMNTRIQVE 296 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEEEEECCCCcc
Confidence 6889999999999999999999999999999985 6899999999999765
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=233.46 Aligned_cols=303 Identities=16% Similarity=0.139 Sum_probs=191.8
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
.|||+||.+|.. || .++.+|++.|++|+++....+.-.+.....-.. ....+++ .+..+
T Consensus 2 ~~kVLvlG~G~r-e~--------al~~~l~~~g~~v~~~~~~~Npg~~~~a~~~~~-~~~~d~e-----------~l~~~ 60 (435)
T PRK06395 2 TMKVMLVGSGGR-ED--------AIARAIKRSGAILFSVIGHENPSIKKLSKKYLF-YDEKDYD-----------LIEDF 60 (435)
T ss_pred ceEEEEECCcHH-HH--------HHHHHHHhCCCeEEEEECCCChhhhhcccceee-cCCCCHH-----------HHHHH
Confidence 379999987754 23 446778888988876633212111111100000 0000100 11112
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE-EecCCccchhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESE 235 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~-~~~~~~~~~~~ 235 (953)
.+ ..++|+|++...+... ..+...|+..|+|..|++..++.++.||..||++|+++|||||+++ .+.+.+ +
T Consensus 61 ~~--~~~id~Vi~~~d~~l~--~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~----e 132 (435)
T PRK06395 61 AL--KNNVDIVFVGPDPVLA--TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEK----D 132 (435)
T ss_pred HH--HhCCCEEEECCChHHH--HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChH----H
Confidence 22 3479999998754332 1344566788999999999999999999999999999999998655 443322 1
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC----CHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY----GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~----~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+..++. ..+||+||||..+.+|.||.+|+ +.+++...+.+.+ ..+..+||||||+| .|+++.++-++
T Consensus 133 ~~~~~~-----~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~~~~~viIEEfl~G-~E~Svd~~~dg- 203 (435)
T PRK06395 133 AARDYI-----TSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--DRDGVVLIEKKMTG-EEFSLQAFSDG- 203 (435)
T ss_pred HHHHHH-----hhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--CCCCcEEEEeecCC-ceEEEEEEEcC-
Confidence 222221 25789999999999999999994 3456565555543 23568999999998 99999999532
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEc-----CCCCCHHHHHHHHHHHHHHHHHhC----
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-----PPRFPIVVINSIREGASLLFQRLG---- 382 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~-----Pa~l~~~~~~~i~~~a~~~~~aLg---- 382 (953)
. ....+++.+. .+..|+.+.-...++ +..+. |+.+++++.+++++++.+++++|+
T Consensus 204 -~--~~~~l~~~~d------------~~r~~~~d~gp~tGg-mG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~ 267 (435)
T PRK06395 204 -K--HLSFMPIVQD------------YKRAYEGDHGPNTGG-MGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENN 267 (435)
T ss_pred -C--eEEEecccce------------eeecccCCCCCccCC-CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 2233333221 112333221111121 22222 334899999999999999999999
Q ss_pred -CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 383 -LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 383 -~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++|+..+++++ +++| +||+|+|+++|=..+ .++|.+ +. ++++.++..+..+
T Consensus 268 ~~~G~l~~~~~l-----------------t~~g-p~ViE~n~R~gdpe~~~il~~l----~~---d~~~~~~~~~~g~ 320 (435)
T PRK06395 268 PFKGIMYGQFMD-----------------TPNG-VKVIEINARFADPEGINVLYLL----KS---DFVETLHQIYSGN 320 (435)
T ss_pred ceEEEEEEEEEE-----------------eCCC-cEEEEEeCCCCCccHHhhhhhc----cc---CHHHHHHHHhcCC
Confidence 57777899876 5566 999999999995543 344433 44 5555555555553
|
|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=236.46 Aligned_cols=229 Identities=18% Similarity=0.254 Sum_probs=170.3
Q ss_pred HHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 626 EWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 626 ~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
..++.++ +.+|+|+|. +|..+|+..++.+++.+|+|++|+++.++.+|+||..+|++ |+++|||+|++....-.+
T Consensus 64 ~i~~~a~~~~~D~I~pg-~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~---l~~~GIp~pp~~~~~~~~ 139 (472)
T PRK07178 64 RLVNLAVETGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRA---MIKAGVPVTPGSEGNLAD 139 (472)
T ss_pred HHHHHHHHHCCCEEEeC-CCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCCcCcCCCC
Confidence 3344433 578999997 58899999999999999999999999999999999999999 999999999975421111
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH-HHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL-EECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al-~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
.+.+.++.+++ +||+||||+.+|+|.||.+|++.+||..+.+.. ..+.... .+..
T Consensus 140 ------~~e~~~~~~~i-gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~-----------------~~~~ 195 (472)
T PRK07178 140 ------LDEALAEAERI-GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAF-----------------GSAE 195 (472)
T ss_pred ------HHHHHHHHHHc-CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhc-----------------CCCC
Confidence 12233455788 699999999999999999999999998643322 2222111 1457
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
+++|+||++. +|+++.++++. |....+.+.. .....++ .......
T Consensus 196 v~iE~~i~~~------------------------~eiev~v~~d~~G~~v~~~er~--------~s~~~~~--~~~~e~~ 241 (472)
T PRK07178 196 VFLEKCIVNP------------------------KHIEVQILADSHGNVVHLFERD--------CSIQRRN--QKLIEIA 241 (472)
T ss_pred EEEEEcCCCC------------------------eEEEEEEEEECCCCEEEEEccc--------cceEecC--cceEEEC
Confidence 9999999875 59999999864 3322221110 0111001 1122345
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
|++ .+++++.+++++.+.+++++||+.|.++|||+++. +|++||+||||+++.+
T Consensus 242 P~~--~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 242 PSP--QLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFMEMNTRVQVE 295 (472)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEEEEeCCcCCC
Confidence 654 37899999999999999999999999999999985 6889999999998765
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=234.77 Aligned_cols=222 Identities=17% Similarity=0.239 Sum_probs=168.4
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEE-eCccccCCchh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR-RKEDLLKTPIV 711 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v-~~~~~~~~~~~ 711 (953)
..+|.|+|. .|..+|+..++..|+.+|++++|+++.++.+|+||..+|++ ++++|||+|++... ...+ .
T Consensus 72 ~~iDaI~pg-~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~---l~~~gIpvpp~~~~~~~~~------~ 141 (478)
T PRK08463 72 CGADAIHPG-YGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYL---MKKNGIPIVPGTEKLNSES------M 141 (478)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHH---HHHcCCCCCCCccccCCCC------H
Confidence 467999996 58889999999999999999999999999999999999999 89999999886543 2111 1
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHH-HHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
+.+.++.+++ +||+||||+.+|+|+||.+|++.+||..+.+... .+..+. .++.++||+||
T Consensus 142 ~~~~~~~~~i-gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~-----------------~~~~vlvEefI 203 (478)
T PRK08463 142 EEIKIFARKI-GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYF-----------------NNDEVFMEKYV 203 (478)
T ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc-----------------CCCcEEEEecC
Confidence 2234456778 6999999999999999999999999986433221 122211 15679999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
+|. +|+++.++++. +....+. .. + .+...++ .......|++ .+
T Consensus 204 ~~~------------------------~~iev~v~~d~~g~v~~~~------er-~-~s~~~~~--~~~ie~~P~~--~l 247 (478)
T PRK08463 204 VNP------------------------RHIEFQILGDNYGNIIHLC------ER-D-CSIQRRH--QKVIEIAPCP--SI 247 (478)
T ss_pred CCC------------------------eEEEEEEEEcCCCCEEEEe------cc-C-Ccccccc--CceEEECCCC--CC
Confidence 874 48999999875 3322211 10 0 0111111 1123456765 37
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++++.+++++.+.+++++||+.|++++||+++. +|++||+||||+++.+
T Consensus 248 ~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 248 SDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFMEMNTRIQVE 296 (478)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCC
Confidence 899999999999999999999999999999985 6899999999999866
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=228.08 Aligned_cols=239 Identities=18% Similarity=0.152 Sum_probs=162.4
Q ss_pred cCcCEEEEcCCCCCCCchH---HHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCC-CeEEecCCccchhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGG---IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV-PSFLLQGSEVNESELS 237 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~---iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp-~~~~~~~~~~~~~~~~ 237 (953)
.++|+|++. +|++. +...|+.+|+|+.|++..++.+++||..+|++|+++||||| .+..+.+.+ ++.
T Consensus 68 ~~id~Vi~g-----~E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~----ea~ 138 (486)
T PRK05784 68 VNPDLVVIG-----PEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVE----EAA 138 (486)
T ss_pred hCCCEEEEC-----CchHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHH----HHH
Confidence 479999983 46664 55778999999999999999999999999999999999997 566665432 233
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHH--------HH-HHHHHhHhc-----CCCCcEEEeccCCCCeEEE
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID--------SL-KKAKGIILE-----GIDDRVVVELFLEGGSEFT 303 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~e--------l~-~~a~~~~~~-----~~~~~vlVEefI~Gg~E~t 303 (953)
++++ ..+|+||||..+++|.||.+|++.++ +. +++.+++.. ..+..+||||||+| +|++
T Consensus 139 ~~~~------~~~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~S 211 (486)
T PRK05784 139 KFIE------YGGSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYT 211 (486)
T ss_pred HHHh------hcCCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEE
Confidence 3332 23699999999999999999999763 22 222232211 12468999999998 9999
Q ss_pred EEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC-----CCCCHHHHHHHHHHHHHHH
Q 002207 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP-----PRFPIVVINSIREGASLLF 378 (953)
Q Consensus 304 v~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P-----a~l~~~~~~~i~~~a~~~~ 378 (953)
|.++.++ . ..+.++..+ +...+++++.....++ +....| +.++++..+++.+++..++
T Consensus 212 V~al~dG--~--~~~~l~~~q------------d~k~~~~~d~gpntGg-mg~~~p~~~~~P~~~~~~~~~~~~~v~~~l 274 (486)
T PRK05784 212 LQVLTDG--E--TVIPLPLAQ------------DYPHAYEDGIGPETGG-MGSISGPGELLPFINEEEYEEAVEIVKRTI 274 (486)
T ss_pred EEEEECC--C--eEEEeeeeE------------eecceecCCCCCCCCC-CcccCCccccCCCCCHHHHHHHHHHHHHHH
Confidence 9999532 1 222232221 0234555544333333 222344 2367777777778888877
Q ss_pred HHhC----C--CCeeEeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHH
Q 002207 379 QRLG----L--CDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRT 450 (953)
Q Consensus 379 ~aLg----~--~G~arVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~ 450 (953)
++|+ + +|+.++++++ + ++| +++||+|.+.|=..+ .++| ..+- +|++.
T Consensus 275 ~al~~~~g~~~~G~l~~elml-----------------t~~~G-P~vIE~n~R~Gdpe~~~llp----~l~~---dl~~~ 329 (486)
T PRK05784 275 DAIYKETGERYVGVISGQMML-----------------TELWG-PTVIEYYSRFGDPEASNIIP----RIES---DFGEL 329 (486)
T ss_pred HHHHHhcCCCcEEEEEEEEEE-----------------ecCCC-cEEEEEecccCCchHHHHHH----hccC---CHHHH
Confidence 7765 3 4899999876 6 566 999999999994433 2333 2333 45555
Q ss_pred HHHHHhhh
Q 002207 451 IIGHACSR 458 (953)
Q Consensus 451 li~~a~~r 458 (953)
++..+..+
T Consensus 330 ~~~~~~g~ 337 (486)
T PRK05784 330 FELAATGK 337 (486)
T ss_pred HHHHHcCC
Confidence 56665555
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=222.04 Aligned_cols=355 Identities=18% Similarity=0.174 Sum_probs=251.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc---cccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA---QGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 154 (953)
.||+|--=| || |-.|.+|..+.|...+.||-..|--.++. ..+|-...+-... .....+.
T Consensus 8 ~KvLVANRg-----EI----AIRvFRAa~ELgi~TVAIys~ED~~S~HR--------~KADEsY~iG~~~~Pi~aYL~Id 70 (1149)
T COG1038 8 KKVLVANRG-----EI----AIRVFRAANELGIKTVAIYSEEDRLSLHR--------FKADESYLIGEGKGPVEAYLSID 70 (1149)
T ss_pred heeeeeccc-----hh----hHHHHHHHHhcCceEEEEeeccccchhhh--------ccccceeeecCCCCchHHhccHH
Confidence 467776422 44 77899999999999998875443211110 1111111110000 0111223
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
+++.. .....|+|-|.. |...|+..+..-|...||-|+|+.+....+..||..++....++|+|+.|..-- .-...
T Consensus 71 eII~iAk~~gaDaIhPGY-GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~--~~~~~ 147 (1149)
T COG1038 71 EIIRIAKRSGADAIHPGY-GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDG--PIETI 147 (1149)
T ss_pred HHHHHHHHcCCCeecCCc-ccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCC--CcccH
Confidence 33322 234789887765 566699999999999999999999999999999999999999999999886321 11123
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
+++.++.+ ..+||++||.+.||++.|+.+|.+.+++.+...++-+ .-.++.|.||+||++.+.++|.+++|
T Consensus 148 ee~~~fa~-----~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD 222 (1149)
T COG1038 148 EEALEFAE-----EYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGD 222 (1149)
T ss_pred HHHHHHHH-----hcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeec
Confidence 34444443 4789999999999999999999999876655443211 11367899999999889999999998
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
..||- +-+. +. =.+.+.. .+++....|+. |+++++++|.+.|.++++..|+.+.+.
T Consensus 223 ~~Gnv---vHLf----ER-------------DCSvQRR---hQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGT 279 (1149)
T COG1038 223 THGNV---VHLF----ER-------------DCSVQRR---HQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGT 279 (1149)
T ss_pred CCCCE---EEEe----ec-------------ccchhhc---cceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccce
Confidence 77652 1110 10 0112222 33466778987 999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC---CCCCCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF---PNLASY 465 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~---~~~~~~ 465 (953)
|+|.+ +.+|++|||||||+-..+.|-- -.-+|+ |++...|..|-.-- +.+-.+
T Consensus 280 vEFLv-----------------d~~~~fyFIEvNPRiQVEHTiT----E~vTgi---DIV~aQi~ia~G~~l~~~e~glp 335 (1149)
T COG1038 280 VEFLV-----------------DEDGKFYFIEVNPRIQVEHTIT----EEITGI---DIVKAQIHIAAGATLHTPELGLP 335 (1149)
T ss_pred EEEEE-----------------cCCCcEEEEEecCceeeEEeee----eeeech---hHHHHHHHHhccCccCCcccCCC
Confidence 99976 6789999999999888765421 123577 67888887764431 122222
Q ss_pred CC-----cceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NS-----VSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
.+ .+++|+||+..+||...|+|.++++..+--.||....
T Consensus 336 ~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVR 379 (1149)
T COG1038 336 QQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVR 379 (1149)
T ss_pred ccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEE
Confidence 22 2699999999999999999999999999888887764
|
|
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-22 Score=216.72 Aligned_cols=244 Identities=20% Similarity=0.249 Sum_probs=185.2
Q ss_pred hhcCCcEEEEecCCCCCCccHH----HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcccc
Q 002207 631 AKENQATVFIAVHGGIGEDGTL----QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLL 706 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~i----q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~ 706 (953)
.+|.+|.++|.+.|+.+.+-.+ .+.|+.+||+.+|++..+..+|.||..||++ |++.|+|+| .......
T Consensus 67 ~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~---m~eigi~~P-~~~~~~~--- 139 (400)
T COG0458 67 EKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEA---MREIGIPVP-SRIAHSV--- 139 (400)
T ss_pred HhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHH---HHHcCCCCC-ccccccH---
Confidence 4678999999999998886533 4788999999999999999999999999999 999999999 3333221
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 707 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 707 ~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
+..++....+ +||+||||+.+-+|.|..+++|.+||.++ ++..+... +-..+|+
T Consensus 140 -----~e~~~~~~~i-g~PvIVrP~~~lGG~G~~i~~n~eel~~~---~~~~l~~s-----------------~~~~vl~ 193 (400)
T COG0458 140 -----EEADEIADEI-GYPVIVKPSFGLGGSGGGIAYNEEELEEI---IEEGLRAS-----------------PVEEVLI 193 (400)
T ss_pred -----HHHhhhHhhc-CCCEEEecCcCCCCCceeEEeCHHHHHHH---HHhccccC-----------------cccccee
Confidence 2234556778 69999999999999999999999999863 44444331 2468999
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCC
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~ 866 (953)
|++|.|. .|++..++.+......+...++.... ...+.+.+....|++
T Consensus 194 eesi~G~------------------------ke~e~ev~rd~~~n~ivvc~men~dp-------~gvhtgdsi~vapaq- 241 (400)
T COG0458 194 EESIIGW------------------------KEFEYEVVRDGKDNCIVVCNMENLDP-------MGVHTGDSITVAPAQ- 241 (400)
T ss_pred eeeecCc------------------------eEEEEEEEEeCCCCEEEEEeCCcccc-------ccccccceeeecccc-
Confidence 9999984 79999999876543322222221111 123445566667776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHH
Q 002207 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLD 946 (953)
Q Consensus 867 ~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~ 946 (953)
++++...+.++..+.++.++||..|-++|||.+++++|++|++|+| |.++.+|-| |..+. .||..-+...+.
T Consensus 242 -tl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvN--pRvSrssaL---askAt--gypia~vaakla 313 (400)
T COG0458 242 -TLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEIN--PRVSRSSAL---ASKAT--GYPIAKVAAKLA 313 (400)
T ss_pred -ccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEec--CCcCcchhh---hhhcc--CChHHHHHHHhh
Confidence 4788889999999999999999999999999999766799999999 566677633 33333 499876665554
Q ss_pred H
Q 002207 947 L 947 (953)
Q Consensus 947 ~ 947 (953)
.
T Consensus 314 ~ 314 (400)
T COG0458 314 V 314 (400)
T ss_pred c
Confidence 3
|
|
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=229.49 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=163.4
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
++.+|+|++. +|...|++.++..|+.+|+|+.|++..++.+|.||..+|++ |+++|||+|++......+ .
T Consensus 72 ~~~id~I~p~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~------~ 141 (450)
T PRK06111 72 KTGAEAIHPG-YGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRA---MQAAGVPVVPGITTNLED------A 141 (450)
T ss_pred HhCCCEEEeC-CCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcCcCcCC------H
Confidence 4567999986 57788988899999999999999999999999999999999 999999999973221111 1
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.+.++.+.+ +||+||||..+++|.||.+|++.+||..+ ++....... .. ..+..++||+||+
T Consensus 142 ~e~~~~~~~~-~~P~VvKP~~g~gs~Gv~iv~~~~el~~a---~~~~~~~~~-----~~--------~~~~~~lvEe~i~ 204 (450)
T PRK06111 142 EEAIAIARQI-GYPVMLKASAGGGGIGMQLVETEQELTKA---FESNKKRAA-----NF--------FGNGEMYIEKYIE 204 (450)
T ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCceEEEECCHHHHHHH---HHHHHHHHH-----Hh--------cCCCcEEEEcccC
Confidence 1233445678 69999999999999999999999998864 443321100 00 0145799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
|. +|+++.++.+. +....+.+.. ..+.... ++ .....|++. ++
T Consensus 205 g~------------------------~e~~v~v~~~~~g~~~~~~~~~-----~~~~~~~-~~----~~~~~p~~~--~~ 248 (450)
T PRK06111 205 DP------------------------RHIEIQLLADTHGNTVYLWERE-----CSVQRRH-QK----VIEEAPSPF--LD 248 (450)
T ss_pred CC------------------------cEEEEEEEEcCCCCEEEEEeec-----ccccccc-cc----eEEecCCCC--CC
Confidence 85 38899888764 3322221110 0011100 00 111234432 57
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++.+++++++.+++++||+.|++++||+++. +|++||+|||++++.+
T Consensus 249 ~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~viEiN~R~~~~ 296 (450)
T PRK06111 249 EETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFLEMNTRLQVE 296 (450)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCc
Confidence 88999999999999999999999999999985 5779999999999754
|
|
| >PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-24 Score=201.15 Aligned_cols=117 Identities=35% Similarity=0.401 Sum_probs=78.4
Q ss_pred eEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhh
Q 002207 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571 (953)
Q Consensus 492 ~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 571 (953)
|||+|||||+|+||||||+||++|+++|+. ++|+|+||+|+++|.|+..... ..
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~g~~~~~~~~-------------------------~~ 54 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKDGRWYLGEGP-------------------------EE 54 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTTSCEEEEHHH-------------------------CS
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCCCCEEEcccc-------------------------hh
Confidence 689999999999999999999999999975 9999999999998766642111 00
Q ss_pred HHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccH
Q 002207 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~ 651 (953)
...... ..... .. ......... .... ......|+|||++||++||||+
T Consensus 55 ~~~~~~-~~~~~-----~~-------------~~~~~~~~~---~~~~----------~~~~~~DvvFp~lHG~~GEDG~ 102 (117)
T PF01820_consen 55 YLDNDD-DEEFS-----FK-------------PLPEISASL---IEKN----------EQKLEVDVVFPVLHGPNGEDGT 102 (117)
T ss_dssp HHHTTT-CCCHE-----ES-------------SSCCEEEEE---TTES----------TTCTTCSEEEEECCSTTTSSSH
T ss_pred hcccCc-hhhcc-----cc-------------ccccccccc---cccc----------cccccCCEEEEeccCCCCcccH
Confidence 000000 00000 00 000000000 0000 0134579999999999999999
Q ss_pred HHHHHHHcCCCEeCC
Q 002207 652 LQSLLEAEGVPYTGP 666 (953)
Q Consensus 652 iq~llE~~gIPy~G~ 666 (953)
||++||.+|||||||
T Consensus 103 iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 103 IQGLLELLGIPYVGC 117 (117)
T ss_dssp HHHHHHHTT-EBSSS
T ss_pred HHHHHHHcCCCCcCC
Confidence 999999999999997
|
3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B .... |
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=227.39 Aligned_cols=224 Identities=16% Similarity=0.162 Sum_probs=162.0
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+. .+...|+.+|+|++|++..++.+|+||..+|++ |+++|||||++..+.+.+
T Consensus 61 ~~id~vi~~-----~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (420)
T PRK00885 61 EGIDLTVVG-----PEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDF---MARYGIPTAAYETFTDAE----- 127 (420)
T ss_pred hCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHH---HHHcCCCCCCeEEeCCHH-----
Confidence 468999863 2333 345678889999999999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.++... .+. .....+|||||
T Consensus 128 ---~~~~~~~~~-~~P~VvKP~~~~gs~Gv~~v~~~~el~~---~~~~~~~~~---~~~----------~~~~~vlvEe~ 187 (420)
T PRK00885 128 ---EALAYLDEK-GAPIVVKADGLAAGKGVVVAMTLEEAKA---AVDDMLAGN---KFG----------DAGARVVIEEF 187 (420)
T ss_pred ---HHHHHHHHc-CCCEEEEeCCCCCCCcEEEeCCHHHHHH---HHHHHhhcc---ccc----------CCCCeEEEEEc
Confidence 233455678 6999999999999999999999998875 455554310 000 01467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |+++.++.+++. +...+..+. ...+++.+.+.+.+....+.|++. +
T Consensus 188 i~G~-------------------------E~sv~~~~~g~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (420)
T PRK00885 188 LDGE-------------------------EASFFAFVDGEN-VLPLPTAQD--HKRAGDGDTGPNTGGMGAYSPAPV--V 237 (420)
T ss_pred cCCc-------------------------EEEEEEEECCCc-eEeceeeEe--eeecccCCCCCCCCCCceeccCCC--C
Confidence 9997 999999986543 333333321 123444444444455555677753 5
Q ss_pred CHHHHHHHHH-HHHHHHH---HcCC--cceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 870 STEALDKCKQ-RIELIAN---ALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 870 ~~~~~~~i~~-~a~~~~~---aLg~--~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+++..+++++ +++++.+ ++|+ .|+.++|||++. + .+||+|+|+++|.+..
T Consensus 238 ~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~-~-g~~viEin~R~g~~~~ 293 (420)
T PRK00885 238 TEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK-D-GPKVIEFNARFGDPET 293 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC-C-CcEEEEEecccCCccH
Confidence 7777777664 5555555 4444 699999999984 4 4899999999997644
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=220.10 Aligned_cols=192 Identities=22% Similarity=0.222 Sum_probs=148.1
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
.-..|+..|+| ++++..+..+|+||..+|++ |+++|||+|++..+.+.+ .+.++.+.+ +||+||||.
T Consensus 75 ~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~--------~~~~~~~~~-g~P~vvKp~ 141 (352)
T TIGR01161 75 ALEKLEARGVK-LFPSPDALAIIQDRLTQKQF---LQKLGLPVPPFLVIKDEE--------ELDAALQEL-GFPVVLKAR 141 (352)
T ss_pred HHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCccEeCCHH--------HHHHHHHHc-CCCEEEEeC
Confidence 34567888987 56999999999999999999 999999999999887532 244556678 699999999
Q ss_pred CCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 732 RDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 732 ~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
.+| +|.|+.+|++.+|+.. +++... ...+|||+||++.
T Consensus 142 ~~g~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~lvEe~I~~~----------------- 180 (352)
T TIGR01161 142 TGGYDGRGQYRIRNEADLPQ---AAKELG---------------------DRECIVEEFVPFE----------------- 180 (352)
T ss_pred CCCCCCCCEEEECCHHHHHH---HHHhcC---------------------CCcEEEEecCCCC-----------------
Confidence 987 7999999999998875 343321 3479999999953
Q ss_pred hcCCCceeEEEEEEEcC-CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 811 WKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
+|+++.++.+ +|... +.|..+.....+++ ...+.|+. +++++.+++++++++++++||
T Consensus 181 -------~E~sv~~~~~~~G~~~-~~~~~~~~~~~g~~----------~~~~~p~~---~~~~~~~~~~~~a~~i~~~l~ 239 (352)
T TIGR01161 181 -------RELSVIVARSADGETA-FYPVVENIHQDGIL----------RYVVAPAA---VPDAIQARAEEIARRLMEELG 239 (352)
T ss_pred -------eEEEEEEEEcCCCCEE-EECCcccEEeCCEE----------EEEECCCC---CCHHHHHHHHHHHHHHHHHcC
Confidence 3999988765 34433 33433221111111 12356775 678889999999999999999
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+.|+.+||||++. +|++|||||||+||-+
T Consensus 240 ~~G~~~ve~~~~~-dg~~~v~EinpR~~~s 268 (352)
T TIGR01161 240 YVGVLAVEMFVLP-DGRLLINELAPRVHNS 268 (352)
T ss_pred ceeEEEEEEEEeC-CCcEEEEEecCCCCCc
Confidence 9999999999985 6889999999999843
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=220.16 Aligned_cols=216 Identities=24% Similarity=0.258 Sum_probs=157.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++....- .. ..+ ..|+.+|+|+ .++..+..+|+||..+++++ ++++|||+|+|..+.+.+
T Consensus 61 ~~id~v~~~~e~v-~~-~~~-~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~--~~~~gip~p~~~~~~~~~-------- 126 (380)
T TIGR01142 61 EKPDYIVPEIEAI-AT-DAL-FELEKEGYFV-VPNARATKLTMNREGIRRLA--AEELGLPTSRYMFADSLD-------- 126 (380)
T ss_pred hCCCEEEeccCcc-CH-HHH-HHHHhcCCee-CCCHHHHHHhhCHHHHHHHH--HHHCCCCCCCceEeCCHH--------
Confidence 4689998865332 11 234 3568899874 67899999999999999972 379999999999887532
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+||.. +++.+.... + ...+.+|||+||+|
T Consensus 127 ~~~~~~~~~-g~P~VvKP~~g~~s~gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~ivEe~i~~ 187 (380)
T TIGR01142 127 ELREAVEKI-GYPCVVKPVMSSSGKGQSVVRGPEDIEK---AWEYAQEGA------R---------GGAGRVIVEEFIDF 187 (380)
T ss_pred HHHHHHHHc-CCCEEEEECCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------CCCCCEEEEEecCC
Confidence 234455678 6999999999999999999999999886 444443210 0 01467999999997
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
. .|+++.++... |......+. . .+..+.+|. ..+.|++ +++
T Consensus 188 ~------------------------~E~sv~~~~~~~g~~~~~~~~-~------~~~~~~~~~----~~~~p~~---l~~ 229 (380)
T TIGR01142 188 D------------------------YEITLLTVRHVDGNTTFCAPI-G------HRQIDGDYH----ESWQPQE---MSE 229 (380)
T ss_pred C------------------------EEEEEEEEEcCCCCEEEecCc-c------eEEeCCeeE----EEECCCC---CCH
Confidence 4 49998887543 332222221 1 111122221 2356765 689
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++.+++++++++++++||+.|++++|||++ ++++||+|||++||.+..
T Consensus 230 ~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~--~~~~~viEinpR~~~~~~ 277 (380)
T TIGR01142 230 KALEEAQRIAKRITDALGGYGLFGVELFVK--GDEVIFSEVSPRPHDTGM 277 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CCcEEEEEeecCCCCCce
Confidence 999999999999999999999999999998 357999999999997644
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=241.72 Aligned_cols=300 Identities=15% Similarity=0.128 Sum_probs=200.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeee-cccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI-SSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
|.|++|-.+.+. +++.+++++++.||+|+.+.-++....+.. ........+..|.+ .+..+
T Consensus 3 ~~~~~ie~~~~~-------~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~-----------~l~~~ 64 (887)
T PRK02186 3 GIFVFIESNTTG-------TGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPD-----------RIHRF 64 (887)
T ss_pred cEEEEEcCCCCc-------cHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHH-----------HHHHH
Confidence 467777666554 477889999999999987643322100000 00000000000100 01112
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
+..+ ..+|.|++... ++ --....+.+.+|+| |+++.++.+++||..+|++|+++|||+|++..+.+.+. +
T Consensus 65 ~~~~-~~i~~V~~~se--~~-v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e----~ 134 (887)
T PRK02186 65 VSSL-DGVAGIMSSSE--YF-IEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAV----A 134 (887)
T ss_pred HHhc-CCCCEEEeCch--hh-HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHH----H
Confidence 2221 25788887642 11 12456788999999 78899999999999999999999999999998876432 3
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
.++.+ ..+||+||||.++++|.||.+|+|.+|+.+....+.. .....+|||+||+| +||+|.++.++ +.
T Consensus 135 ~~~~~-----~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~-~~~~~~lvEEfI~G-~E~sVe~i~~~----g~ 203 (887)
T PRK02186 135 LDALD-----GLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR-AGTRAALVQAYVEG-DEYSVETLTVA----RG 203 (887)
T ss_pred HHHHH-----hCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh-cCCCcEEEeecccC-CcEEEEEEEEC----Cc
Confidence 33332 3688999999999999999999999998766655433 23568999999998 99999998642 12
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC-CeeEeeeeecC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLC-DFARIDGWFLP 395 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~-G~arVDf~~~~ 395 (953)
..++...+.. ......|.. ..+..|+.++++..+++.+.+.+++++||++ |+.++||++
T Consensus 204 ~~i~~i~~k~---------------~~~~~~~ve---~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~-- 263 (887)
T PRK02186 204 HQVLGITRKH---------------LGPPPHFVE---IGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRV-- 263 (887)
T ss_pred EEEEEEEeee---------------cCCCCCeEE---eccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEE--
Confidence 2222222111 000011111 2235788999999999999999999999996 999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHH-HhCCCHHHHHHHHHHHHhhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS-KVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~-~~G~s~~~ll~~li~~a~~r 458 (953)
+++ .+||+|||+++|- +++|.+.. +.|+|+. +.+++.++..
T Consensus 264 ---------------t~~-g~~liEIn~R~~G---~~i~~li~~a~Gvd~~---~~~i~~~lG~ 305 (887)
T PRK02186 264 ---------------RGD-TVVIIEINPRLAG---GMIPVLLEEAFGVDLL---DHVIDLHLGV 305 (887)
T ss_pred ---------------ECC-CEEEEEECCCCCC---ccHHHHHHHHHCcCHH---HHHHHHhCCC
Confidence 444 4999999999872 45565444 6799864 4455656654
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=222.50 Aligned_cols=227 Identities=19% Similarity=0.187 Sum_probs=161.1
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+..+|+||+..+... -..+...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|+|..+.+.+
T Consensus 62 ~~~id~vi~~~e~~l--~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~------- 129 (423)
T TIGR00877 62 KKKIDLAVIGPEAPL--VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDF---MKRYGIPTAEYEVFTDPE------- 129 (423)
T ss_pred HhCCCEEEECCchHH--HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHH---HHHCCCCCCCeEEECCHH-------
Confidence 356889987543211 12467888999999999999999999999999999 999999999999886532
Q ss_pred hHHHHHHhhcCCCc-EEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 712 DIWHELTSKLQCKT-LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 712 ~~~~~~~~~lg~~P-lvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.++.+.+ +|| +||||..+++|.||.++++.+|+.. +++..+... + + .....+|||+||
T Consensus 130 -~~~~~~~~~-g~P~~VvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~~----~----g------~~~~~~lvEe~i 190 (423)
T TIGR00877 130 -EALSYIQEK-GAPAIVVKADGLAAGKGVIVAKTNEEAIK---AVEEILEQK----F----G------DAGERVVIEEFL 190 (423)
T ss_pred -HHHHHHHhc-CCCeEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHHh----c----C------CCCCeEEEEECc
Confidence 234455678 699 9999999999999999999988875 455544320 0 0 013579999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+|. |+++.++.+++.. ...+..+. ...+++++.+...+....+.|++. ++
T Consensus 191 ~G~-------------------------E~sv~~~~dg~~~-~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--~~ 240 (423)
T TIGR00877 191 DGE-------------------------EVSLLAFVDGKTV-IPMPPAQD--HKRALEGDKGPNTGGMGAYSPAPV--FT 240 (423)
T ss_pred cCc-------------------------eEEEEEEEcCCeE-Eeceeeee--eeecccCCCCCCCCCCceecCCCC--CC
Confidence 997 9999999765433 33333221 123445554444444455677652 56
Q ss_pred HHHHHHH-HHHHH---HHHHHcC--CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 871 TEALDKC-KQRIE---LIANALQ--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 871 ~~~~~~i-~~~a~---~~~~aLg--~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++..+++ ++.+. ++++++| +.|+.++|||++. +| +||+|||+++|-+..
T Consensus 241 ~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g-~~viEin~R~g~~~~ 295 (423)
T TIGR00877 241 EEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG-PKVLEFNCRFGDPET 295 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC-cEEEEEEccCCCccc
Confidence 6655443 33444 4444444 5799999999984 45 999999999996544
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=216.06 Aligned_cols=183 Identities=24% Similarity=0.265 Sum_probs=143.3
Q ss_pred CEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-CCcceE
Q 002207 662 PYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-CSTGVA 740 (953)
Q Consensus 662 Py~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g-sS~GV~ 740 (953)
..++++..+..+|+||..+|++ |+++|||+|+|..+.+.+ .+.++.+++ +||+||||+++| +|.|+.
T Consensus 86 ~~~~p~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~v~s~~--------~l~~~~~~~-g~P~vlKp~~~g~~g~Gv~ 153 (372)
T PRK06019 86 VPVPPGPDALAIAQDRLTEKQF---LDKLGIPVAPFAVVDSAE--------DLEAALADL-GLPAVLKTRRGGYDGKGQW 153 (372)
T ss_pred CeeCcCHHHHHHhcCHHHHHHH---HHHCCCCCCCceEeCCHH--------HHHHHHHHc-CCcEEEEeCCCCcCCCCeE
Confidence 3468999999999999999999 899999999999887532 244556678 699999999976 799999
Q ss_pred EeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEE
Q 002207 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEI 820 (953)
Q Consensus 741 ~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Ei 820 (953)
++++.+|++. +++... ...+|||+||++. +|+
T Consensus 154 ~v~~~~el~~---a~~~~~---------------------~~~~ivEe~I~~~------------------------~E~ 185 (372)
T PRK06019 154 VIRSAEDLEA---AWALLG---------------------SVPCILEEFVPFE------------------------REV 185 (372)
T ss_pred EECCHHHHHH---HHHhcC---------------------CCCEEEEecCCCC------------------------eEE
Confidence 9999999875 343320 4679999999963 499
Q ss_pred EEEEEcC-CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q 002207 821 TVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF 899 (953)
Q Consensus 821 tv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~ 899 (953)
++.++.+ +|... +.|..+.....++++ ..+.|+. +++++.+++++++.+++++||+.|+.+||||
T Consensus 186 sv~~~~~~~G~~~-~~p~~e~~~~~gi~~----------~~~~pa~---~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff 251 (372)
T PRK06019 186 SVIVARGRDGEVV-FYPLVENVHRNGILR----------TSIAPAR---ISAELQAQAEEIASRIAEELDYVGVLAVEFF 251 (372)
T ss_pred EEEEEECCCCCEE-EeCCcccEEeCCEEE----------EEECCCC---CCHHHHHHHHHHHHHHHHHcCccceeEEEEE
Confidence 9988875 44443 334333222222322 2356775 6889999999999999999999999999999
Q ss_pred EEcCCCcEEEEeeCCCCCCC
Q 002207 900 VNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 900 v~~~~g~~~viEINt~PGlt 919 (953)
++. +|++|||||||+|+-+
T Consensus 252 ~~~-dg~~~v~EinpR~~~s 270 (372)
T PRK06019 252 VTG-DGELLVNEIAPRPHNS 270 (372)
T ss_pred EcC-CCeEEEEEecCCccCc
Confidence 985 6889999999999854
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=236.24 Aligned_cols=231 Identities=18% Similarity=0.261 Sum_probs=171.5
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCc
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKE 703 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~ 703 (953)
+..+..++ ..+|+|+|. +|..+|+..++..|+..|++++|+++.++.+|.||..++++ ++++|||+|++......
T Consensus 64 d~Ii~iak~~~iDaI~PG-yGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~l---a~~~GVPvpp~t~~~v~ 139 (1143)
T TIGR01235 64 DEIIRVAKLNGVDAIHPG-YGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNL---AIKAGVPVVPGTDGPPE 139 (1143)
T ss_pred HHHHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccCcC
Confidence 44454433 468999996 68889999999999999999999999999999999999999 99999999997532111
Q ss_pred cccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 704 DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 704 ~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
+ .+.+.++.+++ +||+||||+.+|+|+|+.+|++.+||.++ ++.+..... .+. .++.
T Consensus 140 ~------~eea~~~ae~i-GyPvIVKP~~GGGGrG~riV~~~eEL~~a---~~~a~~ea~-----~~f--------g~~~ 196 (1143)
T TIGR01235 140 T------MEEVLDFAAAI-GYPVIIKASWGGGGRGMRVVRSEADVADA---FQRAKSEAK-----AAF--------GNDE 196 (1143)
T ss_pred C------HHHHHHHHHHc-CCCEEEEECCCCCCCccEEeCCHHHHHHH---HHHHHHHHH-----Hhc--------CCCc
Confidence 1 12244556788 69999999999999999999999999864 443322100 000 1467
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
++||+||+|. +|++|.++++.. ....+.+. + ......+ .......
T Consensus 197 vlIEefI~g~------------------------reIeVqVlgD~~G~vv~l~eR-------d-csvqrr~--qk~ie~a 242 (1143)
T TIGR01235 197 VYVEKLIERP------------------------RHIEVQLLGDKHGNVVHLFER-------D-CSVQRRH--QKVVEVA 242 (1143)
T ss_pred EEEEEcCCCC------------------------eEEEEEEEEeCCCCEEEEEec-------c-ccccccC--ceEEEEe
Confidence 9999999975 599999998753 32222110 0 0111001 1122345
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
|++ .+++++.++|++.|.+++++||+.|+++|||+++. +|++|||||||+++.+
T Consensus 243 Pa~--~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 243 PAP--YLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFIEVNPRIQVE 296 (1143)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEEEeecCCCcc
Confidence 654 36899999999999999999999999999999985 6899999999999765
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=207.42 Aligned_cols=214 Identities=20% Similarity=0.236 Sum_probs=152.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
.+|+||+.. ........+...|+..|+|++++ ..++.+|+||..++++ |+++|||+|++..+.+.+ .
T Consensus 48 ~~d~v~~r~-~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gi~~P~t~~~~~~~--------~ 114 (277)
T TIGR00768 48 ELDVVIVRI-VSMFRGLAVARYLESLGVPVINS-SDAILNAGDKFLTSQL---LAKAGLPQPRTGLAGSPE--------E 114 (277)
T ss_pred CCCEEEEec-hhHhhHHHHHHHHHHCCCeeeCC-HHHHHHHhhHHHHHHH---HHHCCCCCCCEEEeCCHH--------H
Confidence 369999988 22223447889999999999876 7899999999999999 899999999998876432 2
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+.++.+++ +||+||||..+++|.||.++++.+++..+.+.+.... .....+|||+||+|.
T Consensus 115 ~~~~~~~~-~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~-------------------~~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 115 ALKLIEEI-GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLN-------------------GPQNLFYVQEYIKKP 174 (277)
T ss_pred HHHHHHhc-CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhc-------------------ccCCcEEEEeeecCC
Confidence 34456678 6999999999999999999999998876433322110 012579999999975
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~ 873 (953)
+ | .++++.++++. . ...+......++ ...+..|.. ..|.+ ++
T Consensus 175 ~------------------~----~~~rv~v~~~~--~---~~~~~r~~~~~~---~~n~~~g~~--~~~~~---l~--- 216 (277)
T TIGR00768 175 G------------------G----RDIRVFVVGDE--V---IAAIYRITSGHW---RTNLARGGK--AEPCP---LT--- 216 (277)
T ss_pred C------------------C----ceEEEEEECCE--E---EEEEEEcCCCch---hhhhhcCCe--eeecC---CC---
Confidence 1 1 27777776542 2 111211112222 222222222 23433 33
Q ss_pred HHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 874 ~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+++++.+++++++||+ ++++|||+++. +|++||+|||++||++..
T Consensus 217 -~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~p~~~~~ 261 (277)
T TIGR00768 217 -EEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPNPEFKNS 261 (277)
T ss_pred -HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCCcchhhh
Confidence 3678899999999999 79999999985 689999999999998764
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=204.97 Aligned_cols=213 Identities=23% Similarity=0.269 Sum_probs=149.4
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
.+|+||+...+ .+....++.+||.+|+|++++ +.++.+|+||..++++ |+++|||+|++..+.+.+ .
T Consensus 47 ~~d~v~~r~~~-~~~~~~~~~~le~~g~~~~n~-~~~~~~~~dK~~~~~~---l~~~gip~P~t~~~~~~~--------~ 113 (280)
T TIGR02144 47 DVDVAIIRCVS-QSRALYSARLLEALGVPVINS-SHVIEACGDKIFTYLK---LAKAGVPTPRTYLAFDRE--------A 113 (280)
T ss_pred CCCEEEEcCcc-hhhHHHHHHHHHHCCCcEECc-HHHHHHHhhHHHHHHH---HHHCCcCCCCeEeeCCHH--------H
Confidence 46999986311 233457889999999999885 6899999999999998 899999999998875422 1
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+.++.+.+ +||+||||..+++|.||.++++.+++..+.+... .+.. ..+..+|+|+||+|.
T Consensus 114 ~~~~~~~~-~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~-~~~~-----------------~~~~~~ivQefI~~~ 174 (280)
T TIGR02144 114 ALKLAEAL-GYPVVLKPVIGSWGRLVALIRDKDELESLLEHKE-VLGG-----------------SQHKLFYIQEYINKP 174 (280)
T ss_pred HHHHHHHc-CCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHH-hhcC-----------------CcCCeEEEEcccCCC
Confidence 23345678 6999999999999999999999988875332211 1100 014579999999853
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~ 873 (953)
| +|+++.++++. .. ..+ ..... +|......|. ...|.+ +++
T Consensus 175 -------------------~----~d~~v~vig~~--~~---~~~-~r~~~---~~~~~~~~g~--~~~~~~---~~~-- 215 (280)
T TIGR02144 175 -------------------G----RDIRVFVIGDE--AI---AAI-YRYSN---HWRTNTARGG--KAEPCP---LDE-- 215 (280)
T ss_pred -------------------C----CceEEEEECCE--EE---EEE-EEcCC---chhhhhhcCC--ceeccC---CCH--
Confidence 1 38888888653 11 111 11111 1111111121 234443 343
Q ss_pred HHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 874 ~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++++.|++++++||+ ++++|||+++. +|++||+|||+.||++..
T Consensus 216 --~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~~p~~~~~ 259 (280)
T TIGR02144 216 --EVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNHVPEFKNS 259 (280)
T ss_pred --HHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeCCcchhhh
Confidence 567899999999997 59999999984 678999999999999864
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=234.13 Aligned_cols=224 Identities=16% Similarity=0.175 Sum_probs=168.8
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE-EEeCccccCCch
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRKEDLLKTPI 710 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~-~v~~~~~~~~~~ 710 (953)
+..+|.|+|.. |...|+..++..|+.+|++++|+++.++.+|.||..+|++ |+++|||+|++. .+.+.+
T Consensus 71 ~~~idaIiPG~-gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~l---l~~~GVPt~p~~~lv~s~d------ 140 (1201)
T TIGR02712 71 KTGAQAIHPGY-GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTAREL---AEAAGVPLLPGTGLLSSLD------ 140 (1201)
T ss_pred HHCCCEEEeCC-cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHH---HHHCCCCCCCceeecCCHH------
Confidence 34678888865 6788999999999999999999999999999999999999 899999998854 344321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.+..+++ +||+||||..+++|+||.+|++.+||.++.+.+....... ..+..++||+||
T Consensus 141 --ea~~~a~~i-gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~----------------f~~~~vlVEefI 201 (1201)
T TIGR02712 141 --EALEAAKEI-GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESF----------------FGDAGVFLERFV 201 (1201)
T ss_pred --HHHHHHHhc-CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHh----------------cCCCcEEEEecC
Confidence 233445678 6999999999999999999999999987544443322110 013569999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+|. +|+++.+++++...+..++..... +.... ......+|++. ++
T Consensus 202 ~g~------------------------~eveV~v~~Dg~g~vv~lg~rd~s----~qr~~-----~k~vee~Pap~--l~ 246 (1201)
T TIGR02712 202 ENA------------------------RHVEVQIFGDGKGKVVALGERDCS----LQRRN-----QKVVEETPAPN--LP 246 (1201)
T ss_pred CCC------------------------EEEEEEEEECCCCeEEEeeEEEee----eEecC-----ccEEEEcCCCC--CC
Confidence 964 499999998754332222221100 11111 11223466653 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++.+++++.+.+++++|++.|+++|||+++.++|++|||||||+++.+
T Consensus 247 ~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 247 PETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVE 295 (1201)
T ss_pred HHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcc
Confidence 9999999999999999999999999999998645889999999999765
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=207.91 Aligned_cols=214 Identities=23% Similarity=0.255 Sum_probs=154.4
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHH-HHCCCCccCeEEEeCccccCCchh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l-~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+.+|+|++...... . ..+. .++..|+|. .++..+..+|+||..+|++ + +++|||+|+|..+++.+
T Consensus 74 ~~id~vi~~~e~~~-~-~~~~-~l~~~g~~~-~~~~~a~~~~~dK~~~k~~---l~~~~gip~p~~~~~~s~~------- 139 (395)
T PRK09288 74 EKPDYIVPEIEAIA-T-DALV-ELEKEGFNV-VPTARATRLTMNREGIRRL---AAEELGLPTSPYRFADSLE------- 139 (395)
T ss_pred hCCCEEEEeeCcCC-H-HHHH-HHHhcCCee-CCCHHHHHHHhCHHHHHHH---HHHhCCCCCCCceEECCHH-------
Confidence 45788888653211 1 1233 456679885 4788999999999999998 6 57999999999887533
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++..++ +||+||||..+++|.||++|++.+|+.. +++.+.... + .....+||||||+
T Consensus 140 -~l~~~~~~~-g~P~VvKP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEefi~ 199 (395)
T PRK09288 140 -ELRAAVEEI-GYPCVVKPVMSSSGKGQSVVRSPEDIEK---AWEYAQEGG------R---------GGAGRVIVEEFID 199 (395)
T ss_pred -HHHHHHHhc-CCCEEEEeCCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------ccCCCEEEEEecC
Confidence 234455678 6999999999999999999999999886 455443220 0 0135799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+. .|+++.++.+++ ......+.......+ + ....+.|++ ++
T Consensus 200 ~~------------------------~E~sv~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~p~~---l~ 241 (395)
T PRK09288 200 FD------------------------YEITLLTVRAVDGGTHFCAPIGHRQEDG---D--------YRESWQPQP---MS 241 (395)
T ss_pred CC------------------------EEEEEEEEEcCCCCEEEecCcccEEECC---E--------EEEEECCCC---CC
Confidence 43 399999887655 333332221111000 1 112245665 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++.+++++++++++++||..|+.++|||++. +++||+|||++||-+.
T Consensus 242 ~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~--~~~~viEinpR~~~~~ 289 (395)
T PRK09288 242 PAALEEAQEIAKKVTDALGGRGLFGVELFVKG--DEVYFSEVSPRPHDTG 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC--CeEEEEEecCCCCCCc
Confidence 89999999999999999999999999999983 4799999999998653
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=196.83 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHCCCCCCCeEEe--cCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 205 DKYDASLEMSKQGFITVPSFLL--QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
||..++++++++|+|++|+... .+. +++.++.+ +++||++|||..+|++.|+.+|+|.+++.+......
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~----eea~~~a~-----~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~ 71 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSV----EEALEFAE-----EIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQ 71 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSH----HHHHHHHH-----HH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCH----HHHHHHHH-----hcCCceEEeecccccccccccccchhhhhhhhhhcc
Confidence 8999999999999999998765 332 23334433 268899999999999999999999999876665543
Q ss_pred hcC----CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEc
Q 002207 283 LEG----IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358 (953)
Q Consensus 283 ~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~ 358 (953)
... .+..++||+|+.|++|+++.+++|+.|+ .+. .++.+.. ... + .+++....
T Consensus 72 ~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn---~~~--~~~~e~~----------------~~~-h-s~dsi~~~ 128 (211)
T PF02786_consen 72 RESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGN---VVH--LGERECS----------------EQR-H-SQDSIEEA 128 (211)
T ss_dssp HHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSE---EEE--EEEEEEE----------------EEE-T-TEEEEEEE
T ss_pred ccCccccccceEEEeeehhhhhhhhhhhhhccccc---eee--eeeeccc----------------ccc-c-cccceeEe
Confidence 322 3678999999999899999999987654 222 2333211 011 1 22355667
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHH
Q 002207 359 PPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437 (953)
Q Consensus 359 Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a 437 (953)
|+. |++++.++|++.|.+++++||+.|.++|+|.+. ..+|++||+|+||+..-+ .|...
T Consensus 129 P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~----------------~~~~~~y~lEvNpR~~~~----~p~~e 188 (211)
T PF02786_consen 129 PAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVD----------------PDDGEFYFLEVNPRLQRE----HPVTE 188 (211)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE----------------TTTTEEEEEEEESS--TT----HHHHH
T ss_pred eccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEc----------------cCccceeeecccCCCCCc----chHHH
Confidence 875 999999999999999999999999999999873 137899999999876633 37777
Q ss_pred HHhCCCHHHHHHHHHHHHhhh
Q 002207 438 SKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 438 ~~~G~s~~~ll~~li~~a~~r 458 (953)
+.+|++ |+...++.|+..
T Consensus 189 ~~tg~d---lv~~~~~ia~G~ 206 (211)
T PF02786_consen 189 KVTGYD---LVRVQIRIALGE 206 (211)
T ss_dssp HHHT-----HHHHHHHHHTT-
T ss_pred HHHCCC---HHHHHHHHHCCC
Confidence 889996 566666666554
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=214.29 Aligned_cols=271 Identities=15% Similarity=0.095 Sum_probs=173.0
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeee-cc--cccccC-CCC-Ccccccccccc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI-SS--AQVYSN-TPA-DFDFKLESLAQ 148 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~-~~--~~~~~~-~~~-~~~~~~~~~~~ 148 (953)
|+.+|||+|+.|+... |.+++++|.+.|++|+.++.++. ++.. +. ...+.. .+. +.+.+++
T Consensus 1 ~~~~~~VLI~G~~~~~--------~l~iar~l~~~G~~Vi~~d~~~~--~~~~~s~~~d~~~~~p~p~~d~~~~~~---- 66 (389)
T PRK06849 1 MNTKKTVLITGARAPA--------ALELARLFHNAGHTVILADSLKY--PLSRFSRAVDGFYTIPSPRWDPDAYIQ---- 66 (389)
T ss_pred CCCCCEEEEeCCCcHH--------HHHHHHHHHHCCCEEEEEeCCch--HHHHHHHhhhheEEeCCCCCCHHHHHH----
Confidence 4567899999776653 88999999999999987765432 1100 00 000000 000 0000000
Q ss_pred ccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 149 GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 149 ~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
.+.++. ..+++|+|+|+.... .......+.|+. ++.+.+++..+...+.||..++++++++|||+|+++.+.+
T Consensus 67 ---~L~~i~--~~~~id~vIP~~e~~-~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~ 139 (389)
T PRK06849 67 ---ALLSIV--QRENIDLLIPTCEEV-FYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITD 139 (389)
T ss_pred ---HHHHHH--HHcCCCEEEECChHH-HhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCC
Confidence 011111 134799999998643 223333344443 4667789999999999999999999999999999999876
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.+. +..+.. +..+||+|+||..+++|.|+.++.+.+++. .. ....+..+||||||+| .|+.+..+.
T Consensus 140 ~~~----l~~~~~----~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~-~~----~~~~~~~~ivQe~I~G-~e~~~~~~~ 205 (389)
T PRK06849 140 PEA----IRNFMF----KTPHTPYVLKPIYSRFVRRVDLLPKEAALK-EL----PISKDNPWVMQEFIQG-KEYCSYSIV 205 (389)
T ss_pred HHH----HHHHhh----cCCCCcEEEEeCcccCCCeEEEecCHHHhc-cc----ccCCCCCeEEEEEecC-CeEEEEEEE
Confidence 432 222211 113789999999999999999998854422 11 1122346999999998 898777764
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCc-eEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ-VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
. +++.++... |...|..++. .....|. . ..+|++.+.+++++||++|.+
T Consensus 206 ~----~G~v~~~~~---------------------~~~~~~~~~~~~~~~~~~--~---~~~l~~~~~~~~~~l~~~G~~ 255 (389)
T PRK06849 206 R----SGELRAHSC---------------------YKPEYCAGSGAQIAFQPI--N---HPRIEEFVTHFVKELNYTGQI 255 (389)
T ss_pred E----CCEEEEEEE---------------------eeccccCCCCceeEeEEC--C---cHHHHHHHHHHHHhcCceeEE
Confidence 2 222222111 1112221111 1122222 1 246789999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
.+||++ +++|++|++||||+++
T Consensus 256 ~~df~~-----------------~~~g~~~~iEiNpR~~ 277 (389)
T PRK06849 256 SFDFIE-----------------TENGDAYPIECNPRTT 277 (389)
T ss_pred EEEEEE-----------------CCCCCEEEEEecCCCC
Confidence 999975 5689999999999887
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=210.66 Aligned_cols=249 Identities=14% Similarity=0.106 Sum_probs=167.3
Q ss_pred hcCCcEEEEecCCCCCCccHH---HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCcc-CeEEEeCccccC
Q 002207 632 KENQATVFIAVHGGIGEDGTL---QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI-NKDVRRKEDLLK 707 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~i---q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp-~~~~v~~~~~~~ 707 (953)
++.+|.|++ .+|++.+ ...|+.+|+|+.|++..++++|+||..+|++ |+++||||| .+..+++.+
T Consensus 67 ~~~id~Vi~-----g~E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~---l~~~gIpt~~~~~~~~~~~--- 135 (486)
T PRK05784 67 EVNPDLVVI-----GPEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWAREL---MWKYSIPGRLRYKVFYDVE--- 135 (486)
T ss_pred HhCCCEEEE-----CCchHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHH---HHHcCcCCCccceEeCCHH---
Confidence 356898887 2577754 4668899999999999999999999999999 899999997 566665422
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc-----HHHHH-HHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 708 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED-----LTVYV-KALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 708 ~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~e-----L~~~~-~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+ +.++.+.+ +|+||||..+++|.||.+|++.++ +.+.. +++++++... +.+. ...
T Consensus 136 ----e-a~~~~~~~--~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~--~~~g----------~~~ 196 (486)
T PRK05784 136 ----E-AAKFIEYG--GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS--AYYK----------DVE 196 (486)
T ss_pred ----H-HHHHHhhc--CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH--hhcc----------CCC
Confidence 1 22333444 599999999999999999999874 33322 4444443110 0000 124
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
..+||||||+|. |++|.++.+++..+ ..|..+ ....+++.+...+.|....+
T Consensus 197 ~~VlIEEfL~G~-------------------------E~SV~al~dG~~~~-~l~~~q--d~k~~~~~d~gpntGgmg~~ 248 (486)
T PRK05784 197 PKILVEEKVDGV-------------------------EYTLQVLTDGETVI-PLPLAQ--DYPHAYEDGIGPETGGMGSI 248 (486)
T ss_pred CeEEEEEccCCe-------------------------EEEEEEEECCCeEE-EeeeeE--eecceecCCCCCCCCCCccc
Confidence 689999999997 99999998654332 233322 12345555444444444445
Q ss_pred cC----CCCCCCCHHHHHHHHHHHHHHHHHcC----C--cceEEEEEEEE-cCCCcEEEEeeCCCCCCCCCchHHHHHHh
Q 002207 862 TP----PPASIMSTEALDKCKQRIELIANALQ----L--EGFSRIDAFVN-VDNGEVLIIEVNTVPGMTPSTVLIHQALS 930 (953)
Q Consensus 862 ~P----~~~~~l~~~~~~~i~~~a~~~~~aLg----~--~G~ariDf~v~-~~~g~~~viEINt~PGlt~~S~l~~~a~~ 930 (953)
.| .|. ++++..+++.++++.++++|+ + +|+.+++|+++ . +.++|||+|.+.|=.....+.+...
T Consensus 249 ~p~~~~~P~--~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~--~GP~vIE~n~R~Gdpe~~~llp~l~- 323 (486)
T PRK05784 249 SGPGELLPF--INEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTEL--WGPTVIEYYSRFGDPEASNIIPRIE- 323 (486)
T ss_pred CCccccCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecC--CCcEEEEEecccCCchHHHHHHhcc-
Confidence 66 442 467777777777777776664 3 49999999997 4 3499999999999443433333321
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 002207 931 EQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 931 ~~~~~yp~~l~~~li~~a~~ 950 (953)
.+|++.++..+..
T Consensus 324 -------~dl~~~~~~~~~g 336 (486)
T PRK05784 324 -------SDFGELFELAATG 336 (486)
T ss_pred -------CCHHHHHHHHHcC
Confidence 2666666666553
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=207.91 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=164.3
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE-EEeCccccCCch
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRKEDLLKTPI 710 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~-~v~~~~~~~~~~ 710 (953)
++.+|.|++...+.... .+...|+..|+|..|++..++.+|.||.+||++ |+++|||||+++ .+.+.+
T Consensus 63 ~~~id~Vi~~~d~~l~~--~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~---l~~~gIptp~~~~~~~~~~------ 131 (435)
T PRK06395 63 KNNVDIVFVGPDPVLAT--PLVNNLLKRGIKVASPTMEAAMIETSKMFMRYL---MERHNIPGNINFNACFSEK------ 131 (435)
T ss_pred HhCCCEEEECCChHHHH--HHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHH---HHHCCcCCCcccceeCChH------
Confidence 35689999875443322 334456678999999999999999999999999 899999998554 443321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+ ......++ +||+||||..+.+|.||.++++. ++++++..+....+. ....+|||||
T Consensus 132 -e-~~~~~~~~-~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~-------------------~~~~viIEEf 189 (435)
T PRK06395 132 -D-AARDYITS-MKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILD-------------------RDGVVLIEKK 189 (435)
T ss_pred -H-HHHHHHhh-CCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhC-------------------CCCcEEEEee
Confidence 1 12223456 69999999999999999999643 344443233322211 1467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc----CCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT----PPP 865 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~----P~~ 865 (953)
|+|. |+++.++.+++. +..+|..+. ....++-+.-.+.|....+. |.+
T Consensus 190 l~G~-------------------------E~Svd~~~dg~~-~~~l~~~~d--~~r~~~~d~gp~tGgmG~~s~~~~~~p 241 (435)
T PRK06395 190 MTGE-------------------------EFSLQAFSDGKH-LSFMPIVQD--YKRAYEGDHGPNTGGMGSISDRDFSLP 241 (435)
T ss_pred cCCc-------------------------eEEEEEEEcCCe-EEEecccce--eeecccCCCCCccCCCccccCCCCCCC
Confidence 9997 999999986544 333343321 11122222122223223333 333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-----CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 866 ASIMSTEALDKCKQRIELIANALQ-----LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 866 ~~~l~~~~~~~i~~~a~~~~~aLg-----~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
.++++..+++++.+++++++|+ .+|+..++|+++. +.+||||+|+++|=...-.+-+ +.+.||
T Consensus 242 --~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~--~gp~ViE~n~R~gdpe~~~il~--------~l~~d~ 309 (435)
T PRK06395 242 --FLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP--NGVKVIEINARFADPEGINVLY--------LLKSDF 309 (435)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC--CCcEEEEEeCCCCCccHHhhhh--------hcccCH
Confidence 2789999999999999999999 5788889999983 4599999999999553322222 123466
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
++.++..+.
T Consensus 310 ~~~~~~~~~ 318 (435)
T PRK06395 310 VETLHQIYS 318 (435)
T ss_pred HHHHHHHhc
Confidence 666665554
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=224.94 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=177.6
Q ss_pred HHHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--Ee
Q 002207 625 NEWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RR 701 (953)
Q Consensus 625 ~~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v~ 701 (953)
+..++.+ +..+|.|+|. .|...|+..+...++.+|++++|+++.+..+|.||..++++ ++++|||+|++.. +.
T Consensus 68 d~Ii~iAk~~~iDaI~Pg-yGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~---l~~~GVPv~P~~~~~v~ 143 (1146)
T PRK12999 68 DEIIRVAKQAGVDAIHPG-YGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNA---AIKAGVPVIPGSEGPID 143 (1146)
T ss_pred HHHHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccCCC
Confidence 3444443 3467889885 47788988889999999999999999999999999999999 9999999988764 33
Q ss_pred CccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+. +.+.++.+++ +||+||||+.+|+|.||.+|++.+||.++ ++.+..... .+. .+
T Consensus 144 s~--------eea~~~a~~i-GyPvVVKP~~GgGGrGv~vV~~~eEL~~a---~~~a~~ea~-----~~f--------g~ 198 (1146)
T PRK12999 144 DI--------EEALEFAEEI-GYPIMLKASAGGGGRGMRIVRSEEELEEA---FERAKREAK-----AAF--------GN 198 (1146)
T ss_pred CH--------HHHHHHHHHh-CCCEEEEECCCCCCCCeEEeCCHHHHHHH---HHHHHHHHH-----hhc--------CC
Confidence 21 2244556788 69999999999999999999999998863 444332100 000 14
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCcee
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~ 860 (953)
+.++||+||+|. +|+++.++++. |....+... . .+....+ .....
T Consensus 199 ~~vlVEefI~g~------------------------~~ieVqvl~D~~G~vv~l~er-----d---csvqrr~--qk~ie 244 (1146)
T PRK12999 199 DEVYLEKYVENP------------------------RHIEVQILGDKHGNVVHLYER-----D---CSVQRRH--QKVVE 244 (1146)
T ss_pred CcEEEecCCCCC------------------------eEEEEEEEEECCCCEEEEEcc-----c---cceeecC--ccEEE
Confidence 679999999985 48999988864 332222110 0 0000001 11122
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 861 ~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
..|+. .+++++.+++++.+.++++++|+.|.+++||+++. +|++||+||||+++.+.. +..++. . .++
T Consensus 245 ~aP~~--~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~yfIEINpRlqveh~--vte~~t-----G--vDl 312 (1146)
T PRK12999 245 IAPAP--GLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNFYFIEVNPRIQVEHT--VTEEVT-----G--IDI 312 (1146)
T ss_pred EcCCC--CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCEEEEEEECCCCCcch--HHHHHh-----C--cCH
Confidence 45553 37899999999999999999999999999999985 578999999998875421 222221 1 256
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
+...|++|+
T Consensus 313 v~~~iriA~ 321 (1146)
T PRK12999 313 VQSQILIAE 321 (1146)
T ss_pred HHHHHHHHC
Confidence 666666654
|
|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=206.89 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=154.8
Q ss_pred hcCCcEEEEecCCCCCCcc--HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDG--TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg--~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+..+|.|++.. |.. ..+.+.+.+|+|+ |+++.++..|.||..|+++ |+++|||+|++..+.+.+
T Consensus 68 ~~~~d~vi~~~-----e~~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~---l~~~gi~~p~~~~~~~~~----- 133 (416)
T PRK07206 68 KLGPEAIIAGA-----ESGVELADRLAEILTPQY-SNDPALSSARRNKAEMINA---LAEAGLPAARQINTADWE----- 133 (416)
T ss_pred HcCCCEEEECC-----CccHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHH---HHHcCCCcccEEecCCHH-----
Confidence 45689988842 332 4466778899985 7778888999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCC---cEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 710 IVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~---PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
.+.++.+.+ +| |+||||..+++|.||.+|++.+||.. +++++.... +.+. .....+||
T Consensus 134 ---e~~~~~~~~-g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~---~~~~~~~~~--~~~~----------~~~~~~lv 194 (416)
T PRK07206 134 ---EAEAWLREN-GLIDRPVVIKPLESAGSDGVFICPAKGDWKH---AFNAILGKA--NKLG----------LVNETVLV 194 (416)
T ss_pred ---HHHHHHHhc-CCCCCCEEEeCCCCCCCCCEEEeCCHHHHHH---HHHHHHhcc--ccCC----------CCCCeEEE
Confidence 234455666 57 99999999999999999999999875 455543220 0000 11468999
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCc----eeEc
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG----INLT 862 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~----~~~~ 862 (953)
||||+|. |+++.++..+|..... ........ . ...+.. ....
T Consensus 195 Ee~i~G~-------------------------E~sv~~~~~~G~~~~~-~~~~~~~~-~-------~~~~~~~~~~~~~~ 240 (416)
T PRK07206 195 QEYLIGT-------------------------EYVVNFVSLDGNHLVT-EIVRYHKT-S-------LNSGSTVYDYDEFL 240 (416)
T ss_pred EEccccE-------------------------EEEEEEEEECCEEEEE-EeEEeeec-c-------cCCCCceecccccC
Confidence 9999997 8888888755553221 11111000 0 001111 1122
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHH
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~-G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~ 926 (953)
|. +.+..+++.+.+.+++++||+. |++++||+++. + .++++|||++||-+....+.+
T Consensus 241 p~-----~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~-g~~liEin~R~~G~~~~~~~~ 298 (416)
T PRK07206 241 DY-----SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-D-GPRLIEIGARLDGGLHPDVAR 298 (416)
T ss_pred Cc-----cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-C-CCEEEEECCccCCCCccchhh
Confidence 32 4667889999999999999995 99999999984 3 489999999998665443333
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=198.25 Aligned_cols=354 Identities=19% Similarity=0.203 Sum_probs=247.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc-c--ccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES-L--AQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~ 154 (953)
.||.|---| || +-.|.+++-+.+...+.||-..+--..+ .-.+|-...+-. + ......+.
T Consensus 34 ~kvlVANRg-----EI----aIRvFRa~tEL~~~tvAiYseqD~~sMH--------RqKADEaY~iGk~l~PV~AYL~id 96 (1176)
T KOG0369|consen 34 NKVLVANRG-----EI----AIRVFRAATELSMRTVAIYSEQDRLSMH--------RQKADEAYLIGKGLPPVGAYLAID 96 (1176)
T ss_pred ceeEEecCC-----cc----hhHHHHHHhhhcceEEEEEeccchhhhh--------hhccccceecccCCCchhhhhhHH
Confidence 477776533 34 6678999999999888887544311100 001111111100 0 01111223
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
++++. .+.++|+|-|.. |...|+..+...+..+||.|+|++++......||..++.+.-++|+|+.|..--. -...
T Consensus 97 eii~iak~~~vdavHPGY-GFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgP--itt~ 173 (1176)
T KOG0369|consen 97 EIISIAKKHNVDAVHPGY-GFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGP--ITTV 173 (1176)
T ss_pred HHHHHHHHcCCCeecCCc-cccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCC--cccH
Confidence 33332 345789887765 5566888999999999999999999999999999999999999999998863211 1112
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
.+..++.+ +.++|+|+|.+.||++.|+.+|++.+++.+...+..+ .-.+..++||+||+-.+.++|.++++
T Consensus 174 ~EA~eF~k-----~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD 248 (1176)
T KOG0369|consen 174 EEALEFVK-----EYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGD 248 (1176)
T ss_pred HHHHHHHH-----hcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecc
Confidence 33444443 3677999999999999999999988776544443322 12367899999998779999999987
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
..||- +-+. + .-.+.+..+ +++..+.|+. +|++++++|-.-|.++++..|++..+.
T Consensus 249 ~~GNv---vHLy----E-------------RDCSvQRRH---QKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGT 305 (1176)
T KOG0369|consen 249 KHGNV---VHLY----E-------------RDCSVQRRH---QKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGT 305 (1176)
T ss_pred cCCCE---EEEe----e-------------cccchhhhh---cceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCc
Confidence 76652 1110 0 011122222 3466778886 999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh-CCCCCCCCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR-FPNLASYNS 467 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r-~~~~~~~~~ 467 (953)
++|.+ |..|+.||||||++-..+.+- .-+-+|+ +|+...|+.|-.+ .+.+-.-.+
T Consensus 306 vEFLv-----------------D~~g~hYFIEvN~RlQVEHTv----TEEITgv---DlV~aQi~vAeG~tLp~lgl~Qd 361 (1176)
T KOG0369|consen 306 VEFLV-----------------DQKGRHYFIEVNPRLQVEHTV----TEEITGV---DLVQAQIHVAEGASLPDLGLTQD 361 (1176)
T ss_pred eEEEE-----------------ccCCCEEEEEecCceeeeeee----eeeeccc---hhhhhhhhhhcCCCccccccccc
Confidence 99976 678999999999988776542 1123466 6888888888765 233321111
Q ss_pred ----cceecccccccCCCccccccCCCceEEEEecCCCcc
Q 002207 468 ----VSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTS 503 (953)
Q Consensus 468 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~ 503 (953)
.+.+|+||...+||...|++.++++.|+--.||...
T Consensus 362 kI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGi 401 (1176)
T KOG0369|consen 362 KITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGI 401 (1176)
T ss_pred ceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceE
Confidence 368999999999999999999999999887777764
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=198.86 Aligned_cols=202 Identities=25% Similarity=0.266 Sum_probs=148.4
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+..+|++++...+...-.......|+..|+++++++..+..++.||..|+++ |+++|||+|++..+.+.+
T Consensus 67 ~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~------- 136 (326)
T PRK12767 67 KEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEF---LKENGIPTPKSYLPESLE------- 136 (326)
T ss_pred HhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHH---HHHcCCCCCCEEcccCHH-------
Confidence 3568999986533222223345667788999999999999999999999999 999999999998775432
Q ss_pred hHHHH--HHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 712 DIWHE--LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 712 ~~~~~--~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.+ ....+ +||+|+||..+++|.||.++++.+++.. +++. ...+|||+|
T Consensus 137 -~~~~~~~~~~~-~~P~viKP~~g~~s~gv~~v~~~~el~~---~~~~-----------------------~~~~lvqey 188 (326)
T PRK12767 137 -DFKAALAKGEL-QFPLFVKPRDGSASIGVFKVNDKEELEF---LLEY-----------------------VPNLIIQEF 188 (326)
T ss_pred -HHHhhhhcccC-CCCEEEEeCCCCCccCeEEeCCHHHHHH---HHHh-----------------------CCCeEEEec
Confidence 1222 33567 6999999999999999999999888775 3322 247999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcC-CCCceeeCceEEEecCCccccccccccCCCce-eEcCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGI-NLTPPPAS 867 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~-~~~P~~~~ 867 (953)
|+|+ |+++.++.+ +|..+.......+. ..+|... ..+.
T Consensus 189 i~G~-------------------------e~~v~~~~~~~G~~~~~~~~~~~~-----------~~~g~~~~~~~~---- 228 (326)
T PRK12767 189 IEGQ-------------------------EYTVDVLCDLNGEVISIVPRKRIE-----------VRAGETSKGVTV---- 228 (326)
T ss_pred cCCc-------------------------eEEEEEEEcCCCCEEEEEEeeeee-----------ecCCceeEEEEc----
Confidence 9997 999998887 56544332221110 1112111 1111
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGl 918 (953)
. .+++++.+.+++++||+.|++++||+++ +|++|++|||++++-
T Consensus 229 --~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~viEiNpR~~g 272 (326)
T PRK12767 229 --K---DPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLFEINPRFGG 272 (326)
T ss_pred --C---CHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEEEEeCCCCC
Confidence 1 1468899999999999999999999998 388999999987764
|
|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=201.39 Aligned_cols=242 Identities=19% Similarity=0.255 Sum_probs=177.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
..|.+++.. |...||..++.+++..|+-+.||++.+++.+.||..++++ ++++|||++|+.-- +.. + .+.
T Consensus 74 gadai~pGy-gflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~---~~~aGVP~vpgs~~----~~~-~-~ee 143 (449)
T COG0439 74 GADAIHPGY-GFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRL---MAKAGVPVVPGSDG----AVA-D-NEE 143 (449)
T ss_pred CCceEcccc-hhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHH---HHHcCCCcCCCCCC----CcC-C-HHH
Confidence 457777776 4777999999999999999999999999999999999999 99999999998611 100 1 123
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
..++.+++ +|||+|||+.+|+|+||.+|++.+||.+....+...... +.+ ++.+++|+||++.
T Consensus 144 ~~~~a~~i-GyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~--------~fg--------~~~v~iEk~i~~~ 206 (449)
T COG0439 144 ALAIAEEI-GYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEA--------AFG--------NPRVYLEKFIEGP 206 (449)
T ss_pred HHHHHHHc-CCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHH--------hcC--------CCcEEeeeeccCC
Confidence 45567788 599999999999999999999999998743333322211 001 4569999999997
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCC-ccccccccccCCCceeEcCCCCCCCCHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~-~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
+.+.+.|+++...... .....+ .+.. .+ +......|.+ .++++
T Consensus 207 ------------------------rhievqv~gD~~g~~i-----~l~eRdcsiqr---r~--qkvieeapsp--~~~~e 250 (449)
T COG0439 207 ------------------------RHIEVQVLGDGHGNVI-----HLGERDCSIQR---RH--QKVIEEAPSP--LLTEE 250 (449)
T ss_pred ------------------------ceEEEEEEEcCcccEE-----EEEeccCCCcC---Cc--cceeeecCCC--CCCHH
Confidence 5888999998643221 111111 1111 11 1223345655 47899
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC-CCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG-MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG-lt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
..+++-+.+.++++.+|.+|.+.++|.++. +|++||+|+||+=+ -.+.+ . ..+..|+++..|..|.
T Consensus 251 ~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfiEmN~Rlqveh~vt---e-------~vtGiDlv~~qi~ia~ 317 (449)
T COG0439 251 LREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFIEMNTRLQVEHPVT---E-------MVTGIDLVKEQIRIAA 317 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEEEEecccccCccce---e-------hhhhhhHHHHHHHHHc
Confidence 999999999999999999999999999985 68999999998433 22221 1 1344688888888775
|
|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=183.30 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=115.9
Q ss_pred HhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh
Q 002207 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281 (953)
Q Consensus 202 i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~ 281 (953)
+|+||..++++++++|||+|++..+.+.+ ++.++... .++|+||||..+++|.||.++++.+++.+...++
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~----~~~~~~~~-----~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~ 71 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE----ELRAFAED-----LGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEI 71 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH----HHHHHHHH-----SSSSEEEEESS-STTTT-EEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH----HHHHHHHH-----cCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHH
Confidence 47899999999999999999999987654 23333332 5589999999999999999999999988776655
Q ss_pred HhcCC--CCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC
Q 002207 282 ILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359 (953)
Q Consensus 282 ~~~~~--~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P 359 (953)
..... ...+|||+||+| .|+++.++-. ++..+.+...+..... ..++... .......+
T Consensus 72 ~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~----~G~~~~~~~~~~~~~~-----------~~~~~~~----~~~~~~~~ 131 (184)
T PF13535_consen 72 REDSPLGNGPVIVQEYIPG-DEYSVDGVVD----DGEVVFAGISRYVRQS-----------PGHFSGG----VPTGYSVP 131 (184)
T ss_dssp HHHHS-HSSSEEEEE---S-EEEEEEEEEE----TTEEEEEEEEEEEEEE-----------TCCCSSS----EEEEEEES
T ss_pred HHhcccCCccEEEEEeeee-eeEEEEEEEE----cceEEEEEEEEEeccc-----------ccccccc----eeeeeecc
Confidence 43222 468999999997 9999998853 2334443433332210 0001100 11222223
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 360 PRFPIVVINSIREGASLLFQRLGL-CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 360 a~l~~~~~~~i~~~a~~~~~aLg~-~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
. +....+++++.+.++++++|+ .|++++||++ +++|+++|+|||+++|
T Consensus 132 ~--~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~-----------------~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 132 S--EPPLPEELRDLARKLLRALGYRNGFFHIDFIV-----------------DPDGELYFIEINPRFG 180 (184)
T ss_dssp ----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEE-----------------ETCCEEEEEEEESS--
T ss_pred c--ccccHHHHHHHHHHHHHHcCCceEEEEEEEEE-----------------eCCCCEEEEEECccCC
Confidence 2 223348899999999999999 8999999987 5679999999999987
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=182.66 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..++++ ++++|||++++....-.+ .+.+.++.+++ +||++|||+.+|++.|+.+|++.++|.++.
T Consensus 1 Dk~~~~~~---~~~~gvp~~pg~~~~~~~------~eea~~~a~~i-GyPVliKas~ggGG~gm~iv~~~~eL~~~~--- 67 (211)
T PF02786_consen 1 DKIRFRKL---AKKLGVPVPPGSTVPISS------VEEALEFAEEI-GYPVLIKASAGGGGRGMRIVHNEEELEEAF--- 67 (211)
T ss_dssp SHHHHHHH---HHHTT-BBSSBESSSBSS------HHHHHHHHHHH--SSEEEEETTSSTTTSEEEESSHHHHHHHH---
T ss_pred CHHHHHHH---HHHCCCCcCCCCCCCCCC------HHHHHHHHHhc-CCceEEeecccccccccccccchhhhhhhh---
Confidence 89999999 999999999987542111 23345667888 699999999999999999999999999754
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+.+....+ .+. .+..++||+|++|. +|++|.+++|+......+
T Consensus 68 ~~~~~~s~-----~~f--------g~~~v~iek~i~~~------------------------reiEvqvi~D~~gn~~~~ 110 (211)
T PF02786_consen 68 ERAQRESP-----AAF--------GDGPVLIEKFIEGA------------------------REIEVQVIRDGKGNVVHL 110 (211)
T ss_dssp HHHHHHHH-----HHH--------STS-EEEEE--SSE------------------------EEEEEEEEEETTSEEEEE
T ss_pred hhccccCc-----ccc--------ccceEEEeeehhhh------------------------hhhhhhhhhccccceeee
Confidence 33332200 000 15789999999984 799999999865443333
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~ 915 (953)
...+.. +.. +.+.+....|++. +++++.++|++.+.+++++||+.|.++|+|.+++++|++||+|+||
T Consensus 111 ~~~e~~--------~~~-hs~dsi~~~P~~~--L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp- 178 (211)
T PF02786_consen 111 GERECS--------EQR-HSQDSIEEAPAQT--LSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP- 178 (211)
T ss_dssp EEEEEE--------EEE-TTEEEEEEES-SS--S-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES-
T ss_pred eeeccc--------ccc-ccccceeEeeccc--cchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC-
Confidence 333321 111 3455677788874 8999999999999999999999999999999996579999999994
Q ss_pred CCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 916 PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
.++....+..++. .| +|+..-+.+|+
T Consensus 179 -R~~~~~p~~e~~t-----g~--dlv~~~~~ia~ 204 (211)
T PF02786_consen 179 -RLQREHPVTEKVT-----GY--DLVRVQIRIAL 204 (211)
T ss_dssp -S--TTHHHHHHHH-----T----HHHHHHHHHT
T ss_pred -CCCCcchHHHHHH-----CC--CHHHHHHHHHC
Confidence 5556655666665 45 56666666665
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=218.76 Aligned_cols=219 Identities=18% Similarity=0.163 Sum_probs=158.1
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
.+..+.+.+|+| |+++.++.+|+||..||++ |+++|||+|++..+.+.+ .+.++...+ +||+||||
T Consensus 84 ~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~---L~~~GIp~P~~~~v~~~~--------e~~~~~~~~-~~PvVVKP 149 (887)
T PRK02186 84 VASEVARRLGLP--AANTEAIRTCRDKKRLART---LRDHGIDVPRTHALALRA--------VALDALDGL-TYPVVVKP 149 (887)
T ss_pred HHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHH---HHHcCCCCCCEEEeCCHH--------HHHHHHHhC-CCCEEEEe
Confidence 466888999999 7889999999999999999 999999999999886532 233445678 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
.++++|.||.+|++.+|+.++ ++..... ....+|||+||+|+
T Consensus 150 ~~g~gS~GV~~v~~~~el~~a---~~~~~~~------------------~~~~~lvEEfI~G~----------------- 191 (887)
T PRK02186 150 RMGSGSVGVRLCASVAEAAAH---CAALRRA------------------GTRAALVQAYVEGD----------------- 191 (887)
T ss_pred CCCCCCCCeEEECCHHHHHHH---HHHHHhc------------------CCCcEEEeecccCC-----------------
Confidence 999999999999999998764 4433221 14679999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL 890 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~ 890 (953)
||+|.++..++....+ +..+.. ......|.. ....+|.+ ++++..+++.+.+.+++++||+
T Consensus 192 --------E~sVe~i~~~g~~~i~-~i~~k~-----~~~~~~~ve--~g~~~P~~---l~~~~~~~l~~~~~~~l~aLG~ 252 (887)
T PRK02186 192 --------EYSVETLTVARGHQVL-GITRKH-----LGPPPHFVE--IGHDFPAP---LSAPQRERIVRTVLRALDAVGY 252 (887)
T ss_pred --------cEEEEEEEECCcEEEE-EEEeee-----cCCCCCeEE--eccccCCC---CCHHHHHHHHHHHHHHHHHcCC
Confidence 8888888766543322 111110 000011111 12246766 5788999999999999999999
Q ss_pred c-ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 891 E-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 891 ~-G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
. |+.++||+++. +++||+|||+++|=+. +++....+.| .++++.+++.++
T Consensus 253 ~~G~~hvE~~~t~--~g~~liEIn~R~~G~~---i~~li~~a~G----vd~~~~~i~~~l 303 (887)
T PRK02186 253 AFGPAHTELRVRG--DTVVIIEINPRLAGGM---IPVLLEEAFG----VDLLDHVIDLHL 303 (887)
T ss_pred CcCceEEEEEEEC--CCEEEEEECCCCCCcc---HHHHHHHHHC----cCHHHHHHHHhC
Confidence 6 99999999983 5699999999876433 2332222222 245555565554
|
|
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=187.58 Aligned_cols=318 Identities=14% Similarity=0.107 Sum_probs=200.7
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+..++++|+.|++ .|+-++++.++++||+++.+........|. ...+. ..+ ..+.... ...
T Consensus 13 ~y~~~~~~i~~~~s----------hsaL~I~~gAkeeGf~ti~v~~~~~~~~y~---~~~~~---De~-i~v~~~~-di~ 74 (358)
T PRK13278 13 KYDLDNITIATIGS----------HSSLQILKGAKKEGFRTIAICKKKREVFYK---RFPVA---DEF-IIVDDFS-DIL 74 (358)
T ss_pred hcCcccceEEEEec----------ccHHHHHHHHHHCCCeEEEEEeCCCccccc---ccccc---ceE-EEEcchh-hhc
Confidence 44445679999972 358899999999999998776543321111 00000 000 0000000 000
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~ 231 (953)
.......+. +-+. +.+.||.+..--....+ +.+++|+.| +..+...+.||..+|++|+++|||+|+++ .+.+
T Consensus 75 -~~~~~~~l~-~~~~-iiIp~gs~v~y~~~d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~~~- 146 (358)
T PRK13278 75 -NEAVQEKLR-EMNA-ILIPHGSFVAYLGLENV-EKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKY--ESPE- 146 (358)
T ss_pred -CHHHHHHHh-hcCc-EEEeCCCcceeecHHHH-HHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CCHH-
Confidence 011111222 1233 33445666533334455 489999877 67799999999999999999999999963 2211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.+.||+||||..+.+|.|+.+|++.+|+.+++..++.. +..+.++|||||.| .||++.++-
T Consensus 147 ---------------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv~~f~ 210 (358)
T PRK13278 147 ---------------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYFHYFY 210 (358)
T ss_pred ---------------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEEEEEE
Confidence 14589999999999999999999999987777664321 12578999999998 999999984
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCc------cCCCceEEEcCCCCCHHHHHHHHHHHHHHHHH--
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY------LPTQQVAYHTPPRFPIVVINSIREGASLLFQR-- 380 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky------~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~a-- 380 (953)
..- +++...+...+..... .+..+..-++- .+..-..-..|+.+.+.+..++.+.+.++.++
T Consensus 211 s~~--~~~~e~l~id~r~~~~--------~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~ 280 (358)
T PRK13278 211 SPI--KNRLELLGIDRRYESN--------IDGLVRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSK 280 (358)
T ss_pred ecc--CCeEEEEeeceeeeec--------ccceeeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHH
Confidence 210 1222233332221110 11222211110 11111223478888888889999999998888
Q ss_pred --h--CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC-CCCC----cchHHHHHHHhCCCHHHHHHHH
Q 002207 381 --L--GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS-GMEQ----TSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 381 --L--g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P-G~t~----~S~~p~~a~~~G~s~~~ll~~l 451 (953)
+ |+.|..++|+++ ++++.+|++|||+++ |-|. +|-|..+.....+|...=+.+=
T Consensus 281 ~~~~~~~~Gp~~ie~~~-----------------~~d~~~~V~Eis~R~~ggtn~~~~~s~y~~~~~~~~~~~grria~e 343 (358)
T PRK13278 281 ELVPPGMIGPFCLESVV-----------------TDNLEIVVFEISARIVAGTNLYMNGSPYSYLYWDEPMSMGRRIARE 343 (358)
T ss_pred HhcCccccCCceEEEEE-----------------cCCCCEEEEEEeCcccCCccceeCCCcchheecCCcccHHHHHHHH
Confidence 4 788999999886 688999999999999 6443 4555555445567776666666
Q ss_pred HHHHhhh
Q 002207 452 IGHACSR 458 (953)
Q Consensus 452 i~~a~~r 458 (953)
|..|++.
T Consensus 344 i~~a~~~ 350 (358)
T PRK13278 344 IKLALEK 350 (358)
T ss_pred HHHHHhh
Confidence 6777665
|
|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=180.71 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=117.5
Q ss_pred HhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHH
Q 002207 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752 (953)
Q Consensus 673 l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~ 752 (953)
.|+||..|+++ ++++|||+|++..+...+ .+.++...+ +||+||||..+++|.||.++++.++|..+.
T Consensus 1 ~~~dK~~~~~~---~~~~gv~~P~~~~~~~~~--------~~~~~~~~~-~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 1 RCNDKYRMREL---LKKAGVPVPKTRIVDSEE--------ELRAFAEDL-GFPFVVKPVDGSGSRGVFIVHSPEELEAAL 68 (184)
T ss_dssp -TCCHHHHHHH---HHHHTS----EEEECSHH--------HHHHHHHHS-SSSEEEEESS-STTTT-EEESSHHHHHHHH
T ss_pred CCCCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHc-CCCEEEEcCccccCCCEEEeCCHHHHHHHH
Confidence 47899999999 899999999999887643 345566778 599999999999999999999999999765
Q ss_pred HHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCce
Q 002207 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 832 (953)
Q Consensus 753 ~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~ 832 (953)
+.+..... .....+|||+||+|. |+++.++..+|..+
T Consensus 69 ~~~~~~~~------------------~~~~~~ivqe~i~g~-------------------------e~~~~~~~~~G~~~ 105 (184)
T PF13535_consen 69 AEIREDSP------------------LGNGPVIVQEYIPGD-------------------------EYSVDGVVDDGEVV 105 (184)
T ss_dssp HHHHHHHS-------------------HSSSEEEEE---SE-------------------------EEEEEEEEETTEEE
T ss_pred HHHHHhcc------------------cCCccEEEEEeeeee-------------------------eEEEEEEEEcceEE
Confidence 44443321 014689999999997 88888776666653
Q ss_pred eeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC-cceEEEEEEEEcCCCcEEEEe
Q 002207 833 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL-EGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 833 ~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~-~G~ariDf~v~~~~g~~~viE 911 (953)
............. ++... .......+. +.+..+++++.+.++++++|+ .|+++|||+++. +|++|++|
T Consensus 106 ~~~~~~~~~~~~~--~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iE 174 (184)
T PF13535_consen 106 FAGISRYVRQSPG--HFSGG---VPTGYSVPS-----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIE 174 (184)
T ss_dssp EEEEEEEEEEETC--CCSSS---EEEEEEES-------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEE
T ss_pred EEEEEEEeccccc--ccccc---eeeeeeccc-----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEE
Confidence 3322211111010 00000 011112222 223448999999999999999 899999999996 59999999
Q ss_pred eCCCCCC
Q 002207 912 VNTVPGM 918 (953)
Q Consensus 912 INt~PGl 918 (953)
||+++|=
T Consensus 175 iN~R~~G 181 (184)
T PF13535_consen 175 INPRFGG 181 (184)
T ss_dssp EESS--S
T ss_pred ECccCCC
Confidence 9998763
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=184.59 Aligned_cols=222 Identities=16% Similarity=0.122 Sum_probs=160.3
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEEC-CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhh
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG-TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvG-s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~ 239 (953)
++++|+++|..+... -..-++.|+..|+..+- ++..+..++.||+.+.+.++++|+|+|+++.+++.+. +...
T Consensus 64 ~~~Idv~~P~~~~~~--l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~e----l~~a 137 (329)
T PF15632_consen 64 EHGIDVFVPGRNREL--LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADE----LKAA 137 (329)
T ss_pred HhCCeEEEcCccHHH--HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHH----HHHH
Confidence 468999999998644 33457889999999988 7899999999999999999999999999999987653 3333
Q ss_pred hhhcCCCCCCCcEEEeeCCCCCceeEEEeCC-HHHHH------------HHHHHhHh-cCCCCcEEEeccCCCCeEEEEE
Q 002207 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG-VIDSL------------KKAKGIIL-EGIDDRVVVELFLEGGSEFTAI 305 (953)
Q Consensus 240 ~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~-~~el~------------~~a~~~~~-~~~~~~vlVEefI~Gg~E~tv~ 305 (953)
.+++ ...+.|+.|||+.|-+|.|..++++ .+++. +.+..++. ...-..+||.+|++| .||+|.
T Consensus 138 ~~~l--~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD 214 (329)
T PF15632_consen 138 YEEL--RFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVD 214 (329)
T ss_pred HHhc--CCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEE
Confidence 3332 2234579999999999999999983 33211 11122222 123468999999998 999999
Q ss_pred EEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 002207 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCD 385 (953)
Q Consensus 306 Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G 385 (953)
++.+ .++.++..|. .|. |. ..... - ...+.++|.++.+++|+.|
T Consensus 215 ~l~~----~G~viaaV~R----------------------~K~--G~-~q~l~---~----~~~l~e~a~~l~~~~~l~g 258 (329)
T PF15632_consen 215 CLAD----EGRVIAAVPR----------------------RKL--GR-RQVLE---N----DEELIELARRLAEAFGLDG 258 (329)
T ss_pred EEec----CCEEEEEEEE----------------------Eec--Cc-eeEEE---E----CHHHHHHHHHHHHHhCCCc
Confidence 9953 3444432221 111 11 11111 1 2456899999999999999
Q ss_pred eeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHH
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
..+|||+. |.+|.+++|||||+|. ..++ +..++|++++.+.-
T Consensus 259 ~~NiQ~r~-----------------d~~g~p~LLEINpR~s----GGi~-~s~~aGvNlp~la~ 300 (329)
T PF15632_consen 259 LFNIQFRY-----------------DEDGNPKLLEINPRPS----GGIG-YSCAAGVNLPYLAV 300 (329)
T ss_pred eEEEEEEE-----------------cCCCCEEEEEeCCCCc----cchh-hHhhcCCChHHHHH
Confidence 99999875 6789999999999886 2223 33478999887754
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-17 Score=176.10 Aligned_cols=269 Identities=19% Similarity=0.141 Sum_probs=189.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
++|+||.||+= |+-...+.++.||+|++++.+.+.....+....... +++ ..+..
T Consensus 2 ~tvgIlGGGQL---------grMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~----~~d------------D~~al 56 (375)
T COG0026 2 KTVGILGGGQL---------GRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVA----AYD------------DPEAL 56 (375)
T ss_pred CeEEEEcCcHH---------HHHHHHHHHhcCCEEEEecCCCCCchhhcccceeec----CCC------------CHHHH
Confidence 57999999985 888999999999999988766664332221111100 000 01122
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+..+.|+|--=+.=-. .-.+..+.....+ -+++.+.+++.||+..|++|+++|+|||+|..+.+.++ +.
T Consensus 57 ~ela~~~DViT~EfE~V~--~~aL~~l~~~~~v---~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~e----l~ 127 (375)
T COG0026 57 RELAAKCDVITYEFENVP--AEALEKLAASVKV---FPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEE----LD 127 (375)
T ss_pred HHHHhhCCEEEEeeccCC--HHHHHHHHhhcCc---CCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHH----HH
Confidence 334457888866552100 1124444444344 47899999999999999999999999999999987653 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCC-ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGS-SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gs-S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
..++. +++|.|+|-+++|. ++|..++++.+++...+.... .....++|+|++=.+|+++.+.+. .++.
T Consensus 128 ~~~~~-----~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~---~~~~~vlE~fV~F~~EiSvi~aR~---~~G~ 196 (375)
T COG0026 128 AAAAD-----LGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLA---EGGVPVLEEFVPFEREISVIVARS---NDGE 196 (375)
T ss_pred HHHHH-----cCCceEEEeccccccCCCeEEeeCcccchhhHhhhh---ccCceeEEeecccceEEEEEEEEc---CCCC
Confidence 44333 66899999999877 999999998877655443221 223349999998668898888874 3334
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCC-ceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ-QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~-~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
..+.++.| .++.++ -...+.|+.++++++++.+++|.++.++|++.|+..|+||+
T Consensus 197 ~~~yP~~e----------------------N~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv-- 252 (375)
T COG0026 197 VAFYPVAE----------------------NVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFV-- 252 (375)
T ss_pred EEEecccc----------------------eeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEE--
Confidence 44444433 222222 12345799999999999999999999999999999999997
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
+.||+++++|+-|+|.=+.+
T Consensus 253 ---------------~~dg~llvNEiAPRvHNSGH 272 (375)
T COG0026 253 ---------------TPDGELLVNEIAPRVHNSGH 272 (375)
T ss_pred ---------------ECCCcEEEeeccCCCCCccc
Confidence 57889999999999974443
|
|
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=179.39 Aligned_cols=234 Identities=17% Similarity=0.249 Sum_probs=174.8
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|+..|+.....+|+..||-|+||+..+.+-.-||...|++ ++++|+|+.|.+--...+ .+.+.+...++ +
T Consensus 79 GFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~i---m~~AgVp~vpG~~g~~qs------~e~~~~~a~eI-g 148 (670)
T KOG0238|consen 79 GFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQI---MKAAGVPLVPGYHGEDQS------DEEAKKVAREI-G 148 (670)
T ss_pred cccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHH---HHhcCCccccCccccccc------HHHHHHHHHhc-C
Confidence 5555899999999999999999999999999999999999 899999988764322211 24456777889 6
Q ss_pred CcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccccccccccc
Q 002207 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803 (953)
Q Consensus 724 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 803 (953)
||+++|+..+|+++|+.++.+.+|+.+ .++.+.+.. +.+| .++.+++|+||+..
T Consensus 149 yPvMiKa~~GGGGkGMria~~~~ef~~---~~~~ak~Ea-~~sF------------Gdd~~llEkfi~np---------- 202 (670)
T KOG0238|consen 149 YPVMIKATAGGGGKGMRIAWSEEEFEE---GLESAKQEA-AKSF------------GDDGMLLEKFIDNP---------- 202 (670)
T ss_pred CcEEEEeccCCCCcceEeecChHHHHH---HHHHHHHHH-Hhhc------------CcchhhHHHhccCC----------
Confidence 999999999999999999999999886 333332210 0011 17889999999987
Q ss_pred ccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHH
Q 002207 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 883 (953)
Q Consensus 804 ~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~ 883 (953)
|.+++.|++++-.....+..... .+-.-..|. ..-.|+| .++++...++.+.|.+
T Consensus 203 --------------RHiEvQv~gD~hGnav~l~ERdC----SvQRRnQKi-----iEEaPap--~l~~e~R~~lgeaAv~ 257 (670)
T KOG0238|consen 203 --------------RHIEVQVFGDKHGNAVHLGERDC----SVQRRNQKI-----IEEAPAP--NLPEETRRALGEAAVR 257 (670)
T ss_pred --------------ceEEEEEEecCCCcEEEeccccc----chhhhhhhh-----hhcCCCC--CCCHHHHHHHHHHHHH
Confidence 69999999987433222211110 111111221 2234665 4899999999999999
Q ss_pred HHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC-CCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 884 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 884 ~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt-~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
+++++|..|...|+|++|. .+++||+|+||+--.. |.+ . ..+..||+++.|+.|.
T Consensus 258 aa~avgY~~aGTVEFi~D~-~~~FyFmEmNTRLQVEHPvT---E-------mItg~DLVewqiRvA~ 313 (670)
T KOG0238|consen 258 AAKAVGYVGAGTVEFIVDS-KDNFYFMEMNTRLQVEHPVT---E-------MITGTDLVEWQIRVAA 313 (670)
T ss_pred HHHhhCCcccceEEEEEcC-CCcEEEEEeeceeeecccch---h-------hccchHHHHHHHHHhc
Confidence 9999999999999999997 6899999999965543 332 1 1355799999998875
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=179.07 Aligned_cols=224 Identities=18% Similarity=0.169 Sum_probs=163.1
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeC-CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG-PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G-~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
+..+|+++|..|... -..=+..|+..|+..+- ++..+..++.||..+.+. +++.|||+|+++.+++.+
T Consensus 64 ~~~Idv~~P~~~~~~--l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~---~~~~~ipvp~~~~v~t~~------ 132 (329)
T PF15632_consen 64 EHGIDVFVPGRNREL--LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEF---MEANGIPVPPYWRVRTAD------ 132 (329)
T ss_pred HhCCeEEEcCccHHH--HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHH---HHhCCCCCCCEEEeCCHH------
Confidence 457899999887765 22346889999999998 889999999999999998 899999999999998754
Q ss_pred hhHHHHHHhhcCCCc---EEEecCCCCCCcceEEeC-CcccHHHHHH---------HHHHHHhhCCCCCcccccccccCC
Q 002207 711 VDIWHELTSKLQCKT---LCVKPARDGCSTGVARLC-CAEDLTVYVK---------ALEECLLRIPPNSFSRAHGMIEMP 777 (953)
Q Consensus 711 ~~~~~~~~~~lg~~P---lvVKP~~~gsS~GV~~v~-~~~eL~~~~~---------al~~a~~~~~~~~~~~~~~~~~~p 777 (953)
.++...+++ .+| +||||+.+-+|.|.++++ +.++++.+.. .+..+++. +
T Consensus 133 --el~~a~~~l-~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~--------~------- 194 (329)
T PF15632_consen 133 --ELKAAYEEL-RFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQR--------S------- 194 (329)
T ss_pred --HHHHHHHhc-CCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhc--------c-------
Confidence 234444555 354 999999999999999998 5555543211 11111111 0
Q ss_pred CCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC
Q 002207 778 NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857 (953)
Q Consensus 778 ~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~ 857 (953)
....++||.||++|. |++|+++.+.|..++..|..+. |.
T Consensus 195 -~~~~~llvMeyL~G~-------------------------EySVD~l~~~G~viaaV~R~K~---------------G~ 233 (329)
T PF15632_consen 195 -EEFPPLLVMEYLPGP-------------------------EYSVDCLADEGRVIAAVPRRKL---------------GR 233 (329)
T ss_pred -CCCCCcEEecCCCCC-------------------------eEEEEEEecCCEEEEEEEEEec---------------Cc
Confidence 125789999999998 9999999999887665554322 11
Q ss_pred ceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCH
Q 002207 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937 (953)
Q Consensus 858 ~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp 937 (953)
...+. ..+++.+.|+++++++|+.|+.+|+|+.|. +|+++++||||+|.=+ .+++.++ |..+|
T Consensus 234 ~q~l~----------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g~p~LLEINpR~sGG-----i~~s~~a-GvNlp 296 (329)
T PF15632_consen 234 RQVLE----------NDEELIELARRLAEAFGLDGLFNIQFRYDE-DGNPKLLEINPRPSGG-----IGYSCAA-GVNLP 296 (329)
T ss_pred eeEEE----------ECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CCCEEEEEeCCCCccc-----hhhHhhc-CCChH
Confidence 12221 123667889999999999999999999985 7999999999866422 2333333 45777
Q ss_pred HHHHH
Q 002207 938 HQFFR 942 (953)
Q Consensus 938 ~~l~~ 942 (953)
...+.
T Consensus 297 ~la~~ 301 (329)
T PF15632_consen 297 YLAVK 301 (329)
T ss_pred HHHHH
Confidence 55554
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=176.42 Aligned_cols=237 Identities=14% Similarity=0.168 Sum_probs=167.9
Q ss_pred CcCEEEEcCCCCCCCch-HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 163 NVDIVFPTIHGRFGEDG-GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg-~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
..|++|+.....+-- + .+-..+|..|++.+ +++.+...|.||..+-++|..+|+|+|++.++.+.+... .+.+
T Consensus 78 ~~D~i~~R~~~~~~~-~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~----~~~~ 151 (318)
T COG0189 78 ELDVIIMRKDPPFDF-ATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAA----EFVA 151 (318)
T ss_pred cCCEEEEecCCchhh-HHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHH----HHHH
Confidence 689999988554433 3 25679999999887 679999999999999999999999999999988753221 2221
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHH-HHHHHHHHhHhcCCCCcEEEeccCCC-CeEEEEEEEEeCCCCccccEE
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI-DSLKKAKGIILEGIDDRVVVELFLEG-GSEFTAIVLDVGSGFDCHPVV 319 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~-el~~~a~~~~~~~~~~~vlVEefI~G-g~E~tv~Vl~~~~g~~~~~v~ 319 (953)
..++||+|+||.+|..|.||.++++.+ ++.+.+.... ......+|||+||+- .++....++++ +.+++
T Consensus 152 ----~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~-~~~~~~~ivQeyi~~~~~~~rrivv~~-----~~~~~ 221 (318)
T COG0189 152 ----EHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLT-QEGRKLIIVQEYIPKAKRDDRRVLVGG-----GEVVA 221 (318)
T ss_pred ----HhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHh-ccccceEehhhhcCcccCCcEEEEEeC-----CEEeE
Confidence 136789999999999999999999998 7776655432 223346999999942 24556666642 22333
Q ss_pred ecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCc
Q 002207 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399 (953)
Q Consensus 320 l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~ 399 (953)
....+.. + .--+|+..+..|+. ..|..+++++ +++|.++.++||+ +++.||++.
T Consensus 222 ~y~~~R~--~----------~~~~~R~N~a~Gg~---~e~~~l~~e~----~elA~kaa~~lGl-~~~GVDiie------ 275 (318)
T COG0189 222 IYALARI--P----------ASGDFRSNLARGGR---AEPCELTEEE----EELAVKAAPALGL-GLVGVDIIE------ 275 (318)
T ss_pred Eeeeccc--c----------CCCCceeecccccc---ccccCCCHHH----HHHHHHHHHHhCC-eEEEEEEEe------
Confidence 1111111 1 11256667766652 2455676665 8999999999987 599999875
Q ss_pred cccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 400 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 400 ~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++| +||+|||..|+.-.. +.+..|++..+++...++...++
T Consensus 276 -----------~~~g-~~V~EVN~sP~~~~~-----i~~~~g~~~~~~~~~~ie~~~~~ 317 (318)
T COG0189 276 -----------DKDG-LYVTEVNVSPTGKGE-----IERVTGVNIAGLIIDAIEKFVRA 317 (318)
T ss_pred -----------cCCC-cEEEEEeCCCccccc-----hhhhcCCchHHHHHHHHHHHHhc
Confidence 4455 899999999964432 22356888888888888776543
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=183.72 Aligned_cols=234 Identities=18% Similarity=0.267 Sum_probs=172.2
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|+..||......|+..|+-++||++.+....-||...|++ +.++|+|+.|.+.=...+ .+.+..+.+++ +
T Consensus 83 GFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l---~~~AgVp~VPG~~g~~qd------~~~~~~~A~ei-G 152 (645)
T COG4770 83 GFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKL---AAEAGVPTVPGYHGPIQD------AAELVAIAEEI-G 152 (645)
T ss_pred cccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHH---HHHcCCCccCCCCCcccC------HHHHHHHHHhc-C
Confidence 4455899999999999999999999999999999999999 899999998875322211 23355667889 6
Q ss_pred CcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccccccccccc
Q 002207 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803 (953)
Q Consensus 724 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 803 (953)
||+.+|++.+|+++|+.++.+.+|+.+ +++.+.+.- .. +.| ++.++||+|++-.
T Consensus 153 yPVlIKAsaGGGGKGMRvv~~~~e~~e---~l~sarrEA-~a----sFG--------ddrv~iEkyl~~P---------- 206 (645)
T COG4770 153 YPVLIKASAGGGGKGMRVVETPEEFAE---ALESARREA-KA----SFG--------DDRVFIEKYLDKP---------- 206 (645)
T ss_pred CcEEEEeccCCCCCceEeecCHHHHHH---HHHHHHHHH-Hh----hcC--------CceEehhhhcCCC----------
Confidence 999999999999999999999999886 444443220 00 111 7899999999976
Q ss_pred ccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHH
Q 002207 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 883 (953)
Q Consensus 804 ~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~ 883 (953)
|.|++.|++++......+..... .+..-..|. ..--|+|. |+++..++|-+.|.+
T Consensus 207 --------------RHIEiQV~aD~HGNvv~LgERdC----SlQRRhQKV-----IEEAPaP~--l~~~~R~amg~aAv~ 261 (645)
T COG4770 207 --------------RHIEIQVFADQHGNVVHLGERDC----SLQRRHQKV-----IEEAPAPF--LTEETREAMGEAAVA 261 (645)
T ss_pred --------------ceEEEEEEecCCCCEEEeecccc----chhhhcchh-----hhcCCCCC--CCHHHHHHHHHHHHH
Confidence 69999999987544333222111 011111121 22346664 899999999999999
Q ss_pred HHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC-CCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 884 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 884 ~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt-~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
++++.|..|-..|+|+++. ++.+||+|+||+--.- |.+ + ..-..||+++.|+.|-
T Consensus 262 ~a~avgY~gAGTVEFivd~-~~~f~FlEMNTRLQVEHPVT--------E--~iTGiDLVewqiRVA~ 317 (645)
T COG4770 262 AAKAVGYVGAGTVEFIVDA-DGNFYFLEMNTRLQVEHPVT--------E--LITGIDLVEWQIRVAS 317 (645)
T ss_pred HHHhcCCCcCceEEEEEcC-CCcEEEEEeecceeccccch--------h--hhhhhHHHHHHHHHhc
Confidence 9999999999999999996 6889999999965443 211 0 0123478888777664
|
|
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=173.79 Aligned_cols=223 Identities=20% Similarity=0.203 Sum_probs=164.3
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhh
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~ 240 (953)
..++|++|.--.-.. -..|...|+..|||..|++..++.+-.+|..+|.+|+++||||+.|..+.+.+. +.+++
T Consensus 61 ~~~idl~vVGPE~pL--~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~----a~ayi 134 (428)
T COG0151 61 EKNVDLVVVGPEAPL--VAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEE----AKAYI 134 (428)
T ss_pred HcCCCEEEECCcHHH--hhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHH----HHHHH
Confidence 347999998643211 124778999999999999999999999999999999999999999998885443 33444
Q ss_pred hhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-C---CCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-G---IDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 241 ~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-~---~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
+ +.+.|+||||....+++||.++.+.+|+.+++.+++.. . -..+|+||||++| .|+++.++-++.
T Consensus 135 ~-----~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~----- 203 (428)
T COG0151 135 D-----EKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFVDGK----- 203 (428)
T ss_pred H-----HcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccc-eEEEEEEEEcCC-----
Confidence 3 36779999999999999999999999999888877653 1 1257999999998 999999996432
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHhC-----CCCeeEe
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRLG-----LCDFARI 389 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aLg-----~~G~arV 389 (953)
-+...|. .++....||-+.--..++ +.-..|++ +++++.+++. ++.....+.+- ++|+.-.
T Consensus 204 ~v~p~p~-----------aQDhKra~dgD~GPNTGG-MGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~ 271 (428)
T COG0151 204 TVIPMPT-----------AQDHKRAYDGDTGPNTGG-MGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYA 271 (428)
T ss_pred eEEECcc-----------ccccccccCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 2322221 112445666655544444 44455655 7888777766 77777666663 3455555
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
.++ ++++| |++||.|.+-|=-.+
T Consensus 272 glM-----------------lt~~G-PkViEfN~RFGDPEt 294 (428)
T COG0151 272 GLM-----------------LTADG-PKVIEFNARFGDPET 294 (428)
T ss_pred EEE-----------------EcCCC-cEEEEEecccCChhH
Confidence 554 48888 999999999885443
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-16 Score=161.59 Aligned_cols=218 Identities=23% Similarity=0.261 Sum_probs=161.7
Q ss_pred hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
.++++|.+.|-+.--.-+ .+. -||..|.. +-|...|..++||+...+++. .+++|+||.+|....+.+
T Consensus 72 ~rekPd~IVpEiEAI~td--~L~-elE~~G~~-VVP~ArAt~ltMnRegiRrlA--AeeLglpTs~Y~fa~s~~------ 139 (394)
T COG0027 72 EREKPDYIVPEIEAIATD--ALV-ELEEEGYT-VVPNARATKLTMNREGIRRLA--AEELGLPTSKYRFADSLE------ 139 (394)
T ss_pred HhhCCCeeeehhhhhhHH--HHH-HHHhCCce-EccchHHHHhhhcHHHHHHHH--HHHhCCCCccccccccHH------
Confidence 467899998876321111 222 24678886 458889999999999999984 578999999998876533
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.+..+++ +|||+|||.-+.|+.|-+.|++.++++. |.+.+...- + ....++|||+||
T Consensus 140 --e~~~a~~~i-GfPcvvKPvMSSSGkGqsvv~~~e~ve~---AW~~A~~g~------R---------~~~~RVIVE~fv 198 (394)
T COG0027 140 --ELRAAVEKI-GFPCVVKPVMSSSGKGQSVVRSPEDVEK---AWEYAQQGG------R---------GGSGRVIVEEFV 198 (394)
T ss_pred --HHHHHHHHc-CCCeecccccccCCCCceeecCHHHHHH---HHHHHHhcC------C---------CCCCcEEEEEEe
Confidence 356677889 6999999999999999999999999985 677775431 1 125889999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+-+ .|+|.-.+..-+...+++..+-.... -.||.+.|+ |.. ++
T Consensus 199 ~fd------------------------~EiTlLtvr~~~~~~~Fc~PIGHrq~--dgdY~ESWQ--------P~~---mS 241 (394)
T COG0027 199 KFD------------------------FEITLLTVRAVDGTGSFCAPIGHRQE--DGDYRESWQ--------PQE---MS 241 (394)
T ss_pred cce------------------------EEEEEEEEEEecCCCCcCCCcccccC--CCChhcccC--------ccc---cC
Confidence 975 36666655543332223322222221 234555444 555 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+...++.+.+|+++.++||..|+..|++|+. .+++||.|+.++|-=|.
T Consensus 242 ~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~FsEVSPRPHDTG 289 (394)
T COG0027 242 EAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIFSEVSPRPHDTG 289 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEEeecCCCCCCCc
Confidence 9999999999999999999999999999998 46899999999997764
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=158.64 Aligned_cols=272 Identities=18% Similarity=0.141 Sum_probs=177.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
..||.+|..|-= |+.+.=++++.|.+|+.++--.+. |+..- ++....+.-+ ..+.
T Consensus 12 a~kvmLLGSGEL---------GKEvaIe~QRLG~eViAVDrY~~A------PAmqV----Ahrs~Vi~Ml------D~~a 66 (394)
T COG0027 12 ATKVMLLGSGEL---------GKEVAIEAQRLGVEVIAVDRYANA------PAMQV----AHRSYVIDML------DGDA 66 (394)
T ss_pred CeEEEEecCCcc---------chHHHHHHHhcCCEEEEecCcCCC------hhhhh----hhheeeeecc------CHHH
Confidence 458888875532 556667789999999866422221 11100 0000000000 0111
Q ss_pred HHh--hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccch
Q 002207 157 AEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 157 ~~~--~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~ 233 (953)
... .+++||+++|-+.--. -| .+. -||..|...+ +...+..++||+...++++ ++.|+||.+|....+.++
T Consensus 67 l~avv~rekPd~IVpEiEAI~-td-~L~-elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e-- 140 (394)
T COG0027 67 LRAVVEREKPDYIVPEIEAIA-TD-ALV-ELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEE-- 140 (394)
T ss_pred HHHHHHhhCCCeeeehhhhhh-HH-HHH-HHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHH--
Confidence 111 2458999999985311 11 122 3577888754 6789999999999998875 569999999998876543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh--cCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL--EGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~--~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.+..+ .++|||+|||..++|+.|-+++++.+++.++...... .....+|+||+||+--.|+|.-.++.-+
T Consensus 141 --~~~a~~-----~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~ 213 (394)
T COG0027 141 --LRAAVE-----KIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVD 213 (394)
T ss_pred --HHHHHH-----HcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEec
Confidence 333332 3789999999999999999999999987655544332 2346799999999843455555554332
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
++. +.+-|.+- .+.-.||..-| .|..+++...++.+.+|.++..+||-+|+..|++
T Consensus 214 ~~~--~Fc~PIGH-------------rq~dgdY~ESW---------QP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVEl 269 (394)
T COG0027 214 GTG--SFCAPIGH-------------RQEDGDYRESW---------QPQEMSEAALEEAQSIAKRVTDALGGRGLFGVEL 269 (394)
T ss_pred CCC--CcCCCccc-------------ccCCCChhccc---------CccccCHHHHHHHHHHHHHHHHhhcCccceeEEE
Confidence 221 11111110 11223444444 4677999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t 428 (953)
|+ ...++||.|+-|+|.-|
T Consensus 270 fv------------------~gDeV~FsEVSPRPHDT 288 (394)
T COG0027 270 FV------------------KGDEVIFSEVSPRPHDT 288 (394)
T ss_pred EE------------------eCCEEEEeecCCCCCCC
Confidence 87 23469999999999754
|
|
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-16 Score=186.10 Aligned_cols=301 Identities=17% Similarity=0.196 Sum_probs=213.1
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe----cCCc-------
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL----QGSE------- 230 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~----~~~~------- 230 (953)
..+|+|+..- |.-.||-.++++|...||-|+|++..++.-..||...-.+++.+|+||.||--- ...+
T Consensus 136 ~~VdAVWaGW-GHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~ 214 (2196)
T KOG0368|consen 136 TDVDAVWAGW-GHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVS 214 (2196)
T ss_pred cccceEeecc-cccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEe
Confidence 3799999875 456689999999999999999999999999999999999999999999987421 0000
Q ss_pred ---c--chh---hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 231 ---V--NES---ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 231 ---~--~~~---~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+ .+. ..++-++. .+.++||+++|...|||++||.+|++.+|+.....+...+-.+..++|-+...+.|.+
T Consensus 215 Vpedly~Kacv~~~eegLea--ae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHl 292 (2196)
T KOG0368|consen 215 VPEDLYEKACVRNVEEGLEA--AEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHL 292 (2196)
T ss_pred cCHHHhhhhhcCCHHHHHHH--HHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhCCCCceeeeecccCccee
Confidence 0 000 01111111 1348999999999999999999999999987666665555567899999999999999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHh
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aL 381 (953)
+|.++.|..||. +.+.-. ...+.....|. ....|+. -+.++.+++++.|.++.+-.
T Consensus 293 EVQlLaDqYGn~---IsLfgR--------------DCSiQRRhQKI------IEEAPatIap~etf~~Me~~AvrLak~V 349 (2196)
T KOG0368|consen 293 EVQLLADQYGNV---ISLFGR--------------DCSIQRRHQKI------IEEAPATIAPPETFKKMEQAAVRLAKLV 349 (2196)
T ss_pred eeehhhhhcCCE---eEeecc--------------cchHHHHHHHH------HhhCCcccCCHHHHHHHHHHHHHHHHhh
Confidence 999998777652 221111 11122222232 2335776 47889999999999999999
Q ss_pred CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCC--cch-----HH--HHHHHhCCCHHHHHHHHH
Q 002207 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ--TSF-----LF--QQASKVGFSHSNILRTII 452 (953)
Q Consensus 382 g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~--~S~-----~p--~~a~~~G~s~~~ll~~li 452 (953)
|+.+.+.|++.+.| ++|++||||.||+-..+. |-+ +| |+.-++|+..-.+=+-=-
T Consensus 350 GYvSAGTVEYLYsp----------------~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~ 413 (2196)
T KOG0368|consen 350 GYVSAGTVEYLYSP----------------DDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRR 413 (2196)
T ss_pred cceecceEEEEEec----------------CCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHH
Confidence 99999999998853 479999999999877653 222 22 233466776544321111
Q ss_pred HHHhhhC-------CCCCCCCCcceecccccccCCCccccccCCCceEEEEecCCCcccceeccccHHHHH
Q 002207 453 GHACSRF-------PNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVW 516 (953)
Q Consensus 453 ~~a~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v~ 516 (953)
-..+... .+.+.+.-.+|++-+|+.+++|++.|.|+.|+. ||+...|..+||
T Consensus 414 lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsEdPddgFkPSsG~v------------~eLnFrSssnvW 472 (2196)
T KOG0368|consen 414 LYGLEPTGDSPIDFENAKLPCPKGHCIAARITSEDPDDGFKPSSGTV------------QELNFRSSSNVW 472 (2196)
T ss_pred HcCCCCCCCCCCChhhccCCCCCceEEEEEeeccCCCCCcCCCCCee------------EEeccCCCCCee
Confidence 1111111 122333446899999999999999999988763 455666666665
|
|
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=187.33 Aligned_cols=199 Identities=20% Similarity=0.159 Sum_probs=130.8
Q ss_pred ChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcc
Q 002207 667 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746 (953)
Q Consensus 667 ~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~ 746 (953)
+..+..+|+||..||++ |+++|||||++..+.+.+ +... ....+++||+||||.++++|.||+++.+..
T Consensus 466 S~ia~~i~~DK~~TK~i---L~~aGIPVP~g~~~~~~~-------~a~~-~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~ 534 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKV---LAEAGFRVPFGDEFSSQA-------LALE-AFSLFENKAIVVKPKSTNYGLGITIFKNGF 534 (737)
T ss_pred cHHHHHHhcCHHHHHHH---HHHcCcCCCCEEEECCHH-------HHHH-HHHHhcCCCEEEeeCCCCCcCCeEEecCcC
Confidence 34456899999999999 999999999999886532 1112 223443599999999999999999998866
Q ss_pred cHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEc
Q 002207 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG 826 (953)
Q Consensus 747 eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~ 826 (953)
+.+++.+|++.++++ +..+|||+||+|+ |++|.|++
T Consensus 535 ~~eel~~Al~~A~~~-------------------~~~VLVEefI~G~-------------------------EyRv~VIg 570 (737)
T TIGR01435 535 TLEDFQEALNIAFSE-------------------DSSVIIEEFLPGT-------------------------EYRFFVLN 570 (737)
T ss_pred CHHHHHHHHHHHHhc-------------------CCeEEEEecccCC-------------------------EEEEEEEC
Confidence 666677788888765 5789999999998 77777776
Q ss_pred CCCC--ceeeCceEEEec-----------CC-------------cc-------------ccccccccCCCceeEc-----
Q 002207 827 KCGS--MHSLMPSVTVKE-----------SG-------------DI-------------LSLEEKFQGGTGINLT----- 862 (953)
Q Consensus 827 ~~~~--~~~~~p~~~i~~-----------~~-------------~~-------------~d~~~Ky~~g~~~~~~----- 862 (953)
++-- ....++.+.=.. +. .+ |++++=-..|....+.
T Consensus 571 ~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNl 650 (737)
T TIGR01435 571 DKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNV 650 (737)
T ss_pred CeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcc
Confidence 5310 000111110000 00 00 0000000001111000
Q ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC-------CcEEEEeeCCCCCCCCC
Q 002207 863 --PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-------GEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 863 --P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~-------g~~~viEINt~PGlt~~ 921 (953)
-....++++++....+++|.++++++|+. ++.||+++..-+ ....|||+|..|||.-+
T Consensus 651 stGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 651 STGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMH 717 (737)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchhhh
Confidence 00011456788899999999999999997 999999985311 12468999999999765
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=175.26 Aligned_cols=232 Identities=21% Similarity=0.266 Sum_probs=174.0
Q ss_pred ccChHHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE
Q 002207 621 RHSINEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV 699 (953)
Q Consensus 621 ~~~~~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~ 699 (953)
.++.++.+..++ ...|.+.|.. |...|+-....-|...||-|+||.+......-||...+.. ..++|+|+.|..-
T Consensus 66 YL~IdeII~iAk~~gaDaIhPGY-GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~---A~~agvPvipgt~ 141 (1149)
T COG1038 66 YLSIDEIIRIAKRSGADAIHPGY-GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNA---AIKAGVPVIPGTD 141 (1149)
T ss_pred hccHHHHHHHHHHcCCCeecCCc-ccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHH---HHHcCCCccCCCC
Confidence 345667776655 3567766654 6677999999999999999999999999999999999998 8999999987532
Q ss_pred EeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCC
Q 002207 700 RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNP 779 (953)
Q Consensus 700 v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~ 779 (953)
-... . .+...++.++. +||++||.+.+|+++|+.+|.+.++|.+ +++.+.+.. ..+.|
T Consensus 142 ~~~~-----~-~ee~~~fa~~~-gyPvmiKA~~GGGGRGMR~vr~~~~l~~---~~~~AksEA-----kaAFG------- 199 (1149)
T COG1038 142 GPIE-----T-IEEALEFAEEY-GYPVMIKAAAGGGGRGMRVVRSEADLAE---AFERAKSEA-----KAAFG------- 199 (1149)
T ss_pred CCcc-----c-HHHHHHHHHhc-CCcEEEEEccCCCccceeeecCHHHHHH---HHHHHHHHH-----HHhcC-------
Confidence 1111 1 24456777888 6999999999999999999999999986 344433220 01122
Q ss_pred CCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCc-eeeCceEEEecCCccccccccccCCCc
Q 002207 780 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM-HSLMPSVTVKESGDILSLEEKFQGGTG 858 (953)
Q Consensus 780 ~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~-~~~~p~~~i~~~~~~~d~~~Ky~~g~~ 858 (953)
++.+.||+||+.. +.++|.++++.... +.+. +- .-.+-.-.. ..
T Consensus 200 -~~eVyvEk~ve~p------------------------kHIEVQiLgD~~GnvvHLf---ER--DCSvQRRhQ-----KV 244 (1149)
T COG1038 200 -NDEVYVEKLVENP------------------------KHIEVQILGDTHGNVVHLF---ER--DCSVQRRHQ-----KV 244 (1149)
T ss_pred -CCcEEhhhhhcCc------------------------ceeEEEEeecCCCCEEEEe---ec--ccchhhccc-----ee
Confidence 6889999999987 59999999986432 2221 10 000111111 23
Q ss_pred eeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCC
Q 002207 859 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916 (953)
Q Consensus 859 ~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~P 916 (953)
..+.|++ .+++++.++|.+.|.++++..|..+...++|.++. +|++|||||||+=
T Consensus 245 VE~APa~--~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~-~~~fyFIEvNPRi 299 (1149)
T COG1038 245 VEVAPAP--YLSPELRDEICDDAVKLARNIGYINAGTVEFLVDE-DGKFYFIEVNPRI 299 (1149)
T ss_pred EEecCCC--CCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcC-CCcEEEEEecCce
Confidence 4566776 48999999999999999999999999999999995 6899999999743
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=177.99 Aligned_cols=203 Identities=14% Similarity=0.089 Sum_probs=138.7
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
++.+|+|+|..... .........|+. ++...+++..+...|.||..++++ ++++|||+|+++.+.+.+
T Consensus 74 ~~~id~vIP~~e~~-~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~---~~~~GipvP~t~~v~~~~------- 141 (389)
T PRK06849 74 RENIDLLIPTCEEV-FYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQ---ARSLGLSVPKTYLITDPE------- 141 (389)
T ss_pred HcCCCEEEECChHH-HhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHH---HHHcCCCCCCEEEeCCHH-------
Confidence 35689999987432 222222233332 456678999999999999999999 999999999999887533
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++..+..+||+|+||..+++|.|+.++.+.+.+. ... . ....++||||||+
T Consensus 142 -~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~-------~~~-~-----------------~~~~~~ivQe~I~ 195 (389)
T PRK06849 142 -AIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALK-------ELP-I-----------------SKDNPWVMQEFIQ 195 (389)
T ss_pred -HHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhc-------ccc-c-----------------CCCCCeEEEEEec
Confidence 1233333332599999999999999999987733222 110 0 1135699999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcccccccccc--CCCceeEcCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ--GGTGINLTPPPASIM 869 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~--~g~~~~~~P~~~~~l 869 (953)
|. |+++..+..+|...... . |...|. ++......|..
T Consensus 196 G~-------------------------e~~~~~~~~~G~v~~~~-~-----------~~~~~~~~~~~~~~~~~~~---- 234 (389)
T PRK06849 196 GK-------------------------EYCSYSIVRSGELRAHS-C-----------YKPEYCAGSGAQIAFQPIN---- 234 (389)
T ss_pred CC-------------------------eEEEEEEEECCEEEEEE-E-----------eeccccCCCCceeEeEECC----
Confidence 97 77776666555533211 0 011111 12222233322
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGl 918 (953)
.+++++.+++++++||+.|++.+||+++. +|++|+||||++++-
T Consensus 235 ----~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g~~~~iEiNpR~~~ 278 (389)
T PRK06849 235 ----HPRIEEFVTHFVKELNYTGQISFDFIETE-NGDAYPIECNPRTTS 278 (389)
T ss_pred ----cHHHHHHHHHHHHhcCceeEEEEEEEECC-CCCEEEEEecCCCCc
Confidence 24788999999999999999999999984 799999999987763
|
|
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=163.67 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=93.4
Q ss_pred hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 203 ~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
|.||..+.++|+++|||+|++.++.+.+. +.+++++++ ++|+|+||..++.|.||.++++.+++...+....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~----~~~~~~~~~----~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEE----AKEFIEELG----GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFK 72 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHH----HHHHHHHH------SSEEEE-SB-------EEEESHCHHHHHHH---
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHH----HHHHHHHhc----CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHH
Confidence 56999999999999999999999876542 344444321 6899999999999999999999988765544321
Q ss_pred hcCCCCcEEEeccCCCC--eEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC
Q 002207 283 LEGIDDRVVVELFLEGG--SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360 (953)
Q Consensus 283 ~~~~~~~vlVEefI~Gg--~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa 360 (953)
.....+++|+||+.. ++++|.|++ +. .+. . +.... .--||+..+..++. ..|.
T Consensus 73 --~~~~~~~~Q~fI~~~~g~d~Rv~Vig----~~--vv~--a--~~r~~----------~~~d~r~n~~~g~~---~~~~ 127 (190)
T PF08443_consen 73 --RLENPILVQEFIPKDGGRDLRVYVIG----GK--VVG--A--YRRSS----------PEGDFRTNLSRGGK---VEPY 127 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEET----TE--EEE--E--EE-------------------------------EE-
T ss_pred --hccCcceEeccccCCCCcEEEEEEEC----CE--EEE--E--EEEec----------CcccchhhhccCce---EEEe
Confidence 245688999999642 699999994 21 221 1 11111 11255655554442 2344
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHh
Q 002207 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440 (953)
Q Consensus 361 ~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~ 440 (953)
.+++ ++.+.|.++.++||+. ++.||++ +.++.+||+|||+.||+... .+.+
T Consensus 128 ~l~~----e~~~~a~~~~~~lgl~-~~giDi~------------------~~~~~~~v~EvN~~~~~~~~------~~~~ 178 (190)
T PF08443_consen 128 DLPE----EIKELALKAARALGLD-FAGIDIL------------------DTNDGPYVLEVNPNPGFRGI------EEAT 178 (190)
T ss_dssp ---H----HHHHHHHHHHHHTT-S-EEEEEEE------------------EETTEEEEEEEETT---TTH------HHHH
T ss_pred cCCH----HHHHHHHHHHHHhCCC-EEEEEEE------------------ecCCCeEEEEecCCchHhHH------HHHH
Confidence 5665 4578899999999985 9999953 34556999999999998752 2467
Q ss_pred CCCHHHHH
Q 002207 441 GFSHSNIL 448 (953)
Q Consensus 441 G~s~~~ll 448 (953)
|++..+.+
T Consensus 179 g~~i~~~i 186 (190)
T PF08443_consen 179 GIDIAEEI 186 (190)
T ss_dssp ---HHHHH
T ss_pred CcCHHHHH
Confidence 88754433
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=162.24 Aligned_cols=174 Identities=22% Similarity=0.325 Sum_probs=92.3
Q ss_pred hcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHH
Q 002207 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753 (953)
Q Consensus 674 ~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~ 753 (953)
+.||..+.++ |+++|||+|++.++.+.+ .+.++.++++++|+|+||..++++.||.++++.+++..+.+
T Consensus 1 a~dK~~~~~~---l~~~gipvP~t~~~~~~~--------~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 1 AEDKLLTLQL---LAKAGIPVPETRVTNSPE--------EAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLD 69 (190)
T ss_dssp -HBHHHHHHH---HHHTT-----EEEESSHH--------HHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH
T ss_pred CCCHHHHHHH---HHHCCcCCCCEEEECCHH--------HHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHH
Confidence 3599999998 999999999999887643 23445556634999999999999999999999999886433
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCcee
Q 002207 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 833 (953)
Q Consensus 754 al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~ 833 (953)
++... ...+++|+||+.. .| +|+.|.|+++.
T Consensus 70 ~~~~~----------------------~~~~~~Q~fI~~~------------------~g----~d~Rv~Vig~~----- 100 (190)
T PF08443_consen 70 AFKRL----------------------ENPILVQEFIPKD------------------GG----RDLRVYVIGGK----- 100 (190)
T ss_dssp ---------------------------TTT-EEEE----S------------------S-------EEEEEETTE-----
T ss_pred HHHhc----------------------cCcceEeccccCC------------------CC----cEEEEEEECCE-----
Confidence 32211 4678999999864 01 38999999875
Q ss_pred eCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeC
Q 002207 834 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913 (953)
Q Consensus 834 ~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEIN 913 (953)
+...++..... -+|....+.|.. ..|.. ++ +++++.|.+++++||+. ++.||++-+ ++++||+|||
T Consensus 101 vv~a~~r~~~~--~d~r~n~~~g~~--~~~~~---l~----~e~~~~a~~~~~~lgl~-~~giDi~~~--~~~~~v~EvN 166 (190)
T PF08443_consen 101 VVGAYRRSSPE--GDFRTNLSRGGK--VEPYD---LP----EEIKELALKAARALGLD-FAGIDILDT--NDGPYVLEVN 166 (190)
T ss_dssp EEEEEE----------------------EE-----------HHHHHHHHHHHHHTT-S-EEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEEEEecCc--ccchhhhccCce--EEEec---CC----HHHHHHHHHHHHHhCCC-EEEEEEEec--CCCeEEEEec
Confidence 33333322222 134444443432 22322 23 46788999999999986 999996554 4679999999
Q ss_pred CCCCCCCC
Q 002207 914 TVPGMTPS 921 (953)
Q Consensus 914 t~PGlt~~ 921 (953)
+.||+...
T Consensus 167 ~~~~~~~~ 174 (190)
T PF08443_consen 167 PNPGFRGI 174 (190)
T ss_dssp TT---TTH
T ss_pred CCchHhHH
Confidence 99999864
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=161.50 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=83.5
Q ss_pred hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 203 ~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
|.||+++.+.|+++|||+|..+..... ....+|+|+||..|.||.||.++++.+++.....
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~----------------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~--- 61 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEP----------------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN--- 61 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EES----------------S--SSSEEEEESS-------B--SS--TTE-------
T ss_pred CCCHHHHHHHHHccCCCCCCccccccc----------------cccCCcEEEEeCCCCCCCCeEEECCchhhccccc---
Confidence 679999999999999999933222111 1246799999999999999999999887543322
Q ss_pred hcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCC
Q 002207 283 LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362 (953)
Q Consensus 283 ~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l 362 (953)
...++|+||+| .++++.++.++ +....+...+-.+.. ...-| .|. ....|+..
T Consensus 62 -----~~~i~Qe~i~G-~~~Sv~~l~~~----~~~~~l~~~rq~i~~--------~~~~~----~~~-----G~~~~~~~ 114 (161)
T PF02655_consen 62 -----KLRIVQEFIEG-EPYSVSFLASG----GGARLLGVNRQLIGN--------DDGRF----RYC-----GGIVPADT 114 (161)
T ss_dssp --------EEEE---S-EEEEEEEEE-S----SSEEEEEEEEEEEET------------T----EEE-----EEEES---
T ss_pred -----cceEEeeeeCC-EEeEEEEEEeC----CceEEEEechHhhcc--------cccee----eec-----ccccccCC
Confidence 12299999998 99999999643 223333333222211 00001 121 12345543
Q ss_pred CHHHHHHHHHHHHHHHHHh-CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 363 PIVVINSIREGASLLFQRL-GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 363 ~~~~~~~i~~~a~~~~~aL-g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
+ ...++++++.+++++| |+.|+..|||++ + ++.+||+||||+++
T Consensus 115 ~--~~~~~~~~~~~i~~~l~gl~G~~giD~I~-----------------~-~~~~~viEINPR~t 159 (161)
T PF02655_consen 115 P--LKEEIIELARRIAEALPGLRGYVGIDFIL-----------------D-DGGPYVIEINPRFT 159 (161)
T ss_dssp ---HHHHHHHHHHHHHTTSTT--EEEEEEEEE-----------------S-S-SEEEEEEESS--
T ss_pred c--hHHHHHHHHHHHHHHcCCCeeeEeEEEEE-----------------e-CCcEEEEEEcCCCC
Confidence 3 3788999999999999 999999999986 3 47799999999886
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-15 Score=167.32 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=155.0
Q ss_pred EEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHH
Q 002207 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 718 (953)
Q Consensus 639 f~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~ 718 (953)
+.+.||....--....+ +.+++|+.| +..+..++.||..+|++ |+++|||+|+++ ...
T Consensus 88 iiIp~gs~v~y~~~d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~---L~~aGIp~p~~~--~~~--------------- 145 (358)
T PRK13278 88 ILIPHGSFVAYLGLENV-EKFKVPMFG-NREILRWEADRDKERKL---LEEAGIRIPRKY--ESP--------------- 145 (358)
T ss_pred EEEeCCCcceeecHHHH-HHCCCCcCC-CHHHHHHhcCHHHHHHH---HHHcCCCCCCEe--CCH---------------
Confidence 45566765542234555 489999777 67789999999999998 899999999962 221
Q ss_pred hhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccc
Q 002207 719 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798 (953)
Q Consensus 719 ~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~ 798 (953)
+.+ .||+||||..+.+|.|++++++.+|+.+ +++..... +.++ ..+.++|||||.|.
T Consensus 146 ~~i-~~PvIVKp~~g~ggkGv~i~~s~~El~~---~~~~l~~~---~~~~-----------~~~~~iIEEfI~G~----- 202 (358)
T PRK13278 146 EDI-DRPVIVKLPGAKGGRGYFIAKSPEEFKE---KIDKLIER---GLIT-----------EVEEAIIQEYVVGV----- 202 (358)
T ss_pred HHc-CCCEEEEeCCCCCCCCeEEeCCHHHHHH---HHHHHHhc---cccC-----------CCCeEEEEecCCCc-----
Confidence 134 5899999999999999999999999875 45554321 0000 14789999999998
Q ss_pred cccccccchhhhhcCCCceeEEEEEEEcC--CCCceeeCceEEEecC-Ccccccccccc----CCC---ceeEcCCCCCC
Q 002207 799 SQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKES-GDILSLEEKFQ----GGT---GINLTPPPASI 868 (953)
Q Consensus 799 ~~~~~~~~~~~~~~g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~~~-~~~~d~~~Ky~----~g~---~~~~~P~~~~~ 868 (953)
|+++.++-. ++....+....++..+ ..++..-++-+ ... .....|+.
T Consensus 203 --------------------e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~--- 259 (358)
T PRK13278 203 --------------------PYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV--- 259 (358)
T ss_pred --------------------EEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc---
Confidence 777776653 2332222222222221 12222211110 000 01124554
Q ss_pred CCHHHHHHHHHHHHHHHHH----c--CCcceEEEEEEEEcCCCcEEEEeeCCCC-CCCC----CchHHHHHHhcCCCCCH
Q 002207 869 MSTEALDKCKQRIELIANA----L--QLEGFSRIDAFVNVDNGEVLIIEVNTVP-GMTP----STVLIHQALSEQPPMYP 937 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~a----L--g~~G~ariDf~v~~~~g~~~viEINt~P-Glt~----~S~l~~~a~~~~~~~yp 937 (953)
+.+.++.++.+.++++.++ + ++.|...+|+++++ ++++||+|||+++ |=|. .|++..... +-+|+.
T Consensus 260 ~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~ggtn~~~~~s~y~~~~~--~~~~~~ 336 (358)
T PRK13278 260 LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTD-NLEIVVFEISARIVAGTNLYMNGSPYSYLYW--DEPMSM 336 (358)
T ss_pred chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcC-CCCEEEEEEeCcccCCccceeCCCcchheec--CCcccH
Confidence 5788888999999988888 4 77899999999985 7899999999988 6333 343222111 112333
Q ss_pred HHHHHHHHHHHhh
Q 002207 938 HQFFRKVLDLGSE 950 (953)
Q Consensus 938 ~~l~~~li~~a~~ 950 (953)
-.-+.+=|++|++
T Consensus 337 grria~ei~~a~~ 349 (358)
T PRK13278 337 GRRIAREIKLALE 349 (358)
T ss_pred HHHHHHHHHHHHh
Confidence 3445555677765
|
|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=153.60 Aligned_cols=163 Identities=26% Similarity=0.277 Sum_probs=120.2
Q ss_pred HHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC-CCCCcceEEeCCcccHHHHHHHHHHHHhhCCCC
Q 002207 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR-DGCSTGVARLCCAEDLTVYVKALEECLLRIPPN 765 (953)
Q Consensus 687 l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~-~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~ 765 (953)
|+++|||||+|..+.+.+ .+..+.+++ +||+|+|+.. +..++|..++++.+|+.. +.+.. .
T Consensus 1 l~~~gip~~~~~~i~~~~--------~l~~a~~~i-G~P~vlK~~~~GYDGkGq~~i~~~~dl~~---a~~~~-~----- 62 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE--------DLEEAAESI-GFPAVLKTRRGGYDGKGQFVIRSEEDLEK---AWQEL-G----- 62 (172)
T ss_dssp HHHTT--B-EEEEESSHH--------HHHHHHHHH-TSSEEEEESSSSCTTTTEEEESSGGGHHH---HHHHT-T-----
T ss_pred CcccCCCCCCeEEECCHH--------HHHHHHHHc-CCCEEEEccCcCcCCCccEEECCHHHHHH---HHHhc-C-----
Confidence 578999999999998743 355666788 6999999654 557899999999999985 33332 1
Q ss_pred CcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCc
Q 002207 766 SFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845 (953)
Q Consensus 766 ~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~ 845 (953)
...+|+|+||+-. +|+++-+..+..+.....|..+....++
T Consensus 63 ---------------~~~~ilE~~v~f~------------------------~EiSvivaR~~~G~~~~yp~~en~~~~~ 103 (172)
T PF02222_consen 63 ---------------GGPCILEEFVPFD------------------------REISVIVARDQDGEIRFYPPVENVHRDG 103 (172)
T ss_dssp ---------------TSCEEEEE---ES------------------------EEEEEEEEEETTSEEEEEEEEEEEEETT
T ss_pred ---------------CCcEEEEeccCCc------------------------EEEEEEEEEcCCCCEEEEcCceEEEECC
Confidence 5789999999986 6999999987655444556655443333
Q ss_pred cccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCc-EEEEeeCCCCCCCC
Q 002207 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE-VLIIEVNTVPGMTP 920 (953)
Q Consensus 846 ~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~-~~viEINt~PGlt~ 920 (953)
+++ ..+.|++ +++++.++++++|.+++++|+..|+.-|+||++. +|+ +||+||.|+|--+.
T Consensus 104 il~----------~s~~Pa~---i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 104 ILH----------ESIAPAR---ISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp EEE----------EEEESCS---S-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEE----------EEECCCC---CCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 332 3367887 6899999999999999999999999999999996 687 99999999886543
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=183.87 Aligned_cols=211 Identities=16% Similarity=0.078 Sum_probs=129.1
Q ss_pred EECCCHHHHHH-hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC-
Q 002207 192 FVGTGSRACRQ-AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY- 269 (953)
Q Consensus 192 yvGs~~~a~~i-~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~- 269 (953)
+++.++..+.. |.||..||++|+++|||||++..+.+.+. +...+.. ..+||+||||..+++|+||+++.
T Consensus 474 ~t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~e~----a~~~~~~----~~g~PvVVKP~~g~~G~GV~~~~~ 545 (752)
T PRK02471 474 MTSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEE----ALADYSL----FADKAIVVKPKSTNFGLGISIFKE 545 (752)
T ss_pred ccCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCHHH----HHHHHHH----hcCCCEEEEECCCCCcCCeEEecC
Confidence 34555554444 55999999999999999999998865432 2122211 14789999999999999999864
Q ss_pred --CHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEE---eccCccccc------cC
Q 002207 270 --GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL---QFQGSVDVR------EK 338 (953)
Q Consensus 270 --~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~---~~~~~~~~~------~~ 338 (953)
+.+++.++...++ .+++.+||||||+| +||+|.|++ +. .+ ...+++. ..+|...|. ..
T Consensus 546 ~~~~eel~~A~~~a~--~~~~~vlVEEfI~G-~E~Rv~Vig----gk--vv--aa~~R~pa~V~GDG~~tI~eLi~~~n~ 614 (752)
T PRK02471 546 PASLEDYEKALEIAF--REDSSVLVEEFIVG-TEYRFFVLD----GK--VE--AVLLRVPANVVGDGIHTVRELVAQKNQ 614 (752)
T ss_pred cCCHHHHHHHHHHHH--hcCCcEEEEecccC-CEEEEEEEC----CE--EE--EEEEEeCCccccCcHhhHHHHHHHhcC
Confidence 5677766665544 36778999999998 999999994 21 11 1111111 111111110 00
Q ss_pred Cc----c----------------------cccccCccCCCceEEE----------cCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 339 DA----I----------------------FNYRRKYLPTQQVAYH----------TPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 339 ~~----~----------------------~dy~~Ky~~~~~~~~~----------~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+. . ++++.--..|. ..+. .+.++++.+.....++|.++++++|
T Consensus 615 ~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge-~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~ig 693 (752)
T PRK02471 615 DPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGE-IVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALG 693 (752)
T ss_pred CccccCcccccccccccCHHHHHHHHHcCCCccccCCCCC-EEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcC
Confidence 00 0 00000000011 1111 1124566777888999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccC-CcEEEEeecCCCCCCCcchHH
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQTSFLF 434 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~d-G~~~~lEIN~~PG~t~~S~~p 434 (953)
+. ++.||+++-+-+ .. .+++ .+..|+|||..||+.-+ .||
T Consensus 694 l~-~~GvDii~~di~--------~p--~~~~~~~~~IiEvN~~P~l~mH-~~P 734 (752)
T PRK02471 694 AK-ICGVDLIIPDLT--------QP--ASPEHPNYGIIELNFNPAMYMH-CFP 734 (752)
T ss_pred CC-EEEEEEEeCCCc--------cc--ccccCCCeEEEEecCCCchhhc-cCc
Confidence 87 889999862110 00 0112 14678999999998653 445
|
|
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=186.32 Aligned_cols=198 Identities=22% Similarity=0.184 Sum_probs=132.1
Q ss_pred EeCCChHHHHHhc-ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE
Q 002207 663 YTGPGVMASKTCM-DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741 (953)
Q Consensus 663 y~G~~~~as~l~~-DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~ 741 (953)
+++.+...+..++ ||..||++ |+++|||||++..+.+.+ +....+ ..+.+||+||||.++++|.||++
T Consensus 474 ~t~~~s~~s~~~~~DK~~tk~l---L~~~GIpvP~~~~~~~~e-------~a~~~~-~~~~g~PvVVKP~~g~~G~GV~~ 542 (752)
T PRK02471 474 MTSKDNYISPLIMENKVVTKKI---LAEAGFPVPAGDEFTSLE-------EALADY-SLFADKAIVVKPKSTNFGLGISI 542 (752)
T ss_pred ccCCCHHHHHHHhhCHHHHHHH---HHHCCcCCCCEEEEcCHH-------HHHHHH-HHhcCCCEEEEECCCCCcCCeEE
Confidence 5677777555555 99999999 999999999998886432 222222 33326999999999999999999
Q ss_pred eCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEE
Q 002207 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 821 (953)
Q Consensus 742 v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eit 821 (953)
+.+.++.+++.+|++.++++ +..+||||||+|+ |++
T Consensus 543 ~~~~~~~eel~~A~~~a~~~-------------------~~~vlVEEfI~G~-------------------------E~R 578 (752)
T PRK02471 543 FKEPASLEDYEKALEIAFRE-------------------DSSVLVEEFIVGT-------------------------EYR 578 (752)
T ss_pred ecCcCCHHHHHHHHHHHHhc-------------------CCcEEEEecccCC-------------------------EEE
Confidence 88777777777888887755 5779999999998 666
Q ss_pred EEEEcCCCCceeeCceEEEec----CCcc-----------------------------------------ccccccccCC
Q 002207 822 VGVIGKCGSMHSLMPSVTVKE----SGDI-----------------------------------------LSLEEKFQGG 856 (953)
Q Consensus 822 v~vl~~~~~~~~~~p~~~i~~----~~~~-----------------------------------------~d~~~Ky~~g 856 (953)
|.|+++. +.+.++..+ .++. |++++=-..|
T Consensus 579 v~Viggk-----vvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~G 653 (752)
T PRK02471 579 FFVLDGK-----VEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKG 653 (752)
T ss_pred EEEECCE-----EEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCC
Confidence 6666432 111111100 0000 0000000011
Q ss_pred CceeEcC-------CCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC-----CC--cEEEEeeCCCCCCCCC
Q 002207 857 TGINLTP-------PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD-----NG--EVLIIEVNTVPGMTPS 921 (953)
Q Consensus 857 ~~~~~~P-------~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~-----~g--~~~viEINt~PGlt~~ 921 (953)
....+.. ....++++.+...++++|.++++++|+. ++.||+++..- .. ...|||||..|||.-+
T Consensus 654 e~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 654 EIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred CEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 1111111 0011356788899999999999999988 88899998631 11 5678999999999654
|
|
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=183.06 Aligned_cols=210 Identities=18% Similarity=0.167 Sum_probs=130.1
Q ss_pred CHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCC---HH
Q 002207 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VI 272 (953)
Q Consensus 196 ~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~---~~ 272 (953)
+..+..+|+||..||++|+++|||||++..+.+.+.. ...+..+ .++|+||||.++++|+||+++.+ .+
T Consensus 466 S~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a----~~~~~~~----~g~PVVVKP~~g~~G~GVsi~~~~~~~e 537 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALA----LEAFSLF----ENKAIVVKPKSTNYGLGITIFKNGFTLE 537 (737)
T ss_pred cHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHH----HHHHHHh----cCCCEEEeeCCCCCcCCeEEecCcCCHH
Confidence 4456689999999999999999999999988664321 1112111 26799999999999999999876 56
Q ss_pred HHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEE-ecceEEEEeccCccccc------cCC------
Q 002207 273 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV-LLPTEVELQFQGSVDVR------EKD------ 339 (953)
Q Consensus 273 el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~-l~~~ei~~~~~~~~~~~------~~~------ 339 (953)
++.++...++ .++..+|||+||+| +||+|.|++ +...+++ ..|..|+ .+|...|. ..+
T Consensus 538 el~~Al~~A~--~~~~~VLVEefI~G-~EyRv~VIg----~kvvaa~~R~Pa~Vi--GDG~~TI~eLI~~kN~~p~Rg~~ 608 (737)
T TIGR01435 538 DFQEALNIAF--SEDSSVIIEEFLPG-TEYRFFVLN----DKVEAVLLRVPANVT--GDGIHTVRELVAEKNTDPLRGTD 608 (737)
T ss_pred HHHHHHHHHH--hcCCeEEEEecccC-CEEEEEEEC----CeEEEEEEECCCCEE--ECCHHHHHHHHHHhccCcccCCc
Confidence 6665555444 36778999999998 999999995 2211111 1111121 22221110 000
Q ss_pred ------cc-------------cccccCccCCCceEEE----------cCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 340 ------AI-------------FNYRRKYLPTQQVAYH----------TPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 340 ------~~-------------~dy~~Ky~~~~~~~~~----------~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
.+ |+.+.--..|. ..+. .+.++++++-...+++|.++++++|+. ++.||
T Consensus 609 ~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge-~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVD 686 (737)
T TIGR01435 609 HRKPLEKITGPEETLMLKEQGLTIDSIPKKEQ-IVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVD 686 (737)
T ss_pred ccCCcccccchHHHHHHHHcCCCccccCCCCC-EEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEE
Confidence 00 00000000010 0000 112456677778899999999999996 99999
Q ss_pred eeecCCCCccccccccccCcccC-CcEEEEeecCCCCCCCcchHHH
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~d-G~~~~lEIN~~PG~t~~S~~p~ 435 (953)
+++-+.+ .. .+++ ....|||+|..|||..+ .||.
T Consensus 687 ii~~di~--------~p--~~~~~~~~~iiEvN~~P~l~mH-~~P~ 721 (737)
T TIGR01435 687 LIIPDET--------IP--DTDKHAIWGVIEANFNPAMHMH-CFPY 721 (737)
T ss_pred EEecCCC--------CC--ccccccceEEEEEcCCcchhhh-cCCC
Confidence 9862110 00 0111 23678999999998754 3453
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=161.36 Aligned_cols=225 Identities=16% Similarity=0.225 Sum_probs=166.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
..+|++|+-=.-.. .. -|-..|+..|||..||+..++++-.+|.++|++ |+++||||+.|..+++.+
T Consensus 62 ~~idl~vVGPE~pL-~~-GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~f---m~k~~IPta~y~~f~~~e-------- 128 (428)
T COG0151 62 KNVDLVVVGPEAPL-VA-GVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDF---MKKYGIPTAEYEVFTDPE-------- 128 (428)
T ss_pred cCCCEEEECCcHHH-hh-hhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHH---HHHcCCCcccccccCCHH--------
Confidence 46788886421111 12 355788999999999999999999999999999 999999999999887432
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.......+. +.|++|||.....+.||.++.+.++.. +++.+.+.. +.+. ....+++||||++|
T Consensus 129 ~a~ayi~~~-g~piVVKadGLaaGKGV~V~~~~eeA~---~a~~~~l~~---~~fg----------~~g~~VVIEEfL~G 191 (428)
T COG0151 129 EAKAYIDEK-GAPIVVKADGLAAGKGVIVAMTLEEAE---AAVDEMLEG---NAFG----------SAGARVVIEEFLDG 191 (428)
T ss_pred HHHHHHHHc-CCCEEEecccccCCCCeEEcCCHHHHH---HHHHHHHhh---cccc----------CCCCcEEEEecccc
Confidence 245566778 699999999999999999998755544 466665532 0111 11367999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
. |+|+-++.++.....+++. ......|+-+.--+.|.+..+.|+|. ++++
T Consensus 192 e-------------------------E~S~~a~~DG~~v~p~p~a---QDhKra~dgD~GPNTGGMGaysp~P~--~t~e 241 (428)
T COG0151 192 E-------------------------EFSLQAFVDGKTVIPMPTA---QDHKRAYDGDTGPNTGGMGAYSPAPF--ITDE 241 (428)
T ss_pred e-------------------------EEEEEEEEcCCeEEECccc---cccccccCCCCCCCCCCCCCCCCCCC--CCHH
Confidence 8 9999999986554444322 22344666665556666677888875 7898
Q ss_pred HHHHHH-HHHHHHHHHcC-----CcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 873 ALDKCK-QRIELIANALQ-----LEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 873 ~~~~i~-~~a~~~~~aLg-----~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+.+++. ++.+...+.|. ..|+....|++++ +| ++|||.|.+=|=-
T Consensus 242 ~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~-~G-PkViEfN~RFGDP 292 (428)
T COG0151 242 VVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTA-DG-PKVIEFNARFGDP 292 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcC-CC-cEEEEEecccCCh
Confidence 888877 66666666552 4688999999995 56 9999999876643
|
|
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=159.36 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=185.6
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCC--CCCccccccccccccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--PADFDFKLESLAQGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (953)
+.++|+.|+ -.||.+|++-.+.+|++.+++- ..|+.- .|... ..|--+.++ .|..+
T Consensus 16 ~~~~i~t~~----------SHsal~i~~gAk~egf~t~~v~--~~~r~~------~Y~~f~~~~d~~i~~~----~f~~~ 73 (366)
T PRK13277 16 DKVKIGVLA----------SHSALDVFDGAKDEGFRTIAVC--QKGRER------TYREFKGIVDEVIVLD----KFKDI 73 (366)
T ss_pred cccEEEEEe----------cchHHHHhccHHhcCCcEEEEE--cCCCcc------hhhhhccccceEEEec----chhhh
Confidence 457999997 2479999999999999987653 333210 11000 001000011 01100
Q ss_pred --hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHH-HHhccHHHHHHHHHHCCCCCCCeEEecCCc
Q 002207 154 --SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC-RQAFDKYDASLEMSKQGFITVPSFLLQGSE 230 (953)
Q Consensus 154 --~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~-~i~~DK~~~k~~l~~~Giptp~~~~~~~~~ 230 (953)
.+..+.+... + ++.+-||.+-+--.+..+...+.+|+.|+...-- .--.||..+.++|+++||++|+.+.- .
T Consensus 74 ~~~~~~~~l~~~-n-~i~iPh~sf~~y~g~~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~~--p- 148 (366)
T PRK13277 74 LSEKVQDELREE-N-AIFVPNRSFAVYVGYDAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPYPKLFKD--P- 148 (366)
T ss_pred hhHHHHHHHHHC-C-eEEecCCCeEEEecHHHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCCceeecC--c-
Confidence 1222223222 2 3445578888777777776689999999864432 22368888877999999999987751 1
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCC--ceeEEEeCCHHHHHHHHHHhHhc-----CCCCcEEEeccCCCCeEEE
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGS--SIGVTVAYGVIDSLKKAKGIILE-----GIDDRVVVELFLEGGSEFT 303 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs--S~GV~~v~~~~el~~~a~~~~~~-----~~~~~vlVEefI~Gg~E~t 303 (953)
+++.+||||||..+.+ |+|+++|+|.+|+..++.+.... ....+++|||||.| .||+
T Consensus 149 ---------------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~ 212 (366)
T PRK13277 149 ---------------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFN 212 (366)
T ss_pred ---------------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEE
Confidence 1267899999999999 99999999999988777654321 11245679999998 9999
Q ss_pred EEEEEeCCCCccccEEecce-EEEEeccCccccccCCcccccccCcc------CCCceEEEcCCCCCHHHHHHHHHHHHH
Q 002207 304 AIVLDVGSGFDCHPVVLLPT-EVELQFQGSVDVREKDAIFNYRRKYL------PTQQVAYHTPPRFPIVVINSIREGASL 376 (953)
Q Consensus 304 v~Vl~~~~g~~~~~v~l~~~-ei~~~~~~~~~~~~~~~~~dy~~Ky~------~~~~~~~~~Pa~l~~~~~~~i~~~a~~ 376 (953)
+.++-+.- ++....+.+- +++.. -+++...-++-. +.....-+.|..+.+...+.+.+++.+
T Consensus 213 ~d~F~s~l--~g~ve~l~id~R~esn---------~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger 281 (366)
T PRK13277 213 FNYFYSPI--RDRLELLGIDRRIQSN---------LDGFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEK 281 (366)
T ss_pred EEEEEecc--CCcEEEEEEeeccccc---------cccccccChhhhhhcccCCceEEEcCccccchHHHHHHHHHHHHH
Confidence 99995311 1112221111 11100 122222211110 000011137888888899999999999
Q ss_pred HHHHhC------CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC-CCcchHHHHHHHhCCCHHHHH
Q 002207 377 LFQRLG------LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQTSFLFQQASKVGFSHSNIL 448 (953)
Q Consensus 377 ~~~aLg------~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~-t~~S~~p~~a~~~G~s~~~ll 448 (953)
+.++++ +.|...+|+++ ++|+++|++|||++-|- |+.+ ..+|-+|+.++
T Consensus 282 ~v~a~~~~~~pg~iGpf~lQ~iv-----------------~~d~~~~V~EInpR~gGGtnl~------~~aGs~y~~l~ 337 (366)
T PRK13277 282 FVEATKELYPPGIIGPFTLQTIV-----------------TPDLDFVVYDVAPRIGGGTNVY------MGVGSPYSKLY 337 (366)
T ss_pred HHHHhhhhcCcccccceEEEEEE-----------------cCCCcEEEEEEcCCcCCCccce------eecCCCcHHHH
Confidence 999976 68999999886 67899999999997653 3332 24566666554
|
|
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=178.88 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=131.0
Q ss_pred CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEE-eCCHHH
Q 002207 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVID 273 (953)
Q Consensus 195 s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~-v~~~~e 273 (953)
+++.+..+|.||..+|++|+++|||+|++..+.+.+ ++.+++++ .+ |+||||..|++|.||++ +++.++
T Consensus 287 ~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~~----~~~~~~~~-----~G-~vVVKP~~G~~G~Gv~v~v~~~~e 356 (547)
T TIGR03103 287 TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGE----AVEAFLAE-----HG-AVVVKPVRGEQGKGISVDVRTPDD 356 (547)
T ss_pred CCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH----HHHHHHHH-----hC-CEEEEECCCCCCcCeEEecCCHHH
Confidence 478899999999999999999999999999876533 23333322 33 79999999999999997 899998
Q ss_pred HHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec---ceEEEEeccCccccc--------------
Q 002207 274 SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL---PTEVELQFQGSVDVR-------------- 336 (953)
Q Consensus 274 l~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~---~~ei~~~~~~~~~~~-------------- 336 (953)
+.+...... .++..+|||+||+| +|+++.|++ + ++++.. +..| ..++...+.
T Consensus 357 L~~a~~~a~--~~~~~vlvEe~i~G-~d~Rv~Vig----g--~vvaa~~R~~~~V--~GDG~~ti~~Lie~~n~~~~~~~ 425 (547)
T TIGR03103 357 LEAAIAKAR--QFCDRVLLERYVPG-EDLRLVVID----F--EVVAAAVRRPPEV--IGDGRSSIRDLIEKQSRRRAAAT 425 (547)
T ss_pred HHHHHHHHH--hcCCcEEEEEeccC-CeEEEEEEC----C--EEEEEEEecCcEE--EeCCccCHHHHHHHHhcCccCCC
Confidence 776655443 25678999999998 999999994 2 233211 1111 111110000
Q ss_pred ---------------------------cCCc--ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 337 ---------------------------EKDA--IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 337 ---------------------------~~~~--~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+.++ +..+.+....|+ +. .++++++...++++|.++++++|+. ++
T Consensus 426 ~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg-~~----~dvtd~~~~~~~~~A~~aa~~~gl~-~~ 499 (547)
T TIGR03103 426 GGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGG-TI----HDVTEQLHPDLREAAERAARALDIP-VV 499 (547)
T ss_pred CCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCC-ee----EecccccCHHHHHHHHHHHHHhCCC-eE
Confidence 0000 001122222232 11 1345566677799999999999997 99
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
.||+++.+ .......|||+|.+|||..+
T Consensus 500 GvD~i~~~---------------~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 500 GIDFLVPD---------------VTGPDYVIIEANERPGLANH 527 (547)
T ss_pred EEEEEecc---------------CCCCCeEEEEecCCcccccc
Confidence 99987621 01234799999999999876
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=172.87 Aligned_cols=303 Identities=15% Similarity=0.130 Sum_probs=222.6
Q ss_pred eEEEEe-c----CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 79 RVGLIC-G----GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 79 kV~vl~-G----G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
-+.||. | |.|.|+|.. |-+.++.||+.|+..+.+..+++- ..++....-.+|.+.+. +.+.
T Consensus 920 g~mVlGsGvYrIGSSVEFDwc---aV~~~rtLr~~g~kTimvNyNPET---------VSTDyDecdrLYFeeis--~E~v 985 (1435)
T KOG0370|consen 920 GVMVLGSGVYRIGSSVEFDWC---AVGCARTLRKLGKKTIMVNYNPET---------VSTDYDECDRLYFEEIS--YERV 985 (1435)
T ss_pred ceEEEcccceecccceeechh---hhhHHHHHHHcCCceEEEecCccc---------ccCchHHHhhHhHhhhh--hhhh
Confidence 366663 4 889999986 788899999999999877655541 11111000011111110 1011
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
-++.+ .++..-++..++|+...| |+--|...|+...|+++..+-.|.|++.+.++|.+.||..|+|..+.+-++
T Consensus 986 mDiYe--~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~e-- 1059 (1435)
T KOG0370|consen 986 MDIYE--LENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEE-- 1059 (1435)
T ss_pred hhhhh--hccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccHHH--
Confidence 11111 246888999999998876 455678889999999999999999999999999999999999988776543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
..++.+ .++|||+|+|..--|+-.+.++++.+|+......+..-+.+..|++-+||+|++|+.+..+. .
T Consensus 1060 --A~~F~~-----~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa----~ 1128 (1435)
T KOG0370|consen 1060 --AKKFAE-----KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVA----S 1128 (1435)
T ss_pred --HHHHHH-----hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcccceechhhhc----c
Confidence 334443 48899999999999999999999999877665554433567899999999999999999984 4
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
++..++....|.+ -.+..++|+ .....|++ ++++..++|++++.++.++|.+.|..+++|+
T Consensus 1129 ~G~~~~haiSEHv-----------------EnAGVHSGD-Atlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i 1190 (1435)
T KOG0370|consen 1129 DGKVLVHAISEHV-----------------ENAGVHSGD-ATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQII 1190 (1435)
T ss_pred CCeEEEEehhhhh-----------------hcccccCCc-eeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEE
Confidence 4555543333321 113344455 44556654 9999999999999999999999999999997
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
. +++++.+||.|.+-. -.||...+-.|.+|-++..+.|
T Consensus 1191 ~------------------k~n~lkVIECN~RaS----RSFPFvSKtlgvdfi~~At~~i 1228 (1435)
T KOG0370|consen 1191 A------------------KDNELKVIECNVRAS----RSFPFVSKTLGVDFIALATRAI 1228 (1435)
T ss_pred e------------------cCCeEEEEEeeeeee----ccccceehhcCchHHHHHHHHH
Confidence 4 677899999998654 4468787888999887776655
|
|
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-16 Score=155.18 Aligned_cols=157 Identities=22% Similarity=0.347 Sum_probs=85.6
Q ss_pred hcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHH
Q 002207 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753 (953)
Q Consensus 674 ~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~ 753 (953)
|.||..|.+. |+++|||+|......... .. .+|+|+||.++.||.||.++++.+++...
T Consensus 1 ~~dK~~~~~~---L~~~gi~~P~~~~~~~~~---------------~~-~~~~viKp~~G~Gg~~i~~~~~~~~~~~~-- 59 (161)
T PF02655_consen 1 CSDKLKTYKF---LKELGIPVPTTLRDSEPE---------------PI-DGPWVIKPRDGAGGEGIRIVDSEDELEEF-- 59 (161)
T ss_dssp -TSHHHHHHH---HTTT-S--------EESS------------------SSSEEEEESS-------B--SS--TTE----
T ss_pred CCCHHHHHHH---HHccCCCCCCcccccccc---------------cc-CCcEEEEeCCCCCCCCeEEECCchhhccc--
Confidence 7899999998 999999999333222111 12 58999999999999999999998887631
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCcee
Q 002207 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 833 (953)
Q Consensus 754 al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~ 833 (953)
+ ....++||||+|. ++++.++.+.+....
T Consensus 60 -~-------------------------~~~~i~Qe~i~G~-------------------------~~Sv~~l~~~~~~~~ 88 (161)
T PF02655_consen 60 -L-------------------------NKLRIVQEFIEGE-------------------------PYSVSFLASGGGARL 88 (161)
T ss_dssp -------------------------------EEEE---SE-------------------------EEEEEEEE-SSSEEE
T ss_pred -c-------------------------ccceEEeeeeCCE-------------------------EeEEEEEEeCCceEE
Confidence 1 1223999999997 999999998766543
Q ss_pred eCceEEEecC-CccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEEcCCCcEEEEe
Q 002207 834 LMPSVTVKES-GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 834 ~~p~~~i~~~-~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL-g~~G~ariDf~v~~~~g~~~viE 911 (953)
+......... ..- -.|.++ ..|.. ....+++.+++++++++| |+.|+..|||+++ ++++|++|
T Consensus 89 l~~~rq~i~~~~~~----~~~~G~----~~~~~-----~~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viE 153 (161)
T PF02655_consen 89 LGVNRQLIGNDDGR----FRYCGG----IVPAD-----TPLKEEIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIE 153 (161)
T ss_dssp EEEEEEEEET--------TEEEEE----EES---------HHHHHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEE
T ss_pred EEechHhhccccce----eeeccc----ccccC-----CchHHHHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEE
Confidence 3222222211 111 123322 34553 234789999999999999 9999999999997 47899999
Q ss_pred eCCCCC
Q 002207 912 VNTVPG 917 (953)
Q Consensus 912 INt~PG 917 (953)
|||+++
T Consensus 154 INPR~t 159 (161)
T PF02655_consen 154 INPRFT 159 (161)
T ss_dssp EESS--
T ss_pred EcCCCC
Confidence 998875
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=157.12 Aligned_cols=217 Identities=16% Similarity=0.190 Sum_probs=136.1
Q ss_pred CCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-c
Q 002207 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-K 251 (953)
Q Consensus 173 G~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-P 251 (953)
|-.|.|...-.+...+ ++....-++.||..|..+|+++|||||+++.+.+.+.....+.+++ ..+ |
T Consensus 11 ~~~~~~~~~~~~~~~~------N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~-------~~~~~ 77 (317)
T TIGR02291 11 GIMGMNKRNADYILRY------NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIV-------KDHPD 77 (317)
T ss_pred CccccCcchHHHHHhc------CCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHH-------ccCCC
Confidence 4445554444444443 4456678899999999999999999999888876654444444433 123 7
Q ss_pred EEEeeCCCCCceeEEEeCCHHH---------------HHHHHH----HhHhc-CCCCcEEEeccCCCC-----------e
Q 002207 252 VVVKPTRAGSSIGVTVAYGVID---------------SLKKAK----GIILE-GIDDRVVVELFLEGG-----------S 300 (953)
Q Consensus 252 vvVKP~~~gsS~GV~~v~~~~e---------------l~~~a~----~~~~~-~~~~~vlVEefI~Gg-----------~ 300 (953)
+||||..|+.|.||.++.+.++ +...+. .++.. ...+.+++|+++... +
T Consensus 78 VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~ 157 (317)
T TIGR02291 78 FVIKPAQGSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVP 157 (317)
T ss_pred EEEEECCCCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCC
Confidence 9999999999999999965432 222111 12111 112357777665432 5
Q ss_pred EEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceE-------------------EEcC--
Q 002207 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-------------------YHTP-- 359 (953)
Q Consensus 301 E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~-------------------~~~P-- 359 (953)
.+.|.++++ .+++ -+.-... .--+++.++..|+... ...|
T Consensus 158 diRV~vv~~------~~va----a~~R~~~---------~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t 218 (317)
T TIGR02291 158 DIRIIVFKG------YPVM----AMMRLPT---------RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDT 218 (317)
T ss_pred CEEEEEECC------EEEE----EEEEccC---------ccCCcccccccCCceeeeecCCCccccccccCCccccCCCc
Confidence 778888741 1221 0111000 0001122222221100 0011
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHH
Q 002207 360 ----PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 360 ----a~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~ 435 (953)
..+..+..+++.++|.++++++|| |++++|+++ +.+|.++|+|||+.|||| |+
T Consensus 219 ~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~-----------------~~~~g~~VlEVN~~Pg~t-----~~ 275 (317)
T TIGR02291 219 GKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVL-----------------DKEEGPLVLELNARPGLA-----IQ 275 (317)
T ss_pred ccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEE-----------------eCCCCEEEEEeCCCCCCC-----HH
Confidence 123445678899999999999999 899999976 456679999999999998 78
Q ss_pred HHHHhCCCH
Q 002207 436 QASKVGFSH 444 (953)
Q Consensus 436 ~a~~~G~s~ 444 (953)
.+.++|++.
T Consensus 276 ~a~~~Gl~~ 284 (317)
T TIGR02291 276 IANGAGLLP 284 (317)
T ss_pred HHHHCCCcH
Confidence 889999974
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-15 Score=148.91 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=117.7
Q ss_pred HHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCC-CCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEE
Q 002207 213 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR-AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291 (953)
Q Consensus 213 l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~-~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vl 291 (953)
|+++|||||||..+.+.++ +..... .++||+|+|++. |..+.|..++++.+|+......+ ....+|
T Consensus 1 l~~~gip~~~~~~i~~~~~----l~~a~~-----~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~----~~~~~i 67 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLED----LEEAAE-----SIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL----GGGPCI 67 (172)
T ss_dssp HHHTT--B-EEEEESSHHH----HHHHHH-----HHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT----TTSCEE
T ss_pred CcccCCCCCCeEEECCHHH----HHHHHH-----HcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc----CCCcEE
Confidence 6889999999999987653 333332 267899999655 55589999999999977555443 357899
Q ss_pred EeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHH
Q 002207 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371 (953)
Q Consensus 292 VEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~ 371 (953)
+|+||+-.+|+++.+.++.+| +....++.|-.. .++++ .....|+++++++.++++
T Consensus 68 lE~~v~f~~EiSvivaR~~~G---~~~~yp~~en~~----------~~~il-----------~~s~~Pa~i~~~~~~~a~ 123 (172)
T PF02222_consen 68 LEEFVPFDREISVIVARDQDG---EIRFYPPVENVH----------RDGIL-----------HESIAPARISDEVEEEAK 123 (172)
T ss_dssp EEE---ESEEEEEEEEEETTS---EEEEEEEEEEEE----------ETTEE-----------EEEEESCSS-HHHHHHHH
T ss_pred EEeccCCcEEEEEEEEEcCCC---CEEEEcCceEEE----------ECCEE-----------EEEECCCCCCHHHHHHHH
Confidence 999998779999999986543 345555554321 11111 234589999999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCc-EEEEeecCCCCCCC
Q 002207 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGT-ILFTDINLISGMEQ 429 (953)
Q Consensus 372 ~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~-~~~lEIN~~PG~t~ 429 (953)
++|.++.++|++.|...|+||+ +++|+ +||+||.|+|.-+.
T Consensus 124 ~ia~~i~~~l~~vGv~~VE~Fv-----------------~~~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 124 EIARKIAEALDYVGVLAVEFFV-----------------TKDGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp HHHHHHHHHHTSSEEEEEEEEE-----------------ETTSTEEEEEEEESS--GGG
T ss_pred HHHHHHHHHcCcEEEEEEEEEE-----------------ecCCCEEEEEeccCCccCcc
Confidence 9999999999999999999987 67887 99999999997443
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=172.82 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=126.7
Q ss_pred ChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE-eCCc
Q 002207 667 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR-LCCA 745 (953)
Q Consensus 667 ~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~-v~~~ 745 (953)
++.+..+|.||..||++ |+++|||||++..+.+.+ .+.++.+++ + |+||||+.+++|.||++ +.+.
T Consensus 288 s~~ai~~~~DK~~tk~l---L~~aGIpVP~~~~~~~~~--------~~~~~~~~~-G-~vVVKP~~G~~G~Gv~v~v~~~ 354 (547)
T TIGR03103 288 SAVAMSLCDDKRLTRRL---VSEAGLQVPEQQLAGNGE--------AVEAFLAEH-G-AVVVKPVRGEQGKGISVDVRTP 354 (547)
T ss_pred CHHHHHHhcCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHh-C-CEEEEECCCCCCcCeEEecCCH
Confidence 67889999999999999 999999999998876432 234455677 4 69999999999999997 8888
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCce--eEEEEE
Q 002207 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW--VEITVG 823 (953)
Q Consensus 746 ~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~--~Eitv~ 823 (953)
++|.. +++.+..+ ...+|||+||+|.++++ ++++|..-. .-....
T Consensus 355 ~eL~~---a~~~a~~~-------------------~~~vlvEe~i~G~d~Rv-----------~Vigg~vvaa~~R~~~~ 401 (547)
T TIGR03103 355 DDLEA---AIAKARQF-------------------CDRVLLERYVPGEDLRL-----------VVIDFEVVAAAVRRPPE 401 (547)
T ss_pred HHHHH---HHHHHHhc-------------------CCcEEEEEeccCCeEEE-----------EEECCEEEEEEEecCcE
Confidence 88875 66666544 46899999999984333 112220000 000111
Q ss_pred EEcCCCCce-eeC------------ceEEEecC--------Cccccc--------------cccccCCCceeEcCCCCCC
Q 002207 824 VIGKCGSMH-SLM------------PSVTVKES--------GDILSL--------------EEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 824 vl~~~~~~~-~~~------------p~~~i~~~--------~~~~d~--------------~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|++...+ .+. ....+.-. ..-|++ .+..+.|.+ ..+
T Consensus 402 V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~-------~~d 474 (547)
T TIGR03103 402 VIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT-------IHD 474 (547)
T ss_pred EEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCe-------eEe
Confidence 222211000 000 00000000 000111 111111111 112
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC-CCcEEEEeeCCCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD-NGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~-~g~~~viEINt~PGlt~~ 921 (953)
+++++...++++|.++++++|+. ++.||+++... .....|||+|..|||..+
T Consensus 475 vtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 475 VTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred cccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 45677889999999999999997 89999998632 234689999999999876
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-14 Score=154.04 Aligned_cols=251 Identities=15% Similarity=0.101 Sum_probs=159.6
Q ss_pred HHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhhccCcCEEEEcCCCCCCCch
Q 002207 100 SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179 (953)
Q Consensus 100 ~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg 179 (953)
.+++++++.|++++.|+.+... . . ...+|+|+--+.+......
T Consensus 40 ~l~~~~~~~Gi~~v~Id~~~pl----------------------~--~-------------qgpfDvilhK~~~~~~~~~ 82 (328)
T PLN02941 40 SLEALARSKGIDLVAIDPSRPL----------------------S--E-------------QGPFDVILHKLYGKEWRQQ 82 (328)
T ss_pred HHHHHHHHCCCeEEEecCCCCc----------------------c--c-------------cCCcCEEEEecCCHHHHHH
Confidence 4888999999999987654310 0 0 1146888877765332222
Q ss_pred HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCC-------CCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcE
Q 002207 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQG-------FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252 (953)
Q Consensus 180 ~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G-------iptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pv 252 (953)
...-.+|..|++.+ .++.+...|.||..|.+.|+++| ||+|+++++.+.+.+...... ...++||+
T Consensus 83 ~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~------~~~l~~P~ 155 (328)
T PLN02941 83 LEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVA------LAGLKFPL 155 (328)
T ss_pred HHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHH------HhcCCCCE
Confidence 23456778899987 67899999999999999999999 999999999875432211111 13478999
Q ss_pred EEeeCCC---CCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccC-CCCeEEEEEEEEeCCCCccccEEecceEEEEe
Q 002207 253 VVKPTRA---GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL-EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ 328 (953)
Q Consensus 253 vVKP~~~---gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI-~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~ 328 (953)
|+||..+ ..|.++.++++.+.+.. ....+++|||| .||+.|.|-|+| +. ..+ +...
T Consensus 156 V~KPl~g~Gss~gh~m~lv~~~~~L~~---------l~~p~~lQEfVnh~g~d~RVfVvG----d~--v~~-----~~R~ 215 (328)
T PLN02941 156 VAKPLVADGSAKSHKMSLAYDQEGLSK---------LEPPLVLQEFVNHGGVLFKVYVVG----DY--VKC-----VRRF 215 (328)
T ss_pred EEeecccCCCccccceEEecCHHHHHh---------cCCcEEEEEecCCCCEEEEEEEEC----CE--EEE-----EEec
Confidence 9999999 77899999999987553 23469999999 456999999995 22 111 1100
Q ss_pred cc-Ccc--ccccCCccc--ccccCccCCCceEE---EcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcc
Q 002207 329 FQ-GSV--DVREKDAIF--NYRRKYLPTQQVAY---HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 329 ~~-~~~--~~~~~~~~~--dy~~Ky~~~~~~~~---~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~ 400 (953)
+. +.. +.+...+.+ +...+...+..-.. .-|...+......+.++|.++.++||+. +++||++...
T Consensus 216 S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~----- 289 (328)
T PLN02941 216 SLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLR-LFNFDMIREH----- 289 (328)
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeec-----
Confidence 00 000 000011122 22222221110000 0011111122345799999999999986 9999987521
Q ss_pred ccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 401 FSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 401 ~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
+.+++++|+|||-.||+..-
T Consensus 290 ----------~~~~~~~VidVN~fP~~k~~ 309 (328)
T PLN02941 290 ----------GTGDRYYVIDINYFPGYAKM 309 (328)
T ss_pred ----------CCCCceEEEEecCCCccccC
Confidence 11246999999999997653
|
|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-15 Score=150.16 Aligned_cols=177 Identities=20% Similarity=0.199 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcE-EEeeCCCCCceeEEEeCCHHHHHHHHHHhHh
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV-VVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pv-vVKP~~~gsS~GV~~v~~~~el~~~a~~~~~ 283 (953)
+|..+|++|+++||||+++..+.+.+.. .+++++ ..+|+ ||||....+++||.++.+.+|+.+.+.+++.
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A----~~~l~~-----~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEA----LEYLEE-----QGYPYVVIKADGLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHH----HHHHHH-----HSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHH----HHHHHh-----cCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 7999999999999999999999875433 333332 45577 9999999999999999999999999988875
Q ss_pred c-C---CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC
Q 002207 284 E-G---IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359 (953)
Q Consensus 284 ~-~---~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P 359 (953)
. . ....++||||+.| .|+++.++-++. ..+.+++.. +....|+-+.--..++ +...+|
T Consensus 73 ~~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~----~~~~lp~aq------------D~Kr~~dgd~GpnTGG-MGa~sp 134 (194)
T PF01071_consen 73 DRKFGDAGSKVVIEEFLEG-EEVSLFALTDGK----NFVPLPPAQ------------DHKRLFDGDTGPNTGG-MGAYSP 134 (194)
T ss_dssp SSTTCCCGSSEEEEE---S-EEEEEEEEEESS----EEEEEEEBE------------EEEEEETTTEEEEESE-SEEEES
T ss_pred ccccCCCCCcEEEEeccCC-eEEEEEEEEcCC----eEEECcchh------------ccccccCCCCCCCCCC-ccceee
Confidence 2 2 2468999999998 999999997542 223333321 1233444443333333 455567
Q ss_pred CC-CCHHHHHHHHH-HHHHHHHHh-----CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 360 PR-FPIVVINSIRE-GASLLFQRL-----GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 360 a~-l~~~~~~~i~~-~a~~~~~aL-----g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
.+ ++++..+++++ +...+.++| .++|+--+.+++ +++| |++||.|.+.|
T Consensus 135 ~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMl-----------------t~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 135 VPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLML-----------------TEDG-PKVLEFNVRFG 190 (194)
T ss_dssp TTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEE-----------------ETTE-EEEEEEESSGS
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEE-----------------eCCC-cEEEEEeCCCC
Confidence 66 68887777765 666666666 567888888775 6677 99999999988
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=175.94 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
..|..++..+.. +.+..++.+|+||..+|++ |+++|||||++..+.+.+ .+.++.+++ +||+||||
T Consensus 191 ~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~l---L~~~GIPvP~~~~v~s~~--------~a~~~a~~i-G~PvVVKP 256 (727)
T PRK14016 191 KYQRRIQAAETD--QTSAIAVDIACDKELTKRL---LAAAGVPVPEGRVVTSAE--------DAWEAAEEI-GYPVVVKP 256 (727)
T ss_pred HHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHH---HHHCCcCCCCeeEeCCHH--------HHHHHHHHc-CCCEEEEE
Confidence 456666766665 7788999999999999999 999999999998776532 233455778 69999999
Q ss_pred CCCCCCcceEE-eCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccc
Q 002207 731 ARDGCSTGVAR-LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795 (953)
Q Consensus 731 ~~~gsS~GV~~-v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~ 795 (953)
..+++|.||++ +++.+++.+ +++.+... ...+|||+||+|+++
T Consensus 257 ~~G~~G~GV~~~v~~~~el~~---a~~~a~~~-------------------~~~viVEe~I~G~d~ 300 (727)
T PRK14016 257 LDGNHGRGVTVNITTREEIEA---AYAVASKE-------------------SSDVIVERYIPGKDH 300 (727)
T ss_pred CCCCCCCceEEecCCHHHHHH---HHHHHHHh-------------------CCeEEEEEecCCceE
Confidence 99999999997 899888875 45555433 468999999999833
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=159.39 Aligned_cols=250 Identities=21% Similarity=0.274 Sum_probs=181.5
Q ss_pred cChHHHHHHhhc-CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEE
Q 002207 622 HSINEWIKLAKE-NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR 700 (953)
Q Consensus 622 ~~~~~~~~~~~~-~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v 700 (953)
+...+.++.+++ .+|.|-|.. |...|.......+...||.|+||++....-.-||...+.+ .-++|+|+.|..
T Consensus 93 L~ideii~iak~~~vdavHPGY-GFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~---Ai~agVpvVPGT-- 166 (1176)
T KOG0369|consen 93 LAIDEIISIAKKHNVDAVHPGY-GFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAI---AIEAGVPVVPGT-- 166 (1176)
T ss_pred hhHHHHHHHHHHcCCCeecCCc-cccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHH---HHHcCCCccCCC--
Confidence 344566766554 567766554 5666888888889999999999999999999999999998 889999987753
Q ss_pred eCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHH-HHHHHHHHHhhCCCCCcccccccccCCCC
Q 002207 701 RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV-YVKALEECLLRIPPNSFSRAHGMIEMPNP 779 (953)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~-~~~al~~a~~~~~~~~~~~~~~~~~~p~~ 779 (953)
+.... . .+...++.++. ++|+|+|.+.+|+++|+.+|++.+++++ |.+|-.++...+ |
T Consensus 167 -pgPit--t-~~EA~eF~k~y-G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaF---------G------- 225 (1176)
T KOG0369|consen 167 -PGPIT--T-VEEALEFVKEY-GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAF---------G------- 225 (1176)
T ss_pred -CCCcc--c-HHHHHHHHHhc-CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhc---------C-------
Confidence 11111 1 23345667788 6999999999999999999999999886 333433443321 1
Q ss_pred CCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccC--CC
Q 002207 780 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG--GT 857 (953)
Q Consensus 780 ~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~--g~ 857 (953)
+..+.||+||+-. +.++|.+++++...+.- . |.-+...+. ..
T Consensus 226 -nG~~FvEkF~ekP------------------------rHIEvQllgD~~GNvvH-----L------yERDCSvQRRHQK 269 (1176)
T KOG0369|consen 226 -NGTLFVEKFLEKP------------------------RHIEVQLLGDKHGNVVH-----L------YERDCSVQRRHQK 269 (1176)
T ss_pred -CceeeHHhhhcCc------------------------ceeEEEEecccCCCEEE-----E------eecccchhhhhcc
Confidence 6789999999976 59999999987433211 1 111111111 12
Q ss_pred ceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCC--------CCCCCchHHHHHH
Q 002207 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP--------GMTPSTVLIHQAL 929 (953)
Q Consensus 858 ~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~P--------Glt~~S~l~~~a~ 929 (953)
...+.|++ .+++++.++|..-|.++++..|.+....++|.+|. .|+.||||||++- -+|...+.-.|..
T Consensus 270 VVEiAPA~--~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~ 346 (1176)
T KOG0369|consen 270 VVEIAPAK--TLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIH 346 (1176)
T ss_pred eeEecccc--cCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEcc-CCCEEEEEecCceeeeeeeeeeeccchhhhhhhh
Confidence 34566766 48999999999999999999999999999999995 7999999999743 3344444555555
Q ss_pred hcCCCCCH
Q 002207 930 SEQPPMYP 937 (953)
Q Consensus 930 ~~~~~~yp 937 (953)
.++|...|
T Consensus 347 vAeG~tLp 354 (1176)
T KOG0369|consen 347 VAEGASLP 354 (1176)
T ss_pred hhcCCCcc
Confidence 55555554
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=175.39 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=100.5
Q ss_pred ccCcCEEEEc----CCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 161 AANVDIVFPT----IHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 161 ~~~~D~vf~~----lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
...+++.... +|-++| ..|..++..+.. +++..++.+|.||..+|++|+++|||+|++..+.+.+. +
T Consensus 171 ~~gi~~~~l~~~~~v~lgyG---~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~----a 241 (727)
T PRK14016 171 ARGIPYIRLGDGSLVQLGYG---KYQRRIQAAETD--QTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAED----A 241 (727)
T ss_pred HcCCCEEEeCCCCeEecCCc---HHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHH----H
Confidence 4567776633 233333 455666666655 77889999999999999999999999999998765432 2
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEE-eCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~-v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.++.+ .++||+||||..+++|.||++ +++.+|+.+....+.. .+..+|||+||+| +|+++.|++
T Consensus 242 ~~~a~-----~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~--~~~~viVEe~I~G-~d~Rv~Vvg 306 (727)
T PRK14016 242 WEAAE-----EIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK--ESSDVIVERYIPG-KDHRLLVVG 306 (727)
T ss_pred HHHHH-----HcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH--hCCeEEEEEecCC-ceEEEEEEC
Confidence 23322 378999999999999999997 9999997766654432 4578999999997 999999984
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-14 Score=156.01 Aligned_cols=214 Identities=17% Similarity=0.248 Sum_probs=144.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
..|++|+-.-...----.+-..+|..|++.+ .++.+...|.||.++-++ |..+|||+|++.++.+.+ +.
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~---l~~~~ipvP~T~i~~~~~-------~~ 146 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQL---LAKAGIPVPPTLITRDPD-------EA 146 (318)
T ss_pred cCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHH---HHhcCCCCCCEEEEcCHH-------HH
Confidence 4688887763322221134568899999987 567899999999999998 999999999999887642 22
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcc-cHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAE-DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~-eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
...+.+.+ +||+|+||.+|.+|.||.++.+.+ ++..+ ++..... ....+|+|+||+-
T Consensus 147 ~~~~~~~~-g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~---~e~~~~~------------------~~~~~ivQeyi~~ 204 (318)
T COG0189 147 AEFVAEHL-GFPVVLKPLDGSGGRGVFLVEDADPELLSL---LETLTQE------------------GRKLIIVQEYIPK 204 (318)
T ss_pred HHHHHHhc-CCCEEEeeCCCCCccceEEecCCChhHHHH---HHHHhcc------------------ccceEehhhhcCc
Confidence 34455667 699999999999999999999999 76653 3333221 1246999999985
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEE-EecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT-VKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~-i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
.. ++...-+++++ ...+.. .+. +..++ +|...+..|.... |.+ ++
T Consensus 205 ~~-----------------------~~~rrivv~~~-~~~~~y-~~~R~~~~~---~~R~N~a~Gg~~e--~~~---l~- 250 (318)
T COG0189 205 AK-----------------------RDDRRVLVGGG-EVVAIY-ALARIPASG---DFRSNLARGGRAE--PCE---LT- 250 (318)
T ss_pred cc-----------------------CCcEEEEEeCC-EEeEEe-eeccccCCC---Cceeecccccccc--ccC---CC-
Confidence 40 13334444432 111110 222 22233 3444555454332 222 23
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++++|.+++++||+. ++.||++.+ ++..||+|||..|+.-.
T Consensus 251 ---~e~~elA~kaa~~lGl~-~~GVDiie~--~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 251 ---EEEEELAVKAAPALGLG-LVGVDIIED--KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred ---HHHHHHHHHHHHHhCCe-EEEEEEEec--CCCcEEEEEeCCCcccc
Confidence 47789999999999874 899999987 45699999999886554
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=179.33 Aligned_cols=102 Identities=22% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEE-eCCHHH
Q 002207 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVID 273 (953)
Q Consensus 195 s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~-v~~~~e 273 (953)
++..++.+|+||..+|++|+++|||+|++..+.+.+. +.++++ .++||+||||..+++|.||++ +++.++
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~e----a~~~~~-----~ig~PvVVKP~~g~~G~GV~l~v~s~~e 273 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAED----AWEAAQ-----DLGYPVVIKPYDGNHGRGVTINILTRDE 273 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHH----HHHHHH-----HcCCCEEEEECCCCCccCEEEEeCCHHH
Confidence 5688999999999999999999999999988865432 233332 367899999999999999998 999999
Q ss_pred HHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 274 SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 274 l~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
+.++...+.. .+..+|||+||+| +||++.|++
T Consensus 274 l~~a~~~a~~--~~~~vlVEefI~G-~e~rvlVv~ 305 (864)
T TIGR02068 274 IESAYEAAVE--ESSGVIVERFITG-RDHRLLVVG 305 (864)
T ss_pred HHHHHHHHHh--hCCcEEEEEeccC-CEEEEEEEC
Confidence 8766655432 4578999999998 999999984
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=150.18 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=148.3
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
.+..+.....+ -+++.+.++..||...|++ |+++|||||+|..+.+.+ .+..+...+ ++|.|+|-
T Consensus 77 aL~~l~~~~~v---~p~~~~l~~~qdR~~eK~~---l~~~Gi~va~~~~v~~~~--------el~~~~~~~-g~p~VlKt 141 (375)
T COG0026 77 ALEKLAASVKV---FPSPDALRIAQDRLVEKQF---LDKAGLPVAPFQVVDSAE--------ELDAAAADL-GFPAVLKT 141 (375)
T ss_pred HHHHHHhhcCc---CCCHHHHHHHhhHHHHHHH---HHHcCCCCCCeEEeCCHH--------HHHHHHHHc-CCceEEEe
Confidence 34444444333 4889999999999999999 999999999999998743 355666788 59999999
Q ss_pred CCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 731 ARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 731 ~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
+.+| -++|..++++.+++... ...... ....++|+||+-+
T Consensus 142 r~gGYDGkGQ~~i~~~~~~~~~---~~~~~~--------------------~~~~vlE~fV~F~---------------- 182 (375)
T COG0026 142 RRGGYDGKGQWRIRSDADLELR---AAGLAE--------------------GGVPVLEEFVPFE---------------- 182 (375)
T ss_pred ccccccCCCeEEeeCcccchhh---Hhhhhc--------------------cCceeEEeecccc----------------
Confidence 9877 69999999998888741 111111 1233999999986
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
+|++|-+..+.+....+.|..+....++++. ..+.|+. +++++.++.+++|.++++.|+
T Consensus 183 --------~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl~----------~siaPa~---i~~~~~~~A~~~a~~i~~~L~ 241 (375)
T COG0026 183 --------REISVIVARSNDGEVAFYPVAENVHRNGILR----------TSIAPAR---IPDDLQAQAEEMAKKIAEELD 241 (375)
T ss_pred --------eEEEEEEEEcCCCCEEEecccceeeecCEEE----------EEEecCc---CCHHHHHHHHHHHHHHHHHcC
Confidence 5999998866444444455555443444443 3366876 588899999999999999999
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
..|+.-|+||+.. +|++++||+-|+|-=+.
T Consensus 242 yvGVl~vE~Fv~~-dg~llvNEiAPRvHNSG 271 (375)
T COG0026 242 YVGVLAVEFFVTP-DGELLVNEIAPRVHNSG 271 (375)
T ss_pred ceEEEEEEEEEEC-CCcEEEeeccCCCCCcc
Confidence 9999999999995 68999999999886553
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=175.96 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=78.5
Q ss_pred CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE-eCC
Q 002207 666 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR-LCC 744 (953)
Q Consensus 666 ~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~-v~~ 744 (953)
.+..++.+|+||..||++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||.++++|.||++ +.+
T Consensus 203 ~s~ia~~ia~DK~~tk~l---L~~~GIpvP~~~~~~s~~--------ea~~~~~~i-g~PvVVKP~~g~~G~GV~l~v~s 270 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEI---LSDAGVPVPEGTVVQSAE--------DAWEAAQDL-GYPVVIKPYDGNHGRGVTINILT 270 (864)
T ss_pred CcHHHHHHHcCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHc-CCCEEEEECCCCCccCEEEEeCC
Confidence 457899999999999999 999999999998886532 233455678 6999999999999999998 888
Q ss_pred cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccc
Q 002207 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795 (953)
Q Consensus 745 ~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~ 795 (953)
.+++.+ +++.++.. +..+|||+||+|+++
T Consensus 271 ~~el~~---a~~~a~~~-------------------~~~vlVEefI~G~e~ 299 (864)
T TIGR02068 271 RDEIES---AYEAAVEE-------------------SSGVIVERFITGRDH 299 (864)
T ss_pred HHHHHH---HHHHHHhh-------------------CCcEEEEEeccCCEE
Confidence 888875 56655543 467999999999833
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-13 Score=149.07 Aligned_cols=297 Identities=15% Similarity=0.150 Sum_probs=174.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC----Cceeeeccccccc-CCCCCccccccccccccCc
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYS-NTPADFDFKLESLAQGFGS 152 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~----g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (953)
|||++++ =+=...+....|...++.+.++.||+|..+..+.= +..+... ..... .... .++.
T Consensus 1 m~~~~~~-~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~-~~~~~~~~~~--~~~~--------- 67 (312)
T TIGR01380 1 LKVAFQM-DPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARA-RPVRVGPNKQ--DWYT--------- 67 (312)
T ss_pred CeEEEEe-CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEE-EEEEeccCCc--ceee---------
Confidence 5788888 22234555666889999999999999987654221 1100000 00000 0000 0000
Q ss_pred chhHHHhhccCcCEEEEcCCCCCCCc----hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 153 LSEFAEHLAANVDIVFPTIHGRFGED----GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 153 ~~~~~~~~~~~~D~vf~~lhG~~GEd----g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
..+........+|+||+.....+.+. ..+-..+|..|++++ +++.+.+.|.||..+.+++. ++|++....+
T Consensus 68 ~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~ 142 (312)
T TIGR01380 68 LGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVTRD 142 (312)
T ss_pred cCcccccccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEeCC
Confidence 00000000126899999986665532 246788888999876 77899999999999887753 7999887654
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCC--CeEEEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIV 306 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv~V 306 (953)
.+ .+.++++. . +|+|+||..|++|.||.++...+.......+.+.......+++|+||+. +.|+++.|
T Consensus 143 ~~----~~~~~~~~-----~-g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 143 KA----EIRAFLAE-----H-GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred HH----HHHHHHHH-----c-CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEE
Confidence 32 23444332 2 3899999999999999998753211112222222112457999999962 27999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
++ + +++.-. +.-.+ .. -+|+.....|+ ...|..++++.. +|.+.+..+++++|+. |
T Consensus 213 v~----g--~vv~~a---i~R~~--------~~--gd~r~N~~~Gg---~~~~~~l~~e~~-~ia~~~~~~~~~~gl~-~ 268 (312)
T TIGR01380 213 ID----G--EPIGAA---VARIP--------AG--GEFRGNLAVGG---RGEATELSERDR-EICADVAPELKRRGLL-F 268 (312)
T ss_pred EC----C--eEEEEE---EEecC--------CC--CCccccccCCc---eeeccCCCHHHH-HHHHHHHHHHHhcCCc-E
Confidence 94 2 222101 11111 11 14666666554 234556777652 3333333334667775 9
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCC-CCCCCcchHHHHHHHhCCCHHHHHHHHHH
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTIIG 453 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~~S~~p~~a~~~G~s~~~ll~~li~ 453 (953)
++||++ | .+|+|||.. |. .+..+..++|++..+.+-..++
T Consensus 269 agVDii---------------------g-~~v~EvN~~~p~-----~~~~~~~~~g~~ia~~i~d~l~ 309 (312)
T TIGR01380 269 VGIDVI---------------------G-GYLTEVNVTSPT-----GIREIDRQKGVNIAGMLWDAIE 309 (312)
T ss_pred EEEEEe---------------------C-CEEEEEecCCcc-----hHHHHHhhhCCCHHHHHHHHHH
Confidence 999974 2 379999975 32 3334556789998766655554
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-14 Score=142.72 Aligned_cols=182 Identities=17% Similarity=0.189 Sum_probs=126.1
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE-EEecCCCCCCcceEEeCCcccHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL-CVKPARDGCSTGVARLCCAEDLTVYVKA 754 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Pl-vVKP~~~gsS~GV~~v~~~~eL~~~~~a 754 (953)
+|.++|++ |+++||||+++..+++.+ ...++.++. .+|+ ||||....++.||.++.+.++.. ++
T Consensus 2 SK~faK~f---m~~~~IPTa~~~~f~~~~--------~A~~~l~~~-~~p~~ViKadGla~GKGV~i~~~~~eA~---~~ 66 (194)
T PF01071_consen 2 SKSFAKEF---MKRYGIPTAKYKVFTDYE--------EALEYLEEQ-GYPYVVIKADGLAAGKGVVIADDREEAL---EA 66 (194)
T ss_dssp BHHHHHHH---HHHTT-SB--EEEESSHH--------HHHHHHHHH-SSSEEEEEESSSCTTTSEEEESSHHHHH---HH
T ss_pred CHHHHHHH---HHHcCCCCCCeeEECCHH--------HHHHHHHhc-CCCceEEccCCCCCCCEEEEeCCHHHHH---HH
Confidence 68999999 999999999999987633 234455666 6888 99999999999999998766655 46
Q ss_pred HHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceee
Q 002207 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834 (953)
Q Consensus 755 l~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~ 834 (953)
+++.+.. ..+. .....+|||||++|. |+++.++.++.....+
T Consensus 67 l~~~~~~---~~fg----------~~~~~vvIEE~l~G~-------------------------E~S~~a~~dG~~~~~l 108 (194)
T PF01071_consen 67 LREIFVD---RKFG----------DAGSKVVIEEFLEGE-------------------------EVSLFALTDGKNFVPL 108 (194)
T ss_dssp HHHHHTS---STTC----------CCGSSEEEEE---SE-------------------------EEEEEEEEESSEEEEE
T ss_pred HHHhccc---cccC----------CCCCcEEEEeccCCe-------------------------EEEEEEEEcCCeEEEC
Confidence 7777642 0111 125789999999997 9999999987665444
Q ss_pred CceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHH-HHHHHHHHc-----CCcceEEEEEEEEcCCCcEE
Q 002207 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQ-RIELIANAL-----QLEGFSRIDAFVNVDNGEVL 908 (953)
Q Consensus 835 ~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~-~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~ 908 (953)
++.... ...|+-+.--+.|....+.|.+. ++++..+++.+ +.+.+.++| .++|+..+.++++. +| ++
T Consensus 109 p~aqD~---Kr~~dgd~GpnTGGMGa~sp~p~--~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~-~G-p~ 181 (194)
T PF01071_consen 109 PPAQDH---KRLFDGDTGPNTGGMGAYSPVPF--ITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTE-DG-PK 181 (194)
T ss_dssp EEBEEE---EEEETTTEEEEESESEEEESTTT--S-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEET-TE-EE
T ss_pred cchhcc---ccccCCCCCCCCCCccceeeccc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeC-CC-cE
Confidence 433322 23455554555556677888774 68888777776 666666555 56799999999994 44 99
Q ss_pred EEeeCCCCC
Q 002207 909 IIEVNTVPG 917 (953)
Q Consensus 909 viEINt~PG 917 (953)
|||.|.+.|
T Consensus 182 vlEfN~RfG 190 (194)
T PF01071_consen 182 VLEFNVRFG 190 (194)
T ss_dssp EEEEESSGS
T ss_pred EEEEeCCCC
Confidence 999999876
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=151.02 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=150.9
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCC-------CCccCeEEEeCcccc
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-------VLTINKDVRRKEDLL 706 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~G-------Iptp~~~~v~~~~~~ 706 (953)
.+|+|+.=+.+.....-....++|..|+|.+- ++.+...|.||..|.++ |+++| ||+|+++++.+.+..
T Consensus 66 pfDvilhK~~~~~~~~~~~~~~~e~pgv~vid-p~~ai~~~~dR~~~~~~---L~~~~~~~~~~~i~~P~t~v~~~~~~a 141 (328)
T PLN02941 66 PFDVILHKLYGKEWRQQLEEYREKHPDVTVLD-PPDAIQRLHNRQSMLQV---VADLKLSDGYGSVGVPKQLVVYDDESS 141 (328)
T ss_pred CcCEEEEecCCHHHHHHHHHHHHHCCCcEEEC-CHHHHHHHHHHHHHHHH---HHHcCCcccCCCCCCCCEEEEcCHHHH
Confidence 46888887766433332344566788999875 56889999999999998 89999 999999998775420
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCC---CCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 707 KTPIVDIWHELTSKLQCKTLCVKPARD---GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 707 ~~~~~~~~~~~~~~lg~~PlvVKP~~~---gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
... ....+++ +||+|+||..+ ..|.++.++.+.+.|.. + ..+
T Consensus 142 ----l~~-~~~~~~l-~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~--------l---------------------~~p 186 (328)
T PLN02941 142 ----IPD-AVALAGL-KFPLVAKPLVADGSAKSHKMSLAYDQEGLSK--------L---------------------EPP 186 (328)
T ss_pred ----HHH-HHHHhcC-CCCEEEeecccCCCccccceEEecCHHHHHh--------c---------------------CCc
Confidence 111 1224678 69999999998 67899999998877653 1 246
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCce--eeCceEE---EecCCcccccc--ccccCC
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH--SLMPSVT---VKESGDILSLE--EKFQGG 856 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~--~~~p~~~---i~~~~~~~d~~--~Ky~~g 856 (953)
+++||||.-. ++.|.|-|+|+.-... .-.|.+. .....+.+.|. .+...+
T Consensus 187 ~~lQEfVnh~-----------------------g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~ 243 (328)
T PLN02941 187 LVLQEFVNHG-----------------------GVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAAS 243 (328)
T ss_pred EEEEEecCCC-----------------------CEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccc
Confidence 9999999531 2477777777641000 0001110 00011222221 111111
Q ss_pred Cc-ee---EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC-CcEEEEeeCCCCCCCCCchHHHHHHhc
Q 002207 857 TG-IN---LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-GEVLIIEVNTVPGMTPSTVLIHQALSE 931 (953)
Q Consensus 857 ~~-~~---~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~-g~~~viEINt~PGlt~~S~l~~~a~~~ 931 (953)
.. .. ..|.. .+-...+.++++|.++.++||+. ++.||++.+.++ ++++|+|||..||+-..-
T Consensus 244 ~~~~~~~~~~~~~---~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p--------- 310 (328)
T PLN02941 244 ADDADNGGLDPEV---AELPPRPFLEDLARELRRRLGLR-LFNFDMIREHGTGDRYYVIDINYFPGYAKMP--------- 310 (328)
T ss_pred ccccccccccccc---ccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeecCCCCceEEEEecCCCccccCC---------
Confidence 10 00 00111 01112346899999999999997 889999988533 478999999999998764
Q ss_pred CCCCCHHHHHHHHHHHH
Q 002207 932 QPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 932 ~~~~yp~~l~~~li~~a 948 (953)
.|...|.+-++++.
T Consensus 311 ---~~~~~l~~~~~~~~ 324 (328)
T PLN02941 311 ---GYETVLTDFLLSLV 324 (328)
T ss_pred ---chHHHHHHHHHHHH
Confidence 56555555555543
|
|
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-13 Score=147.65 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=130.0
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|-+|.+...-.+...+|-+ ...-+|.||..|..+ |+++|||||+++.+...+. ..+.+.++.. +
T Consensus 11 ~~~~~~~~~~~~~~~~N~r------~~~~~~~DK~~t~~l---L~~aglpvP~T~~~~s~~~----~~~~l~~~~~---~ 74 (317)
T TIGR02291 11 GIMGMNKRNADYILRYNKR------SLYPLVDDKLKTKII---AQAAGITVPELYGVIHNQA----EVKTIHNIVK---D 74 (317)
T ss_pred CccccCcchHHHHHhcCCc------hhccccccHHHHHHH---HHHcCCCCCCEEEecCchh----hHHHHHHHHc---c
Confidence 3455555555555555443 445779999999998 9999999999887765431 1122333332 3
Q ss_pred C-cEEEecCCCCCCcceEEeCCcccH---------------HHHHH-HHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 724 K-TLCVKPARDGCSTGVARLCCAEDL---------------TVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 724 ~-PlvVKP~~~gsS~GV~~v~~~~eL---------------~~~~~-al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
+ |+||||..+..+.||.++++.++. +.... ++...+... ...+.+++
T Consensus 75 ~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~----------------~~~~~~lv 138 (317)
T TIGR02291 75 HPDFVIKPAQGSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLG----------------GKNDVALI 138 (317)
T ss_pred CCCEEEEECCCCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhcc----------------CCCcEEEE
Confidence 4 699999999999999999776543 22111 111111110 01235777
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC-CccccccccccCCCce------
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQGGTGI------ 859 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~-~~~~d~~~Ky~~g~~~------ 859 (953)
|+++...+.. ..+ +...|+.+.|-++++.. .....+.... ++ +...++.|...
T Consensus 139 E~~i~~~~~~----------~~~---~~~~v~diRV~vv~~~~----vaa~~R~~~~~~~---~~tN~~~Gg~~~~vdl~ 198 (317)
T TIGR02291 139 EYRVKFDPCF----------DGF---SYEGVPDIRIIVFKGYP----VMAMMRLPTRASD---GKANLHQGAVGVGIDLA 198 (317)
T ss_pred EeeccCCcch----------hcc---ccCCCCCEEEEEECCEE----EEEEEEccCccCC---cccccccCCceeeeecC
Confidence 7665432100 000 00112355555554321 0001111100 01 11111111100
Q ss_pred --------------eEcCC---CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 860 --------------NLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 860 --------------~~~P~---~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
...|. +...+.-+..+++.++|.++++++|| |++++|++++. ++.++|+|||+.||||
T Consensus 199 tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t--- 273 (317)
T TIGR02291 199 TGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA--- 273 (317)
T ss_pred CCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC---
Confidence 00111 00012235567899999999999999 89999999985 5789999999999999
Q ss_pred hHHHHHHhcCCCCCHH
Q 002207 923 VLIHQALSEQPPMYPH 938 (953)
Q Consensus 923 ~l~~~a~~~~~~~yp~ 938 (953)
++.|.++ +++|.
T Consensus 274 --~~~a~~~--Gl~~~ 285 (317)
T TIGR02291 274 --IQIANGA--GLLPR 285 (317)
T ss_pred --HHHHHHC--CCcHH
Confidence 3344444 36764
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=143.88 Aligned_cols=294 Identities=16% Similarity=0.151 Sum_probs=172.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec---C-CceeeecccccccCCCCCccccccccccccCcc
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---N-LNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~---~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
|||++++ =+=...+....|...++++.++.||+|+.+.... . +................. ++.......+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~--w~~~~~~~~~--- 75 (316)
T PRK05246 2 MKVAFQM-DPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGD--WYELGEEQRL--- 75 (316)
T ss_pred ceEEEEe-CCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCcc--ceeccccccC---
Confidence 6888888 3333455666678889999999999998765321 0 100000000000000000 0000000000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCc----hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCC
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGED----GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEd----g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~ 229 (953)
. ...+|+||+.....+.+. ..+-..++..|++++ +++.+...+.||..+.+++. ++|++....+.
T Consensus 76 -----~-l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~ 144 (316)
T PRK05246 76 -----P-LADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK 144 (316)
T ss_pred -----c-cccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH
Confidence 0 125899998876555532 235677888899887 56889999999999988755 78888776543
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCC-HHHHHHHHHHhHhcCCCCcEEEeccCCC--CeEEEEEE
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG-VIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIV 306 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~-~~el~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv~V 306 (953)
+ .+.+++++ . +|+|+||..|++|.||.++.. ..++. ...+.+.......+|+|+||+. +.+++|.|
T Consensus 145 ~----~~~~~~~~-----~-~~vVlKP~~G~~G~gV~~i~~~~~~~~-~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~v 213 (316)
T PRK05246 145 A----EIRAFRAE-----H-GDIILKPLDGMGGAGIFRVKADDPNLG-SILETLTEHGREPVMAQRYLPEIKEGDKRILL 213 (316)
T ss_pred H----HHHHHHHH-----C-CCEEEEECCCCCccceEEEeCCCccHH-HHHHHHHHccCCeEEEEeccccCCCCCEEEEE
Confidence 2 23344332 2 389999999999999999954 22221 1122222223468999999964 36899999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHH---HHhCC
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF---QRLGL 383 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~---~aLg~ 383 (953)
++ | +++.. . +.-.+ .. -+|+.....|+ . ..|..++++. +++|.++. +.+|+
T Consensus 214 v~---g---~vv~~-a--~~R~~--------~~--~~~rtN~~~Gg-~--~~~~~l~~~~----~~ia~~~~~~l~~~gl 267 (316)
T PRK05246 214 VD---G---EPVGY-A--LARIP--------AG--GETRGNLAAGG-R--GEATPLTERD----REICAAIGPELKERGL 267 (316)
T ss_pred EC---C---EEhhh-e--eEecC--------CC--CCcccCccCCc-e--EeccCCCHHH----HHHHHHHHHHHHHhCC
Confidence 83 1 21110 1 11111 11 25666665554 2 3455677654 45555555 56666
Q ss_pred CCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCC-CCCCCcchHHHHHHHhCCCHHHHHHHHHH
Q 002207 384 CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTIIG 453 (953)
Q Consensus 384 ~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~~S~~p~~a~~~G~s~~~ll~~li~ 453 (953)
. +++||++ |. ||+|||.. |+ .+-.+.+++|++..+.+-.-++
T Consensus 268 ~-~~GVDli---------------------~~-~l~EvN~~~p~-----~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 268 I-FVGIDVI---------------------GD-YLTEINVTSPT-----GIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred C-EEEEEEe---------------------CC-EEEEEeCCCch-----HHHHHHHHhCCCHHHHHHHHHH
Confidence 4 9999974 22 69999964 64 2445567889998665544443
|
|
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=146.50 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=145.0
Q ss_pred CcCEEEEcCCCCCCCch--HHH-------HHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 163 NVDIVFPTIHGRFGEDG--GIQ-------EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg--~iq-------~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+|+||+.....+..+. .+. .+++..|++++ +++.+...|.||..+..+++ +++|++++..+.+
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~--- 151 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKE--- 151 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHH---
Confidence 68999998865554322 122 44467899776 78999999999999976655 6788887765432
Q ss_pred hhhhhhhhhcCCCCCCC-cEEEeeCCCCCceeEEEeCCHHH-HHHHHHHhHhcCCCCcEEEeccCCC--CeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~-PvvVKP~~~gsS~GV~~v~~~~e-l~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv~Vl~~ 309 (953)
.+.++++. .++ |+||||..|.+|.||.++++.++ ....+.+.+. ....+|+|+||++ ..++.+.+++
T Consensus 152 -~~~~~~~~-----~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~--~~~~~ivQeyI~~~~~gDiRv~vv~- 222 (338)
T PRK12458 152 -YIREFLEE-----SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYS--GDGYVIAQEYLPGAEEGDVRILLLN- 222 (338)
T ss_pred -HHHHHHHH-----cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHh--hCCCEEEEEcccCCCCCCEEEEEEC-
Confidence 23344332 444 59999999999999999986553 2223333222 1357999999974 2578888884
Q ss_pred CCCCccccE----EecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh---C
Q 002207 310 GSGFDCHPV----VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL---G 382 (953)
Q Consensus 310 ~~g~~~~~v----~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL---g 382 (953)
++++ .... +.-.+ . --+++.....++. ..+..+++++ +++|.++..+| |
T Consensus 223 -----g~~v~~~g~~~a--~~R~~--------~--~~d~RsN~~~Gg~---~~~~~l~~~~----~~ia~~~~~~l~~~G 278 (338)
T PRK12458 223 -----GEPLERDGHYAA--MRRVP--------A--GGDVRSNVHAGGS---VVKHTLTKEE----LELCEAIRPKLVRDG 278 (338)
T ss_pred -----CEEEeeccceeE--EEEec--------C--CCCeeecccCCCc---ccCcCCCHHH----HHHHHHHHHHHhhcC
Confidence 1232 0011 11011 0 1245555554442 2455576665 56666666666 6
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC-CCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL-ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~-~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+. +++||++ | .+++|||+ .|| .++.+...+|+++.+.+-.-|+..+.+
T Consensus 279 L~-~~gVDli---------------------~-~~l~EIN~~sp~-----g~~~~~~~~g~d~a~~i~~~i~~~~~~ 327 (338)
T PRK12458 279 LF-FVGLDIV---------------------G-DKLVEVNVFSPG-----GLTRINKLNKIDFVEDIIEALERKVQR 327 (338)
T ss_pred Ce-EEeEEEE---------------------C-CEEEEEeCCCcc-----hHHHHHHHhCCCHHHHHHHHHHHHHhH
Confidence 64 9999974 1 25899997 574 345566778999977776666665544
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-13 Score=142.24 Aligned_cols=279 Identities=17% Similarity=0.163 Sum_probs=166.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE--EecCCceeeecccccccCCCCCccccccccccccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY--IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~--id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
..||+|+. .-.+.|.+.+.+.||+|+.+. .+.|...+.+. -++........- .++..+ .-+.
T Consensus 11 ~~kiLviG-----------vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~--~l~~r~~~~~~r-fe~~de--~~li 74 (389)
T COG2232 11 SCKILVIG-----------VNTRPVVESASKLGFEVYSVQYYDPADLPGDAIS--YLRERPGELLGR-FENLDE--QKLI 74 (389)
T ss_pred cceEEEEe-----------ecchHhHHHHHhcCeEEEEeEeecccccccccce--EEEecChhhcCc-ccCCCH--HHHH
Confidence 46888886 126889999999999998653 33332211100 000000000000 000000 0011
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHH-HHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR-ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~-a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
+.+..+...+|+.|..+.|.-.++... .++.++.|+++. ....+.+|..+.+.+...|+|.|+.......
T Consensus 75 ~~~~~~~~dvD~~ii~~sg~e~l~~~g-----~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e~~---- 145 (389)
T COG2232 75 EAAEDLAEDVDAPIIPFSGFEALRTSG-----ELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIEPL---- 145 (389)
T ss_pred HHHHhhhhhcceeeeeccccccccccC-----ccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhhhh----
Confidence 233445668999777776644433211 345678888888 7888899999999999999999876443211
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
..--.++|.||.+|++++ +.++.-.++. ....+|.|+||+| +-++|.++.++ .
T Consensus 146 ------------~~gekt~IlKPv~GaGG~-~el~~~~Ee~-----------~~~~~i~Qefi~G-~p~Svs~is~g--~ 198 (389)
T COG2232 146 ------------EEGEKTLILKPVSGAGGL-VELVKFDEED-----------PPPGFIFQEFIEG-RPVSVSFISNG--S 198 (389)
T ss_pred ------------hhcceeeEEeeccCCCce-eeeccccccc-----------CCcceehhhhcCC-ceeEEEEEecC--c
Confidence 112348999999999985 2222211221 1257999999998 99999999643 2
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeee
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~ 393 (953)
+ ...+...+..+.. ......-|-|..+. +|. +.+..++++++|..+...||+.|...|||++
T Consensus 199 ~--a~~la~N~QiI~~-----~~~~~~~f~Y~GNl---------TP~--~~~~~ee~e~la~elV~~lgL~GsnGVDfvl 260 (389)
T COG2232 199 D--ALTLAVNDQIIDG-----LRGEYSQFVYKGNL---------TPF--PYEEVEEAERLAEELVEELGLVGSNGVDFVL 260 (389)
T ss_pred c--eEEEEEeeeeecc-----cccccccceeccCc---------CCC--cchhhHHHHHHHHHHHHHhccccccccceEe
Confidence 2 3333333333211 00000111232222 443 2233378899999999999999999999976
Q ss_pred cCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHH
Q 002207 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 447 (953)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~l 447 (953)
++.| +|++||||++.-| +=-+...+|++.-++
T Consensus 261 -----------------~d~g-pyViEVNPR~qGt----~e~iE~s~giNl~~l 292 (389)
T COG2232 261 -----------------NDKG-PYVIEVNPRIQGT----LECIERSSGINLFRL 292 (389)
T ss_pred -----------------ecCC-cEEEEecCcccch----HHHHHHhcCCCHHHH
Confidence 4555 9999999988633 233556789975433
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=139.99 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=137.4
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
+++|..+....-..|+-=.+....|.. +--+||++.|++.|.||+.+.+.|+.+ +++|++.-...
T Consensus 72 e~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~------------- 136 (307)
T COG1821 72 EKADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWAE------------- 136 (307)
T ss_pred hcCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-------------
Confidence 489988887754444333556777777 777899999999999999999999999 99998753211
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~ 321 (953)
..-.+||||+.+.+|.|+....+..+. .|+|+||+| ..++|.+.. |....|. .
T Consensus 137 ------~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~---GEkv~pL--s 189 (307)
T COG1821 137 ------EPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSV---GEKVLPL--S 189 (307)
T ss_pred ------CCceEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEec---CCccccc--e
Confidence 223589999999999999887776552 478999998 999999653 3332222 1
Q ss_pred ceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC-CCCeeEeeeeecCCCCcc
Q 002207 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG-LCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 322 ~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg-~~G~arVDf~~~~~~~~~ 400 (953)
..+. + -.|+..+-+|..+ +++++.++.+.+.+.|.++.+.++ |+||..||+++
T Consensus 190 vNrQ---f---------i~~~~~~~~y~gg-------~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVl------- 243 (307)
T COG1821 190 VNRQ---F---------IIFAGSELVYNGG-------RTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVL------- 243 (307)
T ss_pred echh---h---------hhhccceeeeccC-------cCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEe-------
Confidence 1110 0 0233444555532 456788999999999999999995 99999999876
Q ss_pred ccccccccCcccCCcEEEEeecCCCC
Q 002207 401 FSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 401 ~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
. +.+|++||||+|-
T Consensus 244 -----------s-D~pYvIEINpR~T 257 (307)
T COG1821 244 -----------S-DEPYVIEINPRPT 257 (307)
T ss_pred -----------c-CCcEEEEecCCCC
Confidence 2 4699999999886
|
|
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=146.34 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=151.0
Q ss_pred EEecCCCCCCccHHHHHHHHcCCCEeCCChHHHH-HhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHH
Q 002207 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK-TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL 717 (953)
Q Consensus 639 f~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~-l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~ 717 (953)
+.+=||.+-+--.+..+...+.+|+.|+-.+--. --.||..+.++ |+++||++|+.+. +.
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~---L~~aGI~~Pk~~~-~p--------------- 148 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVPIFGNRYLLRWEERTGEKNYYWL---LEKAGIPYPKLFK-DP--------------- 148 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCCcccCHHHhhhhhccCHHHHHHH---HHHcCCCCceeec-Cc---------------
Confidence 3344787776555666655799999998754222 22688888777 8999999999764 11
Q ss_pred HhhcCCCcEEEecCCCCC--CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccc
Q 002207 718 TSKLQCKTLCVKPARDGC--STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795 (953)
Q Consensus 718 ~~~lg~~PlvVKP~~~gs--S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~ 795 (953)
+++ .+|+||||..+.+ |+|++++++.+|+... .+..... +.|. ......++|||||.|.
T Consensus 149 -~eI-d~PVIVKp~~asG~~srG~f~a~s~eEl~~~---a~~l~~~----------g~I~--~~~~~~~iIQEyI~G~-- 209 (366)
T PRK13277 149 -EEI-DRPVIVKLPEAKRRLERGFFTASSYEDFYEK---SEELIKA----------GVID--REDLKNARIEEYVIGA-- 209 (366)
T ss_pred -ccc-CccEEEEECCCCCccccCeEeeCCHHHHHHH---HHhhhhc----------Cccc--ccccccceeEeccCCC--
Confidence 234 6899999999999 9999999999998763 2222110 1110 0012567899999997
Q ss_pred ccccccccccchhhhhcCCCceeEEEEEEEcC--CCCceeeCceEEEec-CCccccccccccC----CC--cee-EcCCC
Q 002207 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKE-SGDILSLEEKFQG----GT--GIN-LTPPP 865 (953)
Q Consensus 796 ~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~~-~~~~~d~~~Ky~~----g~--~~~-~~P~~ 865 (953)
|+++.++-+ .+....+.+..++.. -.++...-++-+- .. ... ..|..
T Consensus 210 -----------------------ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t 266 (366)
T PRK13277 210 -----------------------HFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT 266 (366)
T ss_pred -----------------------EEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc
Confidence 888888866 343332222222221 1223333222110 00 000 13443
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC------CcceEEEEEEEEcCCCcEEEEeeCC-CCCCCCCchHHHHHHhcCCCCCHH
Q 002207 866 ASIMSTEALDKCKQRIELIANALQ------LEGFSRIDAFVNVDNGEVLIIEVNT-VPGMTPSTVLIHQALSEQPPMYPH 938 (953)
Q Consensus 866 ~~~l~~~~~~~i~~~a~~~~~aLg------~~G~ariDf~v~~~~g~~~viEINt-~PGlt~~S~l~~~a~~~~~~~yp~ 938 (953)
+.+.+++++.+.++++.++++ +.|...+|++++. ++++|++|||+ .+|=|+.+ .+.|..||.
T Consensus 267 ---~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~~~~V~EInpR~gGGtnl~-------~~aGs~y~~ 335 (366)
T PRK13277 267 ---IRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DLDFVVYDVAPRIGGGTNVY-------MGVGSPYSK 335 (366)
T ss_pred ---chHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CCcEEEEEEcCCcCCCccce-------eecCCCcHH
Confidence 567799999999999999976 6899999999984 69999999998 46666654 222445765
Q ss_pred HHHH
Q 002207 939 QFFR 942 (953)
Q Consensus 939 ~l~~ 942 (953)
.++.
T Consensus 336 l~~~ 339 (366)
T PRK13277 336 LYFG 339 (366)
T ss_pred HHhc
Confidence 5543
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-13 Score=135.70 Aligned_cols=216 Identities=20% Similarity=0.182 Sum_probs=147.7
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 625 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 625 ~~~~~~~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
.++++...++.|..+.+-.-..|.--++-...|.+ +--.||++.|.++|.||+.|.+. |+.+ +++|+..-+..
T Consensus 64 ~~~~ek~le~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~a---Lr~a-V~~p~t~e~~~-- 136 (307)
T COG1821 64 LRDEEKALEKADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKA---LRDA-VKQPPTREWAE-- 136 (307)
T ss_pred HHHHHHHHhcCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHH---Hhhh-ccCCCcccccc--
Confidence 35565556678877777654444434677888888 77789999999999999999998 8888 99998753211
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
. +--+||||+++.++.|+....+..++ .
T Consensus 137 ----------------~-~~k~ViKp~dgCgge~i~~~~~~pd~-----------------------------------~ 164 (307)
T COG1821 137 ----------------E-PKKYVIKPADGCGGEGILFGRDFPDI-----------------------------------E 164 (307)
T ss_pred ----------------C-CceEEecccccCCcceeeccCCCcch-----------------------------------h
Confidence 1 34579999999999999887654442 4
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCC
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~ 864 (953)
|+|+||+|. .++|++... .....+ ++ ..+--.|+..+-+|.+|. +|
T Consensus 165 i~qEfIeG~-------------------------~lSVSL~~G-Ekv~pL--sv-NrQfi~~~~~~~~y~gg~----~p- 210 (307)
T COG1821 165 IAQEFIEGE-------------------------HLSVSLSVG-EKVLPL--SV-NRQFIIFAGSELVYNGGR----TP- 210 (307)
T ss_pred hHHHhcCCc-------------------------ceEEEEecC-Cccccc--ee-chhhhhhccceeeeccCc----CC-
Confidence 678899997 777774432 222111 11 011112444556677663 23
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcC-CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 865 PASIMSTEALDKCKQRIELIANALQ-LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 865 ~~~~l~~~~~~~i~~~a~~~~~aLg-~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++.++.+++.+.|.++.+.++ |.||..||+.+. +++|++|||++|--+-.. .+ --+|..+-+-
T Consensus 211 ----i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TTp~vg----~s-----r~~~~sv~~L 274 (307)
T COG1821 211 ----IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTTPTVG----LS-----RVTPESVAEL 274 (307)
T ss_pred ----CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCcceee----ee-----ccccHHHHHH
Confidence 356889999999999999995 999999999885 579999999887533221 00 0255566665
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
|++...
T Consensus 275 Ll~~~~ 280 (307)
T COG1821 275 LLEGPT 280 (307)
T ss_pred HhcCcc
Confidence 655443
|
|
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=154.04 Aligned_cols=223 Identities=19% Similarity=0.306 Sum_probs=166.0
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE----Ee-------
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV----RR------- 701 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~----v~------- 701 (953)
-.+|.||.. .|--.|+-.++.+|...||-|.||+..|+.-.-||.....+ .+.+||||.+|-- +.
T Consensus 136 ~~VdAVWaG-WGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIv---AQsa~vPtlpWSGS~v~~~~~~~~~~ 211 (2196)
T KOG0368|consen 136 TDVDAVWAG-WGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTII---AQSAGVPTLPWSGSGVKVEHIEDKTN 211 (2196)
T ss_pred cccceEeec-ccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHH---HHhcCCCcccccCCcceeeeecccCC
Confidence 457888865 46677999999999999999999999999999999999988 8999999999831 10
Q ss_pred ----CccccCC----chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCccccccc
Q 002207 702 ----KEDLLKT----PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 773 (953)
Q Consensus 702 ----~~~~~~~----~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~ 773 (953)
++|...+ +.++-++ ..+++ |||+++|.+.|||+.||.+|++.+|+..+.+.++. ..
T Consensus 212 ~v~Vpedly~Kacv~~~eegLe-aae~I-GfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~---Ev----------- 275 (2196)
T KOG0368|consen 212 LVSVPEDLYEKACVRNVEEGLE-AAEKI-GFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQN---EV----------- 275 (2196)
T ss_pred eEecCHHHhhhhhcCCHHHHHH-HHHhc-CCceEEEeccCCCCcceeeccchHHHHHHHHHHHh---hC-----------
Confidence 0111000 2233333 34568 69999999999999999999999999865444433 22
Q ss_pred ccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCcccccccc
Q 002207 774 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEK 852 (953)
Q Consensus 774 ~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~K 852 (953)
|..++.+.+...+. |.++|.+++++ |..+++.+. +..
T Consensus 276 ------PGSPIFlMK~a~~A------------------------RHlEVQlLaDqYGn~IsLfgR------------DCS 313 (2196)
T KOG0368|consen 276 ------PGSPIFLMKLADQA------------------------RHLEVQLLADQYGNVISLFGR------------DCS 313 (2196)
T ss_pred ------CCCceeeeecccCc------------------------ceeeeehhhhhcCCEeEeecc------------cch
Confidence 26788888888875 69999999986 333344322 111
Q ss_pred ccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC
Q 002207 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917 (953)
Q Consensus 853 y~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG 917 (953)
.|......+.-+|+++.+.+..+++++.|.++++..|..+.+.|++...+++|++||+|.||+--
T Consensus 314 iQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQ 378 (2196)
T KOG0368|consen 314 IQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQ 378 (2196)
T ss_pred HHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCcccc
Confidence 11111122333445557899999999999999999999999999999998889999999997543
|
|
| >KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-11 Score=133.09 Aligned_cols=226 Identities=15% Similarity=0.170 Sum_probs=157.5
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++.+|.+--. ...-..+.+.|...|||..|++..++.+-.+|..+|.+|.++||||+.|..+.+.+..+ .+++
T Consensus 67 ~~I~lVvvGPE--~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~----sfi~ 140 (788)
T KOG0237|consen 67 HNINLVVVGPE--LPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAK----SFIQ 140 (788)
T ss_pred cceeEEEECCc--hhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHH----HHHH
Confidence 45666665432 11123477899999999999999999999999999999999999999999998765433 3333
Q ss_pred hcCCCCCC-CcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 242 TNKLDPNS-GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 242 ~~~l~~~~-~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
. .. .++|||..-...++||.+..+.+|+.+++..++.. .-...++|||+++| .|+++-.+-|+..
T Consensus 141 ~-----~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~s---- 210 (788)
T KOG0237|consen 141 S-----ATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGYS---- 210 (788)
T ss_pred h-----CCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEEecCcc----
Confidence 2 34 47999999999999999999999999998887642 13468999999998 9999999965432
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHH-HHHHHHHHhCCCC--eeEeeee
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIRE-GASLLFQRLGLCD--FARIDGW 392 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~-~a~~~~~aLg~~G--~arVDf~ 392 (953)
...++|.. +..+.+|-+.--..++ +.-.+|++ .++++.+.+++ +.++..+-+--+| |..|=|-
T Consensus 211 ~~~mp~aQ------------DHKRl~dgD~GpNTGg-mGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfa 277 (788)
T KOG0237|consen 211 VRPLPPAQ------------DHKRLGDGDTGPNTGG-MGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFA 277 (788)
T ss_pred cccCCccc------------chhhhcCCCCCCCCCC-ccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEee
Confidence 22344431 2345666554444444 44457776 56665555443 3333333332222 3333221
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcc
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S 431 (953)
.++++++| +.+||-|.+-|=-.+-
T Consensus 278 --------------GlMl~k~~-P~vLEfN~RFGDPEtQ 301 (788)
T KOG0237|consen 278 --------------GLMLTKDG-PKVLEFNVRFGDPETQ 301 (788)
T ss_pred --------------eeEEecCC-ccEEEEecccCCchhh
Confidence 24567888 9999999999865553
|
|
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=122.32 Aligned_cols=211 Identities=16% Similarity=0.149 Sum_probs=137.0
Q ss_pred EEecCCCCCCcc----HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHH
Q 002207 639 FIAVHGGIGEDG----TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714 (953)
Q Consensus 639 f~~~hG~~GEdg----~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~ 714 (953)
|+++.++.||-- ....|-+.+.||| ++..-.+...+|-..... +.+.|+|.|.++.+++..
T Consensus 75 ~LLva~GDgev~lvSq~reeLSa~f~v~l--p~w~~l~wlceKPllY~r---a~elgl~~P~Ty~v~S~~---------- 139 (415)
T COG3919 75 YLLVACGDGEVLLVSQYREELSAFFEVPL--PDWALLRWLCEKPLLYNR---AEELGLPYPKTYLVNSEI---------- 139 (415)
T ss_pred eEEEecCCceeeehHhhHHHHHHHhcCCC--CcHHHHHHHhhCcHHHHH---HHHhCCCCcceEEecchh----------
Confidence 455566667632 3456777788997 567777777788888887 899999999999998642
Q ss_pred HHHHhhcCCCcEEEecCCCCC--CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 715 HELTSKLQCKTLCVKPARDGC--STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 715 ~~~~~~lg~~PlvVKP~~~gs--S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
+....++ .||+|.||..+|| +.+-.++-..+|-+++..|+-.+...+ .++.++||+||+|
T Consensus 140 d~~~~el-~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei-----------------gpDnvvvQe~IPG 201 (415)
T COG3919 140 DTLVDEL-TFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEI-----------------GPDNVVVQEFIPG 201 (415)
T ss_pred hhhhhhe-eeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhc-----------------CCCceEEEEecCC
Confidence 2234567 7999999999885 344445544555555445666665543 2688999999998
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
- +++ -++...+-+++..+..+-. .....|...+-.+.+....| +
T Consensus 202 G-----------gE~-----------qfsyaAlw~~g~pvaefta------rr~rqyPvdfgytst~vevv------D-- 245 (415)
T COG3919 202 G-----------GEN-----------QFSYAALWDKGHPVAEFTA------RRLRQYPVDFGYTSTVVEVV------D-- 245 (415)
T ss_pred C-----------Ccc-----------cchHHHHHhCCCchhhhhc------chhhcCCcccccccEEEEec------C--
Confidence 4 111 2333333333332211111 11111221121222332332 1
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.+++.+.|+++.+.++-.|++.+||..|++||...++|||++|+-.
T Consensus 246 -n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~w 291 (415)
T COG3919 246 -NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRW 291 (415)
T ss_pred -cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcce
Confidence 3466778888899999999999999999999999999999999743
|
|
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=123.69 Aligned_cols=226 Identities=14% Similarity=0.159 Sum_probs=132.3
Q ss_pred CCcEEEEecCCCCCCcc--HHH-------HHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 634 NQATVFIAVHGGIGEDG--TLQ-------SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg--~iq-------~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
.+|+||+---..+..++ .+. .++|..|++.+ +++.+...|.||..+..+ ++ +++|++.+....
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l---~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSF---PE---EVRPTTHISRNK- 150 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhh---cc---CCCCCEEEeCCH-
Confidence 36899987644443322 122 34467899876 778999999999999765 33 678888765432
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc--HHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED--LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~e--L~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
+.+.++.+++++.|+||||..+.+|.||.++.+.++ +.. .++. +.. ..
T Consensus 151 -------~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~---ile~-~~~-------------------~~ 200 (338)
T PRK12458 151 -------EYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQ---ILEF-YSG-------------------DG 200 (338)
T ss_pred -------HHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHH---HHHH-Hhh-------------------CC
Confidence 224445566732359999999999999999986664 332 2222 111 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC---ceE-EEecCCccccccccccCCCc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM---PSV-TVKESGDILSLEEKFQGGTG 858 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~---p~~-~i~~~~~~~d~~~Ky~~g~~ 858 (953)
.+|+|+||++.+ + .|+.+-++++. ..... +.+ ++...+ ++......|..
T Consensus 201 ~~ivQeyI~~~~-----------------~-----gDiRv~vv~g~--~v~~~g~~~a~~R~~~~~---d~RsN~~~Gg~ 253 (338)
T PRK12458 201 YVIAQEYLPGAE-----------------E-----GDVRILLLNGE--PLERDGHYAAMRRVPAGG---DVRSNVHAGGS 253 (338)
T ss_pred CEEEEEcccCCC-----------------C-----CCEEEEEECCE--EEeeccceeEEEEecCCC---CeeecccCCCc
Confidence 799999998630 1 17777777653 11000 222 222222 33333333332
Q ss_pred eeEcCCCCCCCCHHHHHHHHHHHHHHHHHc---CCcceEEEEEEEEcCCCcEEEEeeCC-CCC-CCCCchHHHHHHhcCC
Q 002207 859 INLTPPPASIMSTEALDKCKQRIELIANAL---QLEGFSRIDAFVNVDNGEVLIIEVNT-VPG-MTPSTVLIHQALSEQP 933 (953)
Q Consensus 859 ~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL---g~~G~ariDf~v~~~~g~~~viEINt-~PG-lt~~S~l~~~a~~~~~ 933 (953)
..+.. +++ +++++|.++..+| |+. +++||++ . + +|+|||. .|| +.. ..+..|
T Consensus 254 --~~~~~---l~~----~~~~ia~~~~~~l~~~GL~-~~gVDli-~---~--~l~EIN~~sp~g~~~-------~~~~~g 310 (338)
T PRK12458 254 --VVKHT---LTK----EELELCEAIRPKLVRDGLF-FVGLDIV-G---D--KLVEVNVFSPGGLTR-------INKLNK 310 (338)
T ss_pred --ccCcC---CCH----HHHHHHHHHHHHHhhcCCe-EEeEEEE-C---C--EEEEEeCCCcchHHH-------HHHHhC
Confidence 22332 343 4566667776666 554 8999985 2 2 6899997 573 322 122234
Q ss_pred CCCHHHHHHHHHHH
Q 002207 934 PMYPHQFFRKVLDL 947 (953)
Q Consensus 934 ~~yp~~l~~~li~~ 947 (953)
..++..+++.+.+.
T Consensus 311 ~d~a~~i~~~i~~~ 324 (338)
T PRK12458 311 IDFVEDIIEALERK 324 (338)
T ss_pred CCHHHHHHHHHHHH
Confidence 45666666655443
|
|
| >KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-10 Score=126.15 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=151.9
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
-|.+.|...|||+.||+..+.++..+|.++|.+ +.++||||+.|..++..+ ....+.......++|||.
T Consensus 83 Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~f---m~r~~IPTA~y~~ft~~e--------~a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237|consen 83 GLADVLRSAGIPCFGPSKQAAQLEASKNFSKDF---MHRHNIPTAKYKTFTDPE--------EAKSFIQSATDKALVIKA 151 (788)
T ss_pred hhhhhhhccCcceeCchHHHHHhhhhHHHHHHH---HHhcCCCcceeeeeCCHH--------HHHHHHHhCCCcceEEee
Confidence 366778899999999999999999999999999 899999999999988754 234455566335799999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
.-...+.||.+..+.+| +.+|++..+.. ..+. .....++||||++|+
T Consensus 152 dGLAAGKGViv~~~~~E---A~eAv~sIl~~---~~fg----------~AG~tvViEE~LEGe----------------- 198 (788)
T KOG0237|consen 152 DGLAAGKGVIVAKSKEE---AFEAVDSILVK---KVFG----------SAGKTVVIEELLEGE----------------- 198 (788)
T ss_pred cccccCCceEeeccHHH---HHHHHHHHHhh---hhhc----------cccceEehhhhcCcc-----------------
Confidence 99999999999876555 34566666532 0111 125789999999998
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHH-HHHHHHc-
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRI-ELIANAL- 888 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a-~~~~~aL- 888 (953)
|+++-.+.++.....++|.-. ....++-+---+.|.+..++|+|. .++++++.+++.+ ++..+-|
T Consensus 199 --------EvS~laftDG~s~~~mp~aQD---HKRl~dgD~GpNTGgmGaY~paPv--~s~~ll~~v~~~I~~~Tv~Gm~ 265 (788)
T KOG0237|consen 199 --------EVSFLAFTDGYSVRPLPPAQD---HKRLGDGDTGPNTGGMGAYAPAPV--ASPKLLDTVQSTIIEPTVDGMA 265 (788)
T ss_pred --------eEEEEEEecCcccccCCcccc---hhhhcCCCCCCCCCCccccccCCc--cCHHHHHHHHHHHhhHhhhHHH
Confidence 999998888655555555432 234555454455566677899886 6788777776543 3444433
Q ss_pred --C--CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 889 --Q--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 889 --g--~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
| +.|+.---+++.. +| +.++|-|-+=|=-..
T Consensus 266 ~eg~~y~GVLfaGlMl~k-~~-P~vLEfN~RFGDPEt 300 (788)
T KOG0237|consen 266 EEGIPYVGVLFAGLMLTK-DG-PKVLEFNVRFGDPET 300 (788)
T ss_pred hcCCceeeEEeeeeEEec-CC-ccEEEEecccCCchh
Confidence 2 3355556677774 44 999999987665443
|
|
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-11 Score=123.50 Aligned_cols=207 Identities=17% Similarity=0.133 Sum_probs=133.3
Q ss_pred HHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCC
Q 002207 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260 (953)
Q Consensus 181 iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~g 260 (953)
..++-+.+.||+. +-.-..--.+|-.....+.+.|+|.|.++.+++..+. . .+++.||+|.||..+|
T Consensus 92 reeLSa~f~v~lp--~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~------~-----~~el~FPvILKP~mgg 158 (415)
T COG3919 92 REELSAFFEVPLP--DWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDT------L-----VDELTFPVILKPGMGG 158 (415)
T ss_pred HHHHHHHhcCCCC--cHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhhh------h-----hhheeeeEEecCCCCC
Confidence 3467777788874 5666777778999999999999999999999854321 1 1247899999999999
Q ss_pred C--ceeEE---EeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeE--EEEEEEEeCCCCccccEEecceEEEEeccCcc
Q 002207 261 S--SIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE--FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV 333 (953)
Q Consensus 261 s--S~GV~---~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E--~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~ 333 (953)
| +.+-. .+.+.+|+..+..+...+.+.+.++||+||+||-| ++...+= ++++|++-..+..
T Consensus 159 ~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw----~~g~pvaeftarr-------- 226 (415)
T COG3919 159 SVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALW----DKGHPVAEFTARR-------- 226 (415)
T ss_pred cceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHH----hCCCchhhhhcch--------
Confidence 7 22222 23455665444434334456789999999999776 2322221 2345553222111
Q ss_pred ccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccC
Q 002207 334 DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413 (953)
Q Consensus 334 ~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~d 413 (953)
...|-..+--+. +....| + .+++.+.|+++...++..|++.|||.+++ .|
T Consensus 227 -------~rqyPvdfgyts-t~vevv----D--n~Q~i~aar~~L~si~htGlvevefK~D~----------------RD 276 (415)
T COG3919 227 -------LRQYPVDFGYTS-TVVEVV----D--NQQVIQAARDFLESIEHTGLVEVEFKYDP----------------RD 276 (415)
T ss_pred -------hhcCCccccccc-EEEEec----C--cHHHHHHHHHHHHhhcccceEEEEEEecC----------------CC
Confidence 111221111111 222222 2 34567788899999999999999999853 58
Q ss_pred CcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHH
Q 002207 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 447 (953)
Q Consensus 414 G~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~l 447 (953)
|.+.++|||++|+ ..+. .+.++|++...+
T Consensus 277 Gs~KlldvNpRpw--~wfg---l~taaG~nLg~~ 305 (415)
T COG3919 277 GSYKLLDVNPRPW--RWFG---LVTAAGYNLGRY 305 (415)
T ss_pred CceeEEeecCCCc--ceee---EEecccccccce
Confidence 9999999999999 2222 345778875433
|
|
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=122.16 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=123.5
Q ss_pred CCcEEEEecCCCCCCcc----HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 634 NQATVFIAVHGGIGEDG----TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg----~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
.+|+||+--...+.+.- .+-..+|..|++++ +++.+.+.|.||.++.++ + .++|++....+.
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~---~----~~vP~T~v~~~~------ 143 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQF---P----KVIPPTLVTRDK------ 143 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhC---c----CCCCCEEEeCCH------
Confidence 36999988755544322 46677888999876 567889999999998765 3 279998765432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
+.+.++.++.+ |+|+||..++++.||.++... .++..+ .+..... ....+++|+
T Consensus 144 --~~~~~~~~~~g--~vVvKPl~G~~G~gv~~v~~~~~~~~~~----~~~~~~~-----------------~~~~~~vQ~ 198 (312)
T TIGR01380 144 --AEIRAFLAEHG--DIVLKPLDGMGGEGIFRLDPGDPNFNSI----LETMTQR-----------------GREPVMAQR 198 (312)
T ss_pred --HHHHHHHHHcC--CEEEEECCCCCCceEEEEcCCCccHHHH----HHHHHhc-----------------cCCcEEEEe
Confidence 22445566773 999999999999999999753 234322 1222110 035799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc-eEEEecCCccccccccccCCCceeEcCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SVTVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p-~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
||+.. ++ .|+.|-|+++. +.+ .+.-.+..+ +|......|.. ..|.+
T Consensus 199 yI~~~------------------~~----~D~Rv~vv~g~-----vv~~ai~R~~~~g--d~r~N~~~Gg~--~~~~~-- 245 (312)
T TIGR01380 199 YLPEI------------------KE----GDKRILLIDGE-----PIGAAVARIPAGG--EFRGNLAVGGR--GEATE-- 245 (312)
T ss_pred ccccc------------------cC----CCEEEEEECCe-----EEEEEEEecCCCC--CccccccCCce--eeccC--
Confidence 99742 00 28888888753 222 232222221 34444444432 33433
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~ 915 (953)
++++. .++.+.+...++++|+. |++||++ | .||+|||..
T Consensus 246 -l~~e~-~~ia~~~~~~~~~~gl~-~agVDii-----g-~~v~EvN~~ 284 (312)
T TIGR01380 246 -LSERD-REICADVAPELKRRGLL-FVGIDVI-----G-GYLTEVNVT 284 (312)
T ss_pred -CCHHH-HHHHHHHHHHHHhcCCc-EEEEEEe-----C-CEEEEEecC
Confidence 34432 23333333334666775 9999986 2 379999964
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=123.19 Aligned_cols=196 Identities=22% Similarity=0.222 Sum_probs=130.2
Q ss_pred hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChH-HHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM-ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~-as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+.+|+.++-+.|..-.+-+.. ++.++.|+++. ...-..+|..+.+. +..+|.|-|+......
T Consensus 80 ~~~dvD~~ii~~sg~e~l~~~g~-----~~~~v~~n~P~~~v~~~snk~~~~r~---l~~lgmp~p~~~~~e~------- 144 (389)
T COG2232 80 LAEDVDAPIIPFSGFEALRTSGE-----LGCEVAGNEPEVKVVEASNKLKFYRK---LEVLGMPEPSEKKIEP------- 144 (389)
T ss_pred hhhhcceeeeeccccccccccCc-----cccccccCCcHHHHHHHHHHHhhhhh---hhhcCCCCChhhhhhh-------
Confidence 45667887777777655543322 45778888888 67777899999887 8999999998654321
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+ ..+.+++|.||..|+|+. +.++.-.++. +...+|+|+|
T Consensus 145 -------~--~~gekt~IlKPv~GaGG~-~el~~~~Ee~-------------------------------~~~~~i~Qef 183 (389)
T COG2232 145 -------L--EEGEKTLILKPVSGAGGL-VELVKFDEED-------------------------------PPPGFIFQEF 183 (389)
T ss_pred -------h--hhcceeeEEeeccCCCce-eeeccccccc-------------------------------CCcceehhhh
Confidence 1 112479999999998874 2222110110 0367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec-CCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~-~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. -+++++++++.....+.-...+.. ..+.|. .-.|. .+++|.+.
T Consensus 184 i~G~-------------------------p~Svs~is~g~~a~~la~N~QiI~~~~~~~~-~f~Y~----GNlTP~~~-- 231 (389)
T COG2232 184 IEGR-------------------------PVSVSFISNGSDALTLAVNDQIIDGLRGEYS-QFVYK----GNLTPFPY-- 231 (389)
T ss_pred cCCc-------------------------eeEEEEEecCcceEEEEEeeeeecccccccc-cceec----cCcCCCcc--
Confidence 9997 889999988655332222222221 111111 00122 34678762
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.+ .+++.++|..+...||+.|...|||.+++ ..+||+||||++--|
T Consensus 232 --~~-~ee~e~la~elV~~lgL~GsnGVDfvl~d--~gpyViEVNPR~qGt 277 (389)
T COG2232 232 --EE-VEEAERLAEELVEELGLVGSNGVDFVLND--KGPYVIEVNPRIQGT 277 (389)
T ss_pred --hh-hHHHHHHHHHHHHHhccccccccceEeec--CCcEEEEecCcccch
Confidence 33 37889999999999999999999999983 459999999766433
|
|
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-09 Score=117.26 Aligned_cols=197 Identities=14% Similarity=0.173 Sum_probs=121.7
Q ss_pred CcEEEEecCCCCCCc----cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 635 QATVFIAVHGGIGED----GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 635 ~dvvf~~~hG~~GEd----g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
+|+||+-.+-.+.+. ..+-..++..|+++.. ++.+...|.||..+.++ +. ++|++....+.
T Consensus 80 ~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N-~p~~l~~~~dK~~~~~l---~~----~vP~T~~~~~~------- 144 (316)
T PRK05246 80 FDVILMRKDPPFDMEYIYATYLLERAERPGTLVVN-KPQSLRDANEKLFTLWF---PE----LMPPTLVTRDK------- 144 (316)
T ss_pred CCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEEC-CHHHHHhCccHHHHHhh---hc----cCCCEEEeCCH-------
Confidence 799997654444431 2355677878998875 46788999999999776 33 78998765532
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCC-cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC-AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~-~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.++.+ |+|+||..+.++.||.++.. ..++..+.+. +... ....+|+|+|
T Consensus 145 -~~~~~~~~~~~--~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~----l~~~-----------------~~~~~lvQ~~ 200 (316)
T PRK05246 145 -AEIRAFRAEHG--DIILKPLDGMGGAGIFRVKADDPNLGSILET----LTEH-----------------GREPVMAQRY 200 (316)
T ss_pred -HHHHHHHHHCC--CEEEEECCCCCccceEEEeCCCccHHHHHHH----HHHc-----------------cCCeEEEEec
Confidence 22445566673 99999999999999999954 3444432222 2210 0367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc-eE-EEecCCccccccccccCCCceeEcCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SV-TVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p-~~-~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
|+... . .++.|-++++. +.+ .+ ++...+ +|......|.. ..|.+
T Consensus 201 I~~~~-----------------~-----~D~Rv~vv~g~-----vv~~a~~R~~~~~---~~rtN~~~Gg~--~~~~~-- 246 (316)
T PRK05246 201 LPEIK-----------------E-----GDKRILLVDGE-----PVGYALARIPAGG---ETRGNLAAGGR--GEATP-- 246 (316)
T ss_pred cccCC-----------------C-----CCEEEEEECCE-----EhhheeEecCCCC---CcccCccCCce--EeccC--
Confidence 97520 1 27788887532 233 22 332222 34444444432 33444
Q ss_pred CCCHHHHHHHHHHHHHHH---HHcCCcceEEEEEEEEcCCCcEEEEeeCCC-C
Q 002207 868 IMSTEALDKCKQRIELIA---NALQLEGFSRIDAFVNVDNGEVLIIEVNTV-P 916 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~---~aLg~~G~ariDf~v~~~~g~~~viEINt~-P 916 (953)
++++ .+++|.+++ +.+|+. +++||+. |. ||+|||.. |
T Consensus 247 -l~~~----~~~ia~~~~~~l~~~gl~-~~GVDli-----~~-~l~EvN~~~p 287 (316)
T PRK05246 247 -LTER----DREICAAIGPELKERGLI-FVGIDVI-----GD-YLTEINVTSP 287 (316)
T ss_pred -CCHH----HHHHHHHHHHHHHHhCCC-EEEEEEe-----CC-EEEEEeCCCc
Confidence 3443 344444444 566664 8999985 22 79999964 5
|
|
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=126.23 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=123.4
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeC----CCCCceeEEEeCCHHHHHHHHH
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPT----RAGSSIGVTVAYGVIDSLKKAK 279 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~----~~gsS~GV~~v~~~~el~~~a~ 279 (953)
+.+.+|++|+++|||||++..+.+.++ +.+.++ .++ ||+||||. ..|++-||.++++.+++.+++.
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~e----a~~~~~-----~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~ 74 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEE----AEEIAA-----KLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAE 74 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHH-----HhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHH
Confidence 567899999999999999998865432 223332 256 89999998 3444569999999999888777
Q ss_pred HhHhcC-----CC------CcEEEeccCCCCeEEEEEEEEeCCCCccccEEecc--e--EEEEeccC------ccccccC
Q 002207 280 GIILEG-----ID------DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP--T--EVELQFQG------SVDVREK 338 (953)
Q Consensus 280 ~~~~~~-----~~------~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~--~--ei~~~~~~------~~~~~~~ 338 (953)
+++... ++ ..+|||+|+.+++|++++++.+... ..|+++.- | .++...+. ...+.+.
T Consensus 75 ~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~--~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~ 152 (386)
T TIGR01016 75 KLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSA--RCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPL 152 (386)
T ss_pred HHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCC--CceEEEEECCCCccHHHHhhhCccceEEEEcCCC
Confidence 765311 11 3699999999559999999986421 23433211 0 00000000 0012224
Q ss_pred CcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEE
Q 002207 339 DAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418 (953)
Q Consensus 339 ~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~ 418 (953)
..+++|+++|... +..++....+.+.+++.++++.+.-.++.-+|+ +| +.++++|+++.
T Consensus 153 ~~~~~~~a~~~~~-------~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEI--NP------------l~v~~~g~~~a 211 (386)
T TIGR01016 153 TGLLPYQAREIAK-------KLGLEGELVKQVADIIKKLYQIFLEYDASLVEI--NP------------LVITKDGNLIA 211 (386)
T ss_pred cCCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEe--ee------------eEEcCCCCEEE
Confidence 5688888887532 445788889999999999999988666777773 32 44566766666
Q ss_pred Eeec
Q 002207 419 TDIN 422 (953)
Q Consensus 419 lEIN 422 (953)
++..
T Consensus 212 ~Dak 215 (386)
T TIGR01016 212 LDAK 215 (386)
T ss_pred Eeee
Confidence 6654
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.4e-08 Score=112.28 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC-CcEEEecC----CCCCCcceEEeCCcccHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC-KTLCVKPA----RDGCSTGVARLCCAEDLTV 750 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~-~PlvVKP~----~~gsS~GV~~v~~~~eL~~ 750 (953)
+.+.+|++ |+++|||||++..+.+.+ .+.++.+++ + ||+||||. ..|++-||.++.+.+++.+
T Consensus 4 ~E~~aK~l---l~~~GIpvp~~~~~~~~~--------ea~~~~~~i-g~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 4 HEYQAKQI---FAKYGIPVPRGYVATSVE--------EAEEIAAKL-GAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARA 71 (386)
T ss_pred cHHHHHHH---HHHcCCCCCCceeeCCHH--------HHHHHHHHh-CCCcEEEEecccCCCCccCceEEEeCCHHHHHH
Confidence 46778888 999999999998886532 234455678 6 99999998 3445569999988888765
Q ss_pred HHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-
Q 002207 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG- 829 (953)
Q Consensus 751 ~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~- 829 (953)
++++.+.. .+.... ...+......+|||+|+++. +|+.++++.+..
T Consensus 72 ---a~~~l~~~----~~~~~~--~~~~g~~~~~vlVEe~v~~g------------------------~E~~v~i~~d~~~ 118 (386)
T TIGR01016 72 ---AAEKLLGK----ELVTNQ--TDPLGQPVNKILIEEATDID------------------------KEYYLSIVIDRSA 118 (386)
T ss_pred ---HHHHHhcc----ceeecc--cCCCCCEeeEEEEEECccCC------------------------ceEEEEEEEcCCC
Confidence 44444321 000000 00000112579999999932 399999998742
Q ss_pred -CceeeCc-------------------eEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 830 -SMHSLMP-------------------SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 830 -~~~~~~p-------------------~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
.+..+.+ .+.+.+..++++|+.++..+ +.. ++....+.+.+.+.++++.+.
T Consensus 119 ~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~~~~~------~l~---~~~~~~~~l~~~l~~l~~~~~ 189 (386)
T TIGR01016 119 RCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAK------KLG---LEGELVKQVADIIKKLYQIFL 189 (386)
T ss_pred CceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHHHHHH------HcC---CCHHHHHHHHHHHHHHHHHHH
Confidence 1221212 33344456688888877533 222 356778899999999998887
Q ss_pred CcceEEEEE---EEEcCCCcEEEEee
Q 002207 890 LEGFSRIDA---FVNVDNGEVLIIEV 912 (953)
Q Consensus 890 ~~G~ariDf---~v~~~~g~~~viEI 912 (953)
-.++.-+|+ +++. +|+++.+..
T Consensus 190 ~~~~~~lEINPl~v~~-~g~~~a~Da 214 (386)
T TIGR01016 190 EYDASLVEINPLVITK-DGNLIALDA 214 (386)
T ss_pred hCCceEEEeeeeEEcC-CCCEEEEee
Confidence 655666663 3443 566665553
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.6e-07 Score=97.44 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=116.3
Q ss_pred CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCC---chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe
Q 002207 666 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT---PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742 (953)
Q Consensus 666 ~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~---~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v 742 (953)
.+.....+..||..++++ +.++|||||+.......++... ...+.+.++.......++|+||+.+.++.||.++
T Consensus 16 N~~~~~~l~~DK~~~~~l---~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i 92 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQL---FRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVI 92 (285)
T ss_pred CchhhccccCCHHHHHHH---HHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEE
Confidence 344566788999999999 8999999999433222222111 1223344454443247999999999999999998
Q ss_pred CCccc--HHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEE
Q 002207 743 CCAED--LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEI 820 (953)
Q Consensus 743 ~~~~e--L~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Ei 820 (953)
...+. +..-...+....... ....+|||++|.-.+..- .+.-.+- ..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~liqe~i~qh~~~~----------~~~~~sv---nTi 142 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESL-----------------GGKDYLIQERIEQHPELA----------ALSPSSV---NTI 142 (285)
T ss_pred EeecCcccccchhHHHHHHHhc-----------------CCccEEEEecccCCHHHH----------hhCCCCC---CcE
Confidence 76652 111001222221110 012799999997543211 0000010 133
Q ss_pred EEEEEcCCCCceeeCceEEEe-------------------cCCcccccccccc-CCCceeEcCCCC---CCCCHHHHHHH
Q 002207 821 TVGVIGKCGSMHSLMPSVTVK-------------------ESGDILSLEEKFQ-GGTGINLTPPPA---SIMSTEALDKC 877 (953)
Q Consensus 821 tv~vl~~~~~~~~~~p~~~i~-------------------~~~~~~d~~~Ky~-~g~~~~~~P~~~---~~l~~~~~~~i 877 (953)
.|..+-+.+....+...+++. ...++-.+. -|. .+......|-.. ....-.--+++
T Consensus 143 RvvT~~~~~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~-~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~ 221 (285)
T PF14397_consen 143 RVVTFLDDGEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFA-GYDQDGERYEHHPDTGAPFSGFQIPNWDEI 221 (285)
T ss_pred EEEEEEeCCeeEEEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccc-cccCCCCEeeeCCCCCCccCCccCCCHHHH
Confidence 333332222222222222221 111111110 010 011111122110 00011235788
Q ss_pred HHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC--CCCC
Q 002207 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV--PGMT 919 (953)
Q Consensus 878 ~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~--PGlt 919 (953)
.+.+.++++.+---++...|+.+++ +| +++||.|+. ||+.
T Consensus 222 ~~l~~~~~~~~p~~~~iGWDvait~-~G-p~llE~N~~~~pgl~ 263 (285)
T PF14397_consen 222 LELAKEAHRKFPGLGYIGWDVAITE-DG-PVLLEGNARWDPGLM 263 (285)
T ss_pred HHHHHHHHHHCCCCCeEEEEEEEcC-CC-cEEEEeeCCCCCCcH
Confidence 9999999988876679999999995 67 999999999 8875
|
|
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-06 Score=94.26 Aligned_cols=225 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCc-------cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEE
Q 002207 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE-------VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV 267 (953)
Q Consensus 195 s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~ 267 (953)
++.....+..||..+++++.+.|||+|+.+...... ...+.+.+++... ...++|+||+.|.+|.||.+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~viKP~~G~~G~Gi~~ 91 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH----APDRFVIKPANGSGGKGILV 91 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhc----cCCcEEEEeCCCCCccCEEE
Confidence 566788899999999999999999999944322211 1223444444321 23689999999999999998
Q ss_pred eCCHHH-----HHHHHHHhHhcCCCCcEEEeccCCC-----------CeEEEEEEEEeCCCCccccEEecceEEEEecc-
Q 002207 268 AYGVID-----SLKKAKGIILEGIDDRVVVELFLEG-----------GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ- 330 (953)
Q Consensus 268 v~~~~e-----l~~~a~~~~~~~~~~~vlVEefI~G-----------g~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~- 330 (953)
+...+. -.......+.......+|||++|.- -.-+++.++.++ +.+.++.. -..+...
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~----~~~~~~~a-~lRlg~~~ 166 (285)
T PF14397_consen 92 IDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD----GEVEVLMA-MLRLGRGG 166 (285)
T ss_pred EEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC----CeeEEEEE-EEEeCCCC
Confidence 764431 0111111111111128999999953 122444444321 11111111 0111100
Q ss_pred ----Ccc------ccccCCcccccccCccCCCceEEEcCC------CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 331 ----GSV------DVREKDAIFNYRRKYLPTQQVAYHTPP------RFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 331 ----~~~------~~~~~~~~~dy~~Ky~~~~~~~~~~Pa------~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
+.. .+....++..+. .|..........|. .+.-.-.+++.+.+.++++.+---++...|+.+
T Consensus 167 ~~~DN~~~Ggi~~~ID~~tGl~~~~-~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvai- 244 (285)
T PF14397_consen 167 SGVDNFHQGGIGVGIDLATGLGRFA-GYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAI- 244 (285)
T ss_pred CcccccCCCCEEEEEecCCCccccc-cccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEE-
Confidence 000 000011111111 11111101111221 111223688899999999998767899999876
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCC--CCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLI--SGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~--PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
|++| +.+||.|.. ||+.. + .+.|..+...+++++..
T Consensus 245 ----------------t~~G-p~llE~N~~~~pgl~~------~-~~~g~gl~~~~~~v~~~ 282 (285)
T PF14397_consen 245 ----------------TEDG-PVLLEGNARWDPGLMI------Q-IANGPGLFPRLQEVEGY 282 (285)
T ss_pred ----------------cCCC-cEEEEeeCCCCCCcHh------h-hccCcchHHHHHHHHHH
Confidence 7889 999999999 88642 1 23444444455555543
|
|
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-06 Score=91.93 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=186.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCC-CCccccccccccccCcc--
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP-ADFDFKLESLAQGFGSL-- 153 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 153 (953)
.++||.++ -.||.+|++..++.|+..+++- ..|+.-. +...+ .+ ++.+ ...|..+
T Consensus 18 ~i~Iat~g----------SHSaL~Il~GAK~EGF~Ti~v~--~~gr~~~------Y~~f~~a~-e~i~---v~~f~dil~ 75 (361)
T COG1759 18 DITIATIG----------SHSALQILDGAKEEGFRTIAVC--QRGREKP------YEKFPVAD-EVII---VDKFSDILN 75 (361)
T ss_pred ceEEEEee----------cchHHHHhhhHHhcCCcEEEEE--ecCccch------HHhhchhh-eEEE---echhHHHhh
Confidence 36888887 2479999999999999987653 3333211 10000 00 0000 0001000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+..+.+. .-+ ++.+-||.+-.--.+.+..+.+-+|+.|+...--. -.|...-..+|+++|++.|.-+ .+.+
T Consensus 76 ~~iqe~L~-~~n-~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrw-E~~~~~~~~lLekAgi~~P~~~--~~Pe--- 147 (361)
T COG1759 76 EEIQEELR-ELN-AIFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRW-EEDRKLEYKLLEKAGLRIPKKY--KSPE--- 147 (361)
T ss_pred HHHHHHHH-HcC-eEEecCCceEEEecchhhhhcccCcccccHhHhhh-hcchhhHHHHHHHcCCCCCccc--CChH---
Confidence 01122222 222 33445888877666778889999999998655433 3388888889999999999753 2221
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCC-----CCcEEEeccCCCCeEEEEEEEE
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI-----DDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~-----~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..|||||+...-++.|-+++.+.+|+.+++.+++..+. -..+.|||||-| .-+....+-
T Consensus 148 -------------eIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFy 213 (361)
T COG1759 148 -------------EIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFY 213 (361)
T ss_pred -------------HcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeee
Confidence 2456999999999889999999999999999988765321 136889999998 665555442
Q ss_pred eCCCCccccEEecceEEEEec-cCccccccCCcccccccCcc------CCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh
Q 002207 309 VGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYL------PTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~-~~~~~~~~~~~~~dy~~Ky~------~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL 381 (953)
. |+. .++++-. +.=.+.+ -++++..-++++ +..-..-+.|+.+-+.+...+-+++.+..++-
T Consensus 214 S-------~i~---~~lEl~g~D~R~Esn-~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~ 282 (361)
T COG1759 214 S-------PIK---DRLELLGIDRRYESN-LDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEAT 282 (361)
T ss_pred c-------ccc---CceeEeeeeheeecc-chhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 1 000 1111110 0000000 112222222221 11112223577777777777778877777653
Q ss_pred ------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC------CCCCcchHHHHHHHhCCCHHHHHH
Q 002207 382 ------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS------GMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 382 ------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P------G~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
|+.|....+.++ |+|=++++.||-++- +|. .|-|..+....++|..+=|.
T Consensus 283 kel~~PG~iGpFcLq~~~-----------------t~dl~~vVfevS~Ri~gGTNv~~~-GspYs~l~~~~pms~GrRIA 344 (361)
T COG1759 283 KELVPPGIIGPFCLQTIV-----------------TDDLEFVVFEVSARIVGGTNVYMG-GSPYSNLYWGEPMSTGRRIA 344 (361)
T ss_pred HHhcCCCcccceeeeeee-----------------cCCccEEEEEEeccccCCcccccC-CCcchhhhcCCCcchhhHHH
Confidence 677888889876 667789999998633 333 45555555556777777777
Q ss_pred HHHHHHhhh
Q 002207 450 TIIGHACSR 458 (953)
Q Consensus 450 ~li~~a~~r 458 (953)
+=|..|.++
T Consensus 345 ~EIk~A~e~ 353 (361)
T COG1759 345 REIKEAIEL 353 (361)
T ss_pred HHHHHHHHh
Confidence 777777665
|
|
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=96.28 Aligned_cols=223 Identities=17% Similarity=0.176 Sum_probs=125.6
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHc-CCCEeCCChHHHHHhcChHHHHHHHHHHH----HCCCCccCeEEEeCccccCC
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAE-GVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKT 708 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~-gIPy~G~~~~as~l~~DK~~tk~~~~~l~----~~GIptp~~~~v~~~~~~~~ 708 (953)
.+|+++-=+.+... -..+|.+.+.. +++.+- ++.+....+|+..|.+++..+. ...|.+|++..+.+..
T Consensus 52 pfDvIlHKltd~~~-~~~l~~y~~~hP~v~viD-p~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~---- 125 (307)
T PF05770_consen 52 PFDVILHKLTDEDW-VQQLEEYIKKHPEVVVID-PPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA---- 125 (307)
T ss_dssp -SCEEEE--CHCHH-HHHHHHHHHH-TTSEEET--HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH----
T ss_pred CcEEEEEeCCCHHH-HHHHHHHHHHCCCeEEEc-CHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH----
Confidence 35887766655111 12566666653 677664 4578899999999988855443 2377899999988532
Q ss_pred chhhHHHHH-HhhcCCCcEEEecCCCC---CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 709 PIVDIWHEL-TSKLQCKTLCVKPARDG---CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 709 ~~~~~~~~~-~~~lg~~PlvVKP~~~g---sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
.+..+.+ .+.| .||+|+||.... .|..+.++.+.+.|..+ ..++
T Consensus 126 --~~~~~~l~~agL-~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-----------------------------~~P~ 173 (307)
T PF05770_consen 126 --ESLPELLKEAGL-KFPLICKPLVACGSADSHKMAIVFNEEGLKDL-----------------------------KPPC 173 (307)
T ss_dssp --CCHHHHHHCTTS--SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-------------------------------SSE
T ss_pred --HHHHHHHHHCCC-cccEEeeehhhcCCccceEEEEEECHHHHhhc-----------------------------CCCE
Confidence 1122222 3578 799999997643 46788899999998641 3568
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec------CCccccccc--cccCC
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE------SGDILSLEE--KFQGG 856 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~------~~~~~d~~~--Ky~~g 856 (953)
++||||.-. | +=+-|-|+|+.-.. ..-+++.-.. ...+|++.. +....
T Consensus 174 VlQeFVNHg-------------------g----vLfKVyVvGd~v~~-v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~ 229 (307)
T PF05770_consen 174 VLQEFVNHG-------------------G----VLFKVYVVGDKVFV-VKRPSLPNVSSGKLDREEIFFDFHQVSKLESS 229 (307)
T ss_dssp EEEE----T-------------------T----EEEEEEEETTEEEE-EEEE------SSS-TCGGCCCEGGGTCSTTTS
T ss_pred EEEEeecCC-------------------C----EEEEEEEecCEEEE-EECCCCCCCCcccccccccceeccccCCcccc
Confidence 999999743 1 46777788764111 1111211111 123455432 11111
Q ss_pred Cce-eEc--CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC-CcEEEEeeCCCCCCCCCc
Q 002207 857 TGI-NLT--PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-GEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 857 ~~~-~~~--P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~-g~~~viEINt~PGlt~~S 922 (953)
... ..- +.... +++ .+.++++|..+-++||+. +.++|++++..+ |+.||++||-.||....-
T Consensus 230 ~~~~~~d~~~~~~~-~p~--~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp 295 (307)
T PF05770_consen 230 SDLSDLDKDPSQVE-MPP--DELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYVIDINYFPGYKKVP 295 (307)
T ss_dssp SGGGSBSS-TTTTT-S----HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEEEEEEES--TTTSC
T ss_pred CchhhcccCccccc-CCC--HHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEEEEeccCCCccCCC
Confidence 100 011 11111 111 346788999999999998 888999998767 789999999999998763
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=99.43 Aligned_cols=99 Identities=20% Similarity=0.152 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCC-CCcEEEeeCC--CCCce--eEEEeCCHHHHHHHH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKVVVKPTR--AGSSI--GVTVAYGVIDSLKKA 278 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~PvvVKP~~--~gsS~--GV~~v~~~~el~~~a 278 (953)
.+++.+|++|+++|||+|++.++.+.++ +.+... .+ +||+||||.. +|.|. ||.++.+.+++.+.+
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~~~~~~~e----a~~~a~-----~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~ 73 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGIVATTPEE----AVEAAE-----ELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFA 73 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeCCHHH----HHHHHH-----HcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHH
Confidence 4688999999999999999998876543 222222 25 7899999974 33333 999999999998888
Q ss_pred HHhHhcCC--------C---CcEEEeccCCCCeEEEEEEEEeCC
Q 002207 279 KGIILEGI--------D---DRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 279 ~~~~~~~~--------~---~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
.+++.... + ..++||+++++++|+.+++..|..
T Consensus 74 ~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~ 117 (388)
T PRK00696 74 KQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRA 117 (388)
T ss_pred HHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCC
Confidence 77764311 1 259999999966999999998653
|
|
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-06 Score=93.44 Aligned_cols=222 Identities=17% Similarity=0.232 Sum_probs=124.9
Q ss_pred CcCEEEEcCCCCCCCc--hHHHHHHHcC-CccEECCCHHHHHHhccHHHHHHHHHHC-------CCCCCCeEEecCCccc
Q 002207 163 NVDIVFPTIHGRFGED--GGIQEVLEKY-NVPFVGTGSRACRQAFDKYDASLEMSKQ-------GFITVPSFLLQGSEVN 232 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEd--g~iq~lle~~-gIpyvGs~~~a~~i~~DK~~~k~~l~~~-------Giptp~~~~~~~~~~~ 232 (953)
.+|+|+-=+.+ ++ ..+|++.+.+ +++++ -++.+....+|+..+.+++++. .|.+|++..+.+...
T Consensus 52 pfDvIlHKltd---~~~~~~l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~- 126 (307)
T PF05770_consen 52 PFDVILHKLTD---EDWVQQLEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAE- 126 (307)
T ss_dssp -SCEEEE--CH---CHHHHHHHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHC-
T ss_pred CcEEEEEeCCC---HHHHHHHHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHH-
Confidence 46887776654 22 3466666664 67776 4678999999999999888764 688999999885422
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCC---ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-CCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGS---SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-GGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gs---S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-Gg~E~tv~Vl~ 308 (953)
++.+..+. ..+.||+|+||....| |-.+.++.+.+.+.+ ....+++||||. ||.=|-|-|+|
T Consensus 127 --~~~~~l~~---agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~---------L~~P~VlQeFVNHggvLfKVyVvG 192 (307)
T PF05770_consen 127 --SLPELLKE---AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKD---------LKPPCVLQEFVNHGGVLFKVYVVG 192 (307)
T ss_dssp --CHHHHHHC---TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEET
T ss_pred --HHHHHHHH---CCCcccEEeeehhhcCCccceEEEEEECHHHHhh---------cCCCEEEEEeecCCCEEEEEEEec
Confidence 22222222 3478999999976543 678889999988542 245799999993 56999999994
Q ss_pred eCCCCccccEE--ecceEEEEeccCccccccCCcccccccC--ccCCCce-EEE-cCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 309 VGSGFDCHPVV--LLPTEVELQFQGSVDVREKDAIFNYRRK--YLPTQQV-AYH-TPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 309 ~~~g~~~~~v~--l~~~ei~~~~~~~~~~~~~~~~~dy~~K--y~~~~~~-~~~-~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+.-..+. +.|. +. . .+......+|++..- ....... ... .+......-.+.++++|..+-++||
T Consensus 193 ----d~v~~v~R~SLpn-~~--~---~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lg 262 (307)
T PF05770_consen 193 ----DKVFVVKRPSLPN-VS--S---GKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALG 262 (307)
T ss_dssp ----TEEEEEEEE---------S---SS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT
T ss_pred ----CEEEEEECCCCCC-CC--c---ccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhC
Confidence 3211111 1110 00 0 000001235555422 1111100 000 0221111123568899999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccC-CcEEEEeecCCCCCCCc
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQT 430 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~d-G~~~~lEIN~~PG~t~~ 430 (953)
+. +.++|+++. ..+ |++++++||-.||...-
T Consensus 263 L~-LFgfDvI~~----------------~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 263 LT-LFGFDVIRE----------------NGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp -S-EEEEEEEEG----------------CCT-SSEEEEEEEES--TTTS
T ss_pred cc-eeeeEEEEE----------------cCCCCcEEEEEeccCCCccCC
Confidence 98 999999863 345 78999999999997653
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-06 Score=90.05 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=121.5
Q ss_pred HHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHC-CCC--ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 655 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVL--TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 655 llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~-GIp--tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
+-+..|||+.+++ ..||+.+.+. |.+. .+. .|++..+.+.+ .+.++.++. --+++||.
T Consensus 3 ~k~~~~i~~~n~~------~~~Kw~v~~~---L~~~~~l~~~LP~T~~~~~~~--------~l~~~L~~y--~~vylKP~ 63 (262)
T PF14398_consen 3 LKKQKGIPFFNPG------FFDKWEVYKA---LSRDPELRPYLPETELLTSFE--------DLREMLNKY--KSVYLKPD 63 (262)
T ss_pred hHhcCCCEEeCCC------CCCHHHHHHH---HHcCCcchhhCCCceEcCCHH--------HHHHHHHHC--CEEEEEeC
Confidence 3467899999885 4699999998 6664 343 68887776532 234444444 26899999
Q ss_pred CCCCCcceEEeCCcc-------------------cHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 732 RDGCSTGVARLCCAE-------------------DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 732 ~~gsS~GV~~v~~~~-------------------eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.|..+.||.++.-.. +++++...+.... ....+|||+.|+-
T Consensus 64 ~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------------~~~~yIiQq~I~l 123 (262)
T PF14398_consen 64 NGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL--------------------GKRRYIIQQGIPL 123 (262)
T ss_pred CCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc--------------------CCCcEEEeCCccc
Confidence 999999998764332 2222222222211 1568999999974
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCce-EEEecCCccccccccccCCCceeEcCCC-C-C--
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPP-A-S-- 867 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~-~~i~~~~~~~d~~~Ky~~g~~~~~~P~~-~-~-- 867 (953)
. ..+|.. .++.|-+--+..+.+.+.+. .++-..+.+-+ ....|.. ..|.. . .
T Consensus 124 ~----------------~~~gr~--fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivT---N~~~GG~--~~~~~~~l~~~ 180 (262)
T PF14398_consen 124 A----------------TYDGRP--FDFRVLVQKNGSGKWQVTGIVARVAKPGSIVT---NLSQGGT--ALPFEEVLRQS 180 (262)
T ss_pred c----------------ccCCCe--EEEEEEEEECCCCCEEEEEEEEEEcCCCCcee---ccCCCce--ecCHHHHHHhh
Confidence 3 112210 25666665544333333322 23333333322 2222221 11110 0 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC----C-cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 868 IMSTEALDKCKQRIELIANALQ----L-EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg----~-~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
.-...+.++|.+.|..++++|. . -|=..+|+-+|. +|++|+||||+.|+-....
T Consensus 181 ~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~-~g~iWliEvN~kP~~~~~~ 239 (262)
T PF14398_consen 181 EEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDK-NGKIWLIEVNSKPGKFDFR 239 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcC-CCCEEEEEEeCCCCcchhh
Confidence 0124567778888888886664 3 345689999995 7999999999999966543
|
|
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-06 Score=92.68 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=115.1
Q ss_pred HHHcCCccEECCCHHHHHHhccHHHHHHHHHHCC-CC--CCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCC
Q 002207 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQG-FI--TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260 (953)
Q Consensus 184 lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G-ip--tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~g 260 (953)
+-+..|+||.++. ..||+.+.+.|.... +. .|++..+.+.+ .+..++.+ ..-|++||..|+
T Consensus 3 ~k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~----~l~~~L~~------y~~vylKP~~Gs 66 (262)
T PF14398_consen 3 LKKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETELLTSFE----DLREMLNK------YKSVYLKPDNGS 66 (262)
T ss_pred hHhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCceEcCCHH----HHHHHHHH------CCEEEEEeCCCC
Confidence 4467899999863 479999999999864 22 46666665533 24444432 125999999999
Q ss_pred CceeEEEeC----------------------CHHHHHHHHHHhHhcCCCCcEEEeccCC----CCeEEEEEEEEeCCCCc
Q 002207 261 SSIGVTVAY----------------------GVIDSLKKAKGIILEGIDDRVVVELFLE----GGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 261 sS~GV~~v~----------------------~~~el~~~a~~~~~~~~~~~vlVEefI~----Gg~E~tv~Vl~~~~g~~ 314 (953)
.|.||.++. +.+++.......+ ....+|||+.|+ +|+-|.+-|+-..++ .
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~-~ 142 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL---GKRRYIIQQGIPLATYDGRPFDFRVLVQKNG-S 142 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc---CCCcEEEeCCccccccCCCeEEEEEEEEECC-C
Confidence 999997753 2345554444432 345899999994 126544444432222 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-----CCCHHHHHHHHHHHHHHHHHhC----C-C
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-----RFPIVVINSIREGASLLFQRLG----L-C 384 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-----~l~~~~~~~i~~~a~~~~~aLg----~-~ 384 (953)
+.-.+.... +.+.. .+ .+...+..|+. ...... .-...+.++|.+.|..++++|. . -
T Consensus 143 G~W~vtg~~-~Rva~--------~~---~ivTN~~~GG~-~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~ 209 (262)
T PF14398_consen 143 GKWQVTGIV-ARVAK--------PG---SIVTNLSQGGT-ALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHL 209 (262)
T ss_pred CCEEEEEEE-EEEcC--------CC---CceeccCCCce-ecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 222221111 11111 11 12233333331 111100 1134467778888888887764 3 3
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~ 427 (953)
|-..+|+-+ |.+|++|++|||+.|+-
T Consensus 210 gElGiDl~i-----------------D~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 210 GELGIDLGI-----------------DKNGKIWLIEVNSKPGK 235 (262)
T ss_pred eEEEEEEEE-----------------cCCCCEEEEEEeCCCCc
Confidence 567899876 78999999999999993
|
|
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-06 Score=85.33 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=71.5
Q ss_pred ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-ccHHHHHHHHHHHHhhCCCCCcccccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHG 772 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~~~~~~~ 772 (953)
+|++.+.++. +.+.++.++.+ . +|+||..+.++.||.++... .++.. .++.....
T Consensus 12 ~P~T~vs~~~--------~~i~~f~~~~~-~-~VlKPl~g~gG~gV~~i~~~~~n~~~---i~e~~~~~----------- 67 (173)
T PF02955_consen 12 IPPTLVSRDK--------EEIRAFIEEHG-D-IVLKPLDGMGGRGVFRISRDDPNLNS---ILETLTKN----------- 67 (173)
T ss_dssp S--EEEES-H--------HHHHHHHHHHS-S-EEEEESS--TTTT-EEE-TT-TTHHH---HHHHHTTT-----------
T ss_pred CcCEEEECCH--------HHHHHHHHHCC-C-EEEEECCCCCCcCEEEEcCCCCCHHH---HHHHHHhc-----------
Confidence 4666555432 23455666664 4 99999999999999999874 33442 22222211
Q ss_pred cccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceE-EEecCCccccccc
Q 002207 773 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEE 851 (953)
Q Consensus 773 ~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~-~i~~~~~~~d~~~ 851 (953)
....+|+|+|++.- -+| |.++-++... ..+.+ ++...+ ||..
T Consensus 68 -------~~~~~mvQ~flp~i-----------------~~G-----DkRii~~nG~-----~~~av~R~P~~g---d~R~ 110 (173)
T PF02955_consen 68 -------GERPVMVQPFLPEI-----------------KEG-----DKRIILFNGE-----PSHAVRRIPAKG---DFRS 110 (173)
T ss_dssp -------TTS-EEEEE--GGG-----------------GG------EEEEEEETTE-----E-SEEEEE--SS----S--
T ss_pred -------CCccEEEEeccccc-----------------cCC-----CEEEEEECCE-----EhHHeecCCCCC---Ccee
Confidence 14679999999852 245 8888887643 22233 444334 3344
Q ss_pred cccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcc--eEEEEEEEEcCCCcEEEEeeCC
Q 002207 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEG--FSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 852 Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G--~ariDf~v~~~~g~~~viEINt 914 (953)
....|...... . ++++ -++.|+++...|.-+| |++||++ . + |+.|||.
T Consensus 111 N~~~Gg~~~~~--~---lt~~----e~~i~~~i~~~L~~~Gl~f~GiDvi-g---~--~l~EiNv 160 (173)
T PF02955_consen 111 NLAAGGSAEPA--E---LTER----EREICEQIGPKLREDGLLFVGIDVI-G---D--KLTEINV 160 (173)
T ss_dssp -GGGTSCEEEE--E-----HH----HHHHHHHHHHHHHHTT--EEEEEEE-T---T--EEEEEE-
T ss_pred eeccCCceeec--C---CCHH----HHHHHHHHHHHHhhcCcEEEEEecc-c---c--ceEEEec
Confidence 33334333322 2 2333 3445555555554443 7999963 2 2 8999995
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=85.03 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCC
Q 002207 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299 (953)
Q Consensus 220 tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg 299 (953)
+|++++..+.+ .+.++++.. +. +||||..+.+|.||.++...+.-.+...+.+.......+|+|+|++.-
T Consensus 12 ~P~T~vs~~~~----~i~~f~~~~-----~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i 81 (173)
T PF02955_consen 12 IPPTLVSRDKE----EIRAFIEEH-----GD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI 81 (173)
T ss_dssp S--EEEES-HH----HHHHHHHHH-----SS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG
T ss_pred CcCEEEECCHH----HHHHHHHHC-----CC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc
Confidence 46666655432 355555432 22 999999999999999987643222333333333345679999999521
Q ss_pred --eEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHH
Q 002207 300 --SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377 (953)
Q Consensus 300 --~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~ 377 (953)
-|.++.+++ | .++- . +.-.+ .--||++....|+... +..++++. +++|.++
T Consensus 82 ~~GDkRii~~n---G---~~~~--a--v~R~P----------~~gd~R~N~~~Gg~~~---~~~lt~~e----~~i~~~i 134 (173)
T PF02955_consen 82 KEGDKRIILFN---G---EPSH--A--VRRIP----------AKGDFRSNLAAGGSAE---PAELTERE----REICEQI 134 (173)
T ss_dssp GG-EEEEEEET---T---EE-S--E--EEEE------------SS-S---GGGTSCEE---EEE--HHH----HHHHHHH
T ss_pred cCCCEEEEEEC---C---EEhH--H--eecCC----------CCCCceeeeccCCcee---ecCCCHHH----HHHHHHH
Confidence 278888883 2 2221 1 11111 1235666666665332 23455555 4555555
Q ss_pred HHHhCCCC--eeEeeee
Q 002207 378 FQRLGLCD--FARIDGW 392 (953)
Q Consensus 378 ~~aLg~~G--~arVDf~ 392 (953)
...|.-+| |++||++
T Consensus 135 ~~~L~~~Gl~f~GiDvi 151 (173)
T PF02955_consen 135 GPKLREDGLLFVGIDVI 151 (173)
T ss_dssp HHHHHHTT--EEEEEEE
T ss_pred HHHHhhcCcEEEEEecc
Confidence 55553333 9999975
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00031 Score=81.35 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC--CCCc--ceEEeCCcccHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD--GCST--GVARLCCAEDLTVY 751 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~--gsS~--GV~~v~~~~eL~~~ 751 (953)
+++.+|++ |+++|||+|++.++.+.+ .+.++.+++++||++|||... |.|. ||.++.+.+++.+
T Consensus 4 ~e~~ak~l---L~~~gIpvp~~~~~~~~~--------ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~- 71 (388)
T PRK00696 4 HEYQAKEL---FAKYGVPVPRGIVATTPE--------EAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEARE- 71 (388)
T ss_pred CHHHHHHH---HHHcCCCCCCCeeeCCHH--------HHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHH-
Confidence 67889998 999999999999887643 233455667349999999743 2333 9999887777765
Q ss_pred HHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 752 VKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+.++.+.. .+ .+..+ .+......++||+++++. +|+.+++..+.
T Consensus 72 --a~~~i~~~----~~~~~~~~---~~g~~~~gvlVe~~~~~~------------------------~E~~vg~~~D~ 116 (388)
T PRK00696 72 --FAKQILGM----TLVTHQTG---PKGQPVNKVLVEEGADIA------------------------KEYYLSIVLDR 116 (388)
T ss_pred --HHHHhhcc----ceeeeccC---CCCCEEeEEEEEeccCCC------------------------ceEEEEEEEcC
Confidence 44443321 00 00000 000113469999999843 49999999875
|
|
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00035 Score=75.16 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=110.4
Q ss_pred HHHhcChHHHHHHHHHHHHCC--CCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccH
Q 002207 671 SKTCMDKVATSLALNHLADLG--VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748 (953)
Q Consensus 671 s~l~~DK~~tk~~~~~l~~~G--Iptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL 748 (953)
...|.||+..++. +++.+ ...||...+.+.. .+ ++ ...| ..++|+||+.++++.+|....+.-+.
T Consensus 15 ~~~~~DK~~VR~y---v~~~~g~~~l~pll~v~~~~------~~-i~--~~~L-p~~fViK~nhgsg~~~i~~dk~~~d~ 81 (239)
T PF14305_consen 15 FTKLADKYAVREY---VEEKIGEEYLPPLLGVYDNP------DD-ID--FDSL-PDKFVIKPNHGSGSNIIVRDKSKLDI 81 (239)
T ss_pred ceecchHHHHHHH---HHHhCCCceECceeecCCCh------hh-hh--hhcC-CCCEEEEEecCCCcEEEEeCCcccCH
Confidence 3568899999998 66664 2345544433221 01 10 2356 57899999999999888887776666
Q ss_pred HHHHHHHHHHHhhCCCCCcccccccccCC-CCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcC
Q 002207 749 TVYVKALEECLLRIPPNSFSRAHGMIEMP-NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK 827 (953)
Q Consensus 749 ~~~~~al~~a~~~~~~~~~~~~~~~~~~p-~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~ 827 (953)
....+-+...++. +.... -.|.. ..-.+.+|||++++... | ..-.++-+-++..
T Consensus 82 ~~~~~~~~~wl~~---~~~~~---~~E~~Y~~i~prIivE~~l~~~~------------------~-~~~~DYKf~cF~G 136 (239)
T PF14305_consen 82 EEAKKKLNRWLKK---DYYYQ---SREWHYKNIKPRIIVEELLEDED------------------G-KIPRDYKFFCFNG 136 (239)
T ss_pred HHHHHHHHHHhhh---ccccc---cccccCcCCCceEEEEeccccCC------------------C-CCcceEEEEEECC
Confidence 6544444443332 11000 01110 11257899999997641 0 0013666666653
Q ss_pred CCCceeeCceEEEe----cCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC
Q 002207 828 CGSMHSLMPSVTVK----ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD 903 (953)
Q Consensus 828 ~~~~~~~~p~~~i~----~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~ 903 (953)
. ...+. +... ....+||.+=+...-. .-.|.....--++..+++.++|+++.+-+. +.||||...
T Consensus 137 ~--~~~i~--v~~~r~~~~~~~~yd~dw~~l~~~--~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~-- 205 (239)
T PF14305_consen 137 K--PKFIQ--VDSDRFGNHKRNFYDRDWNRLPFR--SDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNV-- 205 (239)
T ss_pred E--EEEEE--EEeCCCCCeEEEEECcccCCCccc--cCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEe--
Confidence 2 11110 0100 0122444331111110 001111111235667888888888776643 899999887
Q ss_pred CCcEEEEeeCCCCCCCCC
Q 002207 904 NGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 904 ~g~~~viEINt~PGlt~~ 921 (953)
+|++||-|+-..||-.-.
T Consensus 206 ~~~iyFGElTf~p~~G~~ 223 (239)
T PF14305_consen 206 DGKIYFGELTFTPGAGFE 223 (239)
T ss_pred CCcEEEEeeecCCCCcCC
Confidence 589999999988876543
|
|
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=76.97 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCC----ceeEEEeCCHHHHHHHHHHh
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS----SIGVTVAYGVIDSLKKAKGI 281 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs----S~GV~~v~~~~el~~~a~~~ 281 (953)
-+..|++|+++|||+|++.++.+.++.. .....++ ..++||||---.+ +=||.++++.+|+.+.+.++
T Consensus 4 EyqaK~ll~~~gi~vp~g~~a~s~eea~----~~~~~l~----~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~m 75 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVVATSPEEAR----EAAKELG----GKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEM 75 (202)
T ss_dssp HHHHHHHHHCTT----SEEEESSHHHHH----HHHHHHT----TSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHH----HHHHHhC----CCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHH
Confidence 4778999999999999999998765432 2222221 2368999954333 34789999999999999887
Q ss_pred HhcCC-----------CCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 282 ILEGI-----------DDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 282 ~~~~~-----------~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.... -..+|||++++=.+|+-++++-|..
T Consensus 76 lg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 76 LGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE 116 (202)
T ss_dssp TTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred hCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence 65211 2478999999766999999986643
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00071 Score=78.12 Aligned_cols=97 Identities=18% Similarity=0.053 Sum_probs=71.5
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-cEEEeeCCC----CCceeEEEeCCHHHHHHHHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRA----GSSIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~~~----gsS~GV~~v~~~~el~~~a~~ 280 (953)
-+..|++|+++|||+|++.++.+.++. .+..+ ++++ |++||.... |-+-||.++.+.+|+.+.+.+
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea----~~~a~-----~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ 75 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQA----VYRAR-----ELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAED 75 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHH----HHHHH-----HcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 467899999999999999988765532 22222 2567 579997321 234588888899999888887
Q ss_pred hHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 281 IILEG-----------IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++... .-..++||+++.+++|+-+++..|..
T Consensus 76 ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~ 117 (392)
T PRK14046 76 LLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRK 117 (392)
T ss_pred HhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCC
Confidence 76531 12469999999977999999998643
|
|
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=79.34 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
+.-+.++||++|. +++||+||||..|.+...+
T Consensus 235 ~Fel~G~DfmlD~-~~kpwLLEvN~~Psl~~~~ 266 (292)
T PF03133_consen 235 CFELFGFDFMLDE-DLKPWLLEVNSNPSLSTST 266 (292)
T ss_dssp E-EEEEEEEEEBT-TS-EEEEEEESS------T
T ss_pred ccceeeeEEEecC-CCeEEEeeCCCCCCcccCC
Confidence 3457899999985 7999999999999998765
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.001 Score=71.58 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=106.1
Q ss_pred HHHhccHHHHHHHHHHCC--CCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCC---HHHH
Q 002207 200 CRQAFDKYDASLEMSKQG--FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDS 274 (953)
Q Consensus 200 ~~i~~DK~~~k~~l~~~G--iptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~---~~el 274 (953)
...+.||+..+.++++.+ ...||.+.+.+... + +..+.+..++|+||++++++.+|....+ ..++
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~---~-------i~~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~ 84 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPD---D-------IDFDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEA 84 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCChh---h-------hhhhcCCCCEEEEEecCCCcEEEEeCCcccCHHHH
Confidence 456789999999999986 33344444433211 1 1123456689999999999998877653 3333
Q ss_pred HHHHHHhHhc------------CCCCcEEEeccCC--CC---eEEEEEEEEeCCCCccccEEecceEEEEeccCcccccc
Q 002207 275 LKKAKGIILE------------GIDDRVVVELFLE--GG---SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE 337 (953)
Q Consensus 275 ~~~a~~~~~~------------~~~~~vlVEefI~--Gg---~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~ 337 (953)
...+.+.+.. ...+++|||++|. ++ .+|-+-+++ +.+..+. +..... ...
T Consensus 85 ~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~------G~~~~i~-----v~~~r~--~~~ 151 (239)
T PF14305_consen 85 KKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN------GKPKFIQ-----VDSDRF--GNH 151 (239)
T ss_pred HHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC------CEEEEEE-----EEeCCC--CCe
Confidence 3333332221 1347999999994 22 478888773 2333211 111100 000
Q ss_pred CCcccccccCccCCCceEE-EcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcE
Q 002207 338 KDAIFNYRRKYLPTQQVAY-HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416 (953)
Q Consensus 338 ~~~~~dy~~Ky~~~~~~~~-~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~ 416 (953)
...+||.+-+..+-. ..+ ..+..--++..+++.++|+++.+-+ .+.||||.. .+|++
T Consensus 152 ~~~~yd~dw~~l~~~-~~~~~~~~~~kP~~l~emi~iA~~Ls~~f---~fvRVDlY~------------------~~~~i 209 (239)
T PF14305_consen 152 KRNFYDRDWNRLPFR-SDYPPDEDIPKPKNLEEMIEIAEKLSKGF---PFVRVDLYN------------------VDGKI 209 (239)
T ss_pred EEEEECcccCCCccc-cCCCCCCCCCCChhHHHHHHHHHHHccCC---CEEEEEEEE------------------eCCcE
Confidence 223555443322210 011 0111122344466667776665553 599999853 46789
Q ss_pred EEEeecCCCCCCCcchHHH
Q 002207 417 LFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 417 ~~lEIN~~PG~t~~S~~p~ 435 (953)
||=|+=..||-....++|.
T Consensus 210 yFGElTf~p~~G~~~~~p~ 228 (239)
T PF14305_consen 210 YFGELTFTPGAGFEPFFPP 228 (239)
T ss_pred EEEeeecCCCCcCCCCCCH
Confidence 9999998887443344444
|
|
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0017 Score=72.53 Aligned_cols=97 Identities=23% Similarity=0.222 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeCCC--CC--ceeEEEeCCHHHHHHHHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPTRA--GS--SIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~~--gs--S~GV~~v~~~~el~~~a~~ 280 (953)
-|..|++|+++|||+|+.++..+.++ +.++.++ ++ .|+|||+--- |- +=||.++.|.+|+.+.+.+
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~s~ee----a~~~a~~-----lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~ 75 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVATSPEE----AEEAAKE-----LGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEE 75 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeeeCHHH----HHHHHHH-----hCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHH
Confidence 47889999999999999999887653 3333333 33 5999999542 22 3389999999999999998
Q ss_pred hHh----cC----CCCcEEEeccCC-CCeEEEEEEEEeCC
Q 002207 281 IIL----EG----IDDRVVVELFLE-GGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~----~~----~~~~vlVEefI~-Gg~E~tv~Vl~~~~ 311 (953)
++. .. .-..+|||++++ -.+||-++++-|..
T Consensus 76 ~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~ 115 (387)
T COG0045 76 ILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRS 115 (387)
T ss_pred HhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcC
Confidence 875 11 235899999997 42499999886643
|
|
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00056 Score=76.05 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=23.2
Q ss_pred cEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 251 PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
-+|+||..+..|.||.++++.+++.+.. ......++||+||+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~~-----~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRFS-----KNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCCH-----CCTTS-EEEEE--S
T ss_pred EEEEeccccCCCCCceecCCHHHHHHHh-----hhhhhhhhhhhccC
Confidence 4999999999999999999988866431 12457899999995
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0021 Score=74.54 Aligned_cols=100 Identities=18% Similarity=0.088 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCC--CCCc---------eeEEEeCCHH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR--AGSS---------IGVTVAYGVI 272 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~--~gsS---------~GV~~v~~~~ 272 (953)
..-+..|++|+++|||+|++.++.+.++. .+..+.++ ..++|+|||+.- ||-+ -||.++++ +
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~va~t~eea----~~aa~~l~--~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-e 102 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGAAASSLDEV----KKALEKMF--PDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-D 102 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHH----HHHHHHhc--ccCCcEEEEEEeccCCccccccccccCCeEEECCH-H
Confidence 35778899999999999999988775432 22222221 126799999983 4333 34667766 8
Q ss_pred HHHHHHHHhHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 273 DSLKKAKGIILEG-----------IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 273 el~~~a~~~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
|+.+.+.+++... .-+.++|||.+..++|+-+++..|.
T Consensus 103 ea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 103 KAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 8888887776431 1135786666654599999999764
|
|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=70.79 Aligned_cols=211 Identities=17% Similarity=0.204 Sum_probs=129.2
Q ss_pred CCcEEEEecCCC-CCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCC---CCccCeEEEeCcccc
Q 002207 634 NQATVFIAVHGG-IGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG---VLTINKDVRRKEDLL 706 (953)
Q Consensus 634 ~~dvvf~~~hG~-~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~G---Iptp~~~~v~~~~~~ 706 (953)
++|+||+--|-. ..+++ +|---|...|||.+.+=.-+...|--.+.++++.++....| +|..+.......
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH--- 231 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH--- 231 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCc---
Confidence 479999998884 44333 55566788999998776555555644455666655566777 454443332221
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 707 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 707 ~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
+.....- .||+|||=..+.++.|=-+|+|.+|+.+....++-. ...+-+
T Consensus 232 --------K~m~s~~-tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~----------------------~Tyat~ 280 (488)
T KOG3895|consen 232 --------KEMLSQP-TYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT----------------------KTYATA 280 (488)
T ss_pred --------hhhccCC-CCcEEEEecccccccceeeecchhhhHhHHHHHHHH----------------------hhhhhc
Confidence 1112222 699999999999999999999999998754444333 244678
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCC
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~ 866 (953)
|+||+.. .++.+.-+|.+-..+ ++..-.+.| |-+.|+. .. .+
T Consensus 281 epFiDaK------------------------YDiriQKIG~nYKay-----mRtsIsgnW-----KtNtGSa--mL-EQ- 322 (488)
T KOG3895|consen 281 EPFIDAK------------------------YDIRIQKIGHNYKAY-----MRTSISGNW-----KTNTGSA--ML-EQ- 322 (488)
T ss_pred ccccccc------------------------ceeehhhhhhhHHHH-----hhhhhccCc-----ccCchHH--HH-HH-
Confidence 9999975 355555566542211 000001111 1111211 00 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCCC
Q 002207 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 921 (953)
Q Consensus 867 ~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~~ 921 (953)
-...++-+.....+-+.+|.-.++-||.... ++|+=|++|||- +|-+..+
T Consensus 323 ----IamseRyklwvdtcse~fGgldICav~alhs-KdGrd~i~eV~d~smpliGeh 374 (488)
T KOG3895|consen 323 ----IAMSERYKLWVDTCSEMFGGLDICAVKALHS-KDGRDYIIEVMDSSMPLIGEH 374 (488)
T ss_pred ----HHHHHHHHHHHHHHHHhcCCcceEEeeeeec-ccchhheeeeccccccccccc
Confidence 0123445556666677888888999998877 479999999995 6655554
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0049 Score=62.76 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=95.9
Q ss_pred hHHHHHhcChHHHH-HHHHHHHHC---CCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeC
Q 002207 668 VMASKTCMDKVATS-LALNHLADL---GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743 (953)
Q Consensus 668 ~~as~l~~DK~~tk-~~~~~l~~~---GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~ 743 (953)
..+...+.||-+.. ++++..++. .+|-.+.....+... .... ..||+|||--...++.|=.+|+
T Consensus 3 L~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~e-----------m~s~-~~fPvVvKvG~~h~G~GKvkv~ 70 (203)
T PF02750_consen 3 LHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHRE-----------MLSA-PRFPVVVKVGHAHAGMGKVKVD 70 (203)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGG-----------GCS--SSSSEEEEESS-STTTTEEEE-
T ss_pred ccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhh-----------hccC-CCCCEEEEEccccCceeEEEEc
Confidence 45666778887653 333333444 455544444433211 1112 2689999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEE
Q 002207 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 823 (953)
Q Consensus 744 ~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~ 823 (953)
|..++.++...+... ...+-+|+||+.. .++.|.
T Consensus 71 n~~~~qDi~sll~~~----------------------~~Y~T~EPfId~k------------------------yDirvq 104 (203)
T PF02750_consen 71 NQQDFQDIASLLAIT----------------------KDYATTEPFIDAK------------------------YDIRVQ 104 (203)
T ss_dssp SHHHHHHHHHHHHHH----------------------TS-EEEEE---EE------------------------EEEEEE
T ss_pred cHHHHHHHHHHHHhc----------------------CceEEeeccccce------------------------eEEEEE
Confidence 999998754444422 4668999999865 478887
Q ss_pred EEcCCCCceeeCceEEEecCCccccccccccCCCcee-EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc
Q 002207 824 VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 902 (953)
Q Consensus 824 vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~-~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~ 902 (953)
-+|++- .+. ++-.-++.+ |-+.|+... -+| ..++.+..+..+.+.+|.-.++.||++...
T Consensus 105 kIG~~y--kA~---~R~sis~nW-----K~N~gsa~lEqi~---------~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k 165 (203)
T PF02750_consen 105 KIGNNY--KAY---MRTSISGNW-----KANTGSAMLEQIA---------MTERYKLWVDECSELFGGLDICAVDAIHGK 165 (203)
T ss_dssp EETTEE--EEE---EEEESSSTS-----STTSSSEEEEEE------------HHHHHHHHHHGGGGG--SEEEEEEEEET
T ss_pred EEcCeE--EEE---EEccccccc-----cccccchheeecC---------CChHHHHHHHHHHHHcCCccEEEEEEEEcC
Confidence 787652 111 121112221 223333221 122 235677788888888977779999998885
Q ss_pred CCCcEEEEeeCC
Q 002207 903 DNGEVLIIEVNT 914 (953)
Q Consensus 903 ~~g~~~viEINt 914 (953)
+|+-|++|+|-
T Consensus 166 -dGke~Iievnd 176 (203)
T PF02750_consen 166 -DGKEYIIEVND 176 (203)
T ss_dssp -TS-EEEEEEE-
T ss_pred -CCCEEEEEecC
Confidence 89999999994
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.028 Score=61.16 Aligned_cols=210 Identities=17% Similarity=0.110 Sum_probs=124.2
Q ss_pred ecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhh
Q 002207 641 AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK 720 (953)
Q Consensus 641 ~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~ 720 (953)
+=||.+-.--.+.++.+.+-+|+.|+-.+ ...-.|...-..+ |+++||+.|..+ .+. +.
T Consensus 90 IP~gSfv~Y~G~d~ie~~~~vP~fGnR~l-LrwE~~~~~~~~l---LekAgi~~P~~~--~~P---------------ee 148 (361)
T COG1759 90 IPHGSFVAYVGYDGIENEFEVPMFGNREL-LRWEEDRKLEYKL---LEKAGLRIPKKY--KSP---------------EE 148 (361)
T ss_pred ecCCceEEEecchhhhhcccCcccccHhH-hhhhcchhhHHHH---HHHcCCCCCccc--CCh---------------HH
Confidence 44777666555667778899999998755 4444476666666 899999999854 211 12
Q ss_pred cCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccc
Q 002207 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800 (953)
Q Consensus 721 lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~ 800 (953)
+ .-|++||+...-+++|-+.+.+.+|+.+ .++...+. ++|.. ..-..+.|||||-|..+..
T Consensus 149 I-dr~VIVK~pgAkggRGyFiA~s~eef~e---k~e~l~~~----------gvi~~--edlkna~IeEYv~G~~f~~--- 209 (361)
T COG1759 149 I-DRPVIVKLPGAKGGRGYFIASSPEEFYE---KAERLLKR----------GVITE--EDLKNARIEEYVVGAPFYF--- 209 (361)
T ss_pred c-CCceEEecCCccCCceEEEEcCHHHHHH---HHHHHHHc----------CCcch--hhhhhceeeEEeeccceee---
Confidence 3 4699999999888999999999999886 33333321 11100 0125689999999974433
Q ss_pred cccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec-CCccccccccccCC----Cce---eEcCCCCCCCCHH
Q 002207 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQGG----TGI---NLTPPPASIMSTE 872 (953)
Q Consensus 801 ~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~-~~~~~d~~~Ky~~g----~~~---~~~P~~~~~l~~~ 872 (953)
.+--+.+.+. ...+.-..++.. -.+++...++.+-. .+- -..|.. +-+.
T Consensus 210 ------------------~yFyS~i~~~--lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v---lRES 266 (361)
T COG1759 210 ------------------HYFYSPIKDR--LELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV---LRES 266 (361)
T ss_pred ------------------eeeeccccCc--eeEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcchh---hHHH
Confidence 1111111111 000000011111 12233333333210 000 012332 4566
Q ss_pred HHHHHHHHHHHHHHHc------CCcceEEEEEEEEcCCCcEEEEeeCC
Q 002207 873 ALDKCKQRIELIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aL------g~~G~ariDf~v~~~~g~~~viEINt 914 (953)
++.++-+++.+..++- |+-|..-.+..+++ +=++|+.|+-+
T Consensus 267 LL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~ 313 (361)
T COG1759 267 LLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSA 313 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEec
Confidence 7777777777666543 56788889999985 67899999975
|
|
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.016 Score=67.14 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EEEecCC----CCCCcceEEeCCcccHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LCVKPAR----DGCSTGVARLCCAEDLTVY 751 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~P-lvVKP~~----~gsS~GV~~v~~~~eL~~~ 751 (953)
-+..|++ |+++|||+|++.++.+.+ .+.+..+++ ++| ++||.-. -+-+-||....+.+++.+
T Consensus 5 E~eak~l---L~~yGIpvp~~~~~~~~~--------ea~~~a~~l-g~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~- 71 (392)
T PRK14046 5 EYQAKEL---LASFGVAVPRGALAYSPE--------QAVYRAREL-GGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRD- 71 (392)
T ss_pred HHHHHHH---HHHcCCCCCCceEECCHH--------HHHHHHHHc-CCCcEEEEeeeccCCCCcCCeEEEECCHHHHHH-
Confidence 3566777 999999999999887643 234556778 584 6999732 233457888877777665
Q ss_pred HHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 752 VKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+.++.+.. .+ .+.++ .+...-..++||+++++. +|+-+++..+.
T Consensus 72 --a~~~ll~~----~~~~~~~~---~~g~~v~~vlVe~~~~~~------------------------~E~ylgi~~D~ 116 (392)
T PRK14046 72 --AAEDLLGK----KLVTHQTG---PEGKPVQRVYVETADPIE------------------------RELYLGFVLDR 116 (392)
T ss_pred --HHHHHhcc----hhhhhccC---CCCCeeeeEEEEEecCCC------------------------cEEEEEEEECC
Confidence 34433321 00 00000 000124679999999864 49999998775
|
|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0078 Score=65.60 Aligned_cols=200 Identities=15% Similarity=0.086 Sum_probs=117.7
Q ss_pred cCcCEEEEcCCCC-C--CCc-hHHHHHHHcCCccEECCCHHHHHHhccHHH-HHH---HHHHCC---CCCCCeEEecCCc
Q 002207 162 ANVDIVFPTIHGR-F--GED-GGIQEVLEKYNVPFVGTGSRACRQAFDKYD-ASL---EMSKQG---FITVPSFLLQGSE 230 (953)
Q Consensus 162 ~~~D~vf~~lhG~-~--GEd-g~iq~lle~~gIpyvGs~~~a~~i~~DK~~-~k~---~l~~~G---iptp~~~~~~~~~ 230 (953)
.++|+||..-|.. . +|| ..+---|...|||++.+-..+.. ..||.. +++ +....| ||..+.....+..
T Consensus 154 fkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~Svyn-Fcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK 232 (488)
T KOG3895|consen 154 FKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYN-FCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHK 232 (488)
T ss_pred ccCCEEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHH-hccchHHHHHHHHHHHhcCccccccceeeecCCch
Confidence 3799999998753 2 233 24556678899999965444344 445544 433 344555 5554443333321
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
. . +....||+|||=..+-+++|=.+|+|-+|+.+.+.-. + -.+..+-+|.||+...++.+.-++
T Consensus 233 ~---m---------~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svv-a-l~~Tyat~epFiDaKYDiriQKIG-- 296 (488)
T KOG3895|consen 233 E---M---------LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVV-A-LTKTYATAEPFIDAKYDIRIQKIG-- 296 (488)
T ss_pred h---h---------ccCCCCcEEEEecccccccceeeecchhhhHhHHHHH-H-HHhhhhhccccccccceeehhhhh--
Confidence 1 0 1235699999999999999999999988865443321 1 024567799999864556665553
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCC-HHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP-IVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~-~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
.+ ..+..-+- ....|..+.++ +-|. -...++-+-....+-..+|--++|-|
T Consensus 297 --~n--YKaymRts-------------------IsgnWKtNtGS-----amLEQIamseRyklwvdtcse~fGgldICav 348 (488)
T KOG3895|consen 297 --HN--YKAYMRTS-------------------ISGNWKTNTGS-----AMLEQIAMSERYKLWVDTCSEMFGGLDICAV 348 (488)
T ss_pred --hh--HHHHhhhh-------------------hccCcccCchH-----HHHHHHHHHHHHHHHHHHHHHhcCCcceEEe
Confidence 11 11111110 11223222111 0011 11234445556666677888889999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
|... .+||+=|++|||-
T Consensus 349 ~alh-----------------sKdGrd~i~eV~d 365 (488)
T KOG3895|consen 349 KALH-----------------SKDGRDYIIEVMD 365 (488)
T ss_pred eeee-----------------cccchhheeeecc
Confidence 9764 6899999999994
|
|
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.03 Score=64.40 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHC-----CCCCCCeEEe-cCCccchhhhhhhhhhcCCCCCCC-cEEEeeCCCCCc----eeEEEeCCHHH
Q 002207 205 DKYDASLEMSKQ-----GFITVPSFLL-QGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSS----IGVTVAYGVID 273 (953)
Q Consensus 205 DK~~~k~~l~~~-----Giptp~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~~~gsS----~GV~~v~~~~e 273 (953)
.-+..|++|+++ |||+|...+. .+.++ +.+..++.. .+++ ++||||--..++ =||.++++.+|
T Consensus 7 ~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee----~~~~~~~~~--~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~E 80 (423)
T PLN02235 7 REYDSKRLLKEHLKRLAGIDLPIRSAQVTESTD----FNELANKEP--WLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
T ss_pred cHHHHHHHHHHhhcccCCCCCCCCeeccCCHHH----HHHHHHhhh--hhCCCcEEEEcccccCCCcccCceEEeCCHHH
Confidence 346788999998 9999999877 55432 222222210 1333 579999764443 46889999999
Q ss_pred HHHHHHHhHhcCC--------CCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 274 SLKKAKGIILEGI--------DDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 274 l~~~a~~~~~~~~--------~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.+.+.+++.... -..+|||++++=.+|+-++++-+..
T Consensus 81 a~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~ 126 (423)
T PLN02235 81 VATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRL 126 (423)
T ss_pred HHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecC
Confidence 9999988775321 2378999999655999999987643
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.006 Score=64.84 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-----CCcceEE-eCCcccHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-----CSTGVAR-LCCAEDLT 749 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g-----sS~GV~~-v~~~~eL~ 749 (953)
+-..++++ |+.+|||+|++..+.+.+ ...+..+++ +||+++|-.... ---||.. +.+.+++.
T Consensus 11 ~e~e~~~l---L~~yGI~~~~~~~~~~~~--------ea~~~a~~i-g~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~ 78 (222)
T PF13549_consen 11 TEAEAKEL---LAAYGIPVPPTRLVTSAE--------EAVAAAEEI-GFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVR 78 (222)
T ss_dssp -HHHHHHH---HHTTT------EEESSHH--------HHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHHHH
T ss_pred CHHHHHHH---HHHcCcCCCCeeEeCCHH--------HHHHHHHHh-CCCEEEEEecCCCCcCCCCCcEEECCCCHHHHH
Confidence 55677787 999999999999987643 234556788 699999997643 1236665 77888888
Q ss_pred HHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc-CcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 750 ~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+..+.+....... .|......++||+.+. +. .|+.+++..+.
T Consensus 79 ~a~~~l~~~~~~~-------------~p~~~~~gvlVq~m~~~~g------------------------~El~vG~~~Dp 121 (222)
T PF13549_consen 79 EAFERLRERVAAH-------------HPGARIDGVLVQEMAPSGG------------------------RELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHHH--------------TT----EEEEEE------------------------------EEEEEEEEEET
T ss_pred HHHHHHHHHHHHh-------------CCCCccceEEEEEcccCCc------------------------EEEEEEEEECC
Confidence 7666666655321 1222246899999998 32 49999998875
|
|
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.022 Score=63.89 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC----CCcceEEeCCcccHHHHHH
Q 002207 678 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG----CSTGVARLCCAEDLTVYVK 753 (953)
Q Consensus 678 ~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g----sS~GV~~v~~~~eL~~~~~ 753 (953)
+..|++ |+++|||+|+.++..+.+ .+.++..++|+.|++||+---. -+-||..+.+.+|..+
T Consensus 6 YqaKel---f~~~GiPvp~g~v~~s~e--------ea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~--- 71 (387)
T COG0045 6 YQAKEL---FAKYGIPVPPGYVATSPE--------EAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKE--- 71 (387)
T ss_pred HHHHHH---HHHcCCCCCCceeeeCHH--------HHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHH---
Confidence 566777 999999999999887643 3566777886689999995322 2348999998888765
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 754 al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.++.+.. + +..++-. -+...++||++++
T Consensus 72 ~a~~~lg~---~---~q~~~~G---~~v~~vlvee~~~ 100 (387)
T COG0045 72 AAEEILGK---N---YQTDIKG---EPVNKVLVEEAVD 100 (387)
T ss_pred HHHHHhCc---c---cccCcCC---ceeeEEEEEecCC
Confidence 33443321 0 0001000 1257899999998
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.053 Score=55.41 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=88.5
Q ss_pred CHHHHHHhccHHHHH-HH---HHH---CCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEe
Q 002207 196 GSRACRQAFDKYDAS-LE---MSK---QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA 268 (953)
Q Consensus 196 ~~~a~~i~~DK~~~k-~~---l~~---~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v 268 (953)
+..+.-...||-... ++ .++ ..+|..+.....+... . +....||+|||--..-+|.|=.+|
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~e-------m-----~s~~~fPvVvKvG~~h~G~GKvkv 69 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHRE-------M-----LSAPRFPVVVKVGHAHAGMGKVKV 69 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGG-------G-----CS-SSSSEEEEESS-STTTTEEEE
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhh-------h-----ccCCCCCEEEEEccccCceeEEEE
Confidence 345566677776533 22 223 3466655444443221 1 112578999999999999999999
Q ss_pred CCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCc
Q 002207 269 YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 348 (953)
Q Consensus 269 ~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky 348 (953)
+|..++.+.+.-+.. ...-+.+|+||+-..++.+.-++ ++ ..+..-+ + ....|
T Consensus 70 ~n~~~~qDi~sll~~--~~~Y~T~EPfId~kyDirvqkIG----~~--ykA~~R~-----s--------------is~nW 122 (203)
T PF02750_consen 70 DNQQDFQDIASLLAI--TKDYATTEPFIDAKYDIRVQKIG----NN--YKAYMRT-----S--------------ISGNW 122 (203)
T ss_dssp -SHHHHHHHHHHHHH--HTS-EEEEE---EEEEEEEEEET----TE--EEEEEEE-----E--------------SSSTS
T ss_pred ccHHHHHHHHHHHHh--cCceEEeeccccceeEEEEEEEc----Ce--EEEEEEc-----c--------------ccccc
Confidence 999876654433222 35678999999854667776663 32 2221110 0 01223
Q ss_pred cC--CCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 349 LP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 349 ~~--~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
.. +...-..+| + .++.+.....+.+.+|--+++.||.+. .+||+-|++|+|-
T Consensus 123 K~N~gsa~lEqi~--~----~~ryk~Wvd~~s~lfGGlDI~~v~ai~-----------------~kdGke~Iievnd 176 (203)
T PF02750_consen 123 KANTGSAMLEQIA--M----TERYKLWVDECSELFGGLDICAVDAIH-----------------GKDGKEYIIEVND 176 (203)
T ss_dssp STTSSSEEEEEE---------HHHHHHHHHHGGGGG--SEEEEEEEE-----------------ETTS-EEEEEEE-
T ss_pred cccccchheeecC--C----ChHHHHHHHHHHHHcCCccEEEEEEEE-----------------cCCCCEEEEEecC
Confidence 22 222222232 3 344566677777888777899999875 6899999999994
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.12 Score=60.19 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcC--CCcEEEecCCC--CCC---------cceEEe
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARD--GCS---------TGVARL 742 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg--~~PlvVKP~~~--gsS---------~GV~~v 742 (953)
.-+..|++ |+++|||+|++.++.+.+ .+.+..++++ ++|+|+|+.-. |-+ -||..+
T Consensus 31 ~EyqaK~L---L~~~GIpvp~~~va~t~e--------ea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~ 99 (422)
T PLN00124 31 HEYQGAEL---MSKYGVNVPKGAAASSLD--------EVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIV 99 (422)
T ss_pred CHHHHHHH---HHHcCCCCCCceeeCCHH--------HHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEEC
Confidence 46677887 999999999998887643 2334455664 48999999843 222 346566
Q ss_pred CCcccHHH
Q 002207 743 CCAEDLTV 750 (953)
Q Consensus 743 ~~~~eL~~ 750 (953)
++ +++.+
T Consensus 100 ~~-eea~~ 106 (422)
T PLN00124 100 KK-DKAEE 106 (422)
T ss_pred CH-HHHHH
Confidence 55 55554
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=62.88 Aligned_cols=99 Identities=17% Similarity=0.058 Sum_probs=54.7
Q ss_pred hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCC-----ceeEEE-eCCHHHHHH
Q 002207 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS-----SIGVTV-AYGVIDSLK 276 (953)
Q Consensus 203 ~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs-----S~GV~~-v~~~~el~~ 276 (953)
..+-..++.+|..+|||+|++..+.+.++.. ..++ .++||+++|-....- --||.. +++.+++.+
T Consensus 9 ~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~----~~a~-----~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~ 79 (222)
T PF13549_consen 9 WLTEAEAKELLAAYGIPVPPTRLVTSAEEAV----AAAE-----EIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVRE 79 (222)
T ss_dssp EE-HHHHHHHHHTTT------EEESSHHHHH----HHHH-----HH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHH
T ss_pred ccCHHHHHHHHHHcCcCCCCeeEeCCHHHHH----HHHH-----HhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHH
Confidence 3466788999999999999999988765322 2222 268899999976431 125555 677777665
Q ss_pred HHHHhHhc-------CCCCcEEEeccCC-CCeEEEEEEEEeC
Q 002207 277 KAKGIILE-------GIDDRVVVELFLE-GGSEFTAIVLDVG 310 (953)
Q Consensus 277 ~a~~~~~~-------~~~~~vlVEefI~-Gg~E~tv~Vl~~~ 310 (953)
+..++... .....++||+.+. +|.|+.+++..|.
T Consensus 80 a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 80 AFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEET
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECC
Confidence 55444321 1235799999998 5699999999864
|
|
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.17 Score=58.39 Aligned_cols=93 Identities=24% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHC-----CCCccCeEEE-eCccccCCchhhHHHHHHhh---cCCCcEEEecCCCCCC----cceEEeCC
Q 002207 678 VATSLALNHLADL-----GVLTINKDVR-RKEDLLKTPIVDIWHELTSK---LQCKTLCVKPARDGCS----TGVARLCC 744 (953)
Q Consensus 678 ~~tk~~~~~l~~~-----GIptp~~~~v-~~~~~~~~~~~~~~~~~~~~---lg~~PlvVKP~~~gsS----~GV~~v~~ 744 (953)
+..|++ |+++ |||+|...+. .+.+ .+.++.++ |+.-++||||--..++ -||.++++
T Consensus 9 yqaK~l---l~~~~~~~~gipvP~~~v~~~~~e--------e~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s 77 (423)
T PLN02235 9 YDSKRL---LKEHLKRLAGIDLPIRSAQVTEST--------DFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLD 77 (423)
T ss_pred HHHHHH---HHHhhcccCCCCCCCCeeccCCHH--------HHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCC
Confidence 455676 7887 9999999877 5432 23344444 6433579999754333 46888988
Q ss_pred cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 745 ~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
.+|..+ +.++.+... +-. ++ +...-..+|||++++-+
T Consensus 78 ~~Ea~~---~a~~~Lg~~----l~t-~g----~~G~v~~vLVEe~v~i~ 114 (423)
T PLN02235 78 LAQVAT---FVKERLGKE----VEM-GG----CKGPITTFIVEPFVPHD 114 (423)
T ss_pred HHHHHH---HHHHHhCCc----eEe-cC----CCccEeEEEEEecCCCc
Confidence 888775 334433210 000 00 00023679999999764
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.011 Score=55.84 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=64.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc---cccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES---LAQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 154 (953)
+||+|+..|.- |.++++++++.|++++.++-+++-....... +|- .+..+ ....+....
T Consensus 3 kkvLIanrGei---------a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~--------ad~-~~~~~~~~~~~~yl~~e 64 (110)
T PF00289_consen 3 KKVLIANRGEI---------AVRIIRALRELGIETVAVNSNPDTVSTHVDM--------ADE-AYFEPPGPSPESYLNIE 64 (110)
T ss_dssp SEEEESS-HHH---------HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHH--------SSE-EEEEESSSGGGTTTSHH
T ss_pred CEEEEECCCHH---------HHHHHHHHHHhCCcceeccCchhcccccccc--------ccc-ceecCcchhhhhhccHH
Confidence 58999886654 8899999999999999998766532111100 010 01111 011111222
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHH
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~ 200 (953)
.+.+. ....+|.+||.. |...|+..+...++..||.|+|+++.++
T Consensus 65 ~I~~ia~~~g~~~i~pGy-g~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 65 AIIDIARKEGADAIHPGY-GFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHHHHHHTTESEEESTS-STTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred HHhhHhhhhcCccccccc-chhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 22221 234799999884 6677999999999999999999998763
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.033 Score=58.38 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC----CcceEEeCCcccHHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC----STGVARLCCAEDLTVYV 752 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gs----S~GV~~v~~~~eL~~~~ 752 (953)
-+..|++ |+++|||+|++.++++.+ .+.++...++..++||||--..+ .-||.++++.++..++
T Consensus 4 EyqaK~l---l~~~gi~vp~g~~a~s~e--------ea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~- 71 (202)
T PF08442_consen 4 EYQAKEL---LRKYGIPVPRGVVATSPE--------EAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEA- 71 (202)
T ss_dssp HHHHHHH---HHCTT----SEEEESSHH--------HHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHH-
T ss_pred HHHHHHH---HHHcCCCCCCeeecCCHH--------HHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHH-
Confidence 3567777 999999999999987643 23445567755578999953322 3478899888876642
Q ss_pred HHHHHHHhhCCCCCcc-cccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 753 KALEECLLRIPPNSFS-RAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 753 ~al~~a~~~~~~~~~~-~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
.++.+.. .+. +..+.-.. .-..++|||+++-+ +|+=++++-++
T Consensus 72 --a~~mlg~----~l~T~Qtg~~G~---~v~~vlvee~v~~~------------------------~E~Ylsi~~DR 115 (202)
T PF08442_consen 72 --AKEMLGK----TLKTKQTGPKGE---KVNKVLVEEFVDIK------------------------REYYLSITLDR 115 (202)
T ss_dssp --HHTTTTS----EEE-TTSTTTEE---EE--EEEEE---CC------------------------EEEEEEEEEET
T ss_pred --HHHHhCC----ceEeeecCCCCC---EeeEEEEEecCccC------------------------ceEEEEEEecc
Confidence 2222211 000 00110000 13678999999865 58888877654
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.076 Score=61.10 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHH----------------cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCC
Q 002207 870 STEALDKCKQRIELIANA----------------LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~a----------------Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~ 933 (953)
++.+-.+|+.++.+.+.+ .-|.-+.|+|+++|+ +=+++++|||--|.+...+ +..+.
T Consensus 439 t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDe-dLkpwLlEVNISPSLhS~t--pld~~---- 511 (662)
T KOG2156|consen 439 TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDE-DLKPWLLEVNISPSLHSET--PLDCS---- 511 (662)
T ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecC-ccceeeEEEecccccccCC--Cccch----
Confidence 345667777777766622 124557899999995 6789999999988886542 22221
Q ss_pred CCCHHHHHHHHHHHHh
Q 002207 934 PMYPHQFFRKVLDLGS 949 (953)
Q Consensus 934 ~~yp~~l~~~li~~a~ 949 (953)
.+ ..|+...+.+|.
T Consensus 512 -vk-~~li~~vlNlag 525 (662)
T KOG2156|consen 512 -VK-APLIQDVLNLAG 525 (662)
T ss_pred -hh-hHHHHHHHHhcc
Confidence 12 355665665554
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.49 Score=46.06 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=38.2
Q ss_pred cEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 251 PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
|+||||....-..--.+....+++.... ....+..+++.+.+.=..|+++-|++
T Consensus 3 ~~FiKP~~~~K~F~g~V~~~~~dl~~~~----~~~~~~~V~vSe~v~~~~E~R~fi~~ 56 (130)
T PF14243_consen 3 PVFIKPPDDDKSFTGRVFRSGEDLIGFG----SLDPDTPVLVSEVVEIESEWRCFIVD 56 (130)
T ss_pred CeEeCCCCCCCcceeEEEcchhhccccC----CCCCCceEEEeceEeeeeeEEEEEEC
Confidence 8999999966655555566566544211 11356789999999755999999994
|
|
| >KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.22 Score=57.54 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHH----------------hCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 363 PIVVINSIREGASLLFQR----------------LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 363 ~~~~~~~i~~~a~~~~~a----------------Lg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
++.+..+|+++..+.+.+ .-|-.+.|+|+++ |+|=.+|++|||-.|.
T Consensus 439 t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiil-----------------DedLkpwLlEVNISPS 501 (662)
T KOG2156|consen 439 TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIIL-----------------DEDLKPWLLEVNISPS 501 (662)
T ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEe-----------------cCccceeeEEEecccc
Confidence 455677788888877654 2355678999886 6777899999999998
Q ss_pred CCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 427 ~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
+.. -+|..+.. ...|+..++..|.=+.+
T Consensus 502 LhS--~tpld~~v----k~~li~~vlNlagi~~p 529 (662)
T KOG2156|consen 502 LHS--ETPLDCSV----KAPLIQDVLNLAGIKVP 529 (662)
T ss_pred ccc--CCCccchh----hhHHHHHHHHhcceecC
Confidence 754 35544332 23567777777666654
|
|
| >KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.9 Score=52.23 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=120.0
Q ss_pred CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhh
Q 002207 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~ 242 (953)
-+|+.+-...-+|..|-.+ ++ -.+.-||+-++..---+-.|+.....+|+..||++|++.+++++..+ ..+...++.
T Consensus 90 ~CdcLIsFhSsGFPLdKAi-aY-~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn-~~~~~lie~ 166 (1018)
T KOG1057|consen 90 LCDCLISFHSKGFPLDKAV-AY-AKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPN-PKLCNLIEG 166 (1018)
T ss_pred ccceEEEeccCCCChHHHH-HH-HHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCC-hHHhhhhcC
Confidence 3676665554455544333 34 34567999999999999999999999999999999998888765322 112222211
Q ss_pred cCC-----CCCCCcEEEeeCCCCC-ceeEEEeCC----HHHHHHHHHHhHh-------cCCCCcEEEeccCC-CCeEEEE
Q 002207 243 NKL-----DPNSGKVVVKPTRAGS-SIGVTVAYG----VIDSLKKAKGIIL-------EGIDDRVVVELFLE-GGSEFTA 304 (953)
Q Consensus 243 ~~l-----~~~~~PvvVKP~~~gs-S~GV~~v~~----~~el~~~a~~~~~-------~~~~~~vlVEefI~-Gg~E~tv 304 (953)
... +-+.-|+|=||.++-- ++=|..-.+ -..+..++...-+ -+....++-|+|++ +|.++-|
T Consensus 167 eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKv 246 (1018)
T KOG1057|consen 167 EDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKV 246 (1018)
T ss_pred CCeEEEcceeccCCcccCCCCcccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceE
Confidence 100 1123389999986532 222222111 1233333321100 01235789999993 2377766
Q ss_pred EEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 002207 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 305 ~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
-.++-... ..+..-.+. .|-...-.+.+ .....|.-++++. +++|.+++-|++=.
T Consensus 247 YTVGp~Ya-HAEaRKSPv-------------------vDGkV~Rns~G-KEvRYpv~Ls~~E----K~iA~KVciAF~Q~ 301 (1018)
T KOG1057|consen 247 YTVGPDYA-HAEARKSPV-------------------VDGKVERNSDG-KEVRYPVILNSSE----KQIARKVCIAFKQT 301 (1018)
T ss_pred EeeCcchh-hhhhccCcc-------------------ccceeeecCCC-ceeeceeecChhh----HHHHhHHHhhcccc
Confidence 66642110 000000111 11000001111 2344566677776 67888888888843
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
++.+|.. ..+|.=||++||.
T Consensus 302 -VCGFDLL------------------Ra~G~SYVcDVNG 321 (1018)
T KOG1057|consen 302 -VCGFDLL------------------RANGKSYVCDVNG 321 (1018)
T ss_pred -ccchHHh------------------hcCCceEEEeccc
Confidence 7778863 4679999999993
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=91.75 E-value=1.1 Score=52.36 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=59.1
Q ss_pred cCCccEECCCHHHHHHhccHHHHHHHHHHCCCC-------------CCCeEEecCCc--c--chhhhhhhhhhcCCCCCC
Q 002207 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFI-------------TVPSFLLQGSE--V--NESELSNWFVTNKLDPNS 249 (953)
Q Consensus 187 ~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Gip-------------tp~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~ 249 (953)
.-.++.+|| ..+.+..||..++-+....--. +|.+..+.... . ...++...+.. ..
T Consensus 266 ~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a-----~r 338 (445)
T PF14403_consen 266 DGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIA-----NR 338 (445)
T ss_pred cCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHh-----ch
Confidence 345777764 6889999999887654332211 34455555410 0 00112111111 12
Q ss_pred CcEEEeeCCCCCceeEEEe--CCHHHHHHHHHHhHhcCCCCcEEEeccCCC
Q 002207 250 GKVVVKPTRAGSSIGVTVA--YGVIDSLKKAKGIILEGIDDRVVVELFLEG 298 (953)
Q Consensus 250 ~PvvVKP~~~gsS~GV~~v--~~~~el~~~a~~~~~~~~~~~vlVEefI~G 298 (953)
--+|+||+.+.+|.||..= .+.++..+.+.+. .+...|+|||+.-
T Consensus 339 ~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a----~~~~yilQe~v~~ 385 (445)
T PF14403_consen 339 DRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEA----AREPYILQEYVRP 385 (445)
T ss_pred hcEEeccccccCCCCeEECCcCCHHHHHHHHHHH----hcCCcEEEEEecC
Confidence 2599999999999999874 3445544444433 2458999999974
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=89.51 E-value=4.1 Score=39.70 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.0
Q ss_pred eEEEEEEEEcCCCcEEEEeeCCC
Q 002207 893 FSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 893 ~ariDf~v~~~~g~~~viEINt~ 915 (953)
..-+|+-+.. +|+.+|+|+|..
T Consensus 94 ~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 94 AYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred eEEEEEEEeC-CCCEEEEEecCc
Confidence 4459998885 789999999963
|
|
| >KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.7 Score=49.84 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 723 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 723 ~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
....||||+...-+.||..+++.+++.. +...+.- +.....++.++|..||+-.
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~----~~~~~~~-------------~~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQA----IVDSFDS-------------FISENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhh----hhhcccc-------------cccccccccceeeeeccCc
Confidence 4679999999999999999998888763 3222110 1112235778888888754
|
|
| >KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.22 E-value=3.1 Score=49.29 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh---HhcCCCCcEEEeccCC
Q 002207 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI---ILEGIDDRVVVELFLE 297 (953)
Q Consensus 249 ~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~---~~~~~~~~vlVEefI~ 297 (953)
...+||||+...-+.||..+++.+++....... .....+...+|..||+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~ 250 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYID 250 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeecc
Confidence 458999999999999999999999876554310 1122356778888885
|
|
| >TIGR02049 gshA_ferroox glutamate--cysteine ligase, T | Back alignment and domain information |
|---|
Probab=86.81 E-value=17 Score=41.22 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=45.0
Q ss_pred EEEeeCCCCCceeEEEeCCHHHHHHHHHH---hHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceE
Q 002207 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKG---IILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTE 324 (953)
Q Consensus 252 vvVKP~~~gsS~GV~~v~~~~el~~~a~~---~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~e 324 (953)
||||...|..+.||..|++.+|....-++ -++. ..-.+|||||-|. |...++ +...+|++...+.
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~-----T~E~~~---~avAEPVVYmid~ 331 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY-----TFEMFN---EAVAEPVVYMIGR 331 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc-----eeeeeC---CcccCceEEEECC
Confidence 99999999999999999999987653332 1211 1235899999886 333443 2345677766654
Q ss_pred EE
Q 002207 325 VE 326 (953)
Q Consensus 325 i~ 326 (953)
..
T Consensus 332 ~v 333 (403)
T TIGR02049 332 TV 333 (403)
T ss_pred EE
Confidence 44
|
ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase. |
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=85.15 E-value=6.6 Score=36.42 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=26.2
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHH
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i 202 (953)
..++|+|++.-.-.. -..+...|+..|||..|++..++.+
T Consensus 60 ~~~idlvvvGPE~pL--~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 60 ENKIDLVVVGPEAPL--VAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp HTTESEEEESSHHHH--HTTHHHHHHHTT-CEES--HHHHHH
T ss_pred HcCCCEEEECChHHH--HHHHHHHHHHCCCcEECcCHHHHhc
Confidence 458999998642100 0137789999999999999887765
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.67 E-value=8.5 Score=46.98 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHH---------hhc
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT---------SKL 721 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~---------~~l 721 (953)
..+++.+ +.-||+-.+..-..+..|.-...++ |+..||++|++..+++... + .+....+. +-+
T Consensus 106 KAiaY~k-LRnPFviNdL~mQyll~DRR~Vy~i---Le~~gI~~PRya~~nr~~p-n---~~~~~lie~eD~vEVnGevf 177 (1018)
T KOG1057|consen 106 KAVAYAK-LRNPFVINDLDMQYLLQDRREVYSI---LEAEGIPLPRYAILNRDPP-N---PKLCNLIEGEDHVEVNGEVF 177 (1018)
T ss_pred HHHHHHH-hcCCeeeccccHHHHHHHHHHHHHH---HHHcCCCCceeEeecCCCC-C---hHHhhhhcCCCeEEEcceec
Confidence 5666655 4468998888888888898888777 9999999999888876432 1 11111111 124
Q ss_pred CCCcEEEecCCC
Q 002207 722 QCKTLCVKPARD 733 (953)
Q Consensus 722 g~~PlvVKP~~~ 733 (953)
..|+|=||.++
T Consensus 178 -~KPFVEKPVs~ 188 (1018)
T KOG1057|consen 178 -QKPFVEKPVSA 188 (1018)
T ss_pred -cCCcccCCCCc
Confidence 47999999864
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=81.24 E-value=5 Score=47.08 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCCEeCCChHHHHHhcChHHHHHHHHHHHHCCC-----------CccCeEEEeCccccCC-chhhHHHHHHhhcCCCcEE
Q 002207 660 GVPYTGPGVMASKTCMDKVATSLALNHLADLGV-----------LTINKDVRRKEDLLKT-PIVDIWHELTSKLQCKTLC 727 (953)
Q Consensus 660 gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GI-----------ptp~~~~v~~~~~~~~-~~~~~~~~~~~~lg~~Plv 727 (953)
.++.+|| ..+.+.-||..++-+-.. +...+ .+|-+..+..+...-. ...+..+.+.+. .--+|
T Consensus 268 av~~vgs--frs~l~hnK~iFaiL~d~-~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~--r~~lV 342 (445)
T PF14403_consen 268 AVCMVGS--FRSQLLHNKIIFAILHDE-RTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIAN--RDRLV 342 (445)
T ss_pred CeEEecc--hhhhhhhhhHHHHHhcCh-hhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhc--hhcEE
Confidence 4666654 567777788777654111 11111 2555666655211100 012223333222 24689
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+||.++.+|.||..=...+. ++..++|+++. .+++|+|||+.-.
T Consensus 343 LKP~D~Ygg~GV~~G~e~~~-eeW~~~l~~a~---------------------~~~yilQe~v~~~ 386 (445)
T PF14403_consen 343 LKPNDEYGGKGVYIGWETSP-EEWEAALEEAA---------------------REPYILQEYVRPP 386 (445)
T ss_pred eccccccCCCCeEECCcCCH-HHHHHHHHHHh---------------------cCCcEEEEEecCC
Confidence 99999999999996333222 22335777764 4689999999865
|
|
| >PRK05849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.54 E-value=1.7e+02 Score=37.22 Aligned_cols=192 Identities=16% Similarity=0.234 Sum_probs=101.7
Q ss_pred cChHHHHHHHHHHHH--CCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC------CCCcceE--EeCC
Q 002207 675 MDKVATSLALNHLAD--LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD------GCSTGVA--RLCC 744 (953)
Q Consensus 675 ~DK~~tk~~~~~l~~--~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~------gsS~GV~--~v~~ 744 (953)
.-|..+-.. |+. .|.++|+.+++...+|.. +....++.+...++..|++|+.+.- .|..|.+ .++-
T Consensus 9 ~~KA~tL~~---L~~~~~~~~i~~~~v~~~~e~~~-~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV 84 (783)
T PRK05849 9 QTKAETLAN---LQPILKKAKILPLLLFSVREWLS-NKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNV 84 (783)
T ss_pred chHHHHHHH---HHhhhcCCCCCCeEEeCHHhhcc-CHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecC
Confidence 356666444 777 899999999998877654 3344556666665457999998742 2334543 2221
Q ss_pred -cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEE
Q 002207 745 -AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 823 (953)
Q Consensus 745 -~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~ 823 (953)
.++.+++.+|++..++-... .++..|+||+.|.+... . | +=||..
T Consensus 85 ~~~~~~~L~~AI~~V~aS~~~--------------~~~~aVlVQ~MV~~~~~-----------S-----G----V~FTrd 130 (783)
T PRK05849 85 NADSKDQLLKAIEKVIASYGT--------------SKDDEILVQPMLEDIVL-----------S-----G----VAMSRD 130 (783)
T ss_pred CCCcHHHHHHHHHHHHHhhCC--------------CCCCeEEEEeCccCCCc-----------e-----E----EEEECC
Confidence 12223455677777653100 12467999999974210 0 0 111111
Q ss_pred EEcCCCCceeeCceEEEecCCccccccccccCCCc---eeEcC-CCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q 002207 824 VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG---INLTP-PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF 899 (953)
Q Consensus 824 vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~---~~~~P-~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~ 899 (953)
-....... + ++....+ .-+...+|.. ..+.. .....++++..+++.+.++++-+.+|.. ..-|+|-
T Consensus 131 P~tg~~~~--~---iey~~~G----~ge~VVsG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~d-pqDIEfa 200 (783)
T PRK05849 131 PESGAPYY--V---INYDESG----STDSVTSGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFGCD-FLDIEFA 200 (783)
T ss_pred CCCCCCce--E---EEEcCCC----CCcceecccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcCCC-CeeeEEE
Confidence 00000000 0 0000000 0000000100 00000 0001256788899999999988888764 6679999
Q ss_pred EEcCCCcEEEEeeCCC
Q 002207 900 VNVDNGEVLIIEVNTV 915 (953)
Q Consensus 900 v~~~~g~~~viEINt~ 915 (953)
++. +|++|++-+-++
T Consensus 201 id~-~g~L~lLQ~RPi 215 (783)
T PRK05849 201 IDE-KEELYILQVRPI 215 (783)
T ss_pred Ecc-CCEEEEEEccCC
Confidence 964 699999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 953 | ||||
| 3k3p_A | 383 | Crystal Structure Of The Apo Form Of D-Alanine:d-Al | 2e-23 | ||
| 3k3p_A | 383 | Crystal Structure Of The Apo Form Of D-Alanine:d-Al | 1e-07 | ||
| 4fu0_A | 357 | Crystal Structure Of Vang D-Ala:d-Ser Ligase From E | 7e-19 | ||
| 4fu0_A | 357 | Crystal Structure Of Vang D-Ala:d-Ser Ligase From E | 1e-07 | ||
| 3i12_A | 364 | The Crystal Structure Of The D-alanyl-alanine Synth | 1e-18 | ||
| 3i12_A | 364 | The Crystal Structure Of The D-alanyl-alanine Synth | 3e-07 | ||
| 3q1k_A | 367 | The Crystal Structure Of The D-Alanyl-Alanine Synth | 1e-17 | ||
| 3q1k_A | 367 | The Crystal Structure Of The D-Alanyl-Alanine Synth | 4e-06 | ||
| 3e5n_A | 386 | Crystal Strucutre Of D-Alanine-D-Alanine Ligase Fro | 2e-15 | ||
| 3e5n_A | 386 | Crystal Strucutre Of D-Alanine-D-Alanine Ligase Fro | 1e-07 | ||
| 3rfc_A | 384 | Crystal Structure Of D-Alanine-D-Alanine Ligase A F | 3e-15 | ||
| 3rfc_A | 384 | Crystal Structure Of D-Alanine-D-Alanine Ligase A F | 1e-07 | ||
| 1iow_A | 306 | Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A | 3e-14 | ||
| 1iov_A | 306 | Complex Of D-Ala:d-Ala Ligase With Adp And A Phosph | 6e-14 | ||
| 3v4z_A | 309 | D-Alanine--D-Alanine Ligase From Yersinia Pestis Le | 7e-14 | ||
| 2yzm_A | 319 | Structure Of D-Alanine:d-Alanine Ligase With Substr | 5e-13 | ||
| 2yzm_A | 319 | Structure Of D-Alanine:d-Alanine Ligase With Substr | 2e-12 | ||
| 2fb9_A | 322 | Crystal Structure Of The Apo Form Of D-alanine: D-a | 5e-13 | ||
| 2fb9_A | 322 | Crystal Structure Of The Apo Form Of D-alanine: D-a | 1e-12 | ||
| 3se7_A | 346 | Ancient Vana Length = 346 | 2e-12 | ||
| 3lwb_A | 373 | Crystal Structure Of Apo D-Alanine:d-Alanine Ligase | 4e-12 | ||
| 3lwb_A | 373 | Crystal Structure Of Apo D-Alanine:d-Alanine Ligase | 1e-09 | ||
| 2yzg_A | 319 | Crystal Structure Of D-Ala:d-Ala Ligase From Thermu | 4e-12 | ||
| 2yzg_A | 319 | Crystal Structure Of D-Ala:d-Ala Ligase From Thermu | 3e-11 | ||
| 3tqt_A | 372 | Structure Of The D-Alanine-D-Alanine Ligase From Co | 1e-11 | ||
| 3tqt_A | 372 | Structure Of The D-Alanine-D-Alanine Ligase From Co | 8e-08 | ||
| 1e4e_A | 343 | D-Alanyl-D-Lacate Ligase Length = 343 | 2e-11 | ||
| 3r23_A | 307 | Crystal Structure Of D-Alanine--D-Alanine Ligase Fr | 7e-11 | ||
| 3r23_A | 307 | Crystal Structure Of D-Alanine--D-Alanine Ligase Fr | 4e-06 | ||
| 1e4e_B | 343 | D-Alanyl-D-Lacate Ligase Length = 343 | 9e-11 | ||
| 3n8d_A | 364 | Crystal Structure Of Staphylococcus Aureus Vrsa-9 D | 1e-10 | ||
| 3n8d_A | 364 | Crystal Structure Of Staphylococcus Aureus Vrsa-9 D | 1e-06 | ||
| 2i80_A | 360 | Allosteric Inhibition Of Staphylococcus Aureus D-Al | 1e-10 | ||
| 2i80_A | 360 | Allosteric Inhibition Of Staphylococcus Aureus D-Al | 1e-06 | ||
| 2i87_A | 364 | Allosteric Inhibition Of Staphylococcus Aureus D-Al | 1e-10 | ||
| 2i87_A | 364 | Allosteric Inhibition Of Staphylococcus Aureus D-Al | 1e-06 | ||
| 4egj_A | 334 | Crystal Structure Of D-Alanine-D-Alanine Ligase Fro | 2e-10 | ||
| 4egj_A | 334 | Crystal Structure Of D-Alanine-D-Alanine Ligase Fro | 3e-07 | ||
| 4eg0_A | 317 | Crystal Structure Of D-Alanine--D-Alanine Ligase Fr | 2e-10 | ||
| 4eg0_A | 317 | Crystal Structure Of D-Alanine--D-Alanine Ligase Fr | 1e-06 | ||
| 4egq_A | 316 | Crystal Structure Of D-Alanine-D-Alanine Ligase B F | 1e-09 | ||
| 4egq_A | 316 | Crystal Structure Of D-Alanine-D-Alanine Ligase B F | 2e-06 | ||
| 1ehi_A | 377 | D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-R | 2e-09 | ||
| 1ehi_A | 377 | D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-R | 3e-08 | ||
| 2pvp_A | 367 | Crystal Structure Of D-Alanine-D-Alanine Ligase Fro | 2e-08 | ||
| 2pvp_A | 367 | Crystal Structure Of D-Alanine-D-Alanine Ligase Fro | 1e-04 |
| >pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383 | Back alignment and structure |
|
| >pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383 | Back alignment and structure |
|
| >pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From Enterococcus Faecalis Length = 357 | Back alignment and structure |
|
| >pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From Enterococcus Faecalis Length = 357 | Back alignment and structure |
|
| >pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 364 | Back alignment and structure |
|
| >pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 364 | Back alignment and structure |
|
| >pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp Length = 367 | Back alignment and structure |
|
| >pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp Length = 367 | Back alignment and structure |
|
| >pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 386 | Back alignment and structure |
|
| >pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 386 | Back alignment and structure |
|
| >pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From Xanthomonas Oryzae Pathovar Oryzae With Adp Length = 384 | Back alignment and structure |
|
| >pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From Xanthomonas Oryzae Pathovar Oryzae With Adp Length = 384 | Back alignment and structure |
|
| >pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 | Back alignment and structure |
|
| >pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate Length = 306 | Back alignment and structure |
|
| >pdb|3V4Z|A Chain A, D-Alanine--D-Alanine Ligase From Yersinia Pestis Length = 309 | Back alignment and structure |
|
| >pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 Length = 319 | Back alignment and structure |
|
| >pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 Length = 319 | Back alignment and structure |
|
| >pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-alanine: D-alanine Ligase (ddl) From Thermus Caldophilus: A Basis For The Substrate-induced Conformational Changes Length = 322 | Back alignment and structure |
|
| >pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-alanine: D-alanine Ligase (ddl) From Thermus Caldophilus: A Basis For The Substrate-induced Conformational Changes Length = 322 | Back alignment and structure |
|
| >pdb|3SE7|A Chain A, Ancient Vana Length = 346 | Back alignment and structure |
|
| >pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis Length = 373 | Back alignment and structure |
|
| >pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis Length = 373 | Back alignment and structure |
|
| >pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 Length = 319 | Back alignment and structure |
|
| >pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 Length = 319 | Back alignment and structure |
|
| >pdb|3TQT|A Chain A, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella Burnetii Length = 372 | Back alignment and structure |
|
| >pdb|3TQT|A Chain A, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella Burnetii Length = 372 | Back alignment and structure |
|
| >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 | Back alignment and structure |
|
| >pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Length = 307 | Back alignment and structure |
|
| >pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Length = 307 | Back alignment and structure |
|
| >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 | Back alignment and structure |
|
| >pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364 | Back alignment and structure |
|
| >pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364 | Back alignment and structure |
|
| >pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d-Alanine Ligase Revealed By Crystallographic Studies Length = 360 | Back alignment and structure |
|
| >pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d-Alanine Ligase Revealed By Crystallographic Studies Length = 360 | Back alignment and structure |
|
| >pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d-Alanine Ligase Revealed By Crystallographic Studies Length = 364 | Back alignment and structure |
|
| >pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d-Alanine Ligase Revealed By Crystallographic Studies Length = 364 | Back alignment and structure |
|
| >pdb|4EGJ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Burkholderia Xenovorans Length = 334 | Back alignment and structure |
|
| >pdb|4EGJ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Burkholderia Xenovorans Length = 334 | Back alignment and structure |
|
| >pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Burkholderia Ambifaria Length = 317 | Back alignment and structure |
|
| >pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Burkholderia Ambifaria Length = 317 | Back alignment and structure |
|
| >pdb|4EGQ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase B From Burkholderia Pseudomallei Length = 316 | Back alignment and structure |
|
| >pdb|4EGQ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase B From Burkholderia Pseudomallei Length = 316 | Back alignment and structure |
|
| >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 | Back alignment and structure |
|
| >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 | Back alignment and structure |
|
| >pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori Length = 367 | Back alignment and structure |
|
| >pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori Length = 367 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 1e-54
Identities = 83/393 (21%), Positives = 133/393 (33%), Gaps = 53/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSA 129
L + ++CGG S E IS+ SA+++++ + L+ +ID + S
Sbjct: 5 LHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSP 64
Query: 130 QVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ + S + + D VFP +HG GEDG +Q +LE N
Sbjct: 65 DHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLN 124
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+P+VG ++ +K + G V L + E
Sbjct: 125 LPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSE-- 182
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIV 306
+ VK GSS+ KA ++ DDR++VE + G E V
Sbjct: 183 --LFVKAVSLGSSVATLPVKTE-TEFTKA----VKEVFRYDDRLMVEPRIR-GREIECAV 234
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
L + P LP E+ ++Y KYL T V
Sbjct: 235 LG-----NGAPKASLPGEIIP----------HHDYYSYDAKYLDPNGATTTTSVDLSESV 279
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
I++ A F+ + AR+D +F+ T +L +IN I G
Sbjct: 280 TKQIQQIAIDAFKMVHCSGMARVD-FFV----------------TPNNKVLVNEINTIPG 322
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + G N+L +I A R
Sbjct: 323 FTNISMYPKMWEASGLPCPNLLDQLIELAIDRH 355
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 9e-36
Identities = 88/473 (18%), Positives = 146/473 (30%), Gaps = 138/473 (29%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVW--LNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
+ V+ GG ++E ++S+ S N+ L+ + ++ +D
Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKY---LISVI----------FIDHV------ 47
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
W L E LA + + + +A + + L
Sbjct: 48 ---GRW------YLIDQPEMFLAHSPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYS 98
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
D F VHG GEDG LQ LLE +PY G V +S
Sbjct: 99 ADCV-----------------------FPMVHGTQGEDGALQGLLELLNLPYVGANVQSS 135
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
CM+K T L G+ ++ D + ++ L + L VK
Sbjct: 136 AVCMEKDLTKTV---LRAGGIPVVDWHTLSPRDATE----GVYQRLLDRWGTSELFVKAV 188
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S + + T KA++E + +++ EP +
Sbjct: 189 SLGSSVATLPVKTETEFT---KAVKE----------VFRYD--------DRLMV-EPRIR 226
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT--VKESGDILSL 849
R EI V+G + S+ + D S
Sbjct: 227 -----------------------GR--EIECAVLGN----GAPKASLPGEIIPHHDYYSY 257
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 909
+ K+ G T + S + +Q + G +R+D FV N +VL+
Sbjct: 258 DAKYLDPNGATTT-TSVDL-SESVTKQIQQIAIDAFKMVHCSGMARVDFFVT-PNNKVLV 314
Query: 910 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQF------FRKVLD----LGSERF 952
E+NT+PG T + MYP + +LD L +R
Sbjct: 315 NEINTIPGFTNIS------------MYPKMWEASGLPCPNLLDQLIELAIDRH 355
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 1e-52
Identities = 95/405 (23%), Positives = 150/405 (37%), Gaps = 64/405 (15%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN------- 120
MAK LRVG++ GG SAE +SL SA++++D I V ID+
Sbjct: 1 MAK-------LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVND 53
Query: 121 --LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGED 178
+ P+ ++ VD++FP +HG GED
Sbjct: 54 AENYLQNADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238
G +Q +L N+PFVG+ + DK A + G P L + + +
Sbjct: 114 GSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAE 173
Query: 239 WFVTNKLD-PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVEL 294
V ++L P + VKP GSS+GV+ ++A + D +VVVE
Sbjct: 174 --VESRLGLP----LFVKPANQGSSVGVSKVANE-AQYQQA----VALAFEFDHKVVVEQ 222
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
++ G E VL + +P E+ L + Y KY+
Sbjct: 223 GIK-GREIECAVLG-----NDNPQASTCGEIVL----------NSEFYAYDTKYIDDNGA 266
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P + P V + IR A +Q LG AR+D FL T
Sbjct: 267 QVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD-VFL----------------TADN 309
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++ +IN + G S + G +++++ +I A R
Sbjct: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERH 354
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-34
Identities = 69/327 (21%), Positives = 116/327 (35%), Gaps = 86/327 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V++S CMDK L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRL---LRDAGLNIAPF 158
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ + ++ L L VKPA G S GV+++ +A+
Sbjct: 159 ITLTRTNRHAFSFAEVESRLGL-----PLFVKPANQGSSVGVSKVANEAQYQ---QAVAL 210
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ ++++ E + KG
Sbjct: 211 ----------AFEFD--------HKVVV-EQGI---------------------KG---- 226
Query: 818 VEITVGVIGKCGSMHSLMPSVT--VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI V+G + S + + + + + K+ G + PA I +E D
Sbjct: 227 REIECAVLGN----DNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVV-VPAQI-PSEVND 280
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
K + L G +R+D F+ + EV+I E+NT+PG T + M
Sbjct: 281 KIRAIAIQAYQTLGCAGMARVDVFLT-ADNEVVINEINTLPGFTNIS------------M 327
Query: 936 YPHQF------FRKVLD----LGSERF 952
YP + + ++ L ER
Sbjct: 328 YPKLWQASGLGYTDLISRLIELALERH 354
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 2e-52
Identities = 85/390 (21%), Positives = 147/390 (37%), Gaps = 57/390 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++G+I GG S E IS+ SAR V H+ I ++
Sbjct: 4 MKIGIIFGGVSEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGN 63
Query: 138 DFDFKLESLAQGFGSL-SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
L G L E ++ +D+V P +HG+ GEDG IQ +LE +P+VG
Sbjct: 64 CRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCD 123
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD-PNSGKVVVK 255
++ DK L G T + + E T++L P V VK
Sbjct: 124 IQSSALCMDKSLTYLVARSAGIATPNFWTVTADE--------KIPTDQLTYP----VFVK 171
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGSG 312
P R+GSS GV+ + L+ A +E D +V++E + G+E V+ G
Sbjct: 172 PARSGSSFGVSKVARE-EDLQGA----VEAAREYDSKVLIEEAVI-GTEIGCAVM----G 221
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTPPRFPIVVINS 369
+ ++ L F ++ P + A P +
Sbjct: 222 NGPELITGEVDQITL----------SHGFFKIHQESTPESGSDNSAVTVPADISTTSRSL 271
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+++ A +++ LG +R+D FL TE G ++ ++N GM
Sbjct: 272 VQDTAKAVYRALGCRGLSRVD-LFL----------------TEDGKVVLNEVNTFPGMTS 314
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S ++++ ++ A +
Sbjct: 315 YSRYPRMMTAAGLSRADVIDRLVSLALAGK 344
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-35
Identities = 78/310 (25%), Positives = 118/310 (38%), Gaps = 88/310 (28%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
V +HG +GEDG +Q LLE G+PY G + +S CMDK T L G+
Sbjct: 94 VLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLV---ARSAGIATPNF 150
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T+ D + D L P+ VKPAR G S GV+++ EDL
Sbjct: 151 WTVTADEKIPTDQLTYPVF----------------VKPARSGSSFGVSKVAREEDLQ--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A+E +R + ++LI E V
Sbjct: 192 GAVEA----------AREYD--------SKVLI-EEAVI--------------------- 211
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIMS 870
G EI V+G + + + S + ++ +G + + PA I S
Sbjct: 212 G----TEIGCAVMGNGPELITGEV-DQITLSHGFFKIHQESTPESGSDNSAVTVPADI-S 265
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
T + + + + AL G SR+D F+ ++G+V++ EVNT PGMT +
Sbjct: 266 TTSRSLVQDTAKAVYRALGCRGLSRVDLFLT-EDGKVVLNEVNTFPGMTSYS-------- 316
Query: 931 EQPPMYPHQF 940
YP
Sbjct: 317 ----RYPRMM 322
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 5e-52
Identities = 99/413 (23%), Positives = 149/413 (36%), Gaps = 74/413 (17%)
Query: 65 DQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---- 120
M K +RVGLI GG SAE +SL SAR++LD + ID+
Sbjct: 17 QGHMRK-------IRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWH 69
Query: 121 -----LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175
+ + L AQ E A +D+VFP +HG
Sbjct: 70 VNDPDSFLLHADDPARIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTL 129
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQ-----GFITVPSFLLQGSE 230
GEDG +Q +L N+PFVG+G A DK +M+K+ P
Sbjct: 130 GEDGSLQGLLRMANLPFVGSGVLGSAVAMDK-----DMAKRVLRDARLAVAPFVCFDRHT 184
Query: 231 VNESELSNWFVTNKLD-PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI 286
+++ + +L P + VKP GSS+GV+ D+ A L
Sbjct: 185 AAHADVDT--LIAQLGLP----LFVKPANQGSSVGVSQVRTA-DAFAAA----LALALAY 233
Query: 287 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 346
D +V+VE + G E VL + P + EV + DA ++Y
Sbjct: 234 DHKVLVEAAVA-GREIECAVLG-----NAVPHASVCGEVVVH----------DAFYSYAT 277
Query: 347 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 406
KY+ P I++ A +Q LG AR+D FL
Sbjct: 278 KYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVD-VFL------------ 324
Query: 407 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G I+ ++N + G + S + G + ++ +I A R
Sbjct: 325 ----CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERH 373
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 93/427 (21%), Positives = 142/427 (33%), Gaps = 108/427 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ L A + P L+ G+D
Sbjct: 25 VGLIFGGKSAEHEVSLQSARNI---LDALDPQRFEPVLI--------GIDKQGQ------ 67
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
W V + + A I R+ L + ++ D
Sbjct: 68 ---W-----HVNDPDSFLLHADDPARIALHRSGRGVALLPGAQQQQLRPIQPEQALAQID 119
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ VF VHG +GEDG+LQ LL +P+ G GV+ S
Sbjct: 120 V-----------------------VFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAV 156
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
MDK L D + + + + +L L VKPA
Sbjct: 157 AMDKDMAKRV---LRDARLAVAPFVCFDRHTAAHADVDTLIAQLGL-----PLFVKPANQ 208
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S GV+++ A+ AL + A+ ++L+ E V
Sbjct: 209 GSSVGVSQVRTADAFA---AALAL----------ALAYD--------HKVLV-EAAVA-- 244
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
G EI V+G H+ + V S K+
Sbjct: 245 -------------------G----REIECAVLGN-AVPHASVC-GEVVVHDAFYSYATKY 279
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
G + PA I + + +Q AL G +R+D F+ +G ++I EVN
Sbjct: 280 ISEHGAEIV-IPADI-DAQTQQRIQQIAVQAYQALGCAGMARVDVFLC-ADGRIVINEVN 336
Query: 914 TVPGMTP 920
T+PG T
Sbjct: 337 TLPGFTR 343
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 9e-52
Identities = 84/403 (20%), Positives = 152/403 (37%), Gaps = 59/403 (14%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL-VRCYYIDRN---LNA 123
M K RV LI GG S+E +S SA++ + I+ + + I +N L+
Sbjct: 1 MTK-------KRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDT 53
Query: 124 YAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
+ + D ++++ A A + DI FP +HG GEDG +Q
Sbjct: 54 ESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQG 113
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF----ITVPSFLLQGSEVNESELSNW 239
+ + + P+VG R +FDK ++K+ I +++ V+ +NW
Sbjct: 114 LFKLLDKPYVGAPLRGHAVSFDK-----ALTKELLTVNGIRNTKYIV----VDPESANNW 164
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFL 296
+ V VK GSS+G++ + +A L D +V++E +
Sbjct: 165 SWDKIVAELGNIVFVKAANQGSSVGISRVTNA-EEYTEA----LSDSFQYDYKVLIEEAV 219
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
G E V+ G D P+V + QGS D ++Y K++ V +
Sbjct: 220 NGARELEVGVI----GND-QPLVSEIGAHTVPNQGS-----GDGWYDYNNKFVDNSAVHF 269
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P + V +++ A ++ L L AR+D + L E
Sbjct: 270 QIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD-FLL----------------DENNVP 312
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ N + G S + +++ ++ +I + F
Sbjct: 313 YLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFEDF 355
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-34
Identities = 71/286 (24%), Positives = 103/286 (36%), Gaps = 60/286 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
F VHG +GEDGTLQ L + PY G + DK T L G+
Sbjct: 97 FFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKEL---LTVNGIRNTKY 153
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V E I EL + + VK A G S G++R+ AE+ T +AL +
Sbjct: 154 IVVDPESANNWSWDKIVAELGN-----IVFVKAANQGSSVGISRVTNAEEYT---EALSD 205
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ ++LI E V +R
Sbjct: 206 SF------QYDY------------KVLI-EEAVN----------------------GAR- 223
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKE---SGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
E+ VGVIG + S + + TV KF + ++ PA + S E
Sbjct: 224 -ELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQ-IPAQL-SPEVT 280
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ KQ L L G +R+D ++ +N + E NT+PG T
Sbjct: 281 KEVKQMALDAYKVLNLRGEARMDFLLD-ENNVPYLGEPNTLPGFTN 325
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 3e-50
Identities = 92/397 (23%), Positives = 148/397 (37%), Gaps = 57/397 (14%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M K + ++ GG SAE +S+ +A++VL+ I D V YI +
Sbjct: 1 MTK-------ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITND--GDWRK 51
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ + + + LE+ S D VFP +HG GEDG IQ + E
Sbjct: 52 QNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEV 111
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW-FVTNKLD 246
+VP+VG G + + DK +G +P SE + E + V +KL+
Sbjct: 112 LDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLN 171
Query: 247 -PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEF 302
P V VKP GSS+G++ LK+ ++ D ++V+E + E
Sbjct: 172 YP----VFVKPANLGSSVGISKCNNE-AELKEG----IKEAFQFDRKLVIEQGVN-AREI 221
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL + +P P EV A ++Y+ KY +V P
Sbjct: 222 EVAVLG-----NDYPEATWPGEVVK----------DVAFYDYKSKYKD-GKVQLQIPADL 265
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
V ++R A F+ R D +F+ TE I + N
Sbjct: 266 DEDVQLTLRNMALEAFKATDCSGLVRAD-FFV----------------TEDNQIYINETN 308
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ G S + +G S+ ++ +I A R
Sbjct: 309 AMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERH 345
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-32
Identities = 59/285 (20%), Positives = 98/285 (34%), Gaps = 62/285 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L E VPY G GV+++ + MDK+ G+ +
Sbjct: 91 VFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQL---FEHRGLPQLPY 147
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ + K +I + KL + VKPA G S G+++ +L + ++E
Sbjct: 148 ISFLRSEYEKYE-HNILKLVNDKLN-YPVFVKPANLGSSVGISKCNNEAELK---EGIKE 202
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ +++I E V
Sbjct: 203 ----------AFQFD--------RKLVI-EQGV---------------------NA---- 218
Query: 818 VEITVGVIGKCGSMHSLMPSVT--VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI V V+G + V + + K++ G P + +
Sbjct: 219 REIEVAVLGN----DYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD---LDEDVQL 271
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ A G R D FV ++ ++ I E N +PG T
Sbjct: 272 TLRNMALEAFKATDCSGLVRADFFVT-EDNQIYINETNAMPGFTA 315
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-49
Identities = 83/396 (20%), Positives = 141/396 (35%), Gaps = 64/396 (16%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M + ++V ++ GG S E +S+ SA + +I + I ++
Sbjct: 1 MNR-------IKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCE 53
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSL-SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
+ L + G L + E+ +VD+ F +HG+ GEDG IQ + E
Sbjct: 54 KPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFE 113
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+PFVG ++ DK + G T +++ + V
Sbjct: 114 LSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD--------RPVAATFT 165
Query: 247 -PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEF 302
P V VKP R+GSS GV D L A +E D ++++E + G E
Sbjct: 166 YP----VFVKPARSGSSFGVKKVNSA-DELDYA----IESARQYDSKILIEQAVS-GCEV 215
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTP 359
VL G VV ++ L + IF ++ P ++ P
Sbjct: 216 GCAVL----GNSAALVVGEVDQIRL----------QYGIFRIHQEVEPEKGSENAVITVP 261
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
I+E +++ LG AR+D FL + G I+
Sbjct: 262 ADLSAEERGRIQETVKKIYKTLGCRGLARVD-MFL----------------QDNGRIVLN 304
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
++N + G S + + G S ++ +I A
Sbjct: 305 EVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLA 340
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-35
Identities = 75/310 (24%), Positives = 117/310 (37%), Gaps = 88/310 (28%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + G+
Sbjct: 94 AFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIV---AKNAGIATPAF 150
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
INKD R P+ VKPAR G S GV ++ A++L
Sbjct: 151 WVINKDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSADELD--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A+E +R + +ILI E V
Sbjct: 192 YAIES----------ARQYD--------SKILI-EQAV---------------------S 211
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIMS 870
G E+ V+G ++ ++ I + ++ + G PA + S
Sbjct: 212 G----CEVGCAVLGNSAALVVG-EVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADL-S 265
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
E + ++ ++ I L G +R+D F+ DNG +++ EVNT+PG T S
Sbjct: 266 AEERGRIQETVKKIYKTLGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSY--------S 316
Query: 931 EQPPMYPHQF 940
YP
Sbjct: 317 ----RYPRMM 322
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 6e-49
Identities = 107/412 (25%), Positives = 169/412 (41%), Gaps = 71/412 (17%)
Query: 58 ASAEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117
+ + +M+K + L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I
Sbjct: 25 TGGQQMGRGSMSK-------ETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFI 77
Query: 118 DRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
+ + Q + + P++ D KL + S + +VFP +HG GE
Sbjct: 78 TQAGDFI---KTQEFDSQPSETD-KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGE 133
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQ------GFITVPSFLLQGSEV 231
DG IQ LE +P+VGT + A DK + Q V L E
Sbjct: 134 DGSIQGFLEVLKMPYVGTNILSSSVAMDK-----ITTNQVLESATTIPQVAYVALIEGEP 188
Query: 232 NESELSNWFVTNKLD-PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GID 287
ES+L+ V KL P V VKP GSS+G++ A LK+A + D
Sbjct: 189 LESKLAE--VEEKLIYP----VFVKPANMGSSVGISKAENR-TDLKQA----IALALKYD 237
Query: 288 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRK 347
RV++E ++ E +L G LP E+ A ++Y K
Sbjct: 238 SRVLIEQGVD-AREIEVGIL----GNT-DVKTTLPGEIVK----------DVAFYDYEAK 281
Query: 348 YLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETK 407
Y+ ++ P V++ +R+ A+ F+ LG C +R D +FL
Sbjct: 282 YI-DNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCD-FFL------------- 326
Query: 408 YGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
TE G + ++N + G Q S +G S+S ++ ++ A F
Sbjct: 327 ---TEDGKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEMF 375
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-31
Identities = 61/286 (21%), Positives = 112/286 (39%), Gaps = 66/286 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG +GEDG++Q LE +PY G +++S MDK+ T+ L + + +
Sbjct: 123 VFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLE--SATTIPQVAY 180
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ + L++ + ++ +L + VKPA G S G+++ DL +A+
Sbjct: 181 VALIEGEPLESKLAEVEEKLIY-----PVFVKPANMGSSVGISKAENRTDLK---QAIAL 232
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ + +LI E V+
Sbjct: 233 ----------ALKYD--------SRVLI-EQGVDAR------------------------ 249
Query: 818 VEITVGVIGKCGSMHSLMPSVT--VKESGDILSLEEKFQ-GGTGINLTPPPASIMSTEAL 874
EI VG++G + ++ + + E K+ + + PA I +
Sbjct: 250 -EIEVGILGN----TDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAI---PAEI-DPVIV 300
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+K + L G SR D F+ ++G+V + E+NT+PG T
Sbjct: 301 EKMRDYAATAFRTLGCCGLSRCDFFLT-EDGKVYLNELNTMPGFTQ 345
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 7e-48
Identities = 78/389 (20%), Positives = 135/389 (34%), Gaps = 61/389 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ ++ GG S E IS+ SA ++ + D + ++D N + Y I + ++S A
Sbjct: 21 MEFCVLFGGASFEHEISIVSAIALKGVL--KDRIKYFIFLDENHHFYLIEESNMHSKYFA 78
Query: 138 ---DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ L + F + +V +HG GEDG + +LE Y + F+G
Sbjct: 79 QIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIG 138
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD-PNSGKVV 253
A +++KY L G T+ LL NE +N + P +
Sbjct: 139 PRIEASVLSYNKYLTKLYAKDLGIKTLDYVLL-----NEKNRANALDLMNFNFP----FI 189
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP+ AGSS+GV V L A L+ V++E F++G E+
Sbjct: 190 VKPSNAGSSLGVNVVKEE-KELIYA----LDSAFEYSKEVLIEPFIQGVKEYNLAGC--- 241
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
E K ++++KYL + + +
Sbjct: 242 -KIK-KDFCFSYIE----------EPNKQEFLDFKQKYLDFSRN-KAPKASLSNALEEQL 288
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E L+ L R D +F+ E + +IN I G
Sbjct: 289 KENFKKLYSDLFDGAIIRCD-FFV----------------IE-NEVYLNEINPIPGSLAN 330
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
LF + N+ +++ +
Sbjct: 331 Y-LFDDF---KTTLENLAQSLPKTPKIQI 355
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 57/283 (20%), Positives = 98/283 (34%), Gaps = 64/283 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V VHGG GEDG L SLLE + + GP + AS +K T + DLG+ T++
Sbjct: 111 VINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLT---KLYAKDLGIKTLDY 167
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ +++ + VKP+ G S GV + ++L AL+
Sbjct: 168 VLLNEKNRANALDLM---NFNF-----PFIVKPSNAGSSLGVNVVKEEKELI---YALDS 216
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+S+ E+LI EPF++ +
Sbjct: 217 AF------EYSK------------EVLI-EPFIQ----------------------GVK- 234
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E + + + L ++K+ + +S ++
Sbjct: 235 -EYNLAGCKIKKDFCF--SYIEEPNKQEFLDFKQKYLDFSRNKAPKAS---LSNALEEQL 288
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
K+ + + + L R D F V EV + E+N +PG
Sbjct: 289 KENFKKLYSDLFDGAIIRCDFF--VIENEVYLNEINPIPGSLA 329
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 2e-47
Identities = 100/412 (24%), Positives = 152/412 (36%), Gaps = 57/412 (13%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN------- 120
M+ R R +RV ++ GG S E IS SA S+L ++ V I
Sbjct: 1 MSANDRRDRRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTD 60
Query: 121 -----LNAYAISSAQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGR 174
L QV S + + + G SL A + +VD+VFP +HG
Sbjct: 61 ANPDALTITNRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGP 120
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
+GEDG IQ +LE VP+VG G A DK ++ G +L+
Sbjct: 121 YGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH 180
Query: 235 ELSNWFVTNKLD-PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRV 290
+L P V VKP R GSSIGV+ D L A + D +V
Sbjct: 181 RQ----ECERLGLP----VFVKPARGGSSIGVSRVSSW-DQLPAA----VARARRHDPKV 227
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+VE + G E VL++ G E+ + + +D+ +++ KYL
Sbjct: 228 IVEAAIS-GRELECGVLEMPDG---TLEASTLGEIRV----AGVRGREDSFYDFATKYLD 279
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
P + V +IR+ A F + AR+D F + +
Sbjct: 280 D-AAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVD---------FFLTDDGPV-- 327
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+IN + G S + + G + +L T+I +R L
Sbjct: 328 -------INEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLARGVGL 372
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-32
Identities = 88/435 (20%), Positives = 142/435 (32%), Gaps = 116/435 (26%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V V+FGG ++E +S +S ++ L+ + + I + +PD+ +
Sbjct: 13 VAVVFGGRSNEHAISCVSAGSI---LRNLDSRRFDVIAVG--ITPAGSWVLTDANPDALT 67
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
LP + + E P L + D
Sbjct: 68 ITNRELP---------QVKSGSGTELALPADPRRGGQLVSLPPGAGEV-------LESVD 111
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ VF +HG GEDGT+Q LLE GVPY G GV+AS
Sbjct: 112 V-----------------------VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAV 148
Query: 674 CMDKVATSLALNHLADLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK T LA G+ +R L + L + VKPAR
Sbjct: 149 GMDKEFTKKL---LAADGLPVGAYAVLRPPRSTLHRQECE---RLGL-----PVFVKPAR 197
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S GV+R+ + L A+ +R H P++++ E +
Sbjct: 198 GGSSIGVSRVSSWDQLP---AAVAR----------ARRHD--------PKVIV-EAAISG 235
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS------LMPSVTVKESGDI 846
E+ GV+ + +
Sbjct: 236 R-------------------------ELECGVLEMPDGTLEASTLGEIRVAGVRGREDSF 270
Query: 847 LSLEEKFQ-GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
K+ +++ PA + + + +Q A+ G +R+D F+ D+G
Sbjct: 271 YDFATKYLDDAAELDV---PAKV-DDQVAEAIRQLAIRAFAAIDCRGLARVDFFLT-DDG 325
Query: 906 EVLIIEVNTVPGMTP 920
V I E+NT+PG T
Sbjct: 326 PV-INEINTMPGFTT 339
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-46
Identities = 92/391 (23%), Positives = 139/391 (35%), Gaps = 74/391 (18%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M +RV LI GG S E +SL SA VL HI I ++
Sbjct: 1 MEF-------MRVLLIAGGVSPEHEVSLLSAEGVLRHI---PFPTDLAVIAQD------- 43
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ A + ++ +G D+VFP +HGRFGEDG +Q LE
Sbjct: 44 -GRWLLGEKALTALEAKAAPEGEHPFPPPLS--WERYDVVFPLLHGRFGEDGTVQGFLEL 100
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
P+VG G A DK + +++ G VP ++ E P
Sbjct: 101 LGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPPVVPFD--------PP 152
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTA 304
VKP GSS+G++ L+ A L D++ VVE L E
Sbjct: 153 ----FFVKPANTGSSVGISRVERF-QDLEAA----LALAFRYDEKAVVEKALSPVRELEV 203
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL + EV + ++Y KY P + P
Sbjct: 204 GVLG-----NVFGEASPVGEVRY----------EAPFYDYETKYTP-GRAELLIPAPLDP 247
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+++E A ++ LG+ AR+D +FL E G + ++N I
Sbjct: 248 GTQETVQELALKAYKVLGVRGMARVD-FFL----------------AE-GELYLNELNTI 289
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
G TS + G ++ +LR ++ A
Sbjct: 290 PGFTPTSMYPRLFEAGGVAYPELLRRLVELA 320
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 70/286 (24%), Positives = 102/286 (35%), Gaps = 74/286 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
VF +HG GEDGT+Q LE G PY G GV AS CMDK + L A + V +
Sbjct: 80 VFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQ-AGVPVVPWVA 138
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ K P VKPA G S G++R+ +DL A
Sbjct: 139 VRKG-EPPVVPFDPPFF----------------VKPANTGSSVGISRVERFQDLE---AA 178
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L + + + ++ E +
Sbjct: 179 LAL----------AFRYD--------EKAVV-EKALS----------------------P 197
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
R E+ VGV+G P V+ E K+ G L P P +
Sbjct: 198 VR--ELEVGVLG--NVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAP---LDPGTQ 250
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ ++ L + G +R+D F + GE+ + E+NT+PG TP
Sbjct: 251 ETVQELALKAYKVLGVRGMARVDFF--LAEGELYLNELNTIPGFTP 294
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-43
Identities = 81/379 (21%), Positives = 132/379 (34%), Gaps = 81/379 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S R VL ++ + +
Sbjct: 15 KVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----------------- 57
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
L +L F +HG +GE+G IQ L+ Y + + G+G
Sbjct: 58 ----LSALK-------------DEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVL 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
DK+ L + G T P + + + ++ + KL + VKP
Sbjct: 101 GSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATD--IVAKLGL---PLFVKPAS 155
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+ V D+L A D V+VE +EGG E+TA + +
Sbjct: 156 EGSSVAVLKVKTA-DALPAALSEAAT-HDKIVIVEKSIEGGGEYTACIAG--------DL 205
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIREGASL 376
L + + ++Y KY+ TQ Y P P ++ A
Sbjct: 206 DL----------PLIKIVPAGEFYDYHAKYVANDTQ---YLIPCGLPAEQETELKRIARR 252
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F LG D+ R D F+ + G F ++N GM S +
Sbjct: 253 AFDVLGCTDWGRAD--FMLDAA---------------GNAYFLEVNTAPGMTDHSLPPKA 295
Query: 437 ASKVGFSHSNILRTIIGHA 455
A +G +S ++ ++
Sbjct: 296 ARSIGIGYSELVVKVLSLT 314
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 1e-35
Identities = 70/297 (23%), Positives = 103/297 (34%), Gaps = 65/297 (21%)
Query: 625 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 684
L E F A+HGG GE+G +Q L+ G+ YTG GV+ S +DK T L
Sbjct: 56 RPLSALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLV- 114
Query: 685 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
GV T + + D DI +L L VKPA +G S V ++
Sbjct: 115 --WQQTGVPTPPFETVMRGDDYAARATDIVAKLGLP-----LFVKPASEGSSVAVLKVKT 167
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
A+ L AL E H +++ E +E
Sbjct: 168 ADAL---PAALSEAA----------THD--------KIVIV-EKSIE------------- 192
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
E T + G +P + + +G+ K+ L P
Sbjct: 193 -GGG----------EYTACIAGD-----LDLPLIKIVPAGEFYDYHAKYVANDTQYLIPC 236
Query: 865 PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ E + +RI A + L + R D ++ G +EVNT PGMT
Sbjct: 237 G---LPAEQETEL-KRIARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTD 288
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-41
Identities = 82/380 (21%), Positives = 138/380 (36%), Gaps = 81/380 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS +VL ++ +
Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD----------------- 46
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ L + VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 47 ----VTQLK-------------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF-VTNKLDPNSGKVVVKPT 257
A + DK + L G P L +E + + L V+VKP+
Sbjct: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL---PVIVKPS 146
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
R GSS+G++ ++L+ A + + D+ V++E +L G EFT +L
Sbjct: 147 REGSSVGMSKVVAE-NALQDALRLAFQ-HDEEVLIEKWLSGP-EFTVAILG--------E 195
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIREGAS 375
+L S+ ++ ++Y K+L TQ Y P +++
Sbjct: 196 EIL----------PSIRIQPSGTFYDYEAKFLSDETQ---YFCPAGLEASQEANLQALVL 242
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
+ LG + RID + G + N GM S +
Sbjct: 243 KAWTTLGCKGWGRID--VM---------------LDSDGQFYLLEANTSPGMTSHSLVPM 285
Query: 436 QASKVGFSHSNILRTIIGHA 455
A + G S S ++ I+ A
Sbjct: 286 AARQAGMSFSQLVVRILELA 305
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 6e-34
Identities = 78/300 (26%), Positives = 116/300 (38%), Gaps = 69/300 (23%)
Query: 625 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 684
+ +L VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L
Sbjct: 45 VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLL- 103
Query: 685 NHLADLGVLT---INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
G+ + E L + L + VKP+R+G S G+++
Sbjct: 104 --WQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG-----LPVIVKPSREGSSVGMSK 156
Query: 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
+ L AL H E+LI E ++
Sbjct: 157 VVAENALQ---DALRLAF----------QHD--------EEVLI-EKWLS---------- 184
Query: 802 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861
G E TV ++G+ ++PS+ ++ SG E KF
Sbjct: 185 -----------G----PEFTVAILGE-----EILPSIRIQPSGTFYDYEAKFLSDETQYF 224
Query: 862 TPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
P + Q + L A L +G+ RID ++ +G+ ++E NT PGMT
Sbjct: 225 CPAG---LEASQEANL-QALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTS 279
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-41
Identities = 76/381 (19%), Positives = 136/381 (35%), Gaps = 83/381 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+R+G+I GG S+E+ +S+ + ++ ++ I
Sbjct: 4 MRIGVIMGGVSSEKQVSIMTGNEMIANLD-----------KNKYEIVPI----------- 41
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ K++ + + A ++D +HG++GEDG +Q LE +P+ G+
Sbjct: 42 TLNEKMDLIEK------------AKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNM 89
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + + +G T L E ++LD +VVKP
Sbjct: 90 LSSGICMDKNISKKILRYEGIETPDWIELTKMED--------LNFDELDKLGFPLVVKPN 141
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+GV + Y D L + E D VV+E +++G E T + D
Sbjct: 142 SGGSSVGVKIVYDK-DELISMLETVFE-WDSEVVIEKYIKGE-EITCSIFD--------G 190
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
L + +R F+Y KY P + + + +
Sbjct: 191 KQL----------PIISIRHAAEFFDYNAKY--DDASTIEEVIELPAELKERVNKASLAC 238
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
++ L +AR+D + G ++N + GM Q S L + A
Sbjct: 239 YKALKCSVYARVD----------MMVKD--------GIPYVMEVNTLPGMTQASLLPKSA 280
Query: 438 SKVGFSHSNILRTIIGHACSR 458
G +S +L II +
Sbjct: 281 DAAGIHYSKLLDMIIETSLRV 301
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-34
Identities = 65/312 (20%), Positives = 115/312 (36%), Gaps = 79/312 (25%)
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
+ + + ++ +A+HG GEDGT+Q LE+ G+PY+G ++
Sbjct: 39 VPITLNE--------KMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNML 90
Query: 670 ASKTCMDKVATSLALNHLADLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728
+S CMDK + L G+ T + ++ + EDL D +L L V
Sbjct: 91 SSGICMDKNISKKI---LRYEGIETPDWIELTKMEDL----NFDELDKLGFP-----LVV 138
Query: 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788
KP G S GV + ++L LE E++I E
Sbjct: 139 KPNSGGSSVGVKIVYDKDELI---SMLETVF----------EWD--------SEVVI-EK 176
Query: 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 848
++ KG EIT + +P ++++ + +
Sbjct: 177 YI---------------------KG----EEITCSIFDG-----KQLPIISIRHAAEFFD 206
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
K+ + I + E ++ + AL+ ++R+D V +G
Sbjct: 207 YNAKYDDASTIEE---VIEL-PAELKERVNKASLACYKALKCSVYARVDMM--VKDGIPY 260
Query: 909 IIEVNTVPGMTP 920
++EVNT+PGMT
Sbjct: 261 VMEVNTLPGMTQ 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-10
Identities = 87/573 (15%), Positives = 160/573 (27%), Gaps = 199/573 (34%)
Query: 501 DTSERQVSLMSGTNVWLNLQAF------NDIEVTPCLLASSIDCSSGMDANITDPDSSSR 554
+T E Q + + AF D++ P + S + D I D+ S
Sbjct: 10 ETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHIIMSKDAVSG 63
Query: 555 V---VWSL---PYSLVLRHTTE------EVLAACI--EAIEP--DRAAFTSHLRNQVVND 598
W+L +V + E + L + I E +P + R+++ ND
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYND 122
Query: 599 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 658
+ K++ + + + E + + + G +G
Sbjct: 123 -NQVFAKYN----------VSRLQPYLKLRQALLELRPAKNVLIDGVLG----------- 160
Query: 659 EGVPYTGPGVMASKTCMDKV------------------ATSLALNHLADLGV-------- 692
+G +A C+ + L L L
Sbjct: 161 -----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 693 ---------LTINKDVRRKEDLLKTP------IV--DIWHELTSK---LQCKTLCVKPAR 732
L I+ LLK+ +V ++ + L CK L R
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TR 273
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM------IEMPNP--PPEIL 784
V A T +L+ + + ++ P E+L
Sbjct: 274 F---KQVTDFLSAA--TTTHISLDH-----HSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITV----GVIGKCGSMHSLMPSVTV 840
P + ++S W W + +I S++ L P+
Sbjct: 324 TTNPRR----LSIIAESIRDGLAT--WD---NWKHVNCDKLTTIIES--SLNVLEPA-EY 371
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
++ D LS+ F I P ++S D K + ++ N +L +S V
Sbjct: 372 RKMFDRLSV---FPPSAHI-----PTILLSLIWFDVIKSDVMVVVN--KLHKYS----LV 417
Query: 901 NVDNGEVLIIEVNTVPGM-------TPSTVLIHQALSEQ-------------PP---MYP 937
E I ++P + + +H+++ + PP Y
Sbjct: 418 EKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 938 HQF----------------FRKV-LDLGSERFL 953
+ FR V LD RFL
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDF---RFL 503
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 3e-07
Identities = 104/716 (14%), Positives = 207/716 (28%), Gaps = 226/716 (31%)
Query: 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDK--YDASLE 212
E EH DI+ F ++ ++V + + K D +
Sbjct: 10 ETGEHQYQYKDIL-SVFEDAFVDNFDCKDVQD------------MPKSILSKEEIDHIIM 56
Query: 213 MS---KQGFITVPSFLLQGSE-----VNESELSNW-FVTNKL-----DP----------- 247
+ L + E V E N+ F+ + + P
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 248 ----NSGKVVVKP--TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
N +V K +R + + A + L+ AK ++++G+ GS
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-----------LGSG 162
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV------DVREKDAI------FNYRRKYL 349
T + LD V L +V+ + + + + + Y+
Sbjct: 163 KTWVALD----------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR----IDGWFLPSSTHVFSSSE 405
T + + + + I+SI+ L + + + +V ++
Sbjct: 213 WTSRSDHSSNIKLR---IHSIQAELRRLLKSK---PYENCLLVLL--------NVQNAKA 258
Query: 406 TKY---GSTEWGTILFT--DINLIS--GMEQTSFLFQQASKVGFSHS---NILRTIIGHA 455
IL T + T+ + + + ++L +
Sbjct: 259 WNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 456 CSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 515
P + P L+ I S+ G
Sbjct: 315 PQDLPREV-----LTTNP---------RRLS----------IIAE-------SIRDGLAT 343
Query: 516 WLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSL---PYSLVLRHTTEEV 572
W N + N ++T ++ SS++ +P ++ L P S H +
Sbjct: 344 WDNWKHVNCDKLTT-IIESSLNV--------LEPAEYRKMFDRLSVFPPSA---HIPTIL 391
Query: 573 LAACI---EAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIK 629
L + + I+ D + L LVE K S + I EL K
Sbjct: 392 L--SLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPSIYLEL----------K 436
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLA 688
+ EN+ A+H +S+++ +P T +D+ + + +HL
Sbjct: 437 VKLENEY----ALH---------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLK 482
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDI-WHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
N + + L + +D + L+ K A + + + L +
Sbjct: 483 -------NIEHPERMTLFRMVFLDFRF------LEQKIRHDSTAWNASGSILNTL---QQ 526
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
L Y I N + ++ IL F P +E + L S+ T+
Sbjct: 527 LKFYKP-------YICDND-PKYERLVN------AILDFLPKIEEN--LICSKYTD 566
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 17/151 (11%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
V + I G E + V + + AC FDKY +QG
Sbjct: 72 GVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHAR 131
Query: 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282
++ S V VKP +SI V V + +
Sbjct: 132 TYATMASFEEALAAGEV---------QLPVFVKPRNGSASIEVRRVETVEEVEQLFSK-- 180
Query: 283 LEGIDDRVVVELFLEGGSEFTA-IVLDVGSG 312
+ ++V+ L G E +D+ SG
Sbjct: 181 ----NTDLIVQELLV-GQELGVDAYVDLISG 206
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 44/353 (12%), Positives = 84/353 (23%), Gaps = 99/353 (28%)
Query: 610 TGFDIADEL---PMRHS---INEWIKLAKENQATVFIAVHGG-IGEDGTLQSLLEAEGVP 662
+ +AD+ P I+ + L ++ T + + +G +A GV
Sbjct: 41 SALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVT 100
Query: 663 YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ 722
A + C DK + G+ ++
Sbjct: 101 VIVSPYAACELCFDKYTMY---EYCLRQGIAHARTYATMASFEEALAAGEVQL------- 150
Query: 723 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782
+ VKP S V R+ E++ +
Sbjct: 151 --PVFVKPRNGSASIEVRRVETVEEVEQLFSKNTD------------------------- 183
Query: 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 842
LI + + E+ V
Sbjct: 184 -LIVQELLVGQ-------------------------ELGVDAY-------------VDLI 204
Query: 843 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 902
SG + S+ K + T S++ + + + + + L G D F
Sbjct: 205 SGKVTSIFIKEKLTMRAGETDKSRSVLRDDVFELVEH----VLDGSGLVGPLDFDLFDV- 259
Query: 903 DNGEVLIIEVNT-VPGMTPSTV---------LIHQALSEQPPMYPHQFFRKVL 945
G + + E+N G P L + E Q+ +
Sbjct: 260 -AGTLYLSEINPRFGGGYPHAYECGVNFPAQLYRNLMHEINVPQIGQYLDDIY 311
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 49/328 (14%), Positives = 92/328 (28%), Gaps = 91/328 (27%)
Query: 610 TGFDIADEL---PMRHSINEWIKLAKENQATVFIAVHGGIGEDG----------TLQSLL 656
F+ D + H+ E + + + V G D +
Sbjct: 68 ADFEHPDSIYWAHEDHNKPEEEVVEQ------IVKVAEMFGADAITTNNELFIAPMAKAC 121
Query: 657 EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI-NKDVRRKEDLLKT------P 709
E G+ G GV A++ DK A GV +I NK V ED P
Sbjct: 122 ERLGLR--GAGVQAAENARDKNKMRDAF---NKAGVKSIKNKRVTTLEDFRAALEEIGTP 176
Query: 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 769
++ +KP S GV + E + + + +
Sbjct: 177 LI----------------LKPTYLASSIGVTLITDTETAEDEFNRVND---------YLK 211
Query: 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN---ADRLMWKGNSRWVEITVGVIG 826
+ + + + E F++ + + + + +M G + I
Sbjct: 212 SINVPKAVTFEAPFIA-EEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHD---- 266
Query: 827 KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN 886
+ T E+ I P+ + EA K + +
Sbjct: 267 -----KTPQIGFT--ETSHI-----------------TPSI-LDEEAKKKIVEAAKKANE 301
Query: 887 ALQLE-GFSRIDAFVNVDNGEVLIIEVN 913
L L+ + + + + N E +IE
Sbjct: 302 GLGLQNCATHTEIKL-MKNREPGLIESA 328
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 31/165 (18%)
Query: 171 IHGRFGEDGGI----------QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
+ FG D + E+ + G G +A A DK +K G +
Sbjct: 97 VAEMFGADAITTNNELFIAPMAKACERLGLR--GAGVQAAENARDKNKMRDAFNKAGVKS 154
Query: 221 VPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---------- 270
+ + + + L+ +++KPT SSIGVT+
Sbjct: 155 IKNKRVT----TLEDFRAA-----LEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNR 205
Query: 271 VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
V D LK + + E FL+G
Sbjct: 206 VNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISI 250
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 28/236 (11%), Positives = 55/236 (23%), Gaps = 62/236 (26%)
Query: 83 ICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK 142
G E ++ Y I + P D
Sbjct: 10 ATCGERIEDST-AVEGLAMFKSAFDG--FKNYYEITGFVRPEF----SCLFTLPVDSMDS 62
Query: 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
+E + D + + E +G+ SRA
Sbjct: 63 MEKYLE--------------KSDAFLIIAPEDDFLLYTLTKKAE-KYCENLGSSSRAIAV 107
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS 262
DK++ ++ + + S P K ++KP A +
Sbjct: 108 TSDKWELYKKLRGEVQVPQTSL---------------------RPLDCKFIIKPRTACAG 146
Query: 263 IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
G+ + + D + + F+E G + + G D +
Sbjct: 147 EGIG---------------FSDEVPDGHIAQEFIE-GINLSVSLAV---GEDVKCL 183
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 12/131 (9%)
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
+ + +K N+ G A DKY K T F+++ NE+EL N
Sbjct: 86 SLARICDKENLV--GLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVR----NENELKNA 139
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299
KL P V+VK T S G+ +A +++ + D +VE F+E G
Sbjct: 140 LENLKL-P----VIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE-G 193
Query: 300 SEFTAIVLDVG 310
EF A
Sbjct: 194 YEFGAQAFVYK 204
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 44/315 (13%), Positives = 82/315 (26%), Gaps = 92/315 (29%)
Query: 610 TGFDIADELPMRHSINEW---IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGP 666
++ADE+ I+ + K+ G +L + + E + G
Sbjct: 44 PCLNLADEI-SYMDISNPDEVEQKVKDLNLDGAATCCLDTGIV-SLARICDKENLV--GL 99
Query: 667 GVMASKTCMDKVATSLALNHLADLGVLTIN-KDVRRKEDLLKT------PIVDIWHELTS 719
A+ C DK V T VR + +L P++
Sbjct: 100 NEEAAIMCGDKYKMK---EAFKKYNVNTARHFVVRNENELKNALENLKLPVI-------- 148
Query: 720 KLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNP 779
VK S G+ E+ + E + + ++
Sbjct: 149 --------VKATDLQGSKGIYIAKKEEEA---IDGFNETM------NLTKRD-------- 183
Query: 780 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT 839
++ E F+E E + + L
Sbjct: 184 --YCIV-EEFIEGYEFGAQAFVYKNDV---------------------------LFVMPH 213
Query: 840 VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE-GFSRIDA 898
E+ G P + + ++K K ++ AL L +D
Sbjct: 214 GDETY-----MSHTAVPVGHY---VPLDV-KDDIIEKTKTEVKKAIKALGLNNCAVNVDM 264
Query: 899 FVNVDNGEVLIIEVN 913
+ + EV IIE+
Sbjct: 265 I--LKDNEVYIIELT 277
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 100.0 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 100.0 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 100.0 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 100.0 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 100.0 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 100.0 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 100.0 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 100.0 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 100.0 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 100.0 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 100.0 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 100.0 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 100.0 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 100.0 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 100.0 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 100.0 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 100.0 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 100.0 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 100.0 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 100.0 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 100.0 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 100.0 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 100.0 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 100.0 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 100.0 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 100.0 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 100.0 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 100.0 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 100.0 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 100.0 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 100.0 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 100.0 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 99.98 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 99.97 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 99.96 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 99.96 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 99.96 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 99.96 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 99.96 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.96 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 99.96 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 99.95 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 99.95 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 99.95 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 99.95 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 99.95 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 99.95 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 99.95 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.95 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.95 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 99.95 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 99.95 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 99.95 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 99.95 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 99.95 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 99.95 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.94 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.94 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 99.94 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.94 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 99.94 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 99.94 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 99.94 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 99.94 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.93 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 99.93 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.93 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 99.93 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 99.93 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 99.93 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 99.93 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.92 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 99.92 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 99.92 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 99.92 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 99.92 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 99.91 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.91 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.91 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.91 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 99.91 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 99.91 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 99.91 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 99.91 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 99.91 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 99.9 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 99.9 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 99.9 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 99.9 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.9 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.9 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 99.9 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.9 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 99.9 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.89 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 99.89 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.89 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 99.89 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 99.89 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.89 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 99.89 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 99.89 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 99.89 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 99.88 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 99.88 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.88 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 99.87 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.86 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 99.86 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 99.86 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 99.85 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 99.85 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 99.85 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 99.85 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 99.84 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.83 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.81 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.76 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 99.76 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.71 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.71 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.69 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 99.69 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.68 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.66 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.65 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.65 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 99.62 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.61 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.6 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 99.58 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 99.58 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 99.4 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.36 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 99.35 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.34 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 98.91 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 98.87 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 98.66 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 98.59 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 98.46 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 98.16 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 97.96 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 97.87 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 93.84 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 92.14 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 85.62 |
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-61 Score=545.57 Aligned_cols=341 Identities=26% Similarity=0.357 Sum_probs=276.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccc--ccccCCCCCcccccccccc--c--c
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA--QVYSNTPADFDFKLESLAQ--G--F 150 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~--~ 150 (953)
++||+|||||.|+||||||.||++|+++|++.||+|++|+||++|+|+..... .+..+.......+..+... . .
T Consensus 3 kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T 4fu0_A 3 NKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVVSQNRSV 82 (357)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSCTHHHHTTCGGGCGGGEEEEEECCCTTT
T ss_pred CCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCCHHHhhcCcchhhhhccccccccccccc
Confidence 46999999999999999999999999999999999999999999999875432 2222111110111111100 0 0
Q ss_pred C-cchhHHH-hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 151 G-SLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 151 ~-~~~~~~~-~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
. ....... ....++|+|||++||.+||||.+|++||.+||||+||++.++++|+||..+|++|+++|||||++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~ 162 (357)
T 4fu0_A 83 KGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKR 162 (357)
T ss_dssp CEEEEC----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEG
T ss_pred cchhhhhhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecC
Confidence 0 0000000 1123699999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.+.. ..+.++.+ .++||+||||+++|||+||++|++.+|+.+....++ .+++.+|||+||+| +|++|.|++
T Consensus 163 ~~~~-~~~~~~~~-----~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~--~~~~~vlvE~~i~G-~e~~v~vl~ 233 (357)
T 4fu0_A 163 FNEE-AAMKEIEA-----NLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAF--EHDTEVIVEETING-FEVGCAVLG 233 (357)
T ss_dssp GGHH-HHHHHHHH-----HCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHT--TTCSEEEEEECCCS-EEEEEEEEE
T ss_pred CChH-HHHHHHHH-----hcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHh--ccCCeEEEEEecCC-EEEEEEEEe
Confidence 4421 12223222 378999999999999999999999999887766554 47889999999997 999999996
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
++ ...+.++.++.. ...+|+|..||..+. +.+.+|+++++++.++++++|.+++++|||+|++|
T Consensus 234 ~~-----~~~~~~v~~~~~----------~~~~~d~~~k~~~~~-~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~ 297 (357)
T 4fu0_A 234 ID-----ELIVGRVDEIEL----------SSGFFDYTEKYTLKS-SKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 (357)
T ss_dssp SS-----SEEECCCEEEEE----------CHHHHTSCSBCSSCC-EEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cC-----CceEEEEEEEEc----------ccccccccccccCCC-ceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEE
Confidence 32 244555665543 446999999998765 77889999999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
|||++ +++|++|||||||+||||++|+||++|+++|++|++|+++||+.|++|-
T Consensus 298 VDf~~-----------------~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~aler~ 351 (357)
T 4fu0_A 298 VDMFY-----------------TPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVELE 351 (357)
T ss_dssp EEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTTC---
T ss_pred EEEEE-----------------eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHHhccc
Confidence 99987 6789999999999999999999999999999999999999999999984
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=540.08 Aligned_cols=345 Identities=25% Similarity=0.376 Sum_probs=266.5
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccccc-ccCCCC-------Cccccccc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQV-YSNTPA-------DFDFKLES 145 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~-~~~~~~-------~~~~~~~~ 145 (953)
|.+||||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+.... ...... ...+.+.+
T Consensus 1 ~~~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (372)
T 3tqt_A 1 MAEKLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDHLVKEGSARPITIAF 80 (372)
T ss_dssp -CCSEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECCHHHHHHSCHHHHHHHTCSEEEEECT
T ss_pred CCCCCEEEEEeccCCCccHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEeccchhhhhccccccccccccccceeecc
Confidence 5677899999999999999999999999999999999999999999999986443211 000000 00000100
Q ss_pred c--ccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCe
Q 002207 146 L--AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223 (953)
Q Consensus 146 ~--~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~ 223 (953)
. ...+..... .....++|+|||++||.+||||++|++||.+||||+|+++.++++||||..+|++|+++|||+|++
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~ 158 (372)
T 3tqt_A 81 GDAAKPWQSLNG--DGRRYSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDW 158 (372)
T ss_dssp TCSSCCEEEC------CEECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCC
T ss_pred cccccceeeccc--cccccCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCE
Confidence 0 000000000 001137999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccchhhhhhhhhhcCCCCCCCc-EEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 224 FLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~P-vvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
..+...+.....+..+.+ .++|| +||||+++|||+||++|++.+|+.+++..++ .++..+|||+||+| +|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~-----~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~--~~~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 159 HTLSPRDATEGVYQRLLD-----RWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRG-REI 230 (372)
T ss_dssp EEECTTSCCTTHHHHHHH-----HC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHT--TTCSCEEEEECCCS-EEE
T ss_pred EEEechhhhhhHHHHHHH-----hcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHH--hcCCCEEEECCCCC-EEE
Confidence 999876532111222222 36889 9999999999999999999999887766554 47889999999997 999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+|.|++++ .+.+++++|+.. ..+||||++||..+..+.+.+|+++++++.++++++|.+++++||
T Consensus 231 ~v~vl~~~-----~~~~~~~~ei~~----------~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 295 (372)
T 3tqt_A 231 ECAVLGNG-----APKASLPGEIIP----------HHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVH 295 (372)
T ss_dssp EEEEEESS-----SCEECCCEEEEC----------C---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCC-----CceEeeeEEEec----------CCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999632 356777887753 456999999998654367889999999999999999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|+|++||||++ +++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++|+.
T Consensus 296 ~~G~~rvDf~~-----------------~~dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r~~ 356 (372)
T 3tqt_A 296 CSGMARVDFFV-----------------TPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDRHQ 356 (372)
T ss_dssp CCEEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEE-----------------eCCCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 99999999987 56799999999999999999999999999999999999999999999864
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=528.52 Aligned_cols=337 Identities=27% Similarity=0.380 Sum_probs=256.6
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccc--ccc-ccccccCc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF--KLE-SLAQGFGS 152 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 152 (953)
++|||+|||||.|+||||||.||++|+++|++.||+|++++++++|.|+..............+.. ... ... ..
T Consensus 36 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 112 (383)
T 3k3p_A 36 SKETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQK--IK- 112 (383)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGE--EC-
T ss_pred cCCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccc--cc-
Confidence 356999999999999999999999999999999999999999999999864322110000000000 000 000 00
Q ss_pred chhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCC-CCCCCeEEecCCcc
Q 002207 153 LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQG-FITVPSFLLQGSEV 231 (953)
Q Consensus 153 ~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G-iptp~~~~~~~~~~ 231 (953)
...+ ..++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++| ||+|+++.+...+.
T Consensus 113 ~~~~----~~~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~ 188 (383)
T 3k3p_A 113 PSDI----YEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEP 188 (383)
T ss_dssp GGGG----CCTTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTSC
T ss_pred cccc----ccCCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCccc
Confidence 0001 137999999999999999999999999999999999999999999999999999999 99999999987542
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
....+.++.+ .++||+||||++++||+||++|++.+|+.+++..++. ++..+|||+||+| +|++|.|+++
T Consensus 189 ~~~~~~~~~~-----~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~--~~~~vlVEe~I~G-~E~~v~vl~d-- 258 (383)
T 3k3p_A 189 LESKLAEVEE-----KLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALK--YDSRVLIEQGVDA-REIEVGILGN-- 258 (383)
T ss_dssp HHHHHHHHHH-----HCCSSEEEEECC------CEEESSHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEEEES--
T ss_pred hhHHHHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--CCCeEEEEcCCCC-eEEEEEEEeC--
Confidence 2122333332 3678999999999999999999999998877666553 6789999999997 9999999963
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+.+.+++++|+.. ...||||++||..+. +.+.+|+.+++++.+++++.|.+++++|||+|++||||
T Consensus 259 ---~~~~~~~~~ei~~----------~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf 324 (383)
T 3k3p_A 259 ---TDVKTTLPGEIVK----------DVAFYDYEAKYIDNK-ITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDF 324 (383)
T ss_dssp ---SSCEECCCEEEC----------------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ---CCeeEEeeEEEec----------CCCccchhhcccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEE
Confidence 2356677777642 457999999998654 67889999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
++ +++|++||+||||+||||++|+||++++++|++|.+|+.++|+.|++|++
T Consensus 325 ~~-----------------~~~g~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r~~ 376 (383)
T 3k3p_A 325 FL-----------------TEDGKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEMFD 376 (383)
T ss_dssp EE-----------------CTTCCEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EE-----------------ECCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 87 57899999999999999999999999999999999999999999999864
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=528.00 Aligned_cols=347 Identities=25% Similarity=0.305 Sum_probs=269.9
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccc--cccCC---CCC-----cccccc-
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNT---PAD-----FDFKLE- 144 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~--~~~~~---~~~-----~~~~~~- 144 (953)
+|+||+|||||.|+|||||+.||++|+++|++.+|+|++++|+++|.|+..+... +.... +.. ..+.+.
T Consensus 9 ~~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
T 3lwb_A 9 RRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTELALPA 88 (373)
T ss_dssp TCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC--------------------------
T ss_pred CCcEEEEEecCCCCChhhHHHHHHHHHHHhhhcCceEEEEEecCCCCeEecCchhhhhhcccccccccccccccceEeec
Confidence 5679999999999999999999999999999999999999999999999754311 10000 000 000010
Q ss_pred -ccccccCcchhHH-HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCC
Q 002207 145 -SLAQGFGSLSEFA-EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222 (953)
Q Consensus 145 -~~~~~~~~~~~~~-~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~ 222 (953)
+....+....... .....++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++|||+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~ 168 (373)
T 3lwb_A 89 DPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGA 168 (373)
T ss_dssp --------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCC
T ss_pred cccccceeeccccccccccCCccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCC
Confidence 0000000000000 00012699999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+..+...+.... . ... ..++||+||||++++||+||++|++.+|+.+++..++ .++..+|||+||+| +|+
T Consensus 169 ~~~~~~~~~~~~-~-~~~-----~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~--~~~~~vlVEe~I~G-~E~ 238 (373)
T 3lwb_A 169 YAVLRPPRSTLH-R-QEC-----ERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISG-REL 238 (373)
T ss_dssp EEEECTTCCCCC-H-HHH-----HHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHH--TTCSSEEEEECCEE-EEE
T ss_pred EEEEECcccchh-H-HHH-----HhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCCEEEeCCCCC-eEE
Confidence 999987653110 0 011 1267899999999999999999999999877766654 37889999999997 999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCc----ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHH
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDA----IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~----~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~ 378 (953)
+|.|++++ ...+.+++++|+.... ... ||+|+.||..+. +.+.+|+++++++.++++++|.+++
T Consensus 239 ~v~vl~~~---~~~~~~~~~~ei~~~~--------~~~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~ 306 (373)
T 3lwb_A 239 ECGVLEMP---DGTLEASTLGEIRVAG--------VRGREDSFYDFATKYLDDA-AELDVPAKVDDQVAEAIRQLAIRAF 306 (373)
T ss_dssp EEEEEECT---TSCEEECCCEEEECCS--------TTCSEESSSCHHHHHTCTT-CEEESSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECC---CCceEEeeeeEEEccC--------CCCccccccchhhcccCCC-ceEEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999742 1223677888775320 134 999999998765 5788999999999999999999999
Q ss_pred HHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 379 ~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++|||+|++||||++ +++|. ||+||||+||||++|+||++++++|++|.+|+.+||+.|++|
T Consensus 307 ~aLg~~G~~~vDf~~-----------------~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 368 (373)
T 3lwb_A 307 AAIDCRGLARVDFFL-----------------TDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 368 (373)
T ss_dssp HHTTCCSEEEEEEEE-----------------ETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHhCCccEEEEEEEE-----------------ECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999987 56788 999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 002207 459 FPNL 462 (953)
Q Consensus 459 ~~~~ 462 (953)
+..+
T Consensus 369 ~~~~ 372 (373)
T 3lwb_A 369 GVGL 372 (373)
T ss_dssp ----
T ss_pred hhcc
Confidence 7543
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-59 Score=531.03 Aligned_cols=348 Identities=26% Similarity=0.361 Sum_probs=265.5
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccccccc--CCCC-------Ccccc
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTPA-------DFDFK 142 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~--~~~~-------~~~~~ 142 (953)
.+| ++|||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+......... .... ...+.
T Consensus 18 ~~m-~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
T 3e5n_A 18 GHM-RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVA 96 (386)
T ss_dssp ----CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEE
T ss_pred hhc-CCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhcccccccccccccccccee
Confidence 456 4689999999999999999999999999999999999999999999998754321100 0000 00010
Q ss_pred ccccccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCC
Q 002207 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222 (953)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~ 222 (953)
+.+.................++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++|||+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~ 176 (386)
T 3e5n_A 97 LLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAP 176 (386)
T ss_dssp ECTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCC
T ss_pred eccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCC
Confidence 11100000000000011234799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+..+...+....++.++.+ .++||+||||++++||+||++|++.+|+.+++..++ .++..+|||+||+| +|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~-----~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~--~~~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 177 FVCFDRHTAAHADVDTLIA-----QLGLPLFVKPANQGSSVGVSQVRTADAFAAALALAL--AYDHKVLVEAAVAG-REI 248 (386)
T ss_dssp EEEEEHHHHTTCCHHHHHH-----HHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHT--TTCSEEEEEECCCS-EEE
T ss_pred EEEEeCcccchhhHHHHHH-----hcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHH--hCCCcEEEEcCCCC-eEE
Confidence 9998764311111222222 257899999999999999999999999887776654 47889999999998 999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+|.|+++ . .+.+++++|+.. ..+||+|+.||..++.+.+.+|+.+++++.++++++|.+++++||
T Consensus 249 ~v~vl~~----~-~~~~~~~gei~~----------~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 313 (386)
T 3e5n_A 249 ECAVLGN----A-VPHASVCGEVVV----------HDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALG 313 (386)
T ss_dssp EEEEECS----S-SCEEEEEEEECC---------------------------CEESSCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeC----C-CceEEEeEEEEe----------CCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999953 2 255667777642 345999999998755467889999999999999999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|+|++||||++ +++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++|+.
T Consensus 314 ~~G~~~vDf~~-----------------~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~~r~~ 374 (386)
T 3e5n_A 314 CAGMARVDVFL-----------------CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERHT 374 (386)
T ss_dssp CCSEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEE-----------------ECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 99999999987 67889999999999999999999999999999999999999999999853
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=522.06 Aligned_cols=350 Identities=25% Similarity=0.353 Sum_probs=272.7
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|+|+||+|||||.|+||||||+||++|+++|++ .+|+|++|+|+++|.|+....... ....+.|.
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~-~gy~v~~i~i~~~g~~~~~~~~~~----~~~~~~~~---------- 65 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINT-NKFDIIPIGITRSGEWYHYTGEKE----KILNNTWF---------- 65 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTCCEEEECSCTH----HHHTTCGG----------
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhH-hCCEEEEEEEeCCCceeecCCCHH----HhhcCcch----------
Confidence 568899999999999999999999999999975 899999999999987764321100 00000000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
.+.. ...+. .+.......++. +. ..+ ......+|+|||++||+.||
T Consensus 66 -~~~~-----~~~~~------------------~~~~~~~~~~~~--~~------~~~--~~~~~~~D~vf~~l~G~~gE 111 (357)
T 4fu0_A 66 -EDSK-----NLCPV------------------VVSQNRSVKGFL--EI------ASD--KYRIIKVDLVFPVLHGKNGE 111 (357)
T ss_dssp -GCGG-----GEEEE------------------EECCCTTTCEEE--EC------------CEEEECSEEEECCCSHHHH
T ss_pred -hhhh-----ccccc------------------cccccccccchh--hh------hhh--hHhhcCCCEEEECCcCcccc
Confidence 0000 00000 000000000000 00 000 01234689999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+...+. ...++++.+++ +||+||
T Consensus 112 dg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~-----~~~~~~~~~~l-g~PvvV 182 (357)
T 4fu0_A 112 DGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKL---VSLAGISVPKSVTFKRFNE-----EAAMKEIEANL-TYPLFI 182 (357)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCBCCCEEEEEGGGH-----HHHHHHHHHHC-CSSEEE
T ss_pred CHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEeecCCCh-----HHHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876542 23355667789 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|||.||++|++.++|.. +++.++.+ ++.+|+|+||+|+
T Consensus 183 KP~~gg~s~Gv~~v~~~~el~~---~~~~a~~~-------------------~~~vlvE~~i~G~--------------- 225 (357)
T 4fu0_A 183 KPVRAGSSFGITKVIEKQELDA---AIELAFEH-------------------DTEVIVEETINGF--------------- 225 (357)
T ss_dssp EETTCSSSTTCEEESSHHHHHH---HHHHHTTT-------------------CSEEEEEECCCSE---------------
T ss_pred EECCCCCCCceEEeccHHhHHH---HHHHHhcc-------------------CCeEEEEEecCCE---------------
Confidence 9999999999999999999885 67777654 6889999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.|+++.... ..+..+......+|+|+.||..+.+...+|++ +++++.++++++|.+++++|
T Consensus 226 ----------e~~v~vl~~~~~~--~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~---l~~~~~~~i~~~A~~~~~aL 290 (357)
T 4fu0_A 226 ----------EVGCAVLGIDELI--VGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR---IDAEAEKRIQEAAVTIYKAL 290 (357)
T ss_dssp ----------EEEEEEEESSSEE--ECCCEEEEECHHHHTSCSBCSSCCEEEESSCS---CCHHHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEEEEecCCce--EEEEEEEEcccccccccccccCCCceEecCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999876433 33344455566799999999988888888887 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
||+|++|||||+++ +|++|||||||+||||++|.+|++|.++ |..| .+|+++||++|++|
T Consensus 291 g~~G~~~VDf~~~~-dg~~~vlEvNt~PG~t~~S~~p~~~~~~-G~~~-~~li~~li~~aler 350 (357)
T 4fu0_A 291 GCSGFSRVDMFYTP-SGEIVFNEVNTIPGFTSHSRYPNMMKGI-GLSF-SQMLDKLIGLYVEL 350 (357)
T ss_dssp TCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTT-TCCH-HHHHHHHHHTTC--
T ss_pred CCcceEEEEEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHh-CcCH-HHHHHHHHHHHhcc
Confidence 99999999999985 7999999999999999999888887765 4566 59999999999988
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=516.58 Aligned_cols=345 Identities=25% Similarity=0.362 Sum_probs=277.5
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccccccc--CCCCCccc-------ccccc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTPADFDF-------KLESL 146 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~--~~~~~~~~-------~~~~~ 146 (953)
++|||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+...... ..+..... .+.+.
T Consensus 2 ~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
T 3i12_A 2 AKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPG 81 (364)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEEECTT
T ss_pred CccEEEEEeccCCCCccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccceeccc
Confidence 3579999999999999999999999999999999999999999999998643321110 01111000 00000
Q ss_pred ccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe
Q 002207 147 AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226 (953)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~ 226 (953)
................++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++|||+|++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~ 161 (364)
T 3i12_A 82 KHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL 161 (364)
T ss_dssp CSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEE
T ss_pred ccccceeccccccccCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEE
Confidence 00000000000001347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEE
Q 002207 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~V 306 (953)
.+.+....++.++.+ .++||+||||++++||+||++|++.+|+.+++..++. ++..+|||+||+| +|++|.|
T Consensus 162 ~~~~~~~~~~~~~~~-----~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~--~~~~vlVEe~I~G-~E~~v~v 233 (364)
T 3i12_A 162 TRTNRHAFSFAEVES-----RLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFE--FDHKVVVEQGIKG-REIECAV 233 (364)
T ss_dssp ETTTGGGCCHHHHHH-----HHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEE
T ss_pred EccccchhhHHHHHH-----hcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHh--cCCcEEEEcCcCC-eEEEEEE
Confidence 875411111222222 2578999999999999999999999998877666553 5789999999998 9999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
++++ .+.+++++|+.. ...||+|..||..+..+.+.+|+.+++++.+++++.|.+++++|||+|+
T Consensus 234 l~~~-----~~~~~~~~ei~~----------~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~ 298 (364)
T 3i12_A 234 LGND-----NPQASTCGEIVL----------NSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGM 298 (364)
T ss_dssp EESS-----SCEEEEEEEEEC----------CTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EeCC-----CceEeeeEEEec----------CCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceE
Confidence 9632 256677777752 4569999999986554678899999999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
+||||++ +++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++|+.
T Consensus 299 ~~vD~~~-----------------~~~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li~~a~~~~~ 355 (364)
T 3i12_A 299 ARVDVFL-----------------TADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHT 355 (364)
T ss_dssp EEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-----------------ecCCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 9999986 67899999999999999999999999999999999999999999998853
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-56 Score=501.26 Aligned_cols=337 Identities=23% Similarity=0.305 Sum_probs=265.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 153 (953)
.+|||+|||||.|+||||||.||++|+++|++.||+|+++++++++.|+..................+.... ..+...
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVL 81 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEE
T ss_pred CCCEEEEEeeecCCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceec
Confidence 468999999999999999999999999999999999999999999999865432111000000000000000 000000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.. ......++|+|||++||.+||||.+|++||.+||||+|+++.++++|+||..+|++|+++|||+|++..+.+.+.
T Consensus 82 ~~-~~~~~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~-- 158 (346)
T 3se7_A 82 EQ-GKYETIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADEK-- 158 (346)
T ss_dssp ET-TEEEEEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTSC--
T ss_pred cc-ccccccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcHH--
Confidence 00 000124799999999999999999999999999999999999999999999999999999999999999877541
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
.. ...++||+||||++++||+||++|++.+|+.++...++ .++..+|||+||+| +|++|.+++++
T Consensus 159 ----~~-----~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEe~I~G-~E~~v~vl~~~--- 223 (346)
T 3se7_A 159 ----IP-----TDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAR--EYDSKVLIEEAVIG-TEIGCAVMGNG--- 223 (346)
T ss_dssp ----CC-----TTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHT--TTCSEEEEEECCCS-EEEEEEEEEET---
T ss_pred ----HH-----HHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHH--hCCCcEEEEeCcCC-EEEEEEEEecC---
Confidence 11 12478999999999999999999999999887766654 36789999999997 99999999742
Q ss_pred ccccEEecceEEEEeccCccccccCCccccc----ccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNY----RRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy----~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
+.+.++++.++.. .+.|||| +.||..+. +.+.+|+++++++.+++++.|.+++++|||+|++||
T Consensus 224 -~~~~~~~~~e~~~----------~~~~~d~~q~~~~ky~~~~-~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~v 291 (346)
T 3se7_A 224 -PELITGEVDQITL----------SHGFFKIHQESTPESGSDN-SAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRV 291 (346)
T ss_dssp -TEEEECCCEEECC----------C--------------CGGG-SCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -CCeEEEeeEEEec----------CCCCcCcccchhccccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 2345667776542 4579999 99998654 567899999999999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
||++ +++|++||+||||+||||++|+||++++++|++|.+++.+||+.|++|+
T Consensus 292 D~~~-----------------~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~~~ 344 (346)
T 3se7_A 292 DLFL-----------------TEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRLVSLALAGK 344 (346)
T ss_dssp EEEE-----------------CTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred EEEE-----------------eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 9986 5778999999999999999999999999999999999999999999885
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-56 Score=506.44 Aligned_cols=352 Identities=22% Similarity=0.287 Sum_probs=258.3
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.|+||+|||||.|+||||||.||++|+.+|+. ++|+|+||+|+++|.|...... ...|. .
T Consensus 2 ~~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~~~~~~~~~~~---------~~~~~---------~ 62 (372)
T 3tqt_A 2 AEKLHISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDHVGRWYLIDQP---------EMFLA---------H 62 (372)
T ss_dssp CCSEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEECCH---------HHHHH---------S
T ss_pred CCCCEEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECCCCCEEeccch---------hhhhc---------c
Confidence 467899999999999999999999999999975 8999999999998766532110 00000 0
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
... ...+.... ..+ .+.+..-...+. .+.+ ......+|+|||++||.+||
T Consensus 63 ~~~-----~~~~~~~~--------~~~------~l~~~~~~~~~~---------~~~~--~~~~~~~D~vf~~lhG~~gE 112 (372)
T 3tqt_A 63 SPD-----HLVKEGSA--------RPI------TIAFGDAAKPWQ---------SLNG--DGRRYSADCVFPMVHGTQGE 112 (372)
T ss_dssp CHH-----HHHHHTCS--------EEE------EECTTCSSCCEE---------EC------CEECCSEEEECCCSTTTT
T ss_pred ccc-----cccccccc--------cce------eeccccccccee---------eccc--cccccCCCEEEEcCCCCCCc
Confidence 000 00000000 000 000000000000 0000 00124689999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LC 727 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~P-lv 727 (953)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+.+.+.. ...+.++.+.+ +|| +|
T Consensus 113 dg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~----~~~~~~~~~~l-g~P~vv 184 (372)
T 3tqt_A 113 DGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTV---LRAGGIPVVDWHTLSPRDAT----EGVYQRLLDRW-GTSELF 184 (372)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCCBCCCEEECTTSCC----TTHHHHHHHHC----CEE
T ss_pred CHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHH---HHHCCcCCCCEEEEechhhh----hhHHHHHHHhc-CCCeEE
Confidence 99999999999999999999999999999999999 99999999999999875531 12244556788 699 99
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccch
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~ 807 (953)
|||+++|||.||++|++.+||.. +++.++.+ +..+|||+||+|+
T Consensus 185 VKP~~ggss~Gv~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~-------------- 228 (372)
T 3tqt_A 185 VKAVSLGSSVATLPVKTETEFTK---AVKEVFRY-------------------DDRLMVEPRIRGR-------------- 228 (372)
T ss_dssp EEESSCCSGGGEEEECSHHHHHH---HHHHHTTT-------------------CSCEEEEECCCSE--------------
T ss_pred EEECCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCCEEEECCCCCE--------------
Confidence 99999999999999999999885 67776654 6789999999997
Q ss_pred hhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC-ceeEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 002207 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIAN 886 (953)
Q Consensus 808 ~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~-~~~~~P~~~~~l~~~~~~~i~~~a~~~~~ 886 (953)
|++|+|++++. .. ..+..++....+||||++||..+. +...+|++ +++++.++++++|.++++
T Consensus 229 -----------E~~v~vl~~~~-~~-~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~ 292 (372)
T 3tqt_A 229 -----------EIECAVLGNGA-PK-ASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD---LSESVTKQIQQIAIDAFK 292 (372)
T ss_dssp -----------EEEEEEEESSS-CE-ECCCEEEECC---------------CEEESCCC---CCHHHHHHHHHHHHHHHH
T ss_pred -----------EEEEEEEeCCC-ce-EeeeEEEecCCCccchhhcccCCCceEEEeCCC---CCHHHHHHHHHHHHHHHH
Confidence 99999998753 22 345556666678999999999887 78889987 689999999999999999
Q ss_pred HcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 887 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 887 aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
+|||+|++||||+++. +|++|||||||+||||++|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 293 aLg~~G~~rvDf~~~~-dg~~~vlEINt~PG~t~~S~~p~~~~~~-G~~~-~~li~~li~~a~~r~ 355 (372)
T 3tqt_A 293 MVHCSGMARVDFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEAS-GLPC-PNLLDQLIELAIDRH 355 (372)
T ss_dssp HTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred HhCCccEEEEEEEEeC-CCcEEEEEEECCCCcCccCHHHHHHHHh-CCCH-HHHHHHHHHHHHHHh
Confidence 9999999999999985 6899999999999999999888888776 4556 599999999999885
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=543.07 Aligned_cols=631 Identities=17% Similarity=0.186 Sum_probs=419.9
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+|++||. ++|||+ ||++++++|++.||+|+.++.+++ +...... ..|. .++.+... .
T Consensus 7 ~~kIlIig~G~i~ig~a~E~d~---sg~~~~~al~~~G~~vv~v~~~~~--~~~~~~~------~ad~-~~i~p~~~--e 72 (1073)
T 1a9x_A 7 IKSILILGAGPIVIGQACEFDY---SGAQACKALREEGYRVINVNSNPA--TIMTDPE------MADA-TYIEPIHW--E 72 (1073)
T ss_dssp CCEEEEECCCSCBTTBCTHHHH---HHHHHHHHHHHHTCEEEEECSCTT--CGGGCGG------GSSE-EECSCCCH--H
T ss_pred CCEEEEECCCcccccccccccc---hHHHHHHHHHHcCCEEEEEeCCcc--cccCChh------hCcE-EEECCCCH--H
Confidence 36899999986 899998 599999999999999987754332 2111000 0110 11111100 0
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..+++ ..++|+|+|.+||..++++.+ +++|+.+|++++|+++.++.+++||..+|++|+++|+|+|++..+.
T Consensus 73 ~i~~i~~--~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~ 150 (1073)
T 1a9x_A 73 VVRKIIE--KERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAH 150 (1073)
T ss_dssp HHHHHHH--HHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEES
T ss_pred HHHHHHH--HhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEC
Confidence 0111111 248999999999988888764 4589999999999999999999999999999999999999999887
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+.+. +.++.+ .++||+||||..+++|.|+.+|++.+|+.+.+.+.+.......+|||+||+|++|+++.++
T Consensus 151 ~~~e----a~~~~~-----~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~ 221 (1073)
T 1a9x_A 151 TMEE----ALAVAA-----DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVV 221 (1073)
T ss_dssp SHHH----HHHHHH-----HHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEE
T ss_pred CHHH----HHHHHH-----HcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEE
Confidence 6442 333332 2678999999999999999999999998877766655445578999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCC-C
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLC-D 385 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G 385 (953)
++.+|+ .+.++. ++ .+++...+ .+ .+....|+. ++++..+++++.+.+++++||++ |
T Consensus 222 ~d~~g~---~v~~~~--~e--------------~~dp~~v~-~g-~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G 280 (1073)
T 1a9x_A 222 RDKNDN---CIIVCS--IE--------------NFDAMGIH-TG-DSITVAPAQTLTDKEYQIMRNASMAVLREIGVETG 280 (1073)
T ss_dssp ECTTCC---EEEEEE--EE--------------ESSCTTSC-GG-GSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSE
T ss_pred EeCCCC---EEEEEE--Ee--------------cccCCccc-cC-cEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccC
Confidence 864432 333222 11 12332222 12 245667985 99999999999999999999999 9
Q ss_pred eeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH------------
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII------------ 452 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li------------ 452 (953)
+++|||++ ++ +|++||+||||+++ .+|. ...+++|+++.++..++.
T Consensus 281 ~~~vdf~~-----------------~~~~g~~~viEiNpR~~--~ss~--l~~~atG~~l~~~~~~~a~G~~l~~~~~~i 339 (1073)
T 1a9x_A 281 GSNVQFAV-----------------NPKNGRLIVIEMNPRVS--RSSA--LASKATGFPIAKVAAKLAVGYTLDELMNDI 339 (1073)
T ss_dssp EEEEEEEE-----------------CTTTCCEEEEEEESSCC--HHHH--HHHHHHSCCHHHHHHHHHTTCCGGGSBCTT
T ss_pred ceEEEEEE-----------------ECCCCCEEEEEecCCCC--ccHH--HHHHHhCCCHHHHHHHHHcCCChHHhhccc
Confidence 99999987 44 68999999998776 3332 233456776544433221
Q ss_pred -HH-HhhhC-CCC--------CCCCC--------c-------c--eec--------------------------------
Q 002207 453 -GH-ACSRF-PNL--------ASYNS--------V-------S--SHL-------------------------------- 472 (953)
Q Consensus 453 -~~-a~~r~-~~~--------~~~~~--------~-------~--~~~-------------------------------- 472 (953)
.. ....| ++. ++.+. . + +.+
T Consensus 340 ~~~~~~a~f~p~~~~v~~~ip~~~~~~~~~~~~~~~~~~~~~G~v~~~g~~~~ea~~ka~~~l~~~~~g~~~~~~~~~~~ 419 (1073)
T 1a9x_A 340 TGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPE 419 (1073)
T ss_dssp TTTCSBSCSCCBCSSEEEEEEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHHHHHHSSSSCSSSCCSSCTTCTT
T ss_pred cCccCHHHcccCCCcEEEEcccccccccCCCCcccCCCccCcEEEEEEcCCHHHHHHHHHHhhcccccCcCccccccccc
Confidence 00 00001 000 00000 0 0 000
Q ss_pred -----------------------------------------------------ccccc-----cCCCc------------
Q 002207 473 -----------------------------------------------------PGRSS-----GSKPT------------ 482 (953)
Q Consensus 473 -----------------------------------------------------~~~~~-----~~~~~------------ 482 (953)
++++. .+..+
T Consensus 420 ~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~gf~d 499 (1073)
T 1a9x_A 420 ALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFAD 499 (1073)
T ss_dssp HHHHHHHHHHTCBTTHHHHHHHHHHTTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHTTCCH
T ss_pred cHHHHHHHHhCCCccHHHHHHHHHHcCCCHHHHHHhhccCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHcCCCH
Confidence 00000 00000
Q ss_pred --------------------------------------------------cccccC-CCceEEEEecCCCc-----ccce
Q 002207 483 --------------------------------------------------EALNKR-EGIREVFVIFGGDT-----SERQ 506 (953)
Q Consensus 483 --------------------------------------------------~~~~~~-~~~~~v~vl~GG~s-----~E~~ 506 (953)
++.... ..++||+|+.||.+ .|+|
T Consensus 500 ~~ia~~~~~~~~~~~~~r~~~~~~~~~k~vd~~a~e~~~~t~y~y~~y~~~~~~~~~~~~~kVlVlG~G~~riG~~~Efd 579 (1073)
T 1a9x_A 500 ARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFD 579 (1073)
T ss_dssp HHHHHHTTSCHHHHHHHHHHTTCCCEEEECCSBTTSSCCCCEEEEEESCSCCCCCCCSSSCEEEEECCCSCBTTBCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCceEEEeCCccccCcCCCceEEEEECCCccccccccCcEEEEecCCccccccccccc
Confidence 000000 24678999998874 7888
Q ss_pred eccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCccccc
Q 002207 507 VSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAA 586 (953)
Q Consensus 507 vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (953)
.|+..+ ..+|++ .+|+++.+..+++ +.+.+ ....+..+..
T Consensus 580 ~~~~~~---~~al~~-~G~~vi~v~~np~--~~s~~-------~~~ad~~~~~--------------------------- 619 (1073)
T 1a9x_A 580 YCCVHA---SLALRE-DGYETIMVNCNPE--TVSTD-------YDTSDRLYFE--------------------------- 619 (1073)
T ss_dssp HHHHHH---HHHHHH-TTCEEEEECCCTT--SSTTS-------TTSSSEEECC---------------------------
T ss_pred hhHHHH---HHHHHh-cCCEEEEEecCCc--ccccc-------cccccEEEec---------------------------
Confidence 887766 467764 6888876533221 11100 0000111100
Q ss_pred cccccccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeC
Q 002207 587 FTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG 665 (953)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G 665 (953)
+.+.+++.+. .++.+|.|++.++|.... .++..|+.+|+|++|
T Consensus 620 ----------------------------------p~~~e~v~~i~~~e~~d~Vi~~~g~~~~~--~la~~Le~~Gi~i~G 663 (1073)
T 1a9x_A 620 ----------------------------------PVTLEDVLEIVRIEKPKGVIVQYGGQTPL--KLARALEAAGVPVIG 663 (1073)
T ss_dssp ----------------------------------CCSHHHHHHHHHHHCCSEEECSSSTHHHH--TTHHHHHHTTCCBCS
T ss_pred ----------------------------------cchhhhhhhhhhhcCcceEEeecCCchHH--HHHHHHHHCCCCeeC
Confidence 0111222222 235679999887664333 578899999999999
Q ss_pred CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc
Q 002207 666 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745 (953)
Q Consensus 666 ~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~ 745 (953)
+++.++.+|+||..++++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.+++|.||.+|++.
T Consensus 664 ~~~~ai~~~~DK~~~~~l---l~~~GIp~P~~~~~~s~e--------ea~~~~~~i-g~PvvVKP~~~~gG~Gv~iv~~~ 731 (1073)
T 1a9x_A 664 TSPDAIDRAEDRERFQHA---VERLKLKQPANATVTAIE--------MAVEKAKEI-GYPLVVRASYVLGGRAMEIVYDE 731 (1073)
T ss_dssp SCHHHHHHHHSHHHHHHH---HHHHTCCCCCEEECCSHH--------HHHHHHHHH-CSSEEEEC-------CEEEECSH
T ss_pred CCHHHHHHhhCHHHHHHH---HHHcCcCCCCceEECCHH--------HHHHHHHHc-CCCEEEEECCCCCCCCeEEECCH
Confidence 999999999999999999 899999999998876532 234556678 69999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEE
Q 002207 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI 825 (953)
Q Consensus 746 ~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl 825 (953)
++|.. +++.++.. ..+..+|||+||+|. +|++|.++
T Consensus 732 ~el~~---~~~~a~~~-----------------~~~~~vlvEefI~g~------------------------~E~~V~~l 767 (1073)
T 1a9x_A 732 ADLRR---YFQTAVSV-----------------SNDAPVLLDHFLDDA------------------------VEVDVDAI 767 (1073)
T ss_dssp HHHHH---HHHHCC-------------------------EEEBCCTTC------------------------EEEEEEEE
T ss_pred HHHHH---HHHHHHhh-----------------CCCCcEEEEEccCCC------------------------cEEEEEEE
Confidence 99886 45544322 114689999999996 59999999
Q ss_pred cCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCC
Q 002207 826 GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905 (953)
Q Consensus 826 ~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g 905 (953)
.+++.. .+.+..+.... .+++.|.+...+|+.. ++++..+++++.+++++++||+.|+++|||+++ +|
T Consensus 768 ~d~~~v-~~~~i~e~~~~-------~g~~~gd~~~~~P~~~--l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~--~~ 835 (1073)
T 1a9x_A 768 CDGEMV-LIGGIMEHIEQ-------AGVHSGDSACSLPAYT--LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NN 835 (1073)
T ss_dssp ECSSCE-EEEEEEEESSC-------TTSCGGGCCEEESCSS--CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC--SS
T ss_pred EECCeE-EEEeeEEEEec-------cCCccCCceEEecCCC--CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CC
Confidence 876543 23333333221 2344455566777642 789999999999999999999999999999996 58
Q ss_pred cEEEEeeCCCCCC
Q 002207 906 EVLIIEVNTVPGM 918 (953)
Q Consensus 906 ~~~viEINt~PGl 918 (953)
++||||||++|+-
T Consensus 836 ~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 836 EVYLIEVNPRAAR 848 (1073)
T ss_dssp CEEEEEEECSCCT
T ss_pred eEEEEEEECCCcc
Confidence 8999999999984
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=498.80 Aligned_cols=354 Identities=23% Similarity=0.294 Sum_probs=265.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.|+||+|||||+|+||||||+||.+|+.+|+ .++|+|+||+|+++|.|+....+. ..|..... .
T Consensus 8 ~~~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~-~~~~~v~~i~i~~~g~w~~~~~~~---------~~~~~~~~-----~ 72 (373)
T 3lwb_A 8 DRRVRVAVVFGGRSNEHAISCVSAGSILRNLD-SRRFDVIAVGITPAGSWVLTDANP---------DALTITNR-----E 72 (373)
T ss_dssp TTCEEEEEEEEC-----CHHHHHHHHHHHHSC-TTTEEEEEEEECTTCCEEEECCC------------------------
T ss_pred cCCcEEEEEecCCCCChhhHHHHHHHHHHHhh-hcCceEEEEEecCCCCeEecCchh---------hhhhcccc-----c
Confidence 57889999999999999999999999999997 489999999999998888543220 01100000 0
Q ss_pred hhhHHHH-hhh-hcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCC
Q 002207 569 TEEVLAA-CIE-AIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGI 646 (953)
Q Consensus 569 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~ 646 (953)
...+... ... .+.+. . ...+.. +... .... .....+|+|||++||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~-----------------~--~~~~~~----~~~~-------~~~~-~~~~~~D~vfp~lhG~~ 121 (373)
T 3lwb_A 73 LPQVKSGSGTELALPAD-----------------P--RRGGQL----VSLP-------PGAG-EVLESVDVVFPVLHGPY 121 (373)
T ss_dssp -----------------------------------------------CCCC-------TTHH-HHHHTCSEEEECCEETT
T ss_pred ccccccccccceEeecc-----------------c--ccccee----eccc-------cccc-cccCCccEEEECCCCCC
Confidence 0000000 000 00000 0 000000 0000 0000 01125899999999999
Q ss_pred CCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE
Q 002207 647 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726 (953)
Q Consensus 647 GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Pl 726 (953)
||||+||++||.+||||+||++.++++||||..||++ |+++|||+|++..+.+.+.... ....+.+ +||+
T Consensus 122 gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~~~------~~~~~~l-g~Pv 191 (373)
T 3lwb_A 122 GEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKL---LAADGLPVGAYAVLRPPRSTLH------RQECERL-GLPV 191 (373)
T ss_dssp EECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHH---HHHTTCCBCCEEEECTTCCCCC------HHHHHHH-CSCE
T ss_pred CccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHH---HHHcCcCCCCEEEEECcccchh------HHHHHhc-CCCE
Confidence 9999999999999999999999999999999999999 9999999999999987653110 1124567 6999
Q ss_pred EEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccc
Q 002207 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806 (953)
Q Consensus 727 vVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~ 806 (953)
||||++++||.||++|++.+||.. +++.++++ +..+|||+||+|+
T Consensus 192 vVKP~~ggss~GV~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~------------- 236 (373)
T 3lwb_A 192 FVKPARGGSSIGVSRVSSWDQLPA---AVARARRH-------------------DPKVIVEAAISGR------------- 236 (373)
T ss_dssp EEEESBCSTTTTCEEECSGGGHHH---HHHHHHTT-------------------CSSEEEEECCEEE-------------
T ss_pred EEEeCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCCEEEeCCCCCe-------------
Confidence 999999999999999999999985 67777655 6789999999997
Q ss_pred hhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC--Cc----cccccccccCCCceeEcCCCCCCCCHHHHHHHHHH
Q 002207 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES--GD----ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQR 880 (953)
Q Consensus 807 ~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~--~~----~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~ 880 (953)
|++|.++++++....+.+..++... .+ ||+|+.||..+.+..++|++ +++++.++++++
T Consensus 237 ------------E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~ 301 (373)
T 3lwb_A 237 ------------ELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK---VDDQVAEAIRQL 301 (373)
T ss_dssp ------------EEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC---CCHHHHHHHHHH
T ss_pred ------------EEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC---CCHHHHHHHHHH
Confidence 9999999886542223444555544 55 99999999988777888987 689999999999
Q ss_pred HHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 881 IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 881 a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|.+++++|||+|++|||||++. +|+ |||||||+||||+.|.+++++.+. |..| .+|+.+||++|++|+
T Consensus 302 a~~~~~aLg~~G~~~vDf~~~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~-Gi~~-~~li~~li~~a~~r~ 369 (373)
T 3lwb_A 302 AIRAFAAIDCRGLARVDFFLTD-DGP-VINEINTMPGFTTISMYPRMWAAS-GVDY-PTLLATMIETTLARG 369 (373)
T ss_dssp HHHHHHHTTCCSEEEEEEEEET-TEE-EEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCccEEEEEEEEEC-CCC-EEEEecCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999995 688 999999999999999888877755 4556 599999999999986
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=494.14 Aligned_cols=340 Identities=23% Similarity=0.348 Sum_probs=248.9
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+|||||.|+||||||.||++|+++|+. .+|+|++|+|++++.|+........ + ...+.|.
T Consensus 35 m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~g~~~~~~~~~~~-~--~~~~~~~---------- 100 (383)
T 3k3p_A 35 MSKETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQAGDFIKTQEFDSQ-P--SETDKLM---------- 100 (383)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEEEEESSC-C--C--CCCC----------
T ss_pred ccCCeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecCCCCEEeccccccc-c--ccccccc----------
Confidence 567899999999999999999999999999974 8999999999998777532111000 0 0000000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
... . . . ..+ .+.+ .++ .+.+|+|||++||.+||
T Consensus 101 -------------~~~-~----~--~--~~~--~~~~-------------------~~~----~~~~D~vf~~lhG~~GE 133 (383)
T 3k3p_A 101 -------------TND-T----I--I--ASQ--KIKP-------------------SDI----YEEEAVVFPVLHGPMGE 133 (383)
T ss_dssp -------------CTT-S----C--C--GGG--EECG-------------------GGG----CCTTCEEEEECCSTTTS
T ss_pred -------------ccc-c----c--c--ccc--cccc-------------------ccc----ccCCCEEEEcCCCCCcc
Confidence 000 0 0 0 000 0000 001 13579999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCC-CCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~G-Iptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Plv 727 (953)
||++|++||.+||||+|+++.++++||||..||++ |+++| ||||++..+.+.+. ..+.+.++.+.+ +||+|
T Consensus 134 dg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~G~Ipvp~~~~~~~~~~----~~~~~~~~~~~l-g~Pvv 205 (383)
T 3k3p_A 134 DGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQV---LESATTIPQVAYVALIEGEP----LESKLAEVEEKL-IYPVF 205 (383)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHHCCCCBCCEEEEETTSC----HHHHHHHHHHHC-CSSEE
T ss_pred hHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHhCCCcCCCCEEEEeCccc----hhHHHHHHHHhc-CCCEE
Confidence 99999999999999999999999999999999999 99999 99999999987542 112345566788 69999
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccch
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~ 807 (953)
|||+++++|.||++|++.+||.. +++.++.+ +..+|||+||+|+
T Consensus 206 VKP~~ggss~GV~~v~~~~el~~---al~~a~~~-------------------~~~vlVEe~I~G~-------------- 249 (383)
T 3k3p_A 206 VKPANMGSSVGISKAENRTDLKQ---AIALALKY-------------------DSRVLIEQGVDAR-------------- 249 (383)
T ss_dssp EEECC------CEEESSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE--------------
T ss_pred EEeCCCCCCCCEEEECCHHHHHH---HHHHHHhC-------------------CCeEEEEcCCCCe--------------
Confidence 99999999999999999999875 67777766 6789999999997
Q ss_pred hhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 002207 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 887 (953)
Q Consensus 808 ~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a 887 (953)
|++|+|++++ ... ..+..++....+||||++||..+.+...+|++ +++++.+++++++.+++++
T Consensus 250 -----------E~~v~vl~d~-~~~-~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 313 (383)
T 3k3p_A 250 -----------EIEVGILGNT-DVK-TTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE---IDPVIVEKMRDYAATAFRT 313 (383)
T ss_dssp -----------EEEEEEEESS-SCE-ECCCEEEC-----------------CEESSCC---CCHHHHHHHHHHHHHHHHH
T ss_pred -----------EEEEEEEeCC-Cee-EEeeEEEecCCCccchhhcccCCCeeEEecCC---CCHHHHHHHHHHHHHHHHH
Confidence 9999999864 332 33445666667899999999988888889987 6899999999999999999
Q ss_pred cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 888 Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|||+|++||||+++. +|++|||||||+||||+.|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 314 Lg~~G~~~vDf~~~~-~g~~~vlEINtrPG~t~~S~~p~~~~a~-Gi~~-~~li~~li~~a~~r~ 375 (383)
T 3k3p_A 314 LGCCGLSRCDFFLTE-DGKVYLNELNTMPGFTQWSMYPLLWENM-GLSY-SVLIEELVSLAKEMF 375 (383)
T ss_dssp TTCCEEEEEEEEECT-TCCEEEEEEESSCCCC--CHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEEEEC-CCCEEEEEeeCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHHHH
Confidence 999999999999985 6899999999999999999888887776 4455 599999999999885
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=495.57 Aligned_cols=358 Identities=24% Similarity=0.291 Sum_probs=258.4
Q ss_pred ccccCCCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCcc
Q 002207 484 ALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSL 563 (953)
Q Consensus 484 ~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 563 (953)
.|+..|.++||+|||||.|+||||||.||++|+++|+. .+|+|++|+|++++.|......+ ..+...+
T Consensus 15 ~~~~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~~~~~~~~~~~---------~~~~~~~-- 82 (386)
T 3e5n_A 15 YFQGHMRKIRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDKQGQWHVNDPDS---------FLLHADD-- 82 (386)
T ss_dssp ------CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEECGGG---------SEESTTC--
T ss_pred hhhhhcCCceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECCCCCEEecccch---------hhccccc--
Confidence 45566889999999999999999999999999999975 89999999999988776432110 0000000
Q ss_pred ccccchhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecC
Q 002207 564 VLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVH 643 (953)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~h 643 (953)
... ....... ..+. +.+......+.. . . .....+.+|+|||++|
T Consensus 83 ----~~~-------~~~~~~~--------~~~~------~~~~~~~~~~~~-~---------~-~~~~~~~~D~vf~~lh 126 (386)
T 3e5n_A 83 ----PAR-------IALHRSG--------RGVA------LLPGAQQQQLRP-I---------Q-PEQALAQIDVVFPIVH 126 (386)
T ss_dssp ----TTT-------CEECCCC--------CCEE------ECTTCSSSCEEE-C---------C---CCCCCCSEEEEEEC
T ss_pred ----ccc-------ccccccc--------ccee------eccCccccceec-c---------c-cccccCCCCEEEEcCC
Confidence 000 0000000 0000 000000000000 0 0 0012346899999999
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|.+||||++|++||.+||||+|+++.++++||||..+|++ |+++|||||++..+.+.++.. ..+.++.+.+ +
T Consensus 127 G~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~~----~~~~~~~~~l-g 198 (386)
T 3e5n_A 127 GTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRV---LRDARLAVAPFVCFDRHTAAH----ADVDTLIAQL-G 198 (386)
T ss_dssp SHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHH---HHHTTCCBCCEEEEEHHHHTT----CCHHHHHHHH-C
T ss_pred CCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEEeCcccch----hhHHHHHHhc-C
Confidence 9999999999999999999999999999999999999999 999999999999998654211 1234455678 6
Q ss_pred CcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccccccccccc
Q 002207 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803 (953)
Q Consensus 724 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 803 (953)
||+||||++++||.||++|++.+||.. +++.++.+ +..+|||+||+|+
T Consensus 199 ~PvvVKP~~ggss~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~I~G~---------- 246 (386)
T 3e5n_A 199 LPLFVKPANQGSSVGVSQVRTADAFAA---ALALALAY-------------------DHKVLVEAAVAGR---------- 246 (386)
T ss_dssp SSEEEEESBSCSSTTCEEECSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCSE----------
T ss_pred CCEEEEECCCCcCCCEEEECCHHHHHH---HHHHHHhC-------------------CCcEEEEcCCCCe----------
Confidence 999999999999999999999999985 67776654 6789999999997
Q ss_pred ccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC-ceeEcCCCCCCCCHHHHHHHHHHHH
Q 002207 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIE 882 (953)
Q Consensus 804 ~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~-~~~~~P~~~~~l~~~~~~~i~~~a~ 882 (953)
|++|+|+++++.. +.+..++....+||+|+.||..+. +..++|++ +++++.+++++++.
T Consensus 247 ---------------E~~v~vl~~~~~~--~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~---l~~~~~~~i~~~a~ 306 (386)
T 3e5n_A 247 ---------------EIECAVLGNAVPH--ASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD---IDAQTQQRIQQIAV 306 (386)
T ss_dssp ---------------EEEEEEECSSSCE--EEEEEEECC-----------------CEESSCS---SCHHHHHHHHHHHH
T ss_pred ---------------EEEEEEEeCCCce--EEEeEEEEeCCcccchhcccCCCCCeEEEECCC---CCHHHHHHHHHHHH
Confidence 9999999976522 223335555667999999998643 67788987 68999999999999
Q ss_pred HHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 883 LIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 883 ~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
+++++|||+|++||||+++. +|++|||||||+||||+.|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 307 ~~~~aLg~~G~~~vDf~~~~-dg~~~vlEiN~~PG~t~~S~~p~~~~~~-Gi~~-~~li~~li~~a~~r~ 373 (386)
T 3e5n_A 307 QAYQALGCAGMARVDVFLCA-DGRIVINEVNTLPGFTRISVYPKLWQAS-GLDY-RGLITRLIELALERH 373 (386)
T ss_dssp HHHHHHTCCSEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTT-TCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccEEEEEEEEEC-CCcEEEEEeECCCCCCccCHHHHHHHHh-CCCH-HHHHHHHHHHHHHHh
Confidence 99999999999999999985 6899999999999999999888877765 4456 599999999999875
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=482.77 Aligned_cols=353 Identities=22% Similarity=0.320 Sum_probs=270.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+|||||.|+||||||.||++|+.+|+. .+|+|++|+|++++.|......+ ..+... +
T Consensus 1 m~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~~~~~~~~~~~~---------~~~~~~-------~ 63 (364)
T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDKAGQWHVNDAEN---------YLQNAD-------D 63 (364)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEECSSS---------SBSSTT-------C
T ss_pred CCccEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECCCCCEEecccch---------hhhccc-------c
Confidence 457899999999999999999999999999975 89999999999988776432110 000000 0
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
... . ...... ..+ .+.+......+..... ....+.+|+|||++||.+||
T Consensus 64 ~~~-----~-~~~~~~--------~~~------~~~~~~~~~~~~~~~~-----------~~~~~~~D~vf~~lhG~~gE 112 (364)
T 3i12_A 64 PAH-----I-ALRPSA--------ISL------AQVPGKHQHQLINAQN-----------GQPLPTVDVIFPIVHGTLGE 112 (364)
T ss_dssp TTT-----C-CBCCCS--------CBE------EECTTCSSSCEEETTT-----------CCBCCCCSEEEECCCSTTTT
T ss_pred ccc-----c-cccccc--------ccc------eecccccccceecccc-----------ccccCCCCEEEEeCCCCCCc
Confidence 000 0 000000 000 0000000000000000 00134689999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+|+++.++++||||..+|++ |+++|||||++..+.+.++.. ..+.++.+.+ +||+||
T Consensus 113 dg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~~----~~~~~~~~~l-g~PvvV 184 (364)
T 3i12_A 113 DGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRL---LRDAGLNIAPFITLTRTNRHA----FSFAEVESRL-GLPLFV 184 (364)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEEETTTGGG----CCHHHHHHHH-CSSEEE
T ss_pred CHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEEccccch----hhHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 999999999999998765211 1234455678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 185 KP~~ggss~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~I~G~--------------- 227 (364)
T 3i12_A 185 KPANQGSSVGVSKVANEAQYQQ---AVALAFEF-------------------DHKVVVEQGIKGR--------------- 227 (364)
T ss_dssp EETTCCTTTTCEEESSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE---------------
T ss_pred EECCCCCCcCeEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcCcCCe---------------
Confidence 9999999999999999999875 67777665 6789999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC-ceeEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIANA 887 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~-~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a 887 (953)
|++|+++++++. ...+..++....+||+|+.||..+. +..++|++ +++++.+++++.+.+++++
T Consensus 228 ----------E~~v~vl~~~~~--~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 292 (364)
T 3i12_A 228 ----------EIECAVLGNDNP--QASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ---IPSEVNDKIRAIAIQAYQT 292 (364)
T ss_dssp ----------EEEEEEEESSSC--EEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS---SCHHHHHHHHHHHHHHHHH
T ss_pred ----------EEEEEEEeCCCc--eEeeeEEEecCCCccCHHHcccCCCceEEEeCCC---CCHHHHHHHHHHHHHHHHH
Confidence 999999987642 2334455666678999999998766 77788987 6899999999999999999
Q ss_pred cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 888 Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|||+|++||||+++. +|++||+||||+||||++|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 293 lg~~G~~~vD~~~~~-~g~~~vlEiN~~Pg~t~~s~~p~~~~a~-G~~~-~~l~~~li~~a~~~~ 354 (364)
T 3i12_A 293 LGCAGMARVDVFLTA-DNEVVINEINTLPGFTNISMYPKLWQAS-GLGY-TDLISRLIELALERH 354 (364)
T ss_dssp TTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTT-TCCH-HHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEEEec-CCCEEEEEeeCCCCCCCCCHHHHHHHHh-CcCH-HHHHHHHHHHHHHHH
Confidence 999999999999985 6899999999999999999888887776 4555 599999999999875
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=468.65 Aligned_cols=319 Identities=27% Similarity=0.344 Sum_probs=266.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccc--ccccCCCCCccccccccccccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA--QVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
+||||+|||||.|+||||||.||++|++||++ +|+++++++++.|+..+.. .+..... .+.+......+
T Consensus 2 ~~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--- 72 (322)
T 2fb9_A 2 EFMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF---PTDLAVIAQDGRWLLGEKALTALEAKAA---PEGEHPFPPPL--- 72 (322)
T ss_dssp CCCCEEEEEECSSTTHHHHHHHHHHHHHHCSS---CEEEEEECTTSCEECHHHHHHHTTSSCC---CCCCBCSSCCC---
T ss_pred CCcEEEEEeCCCchhHHHHHHHHHHHHHHhcc---CeEEEEEcCCCCEEecccchhhhccccc---cceeccccccc---
Confidence 35899999999999999999999999999988 9999999999999743210 1110000 11111000000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
. ..++|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++..+.+.+.
T Consensus 73 ----~--~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~-- 144 (322)
T 2fb9_A 73 ----S--WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEP-- 144 (322)
T ss_dssp ----C--CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSC--
T ss_pred ----c--ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECchh--
Confidence 0 24799999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
. . + .++||+||||++++||+||++|++.+|+.+....++ .++..+|||+||+|++|++|.|++++
T Consensus 145 -~--~------~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEe~I~G~~E~~v~vl~~~--- 209 (322)
T 2fb9_A 145 -P--V------V-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAF--RYDEKAVVEKALSPVRELEVGVLGNV--- 209 (322)
T ss_dssp -C--C------C-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHT--TTCSEEEEEECCSSCEEEEEEEESSS---
T ss_pred -h--h------h-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH--hcCCeEEEEeCCCCCeeEEEEEEeCC---
Confidence 0 1 1 367899999999999999999999999887766554 36789999999996599999999532
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeee
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~ 393 (953)
.+.+++++++.. ...||+|..||..+. +.+.+|+.+++++.++++++|.+++++|||+|++||||++
T Consensus 210 --~~~~~~~~ei~~----------~~~~~~~~~k~~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 276 (322)
T 2fb9_A 210 --FGEASPVGEVRY----------EAPFYDYETKYTPGR-AELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFL 276 (322)
T ss_dssp --SCEEEEEEEEEE----------ECCEEETTTEEECCE-EEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEE
T ss_pred --CceEeeeEEEee----------CCCccCHHHcccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEE
Confidence 245667777653 246999999998654 6778999999999999999999999999999999999986
Q ss_pred cCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+ +|++||+||||+||||.+|+||++++++|++|.+++.++|+.|++
T Consensus 277 -----------------~-~g~~~vlEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~ 322 (322)
T 2fb9_A 277 -----------------A-EGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPELLRRLVELALT 322 (322)
T ss_dssp -----------------E-TTEEEEEEEESSCCCSSSCHHHHHHHHTTCCHHHHHHHHHHHHTC
T ss_pred -----------------E-CCcEEEEEEECCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 6 789999999999999999999999999999999999999999873
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-53 Score=480.09 Aligned_cols=340 Identities=21% Similarity=0.300 Sum_probs=274.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHh-hcCCCEEEEEEEecCCceeeecc----------cccc-cCCCCCcc--cc
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRNLNAYAISS----------AQVY-SNTPADFD--FK 142 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL-~~~g~~V~~i~id~~g~~~~~~~----------~~~~-~~~~~~~~--~~ 142 (953)
||||+|||||.|+|||||+.||++|++|| ++.||+|+++++++++.|+.... ..+. .. ...+. .+
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAF-MKTVDASDP 81 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHH-HTSCCTTCT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhcccc-ccccccccc
Confidence 57999999999999999999999999999 99999999999999998874200 0000 00 00000 00
Q ss_pred ccccccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCC
Q 002207 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222 (953)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~ 222 (953)
+.+. .+... ..++|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|+
T Consensus 82 ~~~~--------~~~~~-~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~ 152 (377)
T 1ehi_A 82 LARI--------HALKS-AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTK 152 (377)
T ss_dssp TCTT--------GGGGT-TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCC
T ss_pred cCcc--------hhhcc-ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCC
Confidence 0000 00001 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+..+.+.+.....+.++.+ .++||+||||+.++||+||++|++.+|+.+++..++ .++..+|||+||+|.+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-----~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEe~I~G~~E~ 225 (377)
T 1ehi_A 153 YIVVDPESANNWSWDKIVA-----ELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSF--QYDYKVLIEEAVNGAREL 225 (377)
T ss_dssp EEEECTTGGGGCCHHHHHH-----HHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHT--TTCSCEEEEECCCCSCEE
T ss_pred EEEEeccccchHHHHHHHH-----hcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCceE
Confidence 9998765321111222222 257899999999999999999999999887766544 367899999999965999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+|.|++++ .+.+++++|+.... .....+||+|..||..+..+.+.+|+.+++++.++++++|.+++++||
T Consensus 226 ~v~vl~~~-----~~~~~~~~ei~~~~-----~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg 295 (377)
T 1ehi_A 226 EVGVIGND-----QPLVSEIGAHTVPN-----QGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLN 295 (377)
T ss_dssp EEEEEESS-----SCEEEEEEEEECTT-----SSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCC-----CcEEEeeEEEEecC-----CCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999632 24566777765310 000246999999998652367889999999999999999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|+|++||||++ +++|++||+||||+||||.+|+||++++++|++|.+++.++|+.|+.|+.
T Consensus 296 ~~G~~~vD~~~-----------------~~~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~li~~al~r~~ 356 (377)
T 1ehi_A 296 LRGEARMDFLL-----------------DENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFEDFA 356 (377)
T ss_dssp CCEEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEE-----------------eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Confidence 99999999986 56789999999999999999999999999999999999999999999864
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=465.28 Aligned_cols=335 Identities=21% Similarity=0.290 Sum_probs=271.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc-hh
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL-SE 155 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (953)
+|||+||+||.|.|||||+.||++|+++|++.||+|+++++++++.|+..+.............+++.+.......+ ..
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKK 82 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccccccceeec
Confidence 57999999999999999999999999999999999999999999998764321000000000001111100000000 00
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
.......++|+|||.+||.+||||.+|++||.+|+||+|+++.++++++||..+|++|+++|||+|++..+.+.+...
T Consensus 83 ~~~~~~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~-- 160 (343)
T 1e4e_A 83 NHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPV-- 160 (343)
T ss_dssp TTEEEEEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTTCCCC--
T ss_pred ccccccccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEechhhhh--
Confidence 000012479999999999999999999999999999999999999999999999999999999999999987654311
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
. ..++||+||||++++||+||.+|++.+|+......++ .++..+|||+||+| +|++|.+++++.
T Consensus 161 --~-------~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~~lvEe~I~G-~E~~v~vl~~~~---- 224 (343)
T 1e4e_A 161 --A-------ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESAR--QYDSKILIEQAVSG-CEVGCAVLGNSA---- 224 (343)
T ss_dssp --G-------GGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHT--TTCSSEEEEECCCS-EEEEEEEEEETT----
T ss_pred --h-------hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEEEeCcCC-eEEEEEEEeCCC----
Confidence 1 1367899999999999999999999999877666543 36789999999997 999999997532
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCcc----CCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL----PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~----~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
.+.+++++|+.. .+.||+|++||. .+. +.+.+|+.++++..++++++|.+++++||++|++||||
T Consensus 225 ~~~~~~~~ei~~----------~~~~~~~~~k~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 293 (343)
T 1e4e_A 225 ALVVGEVDQIRL----------QYGIFRIHQEVEPEKGSEN-AVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDM 293 (343)
T ss_dssp CCEECCCEEEEE----------SSSCCCGGGSSSGGGCCSS-EEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEeeeEEEee----------CCCccCHhhcccccCCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEE
Confidence 256677777653 346999999998 443 67789999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++|++||+||||+||+|.+|+||++++++|+++.+++.++|+.|++
T Consensus 294 ~~-----------------~~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~ 342 (343)
T 1e4e_A 294 FL-----------------QDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 (343)
T ss_dssp EE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred EE-----------------eCCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 86 67899999999999999999999999999999999999999999874
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=465.46 Aligned_cols=304 Identities=24% Similarity=0.338 Sum_probs=240.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
+++||+||+||.|+|||||+.||++|+++|++.||+|+.++. .++. +. .
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~-~~~~--------------------~~----------~ 60 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDP-AERP--------------------LS----------A 60 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECT-TTSC--------------------TT----------H
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeC-CCch--------------------HH----------H
Confidence 357999999999999999999999999999999999998751 2110 00 0
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
+ ...++|+|||++||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++..+.+.+.....
T Consensus 61 l---~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~ 137 (317)
T 4eg0_A 61 L---KDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAAR 137 (317)
T ss_dssp H---HHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHH
T ss_pred h---hhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHH
Confidence 0 0237999999999999999999999999999999999999999999999999999999999999998876532221
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-CCeEEEEEEEEeCCCCc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-GGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-Gg~E~tv~Vl~~~~g~~ 314 (953)
+.++.. .++||+||||..+++|.||++|++.+|+.+.+...+ .++..+|||+||+ | +|++|.|+++ .
T Consensus 138 ~~~~~~-----~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~~lvEe~i~~G-~E~~v~vl~~----~ 205 (317)
T 4eg0_A 138 ATDIVA-----KLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEGG-GEYTACIAGD----L 205 (317)
T ss_dssp HHHHHH-----HHCSCEEEEECC-----CCEEECSGGGHHHHHHHHT--TTCSEEEEEECCCSS-EEEEEEEETT----C
T ss_pred HHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH--hCCCeEEEEcCCCCC-cEEEEEEECC----c
Confidence 211112 257899999999999999999999999877766543 4678999999999 7 9999999942 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
.+++.++. . ...||+|..||..+. +.+.+|+.+++++.+++++.|.+++++|||+|++||||++
T Consensus 206 ----~~~~~~i~--~--------~~~~~~~~~k~~~g~-~~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~- 269 (317)
T 4eg0_A 206 ----DLPLIKIV--P--------AGEFYDYHAKYVAND-TQYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFML- 269 (317)
T ss_dssp ----CCCCEEEE--C------------------------CEEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEE-
T ss_pred ----ccceEEEe--e--------CCceechhhcccCCC-eeEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE-
Confidence 12333332 2 456999999998765 6788999999999999999999999999999999999986
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++
T Consensus 270 ----------------~~~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~ 316 (317)
T 4eg0_A 270 ----------------DAAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVLSLTLN 316 (317)
T ss_dssp ----------------CTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHTTC-
T ss_pred ----------------eCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999999998864
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=468.37 Aligned_cols=339 Identities=25% Similarity=0.302 Sum_probs=260.8
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
+++||+|||||.|+||||||.||.+|+++|+. .+|+|++|.+++++.|+....... ....+.|.
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~~~~~~~~~~~~~----~~~~~~~~----------- 65 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITKSGAWQLCDGPGE----NWEDGNCR----------- 65 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEESCSSS----SSSSSCCE-----------
T ss_pred CCCEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECCCCCEEeccchhh----hhcccccc-----------
Confidence 57899999999999999999999999999974 899999999999877764321100 00000010
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.+ .+.+.. ....+.... +. ...++.+|+|||++||.+|||
T Consensus 66 ~~-------~~~~~~-----------------------~~~~~~~~~--~~--------~~~~~~~D~v~~~lhG~~ged 105 (346)
T 3se7_A 66 PA-------VLSPDR-----------------------SVHGLLVLE--QG--------KYETIRLDLVLPVLHGKLGED 105 (346)
T ss_dssp EE-------EECCCT-----------------------TTCEEEEEE--TT--------EEEEEECSEEEECCCSTTTTS
T ss_pred cc-------eeccCc-----------------------cCccceecc--cc--------cccccCCCEEEEccCCCCCCC
Confidence 00 000000 000000000 00 001346899999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|++|++||.+||||+|+++.++++||||..||++ |+++|||||++..+.+.+. .....+ +||+|||
T Consensus 106 g~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~----------~~~~~l-g~PvvvK 171 (346)
T 3se7_A 106 GAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLV---ARSAGIATPNFWTVTADEK----------IPTDQL-TYPVFVK 171 (346)
T ss_dssp SHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCBCCCEEEEETTSC----------CCTTTC-CSSEEEE
T ss_pred hHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHH---HHHcCcCcCCEEEEcCcHH----------HHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999999987541 113467 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 172 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~---------------- 213 (346)
T 3se7_A 172 PARSGSSFGVSKVAREEDLQG---AVEAAREY-------------------DSKVLIEEAVIGT---------------- 213 (346)
T ss_dssp ESSCCTTTTCEEECSHHHHHH---HHHHHTTT-------------------CSEEEEEECCCSE----------------
T ss_pred eCCCCCCcCEEEECCHHHHHH---HHHHHHhC-------------------CCcEEEEeCcCCE----------------
Confidence 999999999999999999875 67766544 6789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccc----cccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL----EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~----~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|.++++++... +.+..++...++||+| +.||..+.+...+|++ +++++.+++++.+.+++
T Consensus 214 ---------E~~v~vl~~~~~~~-~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~---l~~~~~~~i~~~a~~~~ 280 (346)
T 3se7_A 214 ---------EIGCAVMGNGPELI-TGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD---ISTTSRSLVQDTAKAVY 280 (346)
T ss_dssp ---------EEEEEEEEETTEEE-ECCCEEECCC--------------CGGGSCEESSCC---CCHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEEEecCCCeE-EEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC---CCHHHHHHHHHHHHHHH
Confidence 99999999876543 4566677777789999 9999987777888987 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
++|||+|++||||+++. +|++||+||||+||||++|.+++++.+. |..| .+++.+||+.|++|+
T Consensus 281 ~~lg~~G~~~vD~~~~~-~g~~~vlEiN~rPG~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~~~ 344 (346)
T 3se7_A 281 RALGCRGLSRVDLFLTE-DGKVVLNEVNTFPGMTSYSRYPRMMTAA-GLSR-ADVIDRLVSLALAGK 344 (346)
T ss_dssp HHHTCCEEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHHHHC--
T ss_pred HHhCCceEEEEEEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHHhh
Confidence 99999999999999985 6899999999999999999888887764 5556 589999999999885
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=465.86 Aligned_cols=339 Identities=24% Similarity=0.331 Sum_probs=264.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|||+||+||.|.|||||+.||++|+++|++.||+|+++++++++.|+..+...........+.+. .+....+. .+
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~ 78 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLE-NGEALEIS---QL 78 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGG-GSEEECSS---GG
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccc-cccccccc---cc
Confidence 579999999999999999999999999999999999999999999887543210000000000000 01000000 00
Q ss_pred HHh--hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch-
Q 002207 157 AEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE- 233 (953)
Q Consensus 157 ~~~--~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~- 233 (953)
... ....+|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++..+.+.+...
T Consensus 79 ~~~~~~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~ 158 (364)
T 2i87_A 79 LKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY 158 (364)
T ss_dssp GGBCTTSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHH
T ss_pred ccccccccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhccc
Confidence 000 12469999999999999999999999999999999999999999999999999999999999999887543110
Q ss_pred --hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 234 --SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 234 --~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
..+..+.+ .++||+||||+.++||+||.+|++.+|+......++ .++..+|||+||+| +|++|.+++++
T Consensus 159 ~~~~~~~~~~-----~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~--~~~~~~lvEe~I~G-~E~~v~vl~~~- 229 (364)
T 2i87_A 159 EHNILKLVND-----KLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNA-REIEVAVLGND- 229 (364)
T ss_dssp HHHHHHHHHH-----HCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHH--TTCSEEEEEECCCC-EEEEEEEEESS-
T ss_pred chhHHHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH--hcCCeEEEEeCccC-eEEEEEEEcCC-
Confidence 11223222 267899999999999999999999999877666554 36789999999998 99999999632
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
.+.+++++|+.. ...||+|..||..+. +.+.+|+.+++++.++++++|.+++++|||+|++||||
T Consensus 230 ----~~~~~~~~e~~~----------~~~~~~~~~k~~~g~-~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 294 (364)
T 2i87_A 230 ----YPEATWPGEVVK----------DVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF 294 (364)
T ss_dssp ----SCEECCCEEECC----------SCCC------------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ----CcEEeeeEEEec----------CCCcCCHHHcccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 245667776642 346999999998654 56789999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
++ +++|++||+||||+||+|.+|+||++++++|+++.+++.++|+.|+.|+.
T Consensus 295 ~~-----------------~~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li~~al~~~~ 346 (364)
T 2i87_A 295 FV-----------------TEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQ 346 (364)
T ss_dssp EE-----------------CTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EE-----------------ecCCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHhhh
Confidence 86 57899999999999999999999999999999999999999999998853
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=451.27 Aligned_cols=347 Identities=24% Similarity=0.273 Sum_probs=265.7
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHH-hccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCcccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNL-QAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRH 567 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l-~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 567 (953)
|.|+||+|||||.|.||||||.||.+|+++| +. .+|+|++|++++++.|... + +...... ..
T Consensus 1 m~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~~~~~~~~--~------------~~~~~~~--~~ 63 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQNGFFLDT--E------------SSKKILA--LE 63 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECTTSCBCCH--H------------HHHHHHT--TC
T ss_pred CCCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcc-cCcEEEEEEEcCCCCEEec--c------------ccccccc--cc
Confidence 3478999999999999999999999999999 75 8999999999997665421 0 0000000 00
Q ss_pred chhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCC
Q 002207 568 TTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIG 647 (953)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~G 647 (953)
+... +.. ... +. +....++. |. .+.. ..+.+|+|||.+||.+|
T Consensus 64 ~~~~-~~~-~~~--~~-------------------~~~~~~~~--------~~-----~~~~-~~~~~D~v~~~~~g~~g 106 (377)
T 1ehi_A 64 DEQP-IVD-AFM--KT-------------------VDASDPLA--------RI-----HALK-SAGDFDIFFPVVHGNLG 106 (377)
T ss_dssp CHHH-HHH-HHH--TS-------------------CCTTCTTC--------TT-----GGGG-TTCCCSEEEEECCSTTT
T ss_pred chhh-hcc-ccc--cc-------------------cccccccC--------cc-----hhhc-cccCCCEEEEecCCCCC
Confidence 0000 000 000 00 00000000 00 0010 12468999999999999
Q ss_pred CccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEE
Q 002207 648 EDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727 (953)
Q Consensus 648 Edg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Plv 727 (953)
|||++|++||.+|+||+|+++.++++|+||..||++ |+++|||||++..+.+.+.. ...+.++.+.+ +||+|
T Consensus 107 edg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~----~~~~~~~~~~~-g~Pvv 178 (377)
T 1ehi_A 107 EDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKEL---LTVNGIRNTKYIVVDPESAN----NWSWDKIVAEL-GNIVF 178 (377)
T ss_dssp SSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHH---HHTTTCCCCCEEEECTTGGG----GCCHHHHHHHH-CSCEE
T ss_pred cCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHH---HHHcCCCCCCEEEEeccccc----hHHHHHHHHhc-CCCEE
Confidence 999999999999999999999999999999999999 99999999999998764310 11234455678 69999
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC-cccccccccccccc
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKNA 806 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~~ 806 (953)
|||+.+++|.||++|++.++|.. +++.++.+ +..+|||+||+| +
T Consensus 179 VKP~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~~------------- 223 (377)
T 1ehi_A 179 VKAANQGSSVGISRVTNAEEYTE---ALSDSFQY-------------------DYKVLIEEAVNGAR------------- 223 (377)
T ss_dssp EEESSCCTTTTEEEECSHHHHHH---HHHHHTTT-------------------CSCEEEEECCCCSC-------------
T ss_pred EEeCCCCCCcCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcCCCCCc-------------
Confidence 99999999999999999998875 66666544 578999999999 6
Q ss_pred hhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec-----CCccccccccccCC-CceeEcCCCCCCCCHHHHHHHHHH
Q 002207 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-----SGDILSLEEKFQGG-TGINLTPPPASIMSTEALDKCKQR 880 (953)
Q Consensus 807 ~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~-----~~~~~d~~~Ky~~g-~~~~~~P~~~~~l~~~~~~~i~~~ 880 (953)
|++|.|++++.. . +.+..++.. ..+||+|+.||..+ .+..++|++ ++++..++++++
T Consensus 224 ------------E~~v~vl~~~~~-~-~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~---l~~~~~~~i~~~ 286 (377)
T 1ehi_A 224 ------------ELEVGVIGNDQP-L-VSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ---LSPEVTKEVKQM 286 (377)
T ss_dssp ------------EEEEEEEESSSC-E-EEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC---CCHHHHHHHHHH
T ss_pred ------------eEEEEEEcCCCc-E-EEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC---CCHHHHHHHHHH
Confidence 999999987532 2 334445554 46799999999877 667788987 689999999999
Q ss_pred HHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 881 IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 881 a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
+.+++++|||+|++||||+++. +|++|||||||+||||++|.+++++.+ .|..| .+++.++|+.|++|+
T Consensus 287 a~~~~~alg~~G~~~vD~~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a-~G~~~-~~l~~~li~~al~r~ 355 (377)
T 1ehi_A 287 ALDAYKVLNLRGEARMDFLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDY-SDINN-AKLVDMLIDYGFEDF 355 (377)
T ss_dssp HHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCGGGTGGGG-GTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHH-hCCCH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999985 689999999999999999988877765 45555 599999999999874
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=449.34 Aligned_cols=324 Identities=22% Similarity=0.282 Sum_probs=250.5
Q ss_pred cCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccc----c--ccc
Q 002207 73 RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK----L--ESL 146 (953)
Q Consensus 73 ~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~----~--~~~ 146 (953)
++.++|||+|||||.|+|||||+.||++|++||+ ||+|+++++++++.|+..+.. .. ....+... . ...
T Consensus 16 ~~~~~~~v~vl~gG~s~E~~vSl~S~~~v~~al~--g~~v~~i~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 90 (367)
T 2pvp_A 16 PRGSHMEFCVLFGGASFEHEISIVSAIALKGVLK--DRIKYFIFLDENHHFYLIEES-NM--HSKYFAQIKEKKLPPLIL 90 (367)
T ss_dssp ----CCCEEEEEECSSTTHHHHHHHHHHHHHHHG--GGEEEEEEECTTCCEEECCGG-GC--SHHHHHTGGGSCCCCBEE
T ss_pred ccccCCEEEEEECCCCcchhhhHHHHHHHHHHhC--CCeEEEEEECCCCCEEecccc-cc--chhhhccccccccccccc
Confidence 3445689999999999999999999999999999 999999999999998754211 00 00000000 0 000
Q ss_pred ccc-cCcchhHHHhhcc--CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCe
Q 002207 147 AQG-FGSLSEFAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223 (953)
Q Consensus 147 ~~~-~~~~~~~~~~~~~--~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~ 223 (953)
... +.... ... .. ++|+|||++||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++
T Consensus 91 ~~~~~~~~~-~~~--~~~~~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~ 167 (367)
T 2pvp_A 91 THNGLLKNS-FLG--AKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDY 167 (367)
T ss_dssp ETTEEEEEE-TTE--EEEEECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCC
T ss_pred cCcceeccc-ccc--ccccCCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCE
Confidence 000 00000 000 11 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeE--
Q 002207 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE-- 301 (953)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E-- 301 (953)
..+.+.+.. ++.+ . ..++||+||||++++||+||++|++.+|+.++...++ .++..+|||+||+|++|
T Consensus 168 ~~~~~~~~~--~~~~-~-----~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~--~~~~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 168 VLLNEKNRA--NALD-L-----MNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYN 237 (367)
T ss_dssp EEECTTTGG--GHHH-H-----CCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHT--TTCSCEEEEECCTTCEEEE
T ss_pred EEEeCCchH--HHHH-H-----hccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH--hcCCcEEEEeCCCCCceee
Confidence 998765421 1111 1 2478899999999999999999999998877666554 36789999999996599
Q ss_pred -EEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHH
Q 002207 302 -FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380 (953)
Q Consensus 302 -~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~a 380 (953)
++|.| + | .+++..+ |+. . ..+||||++||..++ +.+.+|+.+++++.++++++|.+++++
T Consensus 238 vi~v~v-~---g---~~~~~~~-ei~--~--------~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~a 298 (367)
T 2pvp_A 238 LAGCKI-K---K---DFCFSYI-EEP--N--------KQEFLDFKQKYLDFS-RNKAPKASLSNALEEQLKENFKKLYSD 298 (367)
T ss_dssp EEEEEE-T---T---EEEEEEE-EET--T--------TTEEECCCCSSCCSC-CCSCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEE-C---C---EEEEEEE-EEe--c--------CCceEcccccccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 55555 2 2 2333333 432 1 456999999998654 556789999999999999999999999
Q ss_pred hCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHH-HhhhC
Q 002207 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH-ACSRF 459 (953)
Q Consensus 381 Lg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~-a~~r~ 459 (953)
|||+|++||||++ + +|++||+||||+||||.+|++| +|.+|+.++++. ++.|.
T Consensus 299 Lg~~G~~~vDf~~-----------------~-~g~~~vlEiN~rpg~t~~s~~p--------~~~~l~~~li~~~~~~~~ 352 (367)
T 2pvp_A 299 LFDGAIIRCDFFV-----------------I-ENEVYLNEINPIPGSLANYLFD--------DFKTTLENLAQSLPKTPK 352 (367)
T ss_dssp TSTTCCEEEEEEE-----------------E-TTEEEEEEEESSCGGGGGGGSS--------SHHHHHHHHHHHCC----
T ss_pred cCCCCEEEEEEEE-----------------E-CCeEEEEEEeCCCCCCcccccC--------CHHHHHHHHHhCccccCC
Confidence 9999999999986 5 7889999999999999999998 999999999988 56553
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=434.65 Aligned_cols=321 Identities=28% Similarity=0.409 Sum_probs=256.0
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.|+||+|||||.|.||||||.||++|+++|+. +|++|+|++++.|... .
T Consensus 1 m~~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~----~v~~i~~~~~~~~~~~-------------------~------- 50 (322)
T 2fb9_A 1 MEFMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF----PTDLAVIAQDGRWLLG-------------------E------- 50 (322)
T ss_dssp CCCCCEEEEEECSSTTHHHHHHHHHHHHHHCSS----CEEEEEECTTSCEECH-------------------H-------
T ss_pred CCCcEEEEEeCCCchhHHHHHHHHHHHHHHhcc----CeEEEEEcCCCCEEec-------------------c-------
Confidence 357899999999999999999999999999952 8999999887655421 0
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
.+ ...+.... . .+. +. .. +..+ .++.+|+|||.+||.+||
T Consensus 51 -~~-----~~~~~~~~-~---~~~----------~~-----------~~-~~~~--------~~~~~D~v~~~~hg~~ge 90 (322)
T 2fb9_A 51 -KA-----LTALEAKA-A---PEG----------EH-----------PF-PPPL--------SWERYDVVFPLLHGRFGE 90 (322)
T ss_dssp -HH-----HHHTTSSC-C---CCC----------CB-----------CS-SCCC--------CCTTCSEEEEECCSTTTT
T ss_pred -cc-----hhhhcccc-c---cce----------ec-----------cc-cccc--------cccCCCEEEEeCCCCCCc
Confidence 00 00000000 0 000 00 00 0000 134589999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+|+||+|+++.++++|+||..+|++ |+++|||+|++..+.+.+. + .. ++ +||+||
T Consensus 91 dg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~------~----~~-~~-g~Pvvv 155 (322)
T 2fb9_A 91 DGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRV---LAQAGVPVVPWVAVRKGEP------P----VV-PF-DPPFFV 155 (322)
T ss_dssp SSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEETTSC------C----CC-CS-CSCEEE
T ss_pred cHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEECchh------h----hh-cc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876541 0 01 56 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC-cccccccccccccch
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKNAD 807 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~~~ 807 (953)
||+++++|.||++|++.++|.. +++.++.+ +..+|||+||+| +
T Consensus 156 KP~~g~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~~-------------- 199 (322)
T 2fb9_A 156 KPANTGSSVGISRVERFQDLEA---ALALAFRY-------------------DEKAVVEKALSPVR-------------- 199 (322)
T ss_dssp EETTCCTTTTCEEESSHHHHHH---HHHHHTTT-------------------CSEEEEEECCSSCE--------------
T ss_pred EeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCeEEEEeCCCCCe--------------
Confidence 9999999999999999998875 66666543 578999999999 5
Q ss_pred hhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 002207 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 887 (953)
Q Consensus 808 ~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a 887 (953)
|++|.+++++... ..+..++.....+|+|+.||..|.+..++|++ +++++.++++++|.+++++
T Consensus 200 -----------E~~v~vl~~~~~~--~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 263 (322)
T 2fb9_A 200 -----------ELEVGVLGNVFGE--ASPVGEVRYEAPFYDYETKYTPGRAELLIPAP---LDPGTQETVQELALKAYKV 263 (322)
T ss_dssp -----------EEEEEEESSSSCE--EEEEEEEEEECCEEETTTEEECCEEEEESSCC---CCTTHHHHHHHHHHHHHHH
T ss_pred -----------eEEEEEEeCCCce--EeeeEEEeeCCCccCHHHcccCCCeEEEeCCC---CCHHHHHHHHHHHHHHHHH
Confidence 9999999875422 23334444445799999999987777788987 5788999999999999999
Q ss_pred cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 888 Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||++|++||||+++ +|++||+||||+||||++|.+++++.+. |..| .+++.+||++|++
T Consensus 264 lg~~G~~~vD~~~~--~g~~~vlEiN~rpg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~ 322 (322)
T 2fb9_A 264 LGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAG-GVAY-PELLRRLVELALT 322 (322)
T ss_dssp HTCCSEEEEEEEEE--TTEEEEEEEESSCCCSSSCHHHHHHHHT-TCCH-HHHHHHHHHHHTC
T ss_pred hCCceEEEEEEEEE--CCcEEEEEEECCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHhC
Confidence 99999999999998 5899999999999999999888877765 5555 5889999999874
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=434.15 Aligned_cols=337 Identities=23% Similarity=0.353 Sum_probs=264.5
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.++||+||+||.|.||||||.||.+|+.+|+. .+|+|++|.+++++.|.....+ ....+........+
T Consensus 2 ~~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------- 69 (343)
T 1e4e_A 2 NRIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITKSGVWKMCEKP-CAEWENENCYSAVL---------- 69 (343)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEESCC-CTTCCCTTCEEEEE----------
T ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcCCCCEEecccc-hhhcccccccceec----------
Confidence 47899999999999999999999999999974 8999999999998766543111 00000000000000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.+. .. . . . ..... .+ ...++.+|+|||++||.+|||
T Consensus 70 -----------~~~--------~~-~----~-~----~~~~~----~~-----------~~~~~~~D~v~~~~~g~~ged 105 (343)
T 1e4e_A 70 -----------SPD--------KK-M----H-G----LLVKK----NH-----------EYEINHVDVAFSALHGKSGED 105 (343)
T ss_dssp -----------CSC--------TT-T----C-E----EEEEE----TT-----------EEEEEECSEEEECCCSTTTTS
T ss_pred -----------ccc--------cc-c----c-c----ceeec----cc-----------ccccccCCEEEEeCCCCCCcC
Confidence 000 00 0 0 0 00000 00 001245799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|++|++||.+|+||+|+++.++++|+||..+|++ |+++|||+|++..+.+.+... .+.+ +||+|||
T Consensus 106 ~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~~~----------~~~~-~~PvvvK 171 (343)
T 1e4e_A 106 GSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIV---AKNAGIATPAFWVINKDDRPV----------AATF-TYPVFVK 171 (343)
T ss_dssp SHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCBCCCEEEECTTCCCC----------GGGS-CSCEEEE
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCcCCEEEEechhhhh----------hhcc-CCCEEEE
Confidence 9999999999999999999999999999999999 999999999999987754321 1467 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 172 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~I~G~---------------- 213 (343)
T 1e4e_A 172 PARSGSSFGVKKVNSADELDY---AIESARQY-------------------DSKILIEQAVSGC---------------- 213 (343)
T ss_dssp ESSCCTTTTCEEECSGGGHHH---HHHHHTTT-------------------CSSEEEEECCCSE----------------
T ss_pred eCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEeCcCCe----------------
Confidence 999999999999999999985 56666543 5789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcccccccccc----CCCceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ----GGTGINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~----~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|.++++++... ..+..++...++||+|+.||+ .|.+...+|++ ++++..+++++++.+++
T Consensus 214 ---------E~~v~vl~~~~~~~-~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~ 280 (343)
T 1e4e_A 214 ---------EVGCAVLGNSAALV-VGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD---LSAEERGRIQETVKKIY 280 (343)
T ss_dssp ---------EEEEEEEEETTCCE-ECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS---SCHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEEEeCCCCeE-EeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC---CCHHHHHHHHHHHHHHH
Confidence 99999998765533 445556555667999999998 67667778887 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
++||+.|++||||+++. +|++||+||||+||+|++|.+++++.+. |..| .+++.+||++|++
T Consensus 281 ~alg~~G~~~vD~~~~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~ 342 (343)
T 1e4e_A 281 KTLGCRGLARVDMFLQD-NGRIVLNEVNTLPGFTSYSRYPRMMAAA-GISL-PELIDRLIVLALK 342 (343)
T ss_dssp HHTTCEEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHHHHC
T ss_pred HHcCCceEEEEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHhc
Confidence 99999999999999985 6899999999999999999888877776 5555 5899999999875
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-48 Score=431.38 Aligned_cols=304 Identities=30% Similarity=0.408 Sum_probs=237.8
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.++||+||+||.|.||||||.||++|+++|++ .+|+|++|. ... . | .
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~--~~~------------------~-~-----------~ 58 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFD--PAE------------------R-P-----------L 58 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEEC--TTT------------------S-C-----------T
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEe--CCC------------------c-h-----------H
Confidence 46799999999999999999999999999975 799998763 110 0 0 0
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.. + .+..+|+||+++||.+|||
T Consensus 59 ~~--------------------------------------------------------l--~~~~~D~v~~~~hg~~ge~ 80 (317)
T 4eg0_A 59 SA--------------------------------------------------------L--KDEGFVRAFNALHGGYGEN 80 (317)
T ss_dssp TH--------------------------------------------------------H--HHTTCCEEEECCCSGGGTS
T ss_pred HH--------------------------------------------------------h--hhcCCCEEEEcCCCCCCch
Confidence 00 0 1124699999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|++|++||.+|+||+|+++.++++|+||..+|++ |+++|||||++..+.+.+. ..+.++++.+.+ +||+|||
T Consensus 81 ~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~----~~~~~~~~~~~~-g~PvvvK 152 (317)
T 4eg0_A 81 GQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLV---WQQTGVPTPPFETVMRGDD----YAARATDIVAKL-GLPLFVK 152 (317)
T ss_dssp SHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEETTSC----HHHHHHHHHHHH-CSCEEEE
T ss_pred HHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHH---HHHCCcCCCCEEEEECchh----HHHHHHHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999999887542 122233334678 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc-Ccccccccccccccchh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADR 808 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~ 808 (953)
|..+++|.||++|++.++|.. +++.++.+ +..+|||+||+ |+
T Consensus 153 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~i~~G~--------------- 195 (317)
T 4eg0_A 153 PASEGSSVAVLKVKTADALPA---ALSEAATH-------------------DKIVIVEKSIEGGG--------------- 195 (317)
T ss_dssp ECC-----CCEEECSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCSSE---------------
T ss_pred eCCCCCCCCEEEECCHHHHHH---HHHHHHhC-------------------CCeEEEEcCCCCCc---------------
Confidence 999999999999999999985 56665443 57899999999 86
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.++++. ..+.+++.....||+|+.||..+.+...+|++ ++++..+++++.+.+++++|
T Consensus 196 ----------E~~v~vl~~~-----~~~~~~i~~~~~~~~~~~k~~~g~~~~~~P~~---l~~~~~~~l~~~a~~~~~~l 257 (317)
T 4eg0_A 196 ----------EYTACIAGDL-----DLPLIKIVPAGEFYDYHAKYVANDTQYLIPCG---LPAEQETELKRIARRAFDVL 257 (317)
T ss_dssp ----------EEEEEEETTC-----CCCCEEEEC---------------CEEESSCS---SCHHHHHHHHHHHHHHHHTT
T ss_pred ----------EEEEEEECCc-----ccceEEEeeCCceechhhcccCCCeeEEcCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999874 34455666667799999999988888888987 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
|++|++||||+++. +|++||+||||+||||+.|.+++++.++ |..| .+|+.+||+.|++
T Consensus 258 g~~G~~~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~ 316 (317)
T 4eg0_A 258 GCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSI-GIGY-SELVVKVLSLTLN 316 (317)
T ss_dssp TCCSEEEEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHTTC-
T ss_pred CCCceEEEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHhh
Confidence 99999999999985 6899999999999999999888877765 4566 5999999999875
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=424.75 Aligned_cols=301 Identities=23% Similarity=0.365 Sum_probs=250.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
.+|||+||+||.|+|||||+.||++|+++|++.||+|+.++++....+
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~-------------------------------- 49 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDL-------------------------------- 49 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGH--------------------------------
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhH--------------------------------
Confidence 358999999999999999999999999999999999998876421000
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
... ..++|+||+.+||.+|||+.+|++||.+|+||+|+++.++++++||..++++|+++|||+|++..+.+.+.....
T Consensus 50 -~~~-~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~ 127 (307)
T 3r5x_A 50 -IEK-AKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFD 127 (307)
T ss_dssp -HHH-TTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHH
T ss_pred -HHh-ccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHH
Confidence 011 137999999999999999999999999999999999999999999999999999999999999998875432211
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
+.. ..+||+||||..+++|.||.++++.+++.+.+.+++. ++..+|||+||+| +|++|.+++ +
T Consensus 128 ---~~~-----~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~--~~~~~lvee~i~G-~e~~v~v~~----g-- 190 (307)
T 3r5x_A 128 ---ELD-----KLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFE--WDSEVVIEKYIKG-EEITCSIFD----G-- 190 (307)
T ss_dssp ---HHH-----HHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEEET----T--
T ss_pred ---HHH-----hcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCCEEEECCcCC-EEEEEEEEC----C--
Confidence 111 2578999999999999999999999998877766554 4679999999997 999999983 2
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
.+++..++.. ...+|+|+.||..++ .... |+.++++..++++++|.+++++||++|+++|||++
T Consensus 191 --~~~~~~~~~~----------~~~~~~~~~~~~~~g-~~~~-p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~-- 254 (307)
T 3r5x_A 191 --KQLPIISIRH----------AAEFFDYNAKYDDAS-TIEE-VIELPAELKERVNKASLACYKALKCSVYARVDMMV-- 254 (307)
T ss_dssp --EECCCEEEEE----------EEEEETTEEEEEEEE-EEEE-ECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE--
T ss_pred --EEeeEEEEEc----------CCcccChhhcCCCCC-CeEe-cCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE--
Confidence 1233334432 345899999994333 2333 88999999999999999999999999999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
+ +|++||+|||++||||.+|+||.+++++|++|.+++.++|+.|++|.
T Consensus 255 ---------------~-~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~~~~ 302 (307)
T 3r5x_A 255 ---------------K-DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 302 (307)
T ss_dssp ---------------E-TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------E-CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHhH
Confidence 5 58899999999999999999999999999999999999999999874
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=431.63 Aligned_cols=345 Identities=22% Similarity=0.306 Sum_probs=256.6
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+||+||.|.|||||+.||++|+.+|++ .+|+|++|.+++++.|...... .. ...
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~~~~~~~~~~-------------~~------~~~ 60 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITNDGDWRKQNNI-------------TA------EIK 60 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECTTCCEEEECCC-------------CS------CCC
T ss_pred CCCcEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcCCCCEEecccc-------------cc------ccc
Confidence 357899999999999999999999999999974 8999999999987656432100 00 000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
..+.+. . ..+.. . ....+.. .+ ..++.+|+|||.+||.+||
T Consensus 61 ~~~~~~--~--~~~~~--------~----------~~~~~~~-----~~------------~~~~~~D~v~~~~~g~~~e 101 (364)
T 2i87_A 61 STDELH--L--ENGEA--------L----------EISQLLK-----ES------------SSGQPYDAVFPLLHGPNGE 101 (364)
T ss_dssp SGGGSC--G--GGSEE--------E----------CSSGGGG-----BC------------TTSSBCSEEEEECCCSSSC
T ss_pred cchhhc--c--ccccc--------c----------ccccccc-----cc------------ccccCCCEEEEeCCCCCCc
Confidence 000000 0 00000 0 0000000 00 0134579999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+|+||+|+++.++++|+||..+|++ |+++|||+|++..+.+.++.. ...+.+.++.+++ +||+||
T Consensus 102 d~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~~~-~~~~~~~~~~~~~-g~Pvvv 176 (364)
T 2i87_A 102 DGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQL---FEHRGLPQLPYISFLRSEYEK-YEHNILKLVNDKL-NYPVFV 176 (364)
T ss_dssp TTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHH---HHHHTCCCCCEEEEEHHHHHH-HHHHHHHHHHHHC-CSSEEE
T ss_pred CHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEechhhcc-cchhHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 899999999999887643210 0001244555678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+.+++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 177 KP~~g~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~I~G~--------------- 219 (364)
T 2i87_A 177 KPANLGSSVGISKCNNEAELKE---GIKEAFQF-------------------DRKLVIEQGVNAR--------------- 219 (364)
T ss_dssp EESSCSSCTTCEEESSHHHHHH---HHHHHHTT-------------------CSEEEEEECCCCE---------------
T ss_pred EeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCeEEEEeCccCe---------------
Confidence 9999999999999999998875 66666544 5789999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.+++++.. . +.+..++....+||+|+.||..|.+..++|++ +++++.+++++++.+++++|
T Consensus 220 ----------E~~v~vl~~~~~-~-~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~---l~~~~~~~i~~~a~~~~~al 284 (364)
T 2i87_A 220 ----------EIEVAVLGNDYP-E-ATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD---LDEDVQLTLRNMALEAFKAT 284 (364)
T ss_dssp ----------EEEEEEEESSSC-E-ECCCEEECCSCCC-----------CCEESSCS---SCHHHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEEEEcCCCc-E-EeeeEEEecCCCcCCHHHcccCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHc
Confidence 999999987532 2 34455665556799999999877777788887 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|+.|++||||+++. +|++|||||||+||+|++|.+++++.+. |..| .+++.++|+.|++|+
T Consensus 285 g~~G~~~vD~~~~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~al~~~ 345 (364)
T 2i87_A 285 DCSGLVRADFFVTE-DNQIYINETNAMPGFTAFSMYPKLWENM-GLSY-PELITKLIELAKERH 345 (364)
T ss_dssp TCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEec-CCCEEEEEEeCCCCCCchhHHHHHHHHh-CCCH-HHHHHHHHHHHHHhh
Confidence 99999999999985 6899999999999999999887777765 5556 588999999999874
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=430.66 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=247.4
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
..++||+|||||.|.||||||.||++|+++|+ +|+|++|++++++.|...... ..+
T Consensus 18 ~~~~~v~vl~gG~s~E~~vSl~S~~~v~~al~---g~~v~~i~~~~~~~~~~~~~~---------------------~~~ 73 (367)
T 2pvp_A 18 GSHMEFCVLFGGASFEHEISIVSAIALKGVLK---DRIKYFIFLDENHHFYLIEES---------------------NMH 73 (367)
T ss_dssp --CCCEEEEEECSSTTHHHHHHHHHHHHHHHG---GGEEEEEEECTTCCEEECCGG---------------------GCS
T ss_pred ccCCEEEEEECCCCcchhhhHHHHHHHHHHhC---CCeEEEEEECCCCCEEecccc---------------------ccc
Confidence 45679999999999999999999999999996 899999999997666432100 000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhc--CCcEEEEecCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKE--NQATVFIAVHGGI 646 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dvvf~~~hG~~ 646 (953)
... ++.. .. +. +... .+....... .+ .+ ..+ .+|+|||++||.+
T Consensus 74 ~~~-~~~~--~~-~~-------~~~~-------~~~~~~~~~-----~~---------~~--~~~~~~~D~v~~~lhg~~ 119 (367)
T 2pvp_A 74 SKY-FAQI--KE-KK-------LPPL-------ILTHNGLLK-----NS---------FL--GAKIIELPLVINLVHGGD 119 (367)
T ss_dssp HHH-HHTG--GG-SC-------CCCB-------EEETTEEEE-----EE---------TT--EEEEEECCSEEECCCSTT
T ss_pred hhh-hccc--cc-cc-------cccc-------cccCcceec-----cc---------cc--cccccCCCEEEEcCCCCC
Confidence 000 0000 00 00 0000 000000000 00 00 012 4799999999999
Q ss_pred CCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE
Q 002207 647 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726 (953)
Q Consensus 647 GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Pl 726 (953)
||||++|++||.+|+||+|+++.++++||||..||++ |+++|||+|++..+.+.++. + +.+ .+.+ +||+
T Consensus 120 gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~-----~-~~~-~~~l-g~Pv 188 (367)
T 2pvp_A 120 GEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLY---AKDLGIKTLDYVLLNEKNRA-----N-ALD-LMNF-NFPF 188 (367)
T ss_dssp TTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHH---HHHHTCBCCCCEEECTTTGG-----G-HHH-HCCS-CSCE
T ss_pred ccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---HHHCCcCCCCEEEEeCCchH-----H-HHH-Hhcc-CCCE
Confidence 9999999999999999999999999999999999999 99999999999998765421 1 223 4678 6999
Q ss_pred EEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC-ccccccccccccc
Q 002207 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKN 805 (953)
Q Consensus 727 vVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~ 805 (953)
||||+++++|.||++|++.++|.. +++.++.+ +..+|||+||+| +
T Consensus 189 vVKP~~g~ss~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlVEe~I~G~~------------ 234 (367)
T 2pvp_A 189 IVKPSNAGSSLGVNVVKEEKELIY---ALDSAFEY-------------------SKEVLIEPFIQGVK------------ 234 (367)
T ss_dssp EEEESSCCTTTTCEEESSTTSHHH---HHHHHTTT-------------------CSCEEEEECCTTCE------------
T ss_pred EEEECCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEeCCCCCc------------
Confidence 999999999999999999999885 67766544 578999999999 6
Q ss_pred chhhhhcCCCceeE---EEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHH
Q 002207 806 ADRLMWKGNSRWVE---ITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIE 882 (953)
Q Consensus 806 ~~~~~~~g~~~~~E---itv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~ 882 (953)
| ++|.+ +|... +.+. ++....+||+|+.||..+.+..++|++ +++++.++++++|.
T Consensus 235 -------------E~svi~v~v---~g~~~-~~~~-ei~~~~~~~d~~~ky~~g~~~~~~Pa~---l~~~~~~~i~~~a~ 293 (367)
T 2pvp_A 235 -------------EYNLAGCKI---KKDFC-FSYI-EEPNKQEFLDFKQKYLDFSRNKAPKAS---LSNALEEQLKENFK 293 (367)
T ss_dssp -------------EEEEEEEEE---TTEEE-EEEE-EETTTTEEECCCCSSCCSCCCSCCCCC---CCHHHHHHHHHHHH
T ss_pred -------------eeeEEEEEE---CCEEE-EEEE-EEecCCceEcccccccCCCeeEEecCC---CCHHHHHHHHHHHH
Confidence 8 66776 33332 2232 565566799999999987766788887 68999999999999
Q ss_pred HHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHH-Hhhcc
Q 002207 883 LIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL-GSERF 952 (953)
Q Consensus 883 ~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~-a~~r~ 952 (953)
+++++|||.|++||||+++ +|++|||||||+||+|+.|.++ .| .+++.+|+.. +++|.
T Consensus 294 ~~~~aLg~~G~~~vDf~~~--~g~~~vlEiN~rpg~t~~s~~p---------~~-~~l~~~li~~~~~~~~ 352 (367)
T 2pvp_A 294 KLYSDLFDGAIIRCDFFVI--ENEVYLNEINPIPGSLANYLFD---------DF-KTTLENLAQSLPKTPK 352 (367)
T ss_dssp HHHTTTSTTCCEEEEEEEE--TTEEEEEEEESSCGGGGGGGSS---------SH-HHHHHHHHHHCC----
T ss_pred HHHHHcCCCCEEEEEEEEE--CCeEEEEEEeCCCCCCcccccC---------CH-HHHHHHHHhCccccCC
Confidence 9999999999999999998 5899999999999999998554 35 4888899888 76664
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=392.58 Aligned_cols=300 Identities=27% Similarity=0.427 Sum_probs=243.2
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
+++||+||+||.|.||+||+.||..|+.+|++ .+|+|+++.++..
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~---------------------------------- 46 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNEK---------------------------------- 46 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSSG----------------------------------
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccCc----------------------------------
Confidence 47899999999999999999999999999975 7899887644210
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.... . ..+.+|+||+.+||.+|||
T Consensus 47 ~~~~------------------------------~--------------------------~~~~~D~v~~~~~~~~ge~ 70 (307)
T 3r5x_A 47 MDLI------------------------------E--------------------------KAKDIDFALLALHGKYGED 70 (307)
T ss_dssp GGHH------------------------------H--------------------------HTTTCSEEEECCCSHHHHS
T ss_pred hhHH------------------------------H--------------------------hccCCCEEEEeCCCCCCcH
Confidence 0000 0 0023699999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
+.+|++||.+|+||+|+++.++++|+||..++++ |+++|||||++..+.+.+... ..+.+.+ +||+|||
T Consensus 71 ~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~---l~~~Gip~p~~~~~~~~~~~~-------~~~~~~~-~~P~vvK 139 (307)
T 3r5x_A 71 GTVQGTLESLGIPYSGSNMLSSGICMDKNISKKI---LRYEGIETPDWIELTKMEDLN-------FDELDKL-GFPLVVK 139 (307)
T ss_dssp SHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEESSSCCC-------HHHHHHH-CSSEEEE
T ss_pred HHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEeChhhhh-------HHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 999999999999998754211 1134567 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|..+++|.||+++++.+++.. +++.++.+ +..+|||+||+|+
T Consensus 140 P~~~~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvee~i~G~---------------- 181 (307)
T 3r5x_A 140 PNSGGSSVGVKIVYDKDELIS---MLETVFEW-------------------DSEVVIEKYIKGE---------------- 181 (307)
T ss_dssp ECC----CCCEEECSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE----------------
T ss_pred eCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCCEEEECCcCCE----------------
Confidence 999999999999999998885 56666554 5789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccc-cCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky-~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.++++. ..+..++....++|+|+.|| .+|.... |++ ++++..+++++.+.+++++|
T Consensus 182 ---------e~~v~v~~g~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~--p~~---l~~~~~~~i~~~a~~~~~~l 242 (307)
T 3r5x_A 182 ---------EITCSIFDGK-----QLPIISIRHAAEFFDYNAKYDDASTIEE--VIE---LPAELKERVNKASLACYKAL 242 (307)
T ss_dssp ---------EEEEEEETTE-----ECCCEEEEEEEEEETTEEEEEEEEEEEE--ECC---CCHHHHHHHHHHHHHHHHHT
T ss_pred ---------EEEEEEECCE-----EeeEEEEEcCCcccChhhcCCCCCCeEe--cCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999998652 23333444456789999999 4444332 665 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|++|++++||+++ +|++||+|||++||||+.|.++.++.+. |..| .+++.+||+.|++|.
T Consensus 243 g~~G~~~vD~~~~--~g~~~vlEiN~rpg~~~~s~~~~~~~~~-G~~~-~~li~~ll~~a~~~~ 302 (307)
T 3r5x_A 243 KCSVYARVDMMVK--DGIPYVMEVNTLPGMTQASLLPKSADAA-GIHY-SKLLDMIIETSLRVR 302 (307)
T ss_dssp TCCSEEEEEEEEE--TTEEEEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEE--CCeEEEEEEcCCCCCCccCHHHHHHHHc-CCCH-HHHHHHHHHHHHHhH
Confidence 9999999999998 4899999999999999999877777765 4455 599999999999873
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=384.57 Aligned_cols=300 Identities=26% Similarity=0.382 Sum_probs=249.8
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|||+||+||.|.||++|+.||+.++++|++.||+|+.++.+ +..| . ..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~-~~~~----------------~----~~---------- 50 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDV----------------T----QL---------- 50 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT-TSCG----------------G----GT----------
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC-chHH----------------H----Hh----------
Confidence 479999999999999999999999999999999999876543 1100 0 00
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh--
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES-- 234 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~-- 234 (953)
....+|+||+.+||.+|||+.++++++.+|+||+|+++.++.+++||..++++|+++|||+|++..+.+.+ ...
T Consensus 51 ---~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~-~~~~~ 126 (306)
T 1iow_A 51 ---KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE-FEKGL 126 (306)
T ss_dssp ---TTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHHH-HHHCC
T ss_pred ---hccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchhh-hhccc
Confidence 01369999999999999999999999999999999999999999999999999999999999999886541 111
Q ss_pred --hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 235 --ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 235 --~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
.+.++. +..+||+||||..+++|.||.++++.+|+.+....++ .++..+|||+||+| +|++|.+++ |
T Consensus 127 ~~~~~~~~-----~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~--~~~~~~lvee~i~g-~e~~v~~~~---g 195 (306)
T 1iow_A 127 SDKQLAEI-----SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSG-PEFTVAILG---E 195 (306)
T ss_dssp CTHHHHHH-----HTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHT--TTCSEEEEEECCCC-CEEEEEEET---T
T ss_pred hhhhhhHH-----hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hhCCCEEEEeCcCC-EEEEEEEEC---C
Confidence 000122 1367899999999999999999999999876665543 25789999999997 999999993 2
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
.+++..++. . ...+++|+.+|..+. +.+.+|+.++++..+++++.+.+++++||+.|++++||+
T Consensus 196 -----~~~~~~~~~--~--------~~~~~~~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 259 (306)
T 1iow_A 196 -----EILPSIRIQ--P--------SGTFYDYEAKFLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 (306)
T ss_dssp -----EECCCEEEE--C--------SSSSSCHHHHHTCSC-CEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred -----CccceEEEE--e--------CCCeEchhheecCCC-eeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 133333332 1 346889998987654 567889999999999999999999999999999999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+ +++|++||+|||++||++.+|++|.+++++|+++.+++.++++.|
T Consensus 260 ~-----------------~~~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~~~a 305 (306)
T 1iow_A 260 L-----------------DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 (306)
T ss_dssp E-----------------CTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHTC
T ss_pred E-----------------cCCCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6 678899999999999999999999999999999999999998754
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=346.50 Aligned_cols=304 Identities=30% Similarity=0.476 Sum_probs=243.9
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchh
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 570 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 570 (953)
++||+|++||.|.||++|+.||..++.++++ .+|+++.+ +.+ + ..|.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~--~~~--------~----------~~~~------------ 48 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPV--DPK--------E----------VDVT------------ 48 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEE--CTT--------T----------SCGG------------
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEE--ecC--------c----------hHHH------------
Confidence 4689999999999999999999999999975 78888754 211 0 0000
Q ss_pred hHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCcc
Q 002207 571 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDG 650 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg 650 (953)
.+ ....+|+||+.+||.+|||+
T Consensus 49 --------~~--------------------------------------------------~~~~~d~v~~~~~~~~~e~~ 70 (306)
T 1iow_A 49 --------QL--------------------------------------------------KSMGFQKVFIALHGRGGEDG 70 (306)
T ss_dssp --------GT--------------------------------------------------TTTTEEEEEECCCSTTTSSS
T ss_pred --------Hh--------------------------------------------------hccCCCEEEEcCCCCCCcch
Confidence 00 01236999999999999999
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
.++++||.+|+||+|+++.++.+|+||..++++ |+++|||+|++..+.+.+.... ....+.++.+++ +||+||||
T Consensus 71 ~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~---l~~~gi~~p~~~~~~~~~~~~~-~~~~~~~~~~~~-~~p~vvKP 145 (306)
T 1iow_A 71 TLQGMLELMGLPYTGSGVMASALSMDKLRSKLL---WQGAGLPVAPWVALTRAEFEKG-LSDKQLAEISAL-GLPVIVKP 145 (306)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEEEHHHHHHC-CCTHHHHHHHTT-CSSEEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCeEEEchhhhhcc-chhhhhhHHhcc-CCCEEEEe
Confidence 999999999999999999999999999999999 8999999999998865421000 000122255678 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
..+++|.||.++++.+++.. +++..+.+ ...+|||+||+|+
T Consensus 146 ~~g~~~~gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvee~i~g~----------------- 186 (306)
T 1iow_A 146 SREGSSVGMSKVVAENALQD---ALRLAFQH-------------------DEEVLIEKWLSGP----------------- 186 (306)
T ss_dssp TTCCTTTTCEEESSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCCC-----------------
T ss_pred CCCCCCCCEEEeCCHHHHHH---HHHHHHhh-------------------CCCEEEEeCcCCE-----------------
Confidence 99999999999999999885 45554322 5789999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL 890 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~ 890 (953)
|++|.++++ . +.+.+++...+.+|+|+.+|..|.....+|++ ++++..+++++.+.+++++||+
T Consensus 187 --------e~~v~~~~g--~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg~ 250 (306)
T 1iow_A 187 --------EFTVAILGE--E---ILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG---LEASQEANLQALVLKAWTTLGC 250 (306)
T ss_dssp --------EEEEEEETT--E---ECCCEEEECSSSSSCHHHHHTCSCCEEESSCC---CCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------EEEEEEECC--C---ccceEEEEeCCCeEchhheecCCCeeEEcCCC---CCHHHHHHHHHHHHHHHHHcCC
Confidence 999999943 2 34555655566789999999877777788886 6889999999999999999999
Q ss_pred cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 891 EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 891 ~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
.|+++|||+++. +|++||+|||++||++.+|.++.++.+. |..| .+++.++++.|
T Consensus 251 ~G~~~vD~~~~~-~g~~~~iEiN~rpg~~~~s~~p~~~~~~-G~~~-~~~~~~~~~~a 305 (306)
T 1iow_A 251 KGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQA-GMSF-SQLVVRILELA 305 (306)
T ss_dssp CSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHTC
T ss_pred ceEEEEEEEEcC-CCCEEEEEecCCCCCCCCCHHHHHHHHc-CCCH-HHHHHHHHHhc
Confidence 999999999985 6899999999999999998777777665 4455 47777787754
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-31 Score=312.27 Aligned_cols=296 Identities=15% Similarity=0.126 Sum_probs=214.4
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--e--cC--------
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--L--QG-------- 228 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~--~~-------- 228 (953)
..++|+|+|. +|..+|++.++++|+.+|+||+|+++.++.++.||..+|++|+++|||+|++.. + ..
T Consensus 137 ~~~vdaV~pG-~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~ 215 (587)
T 3jrx_A 137 RIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQG 215 (587)
T ss_dssp HTTCSEEECC-SSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CC
T ss_pred HhCCCEEEeC-CCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccc
Confidence 3479999998 788999999999999999999999999999999999999999999999999865 0 00
Q ss_pred -------------CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEecc
Q 002207 229 -------------SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELF 295 (953)
Q Consensus 229 -------------~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEef 295 (953)
.-.+.+++.++.+ .++||+||||..+++|+||.+|++.+|+.+....+.....+..++||+|
T Consensus 216 ~~~~~~~~~~~~~~v~s~eea~~~a~-----~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEey 290 (587)
T 3jrx_A 216 KRISVPEDVYDKGCVKDVDEGLEAAE-----RIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKL 290 (587)
T ss_dssp CCCCCCHHHHHTTSCCSHHHHHHHHH-----HHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEEC
T ss_pred cccccchhhccccccCCHHHHHHHHH-----hcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEe
Confidence 0011122333332 3678999999999999999999999988776666554444678999999
Q ss_pred CCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHH
Q 002207 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGA 374 (953)
Q Consensus 296 I~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a 374 (953)
|+|.+|++|.++.++.| ..+.+...+.. ++.+..|+ ....|+. +++++.+++++.|
T Consensus 291 I~g~rei~V~vl~D~~G---~vv~l~~rd~s--------------iqrr~qk~------ie~aPa~~l~~~~~~~i~~~A 347 (587)
T 3jrx_A 291 AQHARHLEVQILADQYG---NAVSLFGRDCS--------------IQRRHQKI------VEEAPATIAPLAIFEFMEQCA 347 (587)
T ss_dssp CCSCEEEEEEEEECSSS---CEEEEEEEEEE--------------EESSSCEE------EEEESCCSSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEcCCC---CEEEEeeeecc--------------ccccccce------eEecCCCCCCHHHHHHHHHHH
Confidence 99879999999986433 23333322111 22222333 3347888 7999999999999
Q ss_pred HHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 375 ~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
.+++++||++|+++|||++ +++|++||+||||+++.+ .|.....+|+++ +..+|+.
T Consensus 348 ~~~a~alGy~G~~~VEfl~-----------------d~dG~~yflEINpRl~~e----~~vte~~tGvdl---v~~~lri 403 (587)
T 3jrx_A 348 IRLAKTVGYVSAGTVEYLY-----------------SQDGSFHFLELNPRLQVE----HPCTEMIADVNL---PAAQLQI 403 (587)
T ss_dssp HHHHHHHTCCEEEEEEEEE-----------------CSSSCEEEEEEESSCCTT----HHHHHHHHTCCH---HHHHHHH
T ss_pred HHHHHHcCCcceeEEEEEE-----------------eCCCCEEEEEEeCCCCCc----cceeccccCCCH---HHHHHHH
Confidence 9999999999999999987 568899999999999854 355556789975 4455666
Q ss_pred HhhhCCC--------------------CC----CCCCcceecccccccCCCccccccCCCceEEEEecCCCcccceecc
Q 002207 455 ACSRFPN--------------------LA----SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSL 509 (953)
Q Consensus 455 a~~r~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~ 509 (953)
|+..--. +. .+.-.+++|++|+.+++|...|.|++|+++-+.+.+|.......+.
T Consensus 404 a~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 482 (587)
T 3jrx_A 404 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 482 (587)
T ss_dssp HTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECC
T ss_pred HCCCCcccchhcccccccccccccccccccccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccc
Confidence 6543100 00 0123479999999999999999999999988777777655433333
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=314.95 Aligned_cols=296 Identities=15% Similarity=0.129 Sum_probs=203.7
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--e--cC--------
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--L--QG-------- 228 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~--~~-------- 228 (953)
..++|+|+|. +|..+|++.++++|+.+|+||+|+++.++.++.||..+|++|+++|||+|++.. + ..
T Consensus 121 ~~~~daI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~ 199 (540)
T 3glk_A 121 RIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQG 199 (540)
T ss_dssp HTTCSEEECC-SSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC---
T ss_pred HhCCCEEEeC-CCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccccccccccccccc
Confidence 3479999998 788889999999999999999999999999999999999999999999999865 0 00
Q ss_pred -------------CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEecc
Q 002207 229 -------------SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELF 295 (953)
Q Consensus 229 -------------~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEef 295 (953)
.-...+++.++.+ .++||+||||..+++|+||.+|++.+|+.+....+.....+..++||+|
T Consensus 200 ~~~~~~~~~~~~~~v~s~~ea~~~a~-----~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~ 274 (540)
T 3glk_A 200 KRISVPEDVYDKGCVKDVDEGLEAAE-----RIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKL 274 (540)
T ss_dssp -CCCCCHHHHHHTSCCSHHHHHHHHH-----HHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEEC
T ss_pred cccccccccccccCcCCHHHHHHHHH-----hcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEe
Confidence 0011122333332 2678999999999999999999999988776666554444678999999
Q ss_pred CCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHH
Q 002207 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGA 374 (953)
Q Consensus 296 I~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a 374 (953)
|+|++|++|.+++++.| ..+.+...+.. ++.+..|+. ...|+. +++++.+++++.|
T Consensus 275 I~g~rei~V~vl~d~~G---~vv~l~~rd~s--------------~qr~~~k~i------e~~Pa~~l~~~~~~~l~~~a 331 (540)
T 3glk_A 275 AQHARHLEVQILADQYG---NAVSLFGRDCS--------------IQRRHQKIV------EEAPATIAPLAIFEFMEQCA 331 (540)
T ss_dssp CSSEEEEEEEEEECTTS---CEEEEEEEEEE--------------EC---CCSE------EEESCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEcCCC---CEEEEeceeee--------------eeecccceE------EecCCCCCCHHHHHHHHHHH
Confidence 99779999999986433 23333222111 223333432 346887 6999999999999
Q ss_pred HHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 375 ~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
.+++++||++|+++|||++ +++|++||+||||+++.+ .|.....+|+++ +..+++.
T Consensus 332 ~~~~~alG~~G~~~VEf~~-----------------d~dg~~~~lEiNpR~~~~----~~vte~~tGvdl---~~~~lr~ 387 (540)
T 3glk_A 332 IRLAKTVGYVSAGTVEYLY-----------------SQDGSFHFLELNPRLQVE----HPCTEMIADVNL---PAAQLQI 387 (540)
T ss_dssp HHHHHHHTCCEEEEEEEEE-----------------ETTSCEEEEEEECSCCTT----HHHHHHHHTCCH---HHHHHHH
T ss_pred HHHHHHcCCccceEEEEEE-----------------cCCCCEEEEEEECCCCCc----chhhHhHhCCCH---HHHHHHH
Confidence 9999999999999999986 567899999999999954 255556789975 4455666
Q ss_pred HhhhCCC--------------------CCC----CCCcceecccccccCCCccccccCCCceEEEEecCCCcccceecc
Q 002207 455 ACSRFPN--------------------LAS----YNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSL 509 (953)
Q Consensus 455 a~~r~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~ 509 (953)
|+..--. +.. +.-.+|+|++|+.+++|...|.|++++++-+.+.+|.......+.
T Consensus 388 a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 466 (540)
T 3glk_A 388 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 466 (540)
T ss_dssp HTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC
T ss_pred HCCCCcccccccccccccccccccccccccccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEecc
Confidence 6543110 000 123469999999999999999999999887776776655433333
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=296.32 Aligned_cols=353 Identities=16% Similarity=0.181 Sum_probs=246.8
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 154 (953)
.+||+|+.+|. .|..+++++++.||+++.++-+.+....... . .|..+.+.+. ...+....
T Consensus 6 ~~kiLI~g~g~---------~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~----~----ad~~~~i~~~~~~~~~~d~~ 68 (446)
T 3ouz_A 6 IKSILIANRGE---------IALRALRTIKEMGKKAICVYSEADKDALYLK----Y----ADASICIGKARSSESYLNIP 68 (446)
T ss_dssp CCEEEECCCHH---------HHHHHHHHHHHTTCEEEEEEEGGGTTCTHHH----H----SSEEEEEECCTTTTGGGCHH
T ss_pred cceEEEECCCH---------HHHHHHHHHHHcCCEEEEEEcCcccccchHh----h----CCEEEEcCCCCccccccCHH
Confidence 35899987764 3889999999999999988765542211000 0 0000000000 00000111
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCcc
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEV 231 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~ 231 (953)
.+.+. ...++|+|+|.. |...|+..++..|+.+|+|++|+++.++.++.||..+|++|+++|||+|++. .+.+.+
T Consensus 69 ~l~~~~~~~~~d~i~p~~-g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~- 146 (446)
T 3ouz_A 69 AIIAAAEIAEADAIFPGY-GFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAE- 146 (446)
T ss_dssp HHHHHHHHHTCSEEECCS-STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHH-
T ss_pred HHHHHHHHhCcCEEEECC-cccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHH-
Confidence 11111 124799999984 7778999999999999999999999999999999999999999999999986 444432
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEEEE
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
++.++.++ ++||+||||..+++|.||.+|++.+|+.+....+.... .+..++||+||+|.+|+++.++
T Consensus 147 ---e~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 218 (446)
T 3ouz_A 147 ---AAKKLAKE-----IGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVI 218 (446)
T ss_dssp ---HHHHHHHH-----HCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ---HHHHHHHH-----hCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEE
Confidence 23333332 67899999999999999999999998776655443210 1578999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
.++.| ..+.+...+..+ .....+ .....|+ .+++++.+++++.+.+++++||++|+
T Consensus 219 ~d~~g---~~~~~~~~~~~~--------------~~~~~~------~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~ 275 (446)
T 3ouz_A 219 GDSFG---NVIHVGERDCSM--------------QRRHQK------LIEESPAILLDEKTRTRLHETAIKAAKAIGYEGA 275 (446)
T ss_dssp ECTTS---CEEEEEEEEEEE--------------EETTEE------EEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EcCCC---CEEEEeeceeee--------------eecCce------EEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 75433 233322221111 111111 2335687 59999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCC-CCC
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL-ASY 465 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~-~~~ 465 (953)
+++||++ +++|++||+||||+|+.+ .|.....+|+++ ++.+++.++...... ...
T Consensus 276 ~~ve~~~-----------------~~~g~~~~iEiNpR~~g~----~~~~~~~~G~dl---~~~~~~~~~G~~l~~~~~~ 331 (446)
T 3ouz_A 276 GTFEFLV-----------------DKNLDFYFIEMNTRLQVE----HCVSEMVSGIDI---IEQMIKVAEGYALPSQESI 331 (446)
T ss_dssp EEEEEEE-----------------CTTCCEEEEEEESSCCTT----HHHHHHHHCCCH---HHHHHHHHTTCCCCCGGGC
T ss_pred eEEEEEE-----------------eCCCCEEEEEeECCCCCc----ceeeeeeeCCCH---HHHHHHHHCCCCCCcCCCC
Confidence 9999987 567889999999999854 344555779975 555666666653221 112
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...++++++|+.++++ ..|.+..+.++-.-..|+....
T Consensus 332 ~~~g~ai~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr 369 (446)
T 3ouz_A 332 KLNGHSIECRITAEDS-KTFLPSPGKITKYIPPAGRNVR 369 (446)
T ss_dssp CCCSEEEEEEEESBCT-TTCCBCCEECSEEECCCSTTEE
T ss_pred CcceEEEEEEeeccCC-CccCCCCcEEeEEecCCCCCEE
Confidence 2346999999999999 7888888887666656665543
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=280.39 Aligned_cols=295 Identities=16% Similarity=0.100 Sum_probs=208.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
|++.+||+||.||. +|+.+++++++.||+|+.++ +.+..... ..+.. .... ..+..
T Consensus 21 mm~~~~I~ilGgG~---------lg~~l~~aa~~lG~~v~~~d-~~~~p~~~------~ad~~---~~~~----~~~~d- 76 (403)
T 3k5i_A 21 MWNSRKVGVLGGGQ---------LGRMLVESANRLNIQVNVLD-ADNSPAKQ------ISAHD---GHVT----GSFKE- 76 (403)
T ss_dssp CCSCCEEEEECCSH---------HHHHHHHHHHHHTCEEEEEE-STTCTTGG------GCCSS---CCEE----SCTTC-
T ss_pred CCCCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEE-CCCCcHHH------hcccc---ceee----cCCCC-
Confidence 44457999999994 59999999999999999887 55422111 11100 0000 00000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+....+..++|++.+-+.-. +..+-..|+. |+| +|+++.++.+++||..+|++|+++|||+|++..+...+ .
T Consensus 77 ~~~l~~~a~~~d~i~~e~e~~---~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~ 149 (403)
T 3k5i_A 77 REAVRQLAKTCDVVTAEIEHV---DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENT--P 149 (403)
T ss_dssp HHHHHHHHTTCSEEEESSSCS---CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCC--H
T ss_pred HHHHHHHHHhCCEEEECCCCC---CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCC--H
Confidence 112223345789988754321 3345567788 998 89999999999999999999999999999999987211 1
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
+++.++.+ .++||+||||+.++ +|+|+.++++.+|+.+....+ .+..+|||+||+|++|++|.++++++
T Consensus 150 ~~~~~~~~-----~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~E~sv~v~~~~~- 219 (403)
T 3k5i_A 150 AELAKVGE-----QLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL----KDRPLYAEKWAYFKMELAVIVVKTKD- 219 (403)
T ss_dssp HHHHHHHH-----HHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT----TTSCEEEEECCCEEEEEEEEEEECSS-
T ss_pred HHHHHHHH-----HhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc----CCCcEEEecCCCCCeEEEEEEEEcCC-
Confidence 12333332 25789999999998 999999999999977655442 25789999999955999999997532
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+ ..+.++.+... .+.+ ......|+. +++++.++++++|.+++++||++|+++|||
T Consensus 220 --g-~~~~p~~~~~~----------~~g~-----------~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~ 275 (403)
T 3k5i_A 220 --E-VLSYPTVETVQ----------EDSI-----------CKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEM 275 (403)
T ss_dssp --C-EEECCCEEEEE----------ETTE-----------EEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred --C-EEEeCCeeeEE----------eCCE-----------EEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 2 33344433221 1111 123457998 999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++|++||+||||+||.+.+.. ..++|+|. +...++.++.
T Consensus 276 ~~-----------------~~dg~~~v~EiNpR~~~sg~~~----~~~~~~s~---~~~~~ra~~G 317 (403)
T 3k5i_A 276 FL-----------------LEDDSIMLCEIASRIHNSGHYT----IEGCALSQ---FDAHLRAILD 317 (403)
T ss_dssp EE-----------------ETTSCEEEEEEESSCCGGGTTH----HHHBSSCH---HHHHHHHHTT
T ss_pred EE-----------------eCCCcEEEEEeecCCCCCCcee----eeecCCCH---HHHHHHHHcC
Confidence 87 5688999999999999764322 24568875 4444554444
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=276.17 Aligned_cols=302 Identities=16% Similarity=0.135 Sum_probs=202.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++|++|++||... ..|++++++.||+|+.++-+.+......... +.-+.+.... ......+.
T Consensus 5 ~k~l~Il~~~~~~---------~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~--------d~~~~~~~~~-d~~~~~~~ 66 (425)
T 3vot_A 5 NKNLAIICQNKHL---------PFIFEEAERLGLKVTFFYNSAEDFPGNLPAV--------ERCVPLPLFE-DEEAAMDV 66 (425)
T ss_dssp CCEEEEECCCTTC---------CHHHHHHHHTTCEEEEEEETTSCCCCSCTTE--------EEEEEECTTT-CHHHHHHH
T ss_pred CcEEEEECCChhH---------HHHHHHHHHCCCEEEEEECCCcccccCHhhc--------cEEEecCCCC-CHHHHHHH
Confidence 3679999988753 3578999999999988765443111000000 0000000000 00000011
Q ss_pred HHh--hccCcCEEEEcCCCCCCCch--HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccc
Q 002207 157 AEH--LAANVDIVFPTIHGRFGEDG--GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN 232 (953)
Q Consensus 157 ~~~--~~~~~D~vf~~lhG~~GEdg--~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~ 232 (953)
+.. ....+|.|++.. |.. ....+.|.+|+| |+++.++.+|+||..+|++|+++|||||++..+.+.++
T Consensus 67 ~~~~~~~~~id~V~~~~-----e~~~~~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~- 138 (425)
T 3vot_A 67 VRQTFVEFPFDGVMTLF-----EPALPFTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLAD- 138 (425)
T ss_dssp HHHHHHHSCCSEEECCC-----GGGHHHHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSGGG-
T ss_pred HHHhhhhcCCCEEEECC-----chhHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcHHH-
Confidence 111 234799998753 333 245677999999 89999999999999999999999999999999876542
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---------CCCCcEEEeccCCCCeEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---------GIDDRVVVELFLEGGSEFT 303 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---------~~~~~vlVEefI~Gg~E~t 303 (953)
+.. ..++||+||||..+++|+||.+|++.+|+.++..++... ..+..++||+||+| +|++
T Consensus 139 ---~~~-------~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~s 207 (425)
T 3vot_A 139 ---LEN-------RKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFA 207 (425)
T ss_dssp ---GTT-------CCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEE
T ss_pred ---HHH-------hhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEE
Confidence 111 247899999999999999999999999987665543221 13568999999998 9999
Q ss_pred EEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 002207 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGL 383 (953)
Q Consensus 304 v~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~ 383 (953)
|.++.. ++...++...+... ....+.. ...+.+|+.++++..+++++.+.+++++||+
T Consensus 208 v~~~~~----~g~~~~~~~~~~~~----------------~~~~~~~--~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~ 265 (425)
T 3vot_A 208 IETLSI----QGNVHVLSIGYKGN----------------SKGPFFE--EGVYIAPAQLKEETRLAIVKEVTGAVSALGI 265 (425)
T ss_dssp EEEEEE----TTEEEEEEEEEEEC----------------CCCSBCC--CCEEEESCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEe----CCcEEEEeEEEEec----------------cCCCccc--cceEeecccCCHHHHHHHHHHHHHHHHHcCC
Confidence 999853 23344433332210 1112221 2456789999999999999999999999999
Q ss_pred C-CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 384 C-DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 384 ~-G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+ |++++||++ +++|++||+|||++||.+..+.+ ....++|+|+. +.+++.++..
T Consensus 266 ~~G~~~ve~~~-----------------~~dG~~~~iEiN~R~gG~~~~~~-l~~~~~G~d~~---~~~i~~alg~ 320 (425)
T 3vot_A 266 HQGPAHTELRL-----------------DKDGTPYVIEVGARIGGSGVSHY-IVKESTGINFM---QLVLQNALKP 320 (425)
T ss_dssp CSEEEEEEEEE-----------------CTTCCEEEEEEESSCGGGGHHHH-HHHHHHCCCHH---HHHHHHHHSC
T ss_pred CcceEEEEEEE-----------------EeCCcEEEEEEecCCCCCCchHH-HHHHHHCCCHH---HHHHHHHCCC
Confidence 6 999999986 68899999999999987654322 23346799864 4556677653
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=279.15 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=228.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+|+.+|. .|..+++++++.||+|+.++.+.+........ .+..+.+.+. ...+.....
T Consensus 2 k~ilI~g~g~---------~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~--------ad~~~~i~~~~~~~~~~d~~~ 64 (451)
T 2vpq_A 2 KKVLIANRGE---------IAVRIIRACRDLGIQTVAIYSEGDKDALHTQI--------ADEAYCVGPTLSKDSYLNIPN 64 (451)
T ss_dssp CEEEECCCHH---------HHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHH--------SSEEEEEECSSGGGTTTCHHH
T ss_pred ceEEEeCCCH---------HHHHHHHHHHHcCCEEEEEecccccccchhhh--------CCEEEEcCCCCccccccCHHH
Confidence 4799887663 38889999999999999887655422110000 0000000000 001111111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 65 l~~~~~~~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~-- 141 (451)
T 2vpq_A 65 ILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVS-- 141 (451)
T ss_dssp HHHHHHHTTCSEEECC-SSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHH--
T ss_pred HHHHHHHcCCCEEEEC-CCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHH--
Confidence 1111 13579999998 46778899999999999999999999999999999999999999999999976 554432
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++++. ++||+||||..+++|.||.+|++.+|+.+....++.. . .+..++||+||+|++|+++.++.
T Consensus 142 --~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 2vpq_A 142 --EAKKIAKK-----IGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVG 214 (451)
T ss_dssp --HHHHHHHH-----HCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEE
T ss_pred --HHHHHHHh-----cCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEE
Confidence 23333322 5789999999999999999999999887666544321 0 24689999999976799999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+++| ..+.+. +... .+..++. ......|+. +++++.+++++.+.+++++||++|++
T Consensus 215 ~~~G---~~~~~~--~~~~---------------~~~~~~~---~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~ 271 (451)
T 2vpq_A 215 DSYG---NVIHLG--ERDC---------------TIQRRMQ---KLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAG 271 (451)
T ss_dssp CTTS---CEEEEE--EEEE---------------EEEETTE---EEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCC---CEEEEe--cccc---------------chhcccc---ceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceE
Confidence 5432 232221 1110 0111111 123446887 99999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-- 464 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~-- 464 (953)
++||++ + ++|++||+|||++|+.+ ++....++|+++.+ .+++.++........
T Consensus 272 ~ve~~~-----------------~~~~g~~~viEiN~R~~~~----~~~~~~~~g~dl~~---~~~~~~~G~~~~~~~~~ 327 (451)
T 2vpq_A 272 TIEFIY-----------------DLNDNKFYFMEMNTRIQVE----HPVTEMVTGIDLVK---LQLQVAMGDVLPYKQED 327 (451)
T ss_dssp EEEEEE-----------------ETTTTEEEEEEEECSCCTT----HHHHHHHHCCCHHH---HHHHHHTTCCCSCCGGG
T ss_pred EEEEEE-----------------ECCCCCEEEEEeeCCCCCc----eehhhHHhCCCHHH---HHHHHHCCCCCCCcccc
Confidence 999986 5 67899999999999843 35555678997644 455566655322110
Q ss_pred CCCcceecccccccCCCccccccCCCce
Q 002207 465 YNSVSSHLPGRSSGSKPTEALNKREGIR 492 (953)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (953)
....++++.+++.+.++...+.+..+.+
T Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~p~~g~i 355 (451)
T 2vpq_A 328 IKLTGHAIEFRINAENPYKNFMPSPGKI 355 (451)
T ss_dssp CCCCSEEEEEEEESEEGGGTTEECCSBC
T ss_pred cCcCceEeeeEeeeeccccccCCCCCEE
Confidence 1112345555665554433344444443
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=304.85 Aligned_cols=352 Identities=15% Similarity=0.170 Sum_probs=239.7
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc---ccccCc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL---AQGFGS 152 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 152 (953)
+.+||+|+.+|. .|..+++++++.|++++.++-+.+........ .|..+.+... ...+..
T Consensus 3 ~~kkVLIagrGe---------ia~riiraa~elGi~vVav~s~~d~~s~~~~~--------ADe~~~ig~~~~~~~syld 65 (1150)
T 3hbl_A 3 QIKKLLVANRGE---------IAIRIFRAAAELDISTVAIYSNEDKSSLHRYK--------ADESYLVGSDLGPAESYLN 65 (1150)
T ss_dssp CCCEEEECCCHH---------HHHHHHHHHHHTTCEEEEEECGGGTTCGGGGT--------SSEEEECCTTSCTTGGGTC
T ss_pred CCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEEcCCcccchhhhh--------cceeeecCCCCCccccccC
Confidence 345888877653 27789999999999999887655422111000 1111111000 001111
Q ss_pred chhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCC
Q 002207 153 LSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGS 229 (953)
Q Consensus 153 ~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~ 229 (953)
...+.+. ...++|+|+|. +|...|+..++..|+.+|+||+|+++.++.++.||..+|++|+++|||+|++. .+.+.
T Consensus 66 ~~~Ii~~a~~~~~DaI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~ 144 (1150)
T 3hbl_A 66 IERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY 144 (1150)
T ss_dssp HHHHHHHHHHTTCSEEECT-TTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSS
T ss_pred HHHHHHHHHHhCCCEEEEC-CCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCH
Confidence 1122221 23479999998 67788999999999999999999999999999999999999999999999987 45443
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEE
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAI 305 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~ 305 (953)
+. +.++. ..++||+||||..+++|+||.+|++.+|+.+....+.... .+..++||+||+|.+|++|.
T Consensus 145 ee----a~~~a-----~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~ 215 (1150)
T 3hbl_A 145 EL----AKEFA-----EEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215 (1150)
T ss_dssp ST----TTTTG-----GGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEE
T ss_pred HH----HHHHH-----HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEE
Confidence 32 22222 2378999999999999999999999988776655433211 15689999999987899999
Q ss_pred EEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 002207 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 306 Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
++.++.|+ .+.+...... +... ........|+ .++++..++|.+.|.++++++|++
T Consensus 216 vl~d~~G~---vv~l~er~~s-----------------~qr~---~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~ 272 (1150)
T 3hbl_A 216 VIGDEHGN---IVHLFERDCS-----------------VQRR---HQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYV 272 (1150)
T ss_dssp EEECSSSC---EEEEEEEEEE-----------------EESS---SCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCC---EEEEEeeccc-----------------eecc---CceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99865432 2222211111 1111 1224456888 599999999999999999999999
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCC---
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN--- 461 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~--- 461 (953)
|.+++||++ +++ ++||+||||+++.+ .+.....+|+++ ++.+++.|+..-..
T Consensus 273 G~~~vEflv-----------------d~d-~~y~iEINpR~~g~----~~vte~~tGvDl---v~~~i~ia~G~~L~~~~ 327 (1150)
T 3hbl_A 273 NAGTVEFLV-----------------SGD-EFFFIEVNPRVQVE----HTITEMVTGIDI---VKTQILVAAGADLFGEE 327 (1150)
T ss_dssp EEEEEEEEE-----------------ETT-EEEEEEEECSCCTT----HHHHHHHHCCCH---HHHHHHHHTTCCTTSTT
T ss_pred ceEEEEEEE-----------------ECC-eEEEEEEeCCCCCC----cceeehhcCCCH---HHHHHHHHCCCCCCccc
Confidence 999999986 455 79999999999854 244455789975 56677777765221
Q ss_pred CCCCC-----CcceecccccccCCCccccccCCCceEEEEecCCCc
Q 002207 462 LASYN-----SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 462 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
+..+. ..++++++|+.+++|...|.++++++..+...+|..
T Consensus 328 ~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~g 373 (1150)
T 3hbl_A 328 INMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFG 373 (1150)
T ss_dssp TCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCCCCCEEECCCCTT
T ss_pred cccccccccccceEEEEEEEeccCCccccCCCCceEEEEEcCCCCc
Confidence 11111 236999999999999989999888887766666544
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=272.07 Aligned_cols=279 Identities=19% Similarity=0.157 Sum_probs=201.5
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||. +|+.+++++++.||+|+.++.+++.. .... .+..+ . ..+... +..
T Consensus 15 k~IlIlG~G~---------~g~~la~aa~~~G~~vi~~d~~~~~~------~~~~----ad~~~-~----~~~~d~-~~l 69 (389)
T 3q2o_A 15 KTIGIIGGGQ---------LGRMMALAAKEMGYKIAVLDPTKNSP------CAQV----ADIEI-V----ASYDDL-KAI 69 (389)
T ss_dssp SEEEEECCSH---------HHHHHHHHHHHTTCEEEEEESSTTCT------TTTT----CSEEE-E----CCTTCH-HHH
T ss_pred CEEEEECCCH---------HHHHHHHHHHHcCCEEEEEeCCCCCc------hHHh----CCceE-e----cCcCCH-HHH
Confidence 5899999998 39999999999999998775443311 1000 01000 0 001111 111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+...+|+|.+... ..+..+...|+..|+ +|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.
T Consensus 70 ~~~~~~~dvI~~~~e---~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~----~~ 140 (389)
T 3q2o_A 70 QHLAEISDVVTYEFE---NIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQ----LT 140 (389)
T ss_dssp HHHHHTCSEEEESCC---CCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHH----HH
T ss_pred HHHHHhCCEeeeccc---cccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH----HH
Confidence 222346899855432 234344556666676 789999999999999999999999999999998876542 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCC-ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGS-SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gs-S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
++.+ .++||+||||..+++ |.|+.++++.+|+.+..... .+..+|||+||+|++|++|.++++.+ +.
T Consensus 141 ~~~~-----~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~----~~~~~lvEe~i~g~~E~~v~~~~~~~---G~ 208 (389)
T 3q2o_A 141 EAIA-----ELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLA----NAAECILEKWVPFEKEVSVIVIRSVS---GE 208 (389)
T ss_dssp HHHH-----HHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHH----HHSCEEEEECCCCSEEEEEEEEECTT---CC
T ss_pred HHHH-----hcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc----CCCCEEEEecccCceEEEEEEEEcCC---CC
Confidence 3332 267899999999976 79999999999977665443 14689999999977999999997533 33
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+++++.+... ..+++ .....|+.+++++.+++++++.+++++||++|+++|||++
T Consensus 209 ~~~~~~~e~~~----------~~g~~-----------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~--- 264 (389)
T 3q2o_A 209 TKVFPVAENIH----------VNNIL-----------HESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFA--- 264 (389)
T ss_dssp EEECCCEEEEE----------ETTEE-----------EEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE---
T ss_pred EEEecCeeeEE----------cCCce-----------EEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEE---
Confidence 45555554321 11121 2445788999999999999999999999999999999987
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+++|++||+||||+||.+.+.. ..++|+|.
T Consensus 265 --------------~~dg~~~viEiNpR~~~s~~~~----~~~~g~~~ 294 (389)
T 3q2o_A 265 --------------TADGEIYINELAPRPHNSGHYT----QDACETSQ 294 (389)
T ss_dssp --------------CTTSCEEEEEEESSCCGGGTTH----HHHBSSCH
T ss_pred --------------eCCCCEEEEEeeCCCCCchhHH----HHHcCCCH
Confidence 5788999999999999775432 46789984
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=300.12 Aligned_cols=348 Identities=18% Similarity=0.184 Sum_probs=202.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|+.+| + .|..+++++++.||+++.++-+.+........+ |..+.+.+ ....+.....
T Consensus 3 ~kiLIanrG-----e----ia~riiraar~lGi~~vav~sd~d~~a~~~~~a--------D~~~~i~p~~~~~syld~~~ 65 (681)
T 3n6r_A 3 NKILIANRG-----E----IACRVIKTARKMGISTVAIYSDADKQALHVQMA--------DEAVHIGPPPANQSYIVIDK 65 (681)
T ss_dssp CCBCBSCCH-----H----HHHHHHHHHGGGSCCBCCEECSTTSSCHHHHHS--------SCCEECSSSSGGGTTSCHHH
T ss_pred CEEEEECCc-----H----HHHHHHHHHHHcCCEEEEEEcCCCCCChhHHhC--------CEEEEcCCCCcccCccCHHH
Confidence 478888766 2 388999999999999998865554322111000 00001100 0001111112
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ....+|+|+|.. |...|+..++..|+.+|+||+|+++.++.++.||..+|++|+++|||+|+++ .+.+.+.
T Consensus 66 i~~~a~~~~~daI~pg~-gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e- 143 (681)
T 3n6r_A 66 VMAAIRATGAQAVHPGY-GFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADE- 143 (681)
T ss_dssp HHHHHHHTCCSCCBCCS-SSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-----------
T ss_pred HHHHHHHhCcCEEEECC-CccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHH-
Confidence 2221 134799988876 5677999999999999999999999999999999999999999999999985 3433322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
+.++. ..++||+||||..+++|+||.+|++.+|+.+....+... . .++.++||+||+|.+|+++.++.
T Consensus 144 ---~~~~a-----~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~ 215 (681)
T 3n6r_A 144 ---AVKIS-----NQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLC 215 (681)
T ss_dssp -------------------------------------------------------------------CCSCEEEEEEEEC
T ss_pred ---HHHHH-----HhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEE
Confidence 22222 247899999999999999999999999877655543221 1 25689999999987899999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++.| ..+.+...+. .+.....| .....|+. +++++.++|.+.+.++++++|++|++
T Consensus 216 d~~G---~vv~l~~rd~--------------s~qr~~~k------~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~ 272 (681)
T 3n6r_A 216 DSHG---NGIYLGEREC--------------SIQRRNQK------VVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAG 272 (681)
T ss_dssp CSSS---CCEEEEEEEC--------------CCEETTEE------CEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEE
T ss_pred eCCC---CEEEEeeeec--------------ceeccCcc------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceE
Confidence 5433 3333222110 11111112 23456886 99999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
++||++ +++|++||+||||+++.+ .|.....+|+++ ++.+++.++.....+.+ .
T Consensus 273 ~vEf~~-----------------d~dg~~~~lEiNpR~~~~----~~~te~~tGvdl---~~~~l~~a~G~~l~~~~~~~ 328 (681)
T 3n6r_A 273 TVEFIV-----------------DGQKNFYFLEMNTRLQVE----HPVTELITGVDL---VEQMIRVAAGEPLSITQGDV 328 (681)
T ss_dssp EEEEEE-----------------CTTSCCCCCEEECSCCTT----HHHHHHHHTCCH---HHHHHHHHTSCCCSSCTTTC
T ss_pred EEEEEE-----------------eCCCCEEEEecccccCCC----cHHhHHHhCCCH---HHHHHHHHCCCCCCCCcccc
Confidence 999987 568899999999999854 355545689964 56667777776333322 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecC
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFG 499 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~G 499 (953)
...++++++|+.+++|...|.+++++++-+-..+
T Consensus 329 ~~~g~ai~~ri~aedp~~~f~p~~G~i~~~~~p~ 362 (681)
T 3n6r_A 329 KLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPA 362 (681)
T ss_dssp CCCSEEEEEEEESEEGGGTTEECCEECSCEECCC
T ss_pred ceeEEEEEEEEecCCcccccCCCCcEEEEEECCC
Confidence 2347999999999999999999988876655554
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=308.06 Aligned_cols=306 Identities=12% Similarity=0.106 Sum_probs=210.4
Q ss_pred CcCeEEEEecCCC-----CchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGPS-----AERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~S-----~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||+||.+ .|+|+| +.+++++|++.||+|+.++.+++ +...+. ...+ ..+.++.. +
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~---~~~~~~al~~~G~~vi~v~~np~--~~s~~~------~~ad-~~~~~p~~--~ 623 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYC---CVHASLALREDGYETIMVNCNPE--TVSTDY------DTSD-RLYFEPVT--L 623 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHH---HHHHHHHHHHTTCEEEEECCCTT--SSTTST------TSSS-EEECCCCS--H
T ss_pred cCcEEEEecCCccccccccccchh---HHHHHHHHHhcCCEEEEEecCCc--cccccc------cccc-EEEeccch--h
Confidence 4579999999875 799997 66779999999999987765443 110000 0000 01111110 0
Q ss_pred CcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCc
Q 002207 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE 230 (953)
Q Consensus 151 ~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~ 230 (953)
..+..+.+ .+++|.|++.++|... -.++..|+.+|+|++|+++.++.+++||..++++|+++|||+|++..+.+.+
T Consensus 624 e~v~~i~~--~e~~d~Vi~~~g~~~~--~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~e 699 (1073)
T 1a9x_A 624 EDVLEIVR--IEKPKGVIVQYGGQTP--LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIE 699 (1073)
T ss_dssp HHHHHHHH--HHCCSEEECSSSTHHH--HTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHH
T ss_pred hhhhhhhh--hcCcceEEeecCCchH--HHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCHH
Confidence 00111111 2479999998876433 2467889999999999999999999999999999999999999999887644
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
. +.++.+ .++||+||||..+++|.||.+|++.+|+.+...+++....+..+|||+||+|.+|++|.++.++
T Consensus 700 e----a~~~~~-----~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~ 770 (1073)
T 1a9x_A 700 M----AVEKAK-----EIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDG 770 (1073)
T ss_dssp H----HHHHHH-----HHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECS
T ss_pred H----HHHHHH-----HcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEEC
Confidence 2 333332 2678999999999999999999999998877765543223568999999998449999999743
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
. ..++....+.. ...++..+. +...+|+ .++++..+++++++.+++++||++|+++|
T Consensus 771 ~----~v~~~~i~e~~-----------------~~~g~~~gd-~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~v 828 (1073)
T 1a9x_A 771 E----MVLIGGIMEHI-----------------EQAGVHSGD-SACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNV 828 (1073)
T ss_dssp S----CEEEEEEEEES-----------------SCTTSCGGG-CCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred C----eEEEEeeEEEE-----------------eccCCccCC-ceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Confidence 1 22222222210 012233232 3455676 79999999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
||++ + +|++||+||||+|+ +.+|...+++|+++.+++.+++
T Consensus 829 df~v-----------------~-~~~~~viEvNpR~~----~~~~~~~~~tGi~l~~~~~~~~ 869 (1073)
T 1a9x_A 829 QFAV-----------------K-NNEVYLIEVNPRAA----RTVPFVSKATGVPLAKVAARVM 869 (1073)
T ss_dssp EEEE-----------------C-SSCEEEEEEECSCC----TTHHHHHHHHSCCHHHHHHHHH
T ss_pred EEEE-----------------E-CCeEEEEEEECCCc----cHHHHHHHHHCcCHHHHHHHHH
Confidence 9986 3 67899999999998 3468888899999988876654
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=271.77 Aligned_cols=237 Identities=19% Similarity=0.137 Sum_probs=177.2
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++. +|++.++++++.++. ++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+++
T Consensus 69 ~~~d~V~~~-----~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e----~~~~~- 137 (412)
T 1vkz_A 69 PEEDIVIPG-----SEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEE----LREKI- 137 (412)
T ss_dssp CSSCEECCS-----SGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHH-
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCHHH----HHHHH-
Confidence 579999992 577777899999998 8899999999999999999999999999999988866432 33333
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc--CCC--CcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GID--DRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~--~~~--~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
+.++||+||||..+++|.||.+|++.+|+.+.+.+++.. .++ ..+|||+||+| +|++|.++.++ . .
T Consensus 138 ----~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~E~sv~~~~dg--~---~ 207 (412)
T 1vkz_A 138 ----KKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVVNG--R---N 207 (412)
T ss_dssp ----TTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEEET--T---E
T ss_pred ----HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-cEEEEEEEECC--C---E
Confidence 236789999999999999999999999988776665432 132 38999999997 99999999632 1 1
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh-----CCCCeeEeeee
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL-----GLCDFARIDGW 392 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL-----g~~G~arVDf~ 392 (953)
+...+. .+- ....++++.++..++ +....|+.+++++.+++++++.+++++| +++|+.++||+
T Consensus 208 ~~~~~~-~~~----------~~~~~~~~~~~~~g~-~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~ 275 (412)
T 1vkz_A 208 FVILPF-VRD----------YKRLMDGDRGPNTGG-MGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLM 275 (412)
T ss_dssp EEECCC-CEE----------CCEEETTTEEEECSC-SEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred EEEeee-eEe----------eeeccCCCCCCCCCC-ceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE
Confidence 211111 110 234566666665544 4566898899999999999999999999 78899999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
+ +++| +||+|||++||.+.+ +.+....|.++.+++..++
T Consensus 276 ~-----------------~~~g-~~viEiN~R~g~~~~---~~~~~~~g~d~~~~~~~~~ 314 (412)
T 1vkz_A 276 L-----------------HDGD-PYILEYNVRLGDPET---EVIVTLNPEGFVNAVLEGY 314 (412)
T ss_dssp E-----------------ETTE-EEEEEEESSCCTTHH---HHHHHHCHHHHHHHHHHHH
T ss_pred E-----------------ECCC-cEEEEEecCCCCCcc---eeehhhcCCCHHHHHHHHh
Confidence 6 5678 999999999996643 2233346776665554443
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=273.83 Aligned_cols=342 Identities=15% Similarity=0.151 Sum_probs=227.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc---ccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL---AQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 154 (953)
+||+|+.+|. .+..+++++++.||+|+.++.+.+...... .. .+..+.+... ...+....
T Consensus 7 k~ILI~g~g~---------~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~----~~----ad~~~~i~~~~~~~~~y~d~~ 69 (461)
T 2dzd_A 7 RKVLVANRGE---------IAIRVFRACTELGIRTVAIYSKEDVGSYHR----YK----ADEAYLVGEGKKPIEAYLDIE 69 (461)
T ss_dssp SEEEECSCHH---------HHHHHHHHHHHHTCEEEEEECGGGTTCTHH----HH----SSSEEECSTTSCTTGGGTCHH
T ss_pred cEEEEECCcH---------HHHHHHHHHHHcCCEEEEEECCcccccchh----hh----CCEEEEcCCCCCccccccCHH
Confidence 4899886552 377899999999999998876544211000 00 0000000000 00000011
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCcc
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEV 231 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~ 231 (953)
.+.+. ...++|+|++.. |..+|+..++..|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 70 ~l~~~~~~~~id~v~~~~-g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~- 147 (461)
T 2dzd_A 70 GIIEIAKAHDVDAIHPGY-GFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLE- 147 (461)
T ss_dssp HHHHHHHHTTCCEEECCS-SSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHH-
T ss_pred HHHHHHHHhCCCEEEECC-CccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHH-
Confidence 11111 134799999985 7778998899999999999999999999999999999999999999999986 454432
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEE
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
++.++++. ++||+||||..+++|.||.++++.+|+.+....++.. . .+..++||+||+|++|+++.++
T Consensus 148 ---~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 219 (461)
T 2dzd_A 148 ---DVVAFAEA-----HGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQIL 219 (461)
T ss_dssp ---HHHHHHHH-----HCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEE
T ss_pred ---HHHHHHHh-----cCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEE
Confidence 23333322 5789999999999999999999999877665544321 1 2468999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
.+++| ..+.+.. ... ..... +. ......|+ .+++++.+++++.+.+++++||+.|+
T Consensus 220 ~~~~G---~~~~~~~--~~~------------~~~~~---~~---~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~ 276 (461)
T 2dzd_A 220 GDYEG---NIVHLYE--RDC------------SVQRR---HQ---KVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNA 276 (461)
T ss_dssp ECTTC---CEEEEEE--EEE------------EEEET---TE---EEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EcCCC---CEEEEEe--ccc------------ccccc---cc---ceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 75433 2222111 100 01110 10 12334677 69999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh-CCCC--C
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR-FPNL--A 463 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r-~~~~--~ 463 (953)
+++||++ ++ |++||+|||+++|.+ .+.....+|+++.++ +++.++.. .+.. .
T Consensus 277 ~~ve~~~-----------------~~-~~~~viEiN~R~~~~----~~~~~~~~g~dl~~~---~~~~~~G~~l~~~~~~ 331 (461)
T 2dzd_A 277 GTVEFLV-----------------SG-DEFYFIEVNPRIQVE----HTITEMITGIDIVQS---QILIADGCSLHSHEVG 331 (461)
T ss_dssp EEEEEEE-----------------ET-TEEEEEEEESSCCGG----GHHHHHHHCCCHHHH---HHHHHTTCCTTSTTTC
T ss_pred eEEEEEE-----------------eC-CCEEEEEEECCCCCc----eeeEEeecCCCHHHH---HHHHHcCCCccccccc
Confidence 9999986 45 779999999999853 233445679986554 56666653 2221 1
Q ss_pred CCC-----CcceecccccccCCCccccccCCCceEE
Q 002207 464 SYN-----SVSSHLPGRSSGSKPTEALNKREGIREV 494 (953)
Q Consensus 464 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 494 (953)
++. ..++++..|+.+.++...|.+..+..++
T Consensus 332 ~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~~g~i~~ 367 (461)
T 2dzd_A 332 IPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMA 367 (461)
T ss_dssp CCCGGGCCCCSEEEEEEEESEEGGGTTEECCEECSE
T ss_pred cccccccccceeEEEeeecccCCccCccCCCCeeeE
Confidence 211 2357777777776665445554454444
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=277.68 Aligned_cols=307 Identities=16% Similarity=0.161 Sum_probs=212.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-ccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-AQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (953)
+||+|+.+|. .+..+++++++.||+|+.++-+.+...... .. .+..+...+. ...+.....+
T Consensus 3 k~ilI~g~g~---------~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~----~~----ad~~~~~~p~~~~~~~d~~~l 65 (451)
T 1ulz_A 3 NKVLVANRGE---------IAVRIIRACKELGIPTVAIYNEVESTARHV----KL----ADEAYMIGTDPLDTYLNKQRI 65 (451)
T ss_dssp SSEEECCCHH---------HHHHHHHHHHHHTCCEEEEECGGGTTCHHH----HH----SSEEEECCSSTTHHHHCHHHH
T ss_pred ceEEEECCcH---------HHHHHHHHHHHcCCeEEEEechhhcccchh----hh----CcEEEEcCCCcccccCCHHHH
Confidence 4799987662 278899999999999998765443211000 00 0000000000 0000000111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccch
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNE 233 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~~ 233 (953)
.+. ...++|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 66 ~~~~~~~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~--- 141 (451)
T 1ulz_A 66 INLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLE--- 141 (451)
T ss_dssp HHHHHHTTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHH---
T ss_pred HHHHHHcCCCEEEEC-CCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHH---
Confidence 111 13579999987 46678899899999999999999999999999999999999999999999987 454432
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CC-CCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI-DDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~-~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++.++++. .+||+||||..+++|.||.+|++.+|+.+....++.. .+ +..++||+||+|++|+++.++.+
T Consensus 142 -~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~ 215 (451)
T 1ulz_A 142 -EAKALARE-----IGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGD 215 (451)
T ss_dssp -HHHHHHHH-----HCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEEC
T ss_pred -HHHHHHHH-----cCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEc
Confidence 23333322 5789999999999999999999999987666544321 12 46899999999768999999975
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
.+| ..+.+.. .. +++..++. ......|+. ++++..+++++.+.+++++||++|+++
T Consensus 216 ~~G---~~~~~~~--~~---------------~~~~~~~~---~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ 272 (451)
T 1ulz_A 216 KHG---NVIHLGE--RD---------------CSIQRRNQ---KLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGT 272 (451)
T ss_dssp TTS---CEEEEEE--EE---------------EEEEETTE---EEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCC---CEEEEee--ee---------------cccccccc---cceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceE
Confidence 332 2332221 11 11111221 123346876 999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+||++ +++|++||+|||++|+.+ .|....++|+++.+ .+++.++..
T Consensus 273 ve~~~-----------------~~~g~~~viEiN~R~~~~----~~~~~~~~g~dl~~---~~~~~~~G~ 318 (451)
T 1ulz_A 273 MEFIA-----------------DQEGNLYFIEMNTRIQVE----HPVSEMVTGIDIVK---WQIKIAAGE 318 (451)
T ss_dssp EEEEE-----------------CTTCCEEEEEEECSCCTT----HHHHHHHHCCCHHH---HHHHHHTTC
T ss_pred EEEEE-----------------eCCCCEEEEEeeCCCCcc----chHHHHHhCCCHHH---HHHHHHcCC
Confidence 99986 678899999999999843 35555678997644 445555554
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=277.98 Aligned_cols=306 Identities=17% Similarity=0.170 Sum_probs=213.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|+.+|. ++..+++++++.||+|+.++.+.+..+.... . .+..+...+ ....+.....
T Consensus 3 k~ilI~g~g~---------~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~----~----ad~~~~~~p~~~~~~~~d~~~ 65 (449)
T 2w70_A 3 DKIVIANRGE---------IALRILRACKELGIKTVAVHSSADRDLKHVL----L----ADETVCIGPAPSVKSYLNIPA 65 (449)
T ss_dssp SEEEECCCHH---------HHHHHHHHHHHHTCEEEEEEEGGGTTCHHHH----H----SSEEEEEECSSGGGTTTCHHH
T ss_pred ceEEEeCCcH---------HHHHHHHHHHHcCCeEEEEeccccccCchhh----h----CCEEEEcCCCCccccccCHHH
Confidence 4799887762 3788999999999999988765543211000 0 000000000 0001111111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+.
T Consensus 66 l~~~~~~~~~d~v~~~-~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~- 143 (449)
T 2w70_A 66 IISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMD- 143 (449)
T ss_dssp HHHHHHHHTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHH-
T ss_pred HHHHHHHcCCCEEEEC-CCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHH-
Confidence 1111 12479999987 56778998899999999999999999999999999999999999999999986 5554332
Q ss_pred hhhh-hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEE
Q 002207 233 ESEL-SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 233 ~~~~-~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+ .++++. ++||+||||..+++|.||.+|++.+|+.+....++.. . .+..++||+||+|++|++|.++
T Consensus 144 ---~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~ 215 (449)
T 2w70_A 144 ---KNRAIAKR-----IGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVL 215 (449)
T ss_dssp ---HHHHHHHH-----HCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ---HHHHHHHH-----hCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEE
Confidence 2 333322 5789999999999999999999999887665544321 0 1468999999997789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
.+.+| ..+.+... . +++..++. ......|+. +++++.+++++.+.+++++||++|+
T Consensus 216 ~~~~G---~~~~~~~~--~---------------~~~~~~~~---~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~ 272 (449)
T 2w70_A 216 ADGQG---NAIYLAER--D---------------CSMQRRHQ---KVVEEAPAPGITPELRRYIGERCAKACVDIGYRGA 272 (449)
T ss_dssp ECTTS---CEEEEEEE--E---------------EEEEETTE---EEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EcCCC---CEEEEece--e---------------cccccCCc---ceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCce
Confidence 75332 23322211 0 11212221 123457876 9999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++||++ ++ |++||+|||++|+.+ ++....++|+++.++ +++.++..
T Consensus 273 ~~ve~~~-----------------~~-~~~~viEiN~R~~~~----~~~~~~~~g~dl~~~---~~~~~~G~ 319 (449)
T 2w70_A 273 GTFEFLF-----------------EN-GEFYFIEMNTRIQVE----HPVTEMITGVDLIKE---QLRIAAGQ 319 (449)
T ss_dssp EEEEEEE-----------------ET-TEEEEEEEECSCCTT----HHHHHHHHCCCHHHH---HHHHHHTC
T ss_pred EEEEEEE-----------------EC-CCEEEEEEECCCCcc----chHHHHHhCCCHHHH---HHHHHCCC
Confidence 9999986 45 779999999999843 455556789986554 45555554
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=270.75 Aligned_cols=303 Identities=17% Similarity=0.128 Sum_probs=206.0
Q ss_pred cCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCc
Q 002207 73 RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGS 152 (953)
Q Consensus 73 ~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (953)
+|.+.+||+|+.+|.. +..+++++++.||+++.++. .+.+. +.... .+..+... ...
T Consensus 3 ~m~~~~~ilI~g~g~~---------~~~~~~a~~~~G~~~v~v~~-~~~~~----~~~~~----ad~~~~~~-----~~d 59 (403)
T 4dim_A 3 AMYDNKRLLILGAGRG---------QLGLYKAAKELGIHTIAGTM-PNAHK----PCLNL----ADEISYMD-----ISN 59 (403)
T ss_dssp ---CCCEEEEECCCGG---------GHHHHHHHHHHTCEEEEEEC-SSCCH----HHHHH----CSEEEECC-----TTC
T ss_pred cccCCCEEEEECCcHh---------HHHHHHHHHHCCCEEEEEcC-CCCCC----cchhh----CCeEEEec-----CCC
Confidence 3555679999988853 45688999999999987742 11010 00000 00000000 000
Q ss_pred chhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc
Q 002207 153 LSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231 (953)
Q Consensus 153 ~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~ 231 (953)
...+.+. ...++|+|+|. |...+...+..+++.+|+| |+++.++.++.||..++++|+++|||+|++..+.+.+
T Consensus 60 ~~~l~~~~~~~~~d~v~~~--~~~~~~~~~a~~~~~~gl~--g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~- 134 (403)
T 4dim_A 60 PDEVEQKVKDLNLDGAATC--CLDTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNEN- 134 (403)
T ss_dssp HHHHHHHTTTSCCSEEECC--SCSTTHHHHHHHHHHHTCS--SCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHH-
T ss_pred HHHHHHHHHHcCCCEEEeC--CcchhHHHHHHHHHHcCcC--CCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHH-
Confidence 1111121 13479999985 4444455778899999996 8999999999999999999999999999998776543
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++.++.+ .++||+||||..+++|.||.+|++.+|+.+....+.....+..+|||+||+| +|+++.++..
T Consensus 135 ---~~~~~~~-----~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~~~~~-- 203 (403)
T 4dim_A 135 ---ELKNALE-----NLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQAFVY-- 203 (403)
T ss_dssp ---HHHHHHH-----TSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEEEEEE--
T ss_pred ---HHHHHHh-----cCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEEEEEE--
Confidence 2333332 3678999999999999999999999998877766655445678999999998 9999999852
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCC-eeEee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCD-FARID 390 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G-~arVD 390 (953)
+++..++.+.+ .+.+..++. ....+..|+.+++++.+++++.+.+++++||++| .+++|
T Consensus 204 --~g~~~~~~~~~----------------~~~~~~~~~--~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve 263 (403)
T 4dim_A 204 --KNDVLFVMPHG----------------DETYMSHTA--VPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVD 263 (403)
T ss_dssp --TTEEEEEEEEE----------------EEEEESSSE--EEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred --CCEEEEEEEec----------------ceeccCCCC--cceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 22333322221 112222221 1245567889999999999999999999999998 89999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHH-HHHHhCCCHHHHHHHHHHHHhhh
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ-QASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~-~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|++ + +|++||+|||++||- +.+|. .....|+++ ++.+++.++..
T Consensus 264 ~~~-----------------~-~~~~~~iEiN~R~~~---~~~~~~~~~~~G~d~---~~~~~~~~~G~ 308 (403)
T 4dim_A 264 MIL-----------------K-DNEVYIIELTGRVGA---NCLPELVEINYGIEY---YKMIASMAISE 308 (403)
T ss_dssp EEE-----------------E-TTEEEEEEEESSCCS---TTHHHHHHHHHTSCH---HHHHHHHHTTC
T ss_pred EEE-----------------E-CCcEEEEEEcCCCCC---CcHHHHHHHHhCcCH---HHHHHHHHcCC
Confidence 986 4 678999999999994 34443 345789985 44456666654
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=263.53 Aligned_cols=287 Identities=13% Similarity=0.056 Sum_probs=199.9
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+|+.||. +|+.+++++++.||+++.++.+++..... . .+. +.. .......+.+
T Consensus 1 ~iliiG~g~---------~g~~~~~a~~~~G~~v~~~~~~~~~~~~~------~----a~~-~~~-----~~~d~~~l~~ 55 (369)
T 3aw8_A 1 MIGILGGGQ---------LGRMLALAGYPLGLSFRFLDPSPEACAGQ------V----GEL-VVG-----EFLDEGALLR 55 (369)
T ss_dssp CEEEECCSH---------HHHHHHHHHTTBTCCEEEEESCTTCGGGG------T----SEE-EEC-----CTTCHHHHHH
T ss_pred CEEEECCCH---------HHHHHHHHHHHcCCEEEEEeCCCCChHHH------h----hce-Eec-----CCCCHHHHHH
Confidence 689998885 38899999999999988766443211100 0 000 000 0001111112
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
...++|+|++..+... ..+...|+.+| ++|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 56 -~~~~~d~v~~~~e~~~---~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 125 (369)
T 3aw8_A 56 -FAEGLALVTYEFENVP---VEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPED----LEE 125 (369)
T ss_dssp -HHTTCSEEEECCTTCC---HHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHH----HHH
T ss_pred -HHhCCCEEEECCCCcC---HHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHH----HHH
Confidence 2258999999886543 33445778889 6899999999999999999999999999999998876432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
+. ..++||+||||..++ +|.||.++++.+|+.+....+ .+..++||+||++|+|+++.++.+++ +..
T Consensus 126 ~~-----~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~----~~~~~lvEe~i~~g~e~sv~~~~d~~---G~~ 193 (369)
T 3aw8_A 126 GL-----KRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL----GGRGLILEGFVPFDREVSLLAVRGRT---GEV 193 (369)
T ss_dssp HH-----TTTCSSEEEEECCC------EEEECSHHHHHHHHTTT----CSSSEEEEECCCCSEEEEEEEEECTT---SCE
T ss_pred HH-----HHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc----CCCcEEEEEcCCCCEEEEEEEEECCC---CCE
Confidence 32 236789999999999 999999999999987655432 25789999999933999999997533 234
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
+.++..+... ...+++ ....|+. ++++..+++++++.+++++||++|++++||++
T Consensus 194 ~~~~~~~~~~----------~~~~~~-----------~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~--- 249 (369)
T 3aw8_A 194 AFYPLVENRH----------WGGILR-----------LSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQ--- 249 (369)
T ss_dssp EECCCEEEEE----------ETTEEE-----------EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEE---
T ss_pred EEECCeeeee----------eCCEEE-----------EEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEE---
Confidence 4444443211 111211 2457888 99999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++ |++||+||||+||.+.++. . .+.|.+. +..+++.++..
T Consensus 250 --------------~~-~~~~viEiN~R~~~~~~~~--~--~~~g~~~---~~~~~~~~~g~ 289 (369)
T 3aw8_A 250 --------------VG-EELLFNEMAPRVHNSGHWT--I--EGAETSQ---FENHLRAVLGL 289 (369)
T ss_dssp --------------ET-TEEEEEEEESSCCGGGTTH--H--HHBSSCH---HHHHHHHHHTC
T ss_pred --------------EC-CcEEEEEEeCCcCCcccee--e--eeecCCH---HHHHHHHHcCC
Confidence 45 7899999999999876553 2 2578863 44455555554
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=264.32 Aligned_cols=305 Identities=17% Similarity=0.119 Sum_probs=201.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|||+|++|| +++.+++++++.||+|+.++.+.+...+. . ....+....... + .+
T Consensus 2 ~m~Ililg~g----------~~~~l~~a~~~~G~~v~~~~~~~~~~~~~---~----~~~~~~~~~~~~----~---~d- 56 (334)
T 2r85_A 2 KVRIATYASH----------SALQILKGAKDEGFETIAFGSSKVKPLYT---K----YFPVADYFIEEK----Y---PE- 56 (334)
T ss_dssp CSEEEEESST----------THHHHHHHHHHTTCCEEEESCGGGHHHHH---T----TSCCCSEEECSS----C---CH-
T ss_pred ceEEEEECCh----------hHHHHHHHHHhCCCEEEEEECCCCCcccc---c----ccccCceEecCC----c---Ch-
Confidence 4799999999 48999999999999998776543210000 0 000000000000 0 00
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHH--HHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQ--EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq--~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
+.+...+|+|+|. +|+...+ ..||.+|+|++++ +.++.+++||..++++|+++|||+|++ +.+.+
T Consensus 57 -~~l~~~~d~i~~~-----~e~~~~~~~~~le~~g~~~~~~-~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~---- 123 (334)
T 2r85_A 57 -EELLNLNAVVVPT-----GSFVAHLGIELVENMKVPYFGN-KRVLRWESDRNLERKWLKKAGIRVPEV--YEDPD---- 123 (334)
T ss_dssp -HHHHHTTEEECCC-----TTHHHHHCHHHHHTCCSCBBSC-TTHHHHHHSHHHHHHHHHHTTCCCCCB--CSCGG----
T ss_pred -HHhcccCCEEEEC-----cchhhhhHHHHHHHcCCCccCC-HHHHHHHHhHHHHHHHHHHcCCCCCCc--cCChH----
Confidence 1122356887743 3444333 3558999998865 588999999999999999999999998 33211
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
.+.||+||||..+++|.||.++++.+|+......++.. .....+|||+||+| .|+++.++-+..
T Consensus 124 ------------~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e~~~~~~~~~~ 190 (334)
T 2r85_A 124 ------------DIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKV 190 (334)
T ss_dssp ------------GCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETT
T ss_pred ------------HcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ceeEEEEeecCc
Confidence 14589999999999999999999999987666554321 12268999999998 999866653211
Q ss_pred CCccccEEecceEEEEeccCccccccCCccccc--ccCccCC-CceEEEc---CCCCCHHHHHHHHHHHHHHHHHh----
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNY--RRKYLPT-QQVAYHT---PPRFPIVVINSIREGASLLFQRL---- 381 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy--~~Ky~~~-~~~~~~~---Pa~l~~~~~~~i~~~a~~~~~aL---- 381 (953)
++... .....+++... .++++++ ..++..+ ....... |+.+++++.+++++++.+++++|
T Consensus 191 ~~~v~-~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~ 260 (334)
T 2r85_A 191 REELE-LMSIDRRYESN---------VDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELM 260 (334)
T ss_dssp TTEEE-EEEEEEEEEEE---------GGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred Cceee-eeeeccEEEec---------cCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhc
Confidence 11000 11112333221 1123321 1111110 0012223 88899999999999999999999
Q ss_pred -CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC-CCc----chHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 382 -GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQT----SFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 382 -g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~-t~~----S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
++.|++++||++ +++|++||+|||++||. +.. +.||.+....|+++.+.+..+|+.|
T Consensus 261 ~~~~G~~~vd~~~-----------------~~~g~~~viEiN~R~g~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~i~~~ 323 (334)
T 2r85_A 261 GGLWGPFCLEGVF-----------------TPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREA 323 (334)
T ss_dssp SCCCEEEEEEEEE-----------------CTTSCEEEEEEECSCCGGGGGGTTCCTTGGGTCSSCCCHHHHHHHHHHHH
T ss_pred ccccccEEEEEEE-----------------CCCCCEEEEEEeCCcCCCceeeecCccchheeecCcccHHHHHHHHHHHH
Confidence 899999999986 57789999999999998 433 3678777677999999999999999
Q ss_pred hhhC
Q 002207 456 CSRF 459 (953)
Q Consensus 456 ~~r~ 459 (953)
+++.
T Consensus 324 ~~~~ 327 (334)
T 2r85_A 324 IEND 327 (334)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9863
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=265.22 Aligned_cols=286 Identities=18% Similarity=0.116 Sum_probs=196.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||. +|+.++++|++.||+|+.++.+++..... . .+..+ .. .......+
T Consensus 2 ~~Ililg~g~---------~g~~~~~a~~~~G~~v~~~~~~~~~~~~~------~----~~~~~-~~----~~~d~~~l- 56 (380)
T 3ax6_A 2 KKIGIIGGGQ---------LGKMMTLEAKKMGFYVIVLDPTPRSPAGQ------V----ADEQI-VA----GFFDSERI- 56 (380)
T ss_dssp CEEEEECCSH---------HHHHHHHHHHHTTCEEEEEESSTTCTTGG------G----SSEEE-EC----CTTCHHHH-
T ss_pred CEEEEECCCH---------HHHHHHHHHHHCCCEEEEEeCCCCCchhh------h----CceEE-EC----CCCCHHHH-
Confidence 4899999883 58999999999999988765443311000 0 00000 00 00001111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+..++|+|++..+.. ...+...|+.+|+| +|+++.++.+++||..+|++|+++|||+|++..+.+.+.
T Consensus 57 ~~~~~~~d~v~~~~e~~---~~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~------ 126 (380)
T 3ax6_A 57 EDLVKGSDVTTYDLEHI---DVQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES------ 126 (380)
T ss_dssp HHHHHTCSEEEESCSCS---CHHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHH------
T ss_pred HHHHhcCCEEEecccCC---CHHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH------
Confidence 11224799999976422 13455678999999 789999999999999999999999999999988765331
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
+++ ..+||+||||..++ +|.||.++++.+|+.+. ....+|||+||++|+|+++.++.+++| .
T Consensus 127 -~~~-----~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~--------~~~~~lvEe~i~~g~e~sv~~~~~~~G---~ 189 (380)
T 3ax6_A 127 -DVR-----EFGFPVVQKARKGGYDGRGVFIIKNEKDLENA--------IKGETYLEEFVEIEKELAVMVARNEKG---E 189 (380)
T ss_dssp -HHH-----TTCSSEEEEESCCC-----EEEECSGGGGGGC--------CCSSEEEEECCCEEEEEEEEEEECSSC---C
T ss_pred -HHH-----hcCCCEEEEecCCCCCCCCeEEECCHHHHHHH--------hcCCEEEEeccCCCeeEEEEEEECCCC---C
Confidence 221 36789999999999 99999999999886432 126899999999339999999974332 3
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+++++.+. +++... .. .....+|+.+++++.+++++++.+++++||++|++++||++
T Consensus 190 ~~~~~~~~~---------------~~~~~~-~~---~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~--- 247 (380)
T 3ax6_A 190 IACYPVVEM---------------YFDEDA-NI---CDTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFL--- 247 (380)
T ss_dssp EEEEEEEEE---------------C------------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEE---
T ss_pred EEEECCeee---------------eecccC-Ce---eEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEE---
Confidence 333333221 110000 00 01245788899999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+|||++||.+.+. . ..+.|.+. +..+++.++..
T Consensus 248 --------------~~~g~~~viEiN~R~~~~~~~--~--~~~~~~~~---~~~~~~~~~g~ 288 (380)
T 3ax6_A 248 --------------TKQGEILVNEIAPRPHNSGHY--T--IEACVTSQ---FEQHIRAIMNL 288 (380)
T ss_dssp --------------ETTSCEEEEEEESSCCGGGTH--H--HHHBSSCH---HHHHHHHHTTC
T ss_pred --------------eCCCcEEEEEecCCCCCCcee--e--hhhccccH---HHHHHHHHhCC
Confidence 678899999999999976543 2 23578864 45556655553
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=268.02 Aligned_cols=275 Identities=15% Similarity=0.147 Sum_probs=192.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
.+||+||.||.. |+.+++++++.||+|+.++.+++.. +... .+. .... .+.. .+.
T Consensus 12 ~~~IlIlG~G~l---------g~~la~aa~~lG~~viv~d~~~~~p------~~~~----ad~-~~~~----~~~d-~~~ 66 (377)
T 3orq_A 12 GATIGIIGGGQL---------GKMMAQSAQKMGYKVVVLDPSEDCP------CRYV----AHE-FIQA----KYDD-EKA 66 (377)
T ss_dssp TCEEEEECCSHH---------HHHHHHHHHHTTCEEEEEESCTTCT------TGGG----SSE-EEEC----CTTC-HHH
T ss_pred CCEEEEECCCHH---------HHHHHHHHHHCCCEEEEEECCCCCh------hhhh----CCE-EEEC----CCCC-HHH
Confidence 468999998854 8899999999999998775444311 1100 000 0000 0000 111
Q ss_pred HHhhccCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
...+..++|+|.+-+ |+- .+..+.+.. ++++++.++.+++||..+|++|+++|||+|++..+.+.+.
T Consensus 67 l~~~~~~~dvi~~~~-----E~~~~~~l~~l~~~~---~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~-- 136 (377)
T 3orq_A 67 LNQLGQKCDVITYEF-----ENISAQQLKLLCEKY---NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTD-- 136 (377)
T ss_dssp HHHHHHHCSEEEESS-----TTSCHHHHHHHHHHS---CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTH--
T ss_pred HHHHHHhCCcceecc-----cccCHHHHHHHhhhc---CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH--
Confidence 122233589986655 332 244444443 4568999999999999999999999999999998877543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
+.++.+ .++||+||||..++ +|.|+.++++.+|+.+....+ ....+|||+||+|.+|++|.++++.
T Consensus 137 --~~~~~~-----~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~----~~~~~ivEe~i~g~~E~sv~~~~~~-- 203 (377)
T 3orq_A 137 --IDKAIE-----TLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLI----ETSECVAEKYLNIKKEVSLTVTRGN-- 203 (377)
T ss_dssp --HHHHHH-----HTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHH----TTSCEEEEECCCEEEEEEEEEEECG--
T ss_pred --HHHHHH-----HcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc----CCCcEEEEccCCCCEEEEEEEEEeC--
Confidence 333332 26789999999998 799999999999977665543 2478999999997689999999632
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
++...++++.+... .++++ .....|+.+++ .++++++|.+++++||++|+++|||+
T Consensus 204 -~g~~~~~~~~e~~~----------~~g~~-----------~~~~~Pa~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~ 259 (377)
T 3orq_A 204 -NNQITFFPLQENEH----------RNQIL-----------FKTIVPARIDK--TAEAKEQVNKIIQSIHFIGTFTVEFF 259 (377)
T ss_dssp -GGCEEECCCEEEEE----------ETTEE-----------EEEEESCSSCC--HHHHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred -CCCEEEECCEeEEE----------ECCEE-----------EEEECCCCCCH--HHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 33445555554421 11111 23457888887 88999999999999999999999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+ +++|++||+||||+||-+.+ +.. .++++|.
T Consensus 260 ~-----------------~~~g~~~v~EinpR~~~sg~--~t~--~~~~~s~ 290 (377)
T 3orq_A 260 I-----------------DSNNQLYVNEIAPRPHNSGH--YSI--EACDYSQ 290 (377)
T ss_dssp E-----------------ETTCCEEEEEEESSCCGGGT--THH--HHBSSCH
T ss_pred E-----------------eCCCcEEEEEeeCCcCCCCc--Eee--hhcCCCH
Confidence 7 56789999999999995432 221 3567764
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=275.79 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=204.5
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCC--ccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe-----cC------
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYN--VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL-----QG------ 228 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~g--IpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~-----~~------ 228 (953)
.++|+|+|. +|..+|+..++++|+.+| ++++|+++.++.+++||..+|++|+++|||+|++..+ ..
T Consensus 129 ~~id~Vi~g-~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l 207 (554)
T 1w96_A 129 ADVDAVWAG-WGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGL 207 (554)
T ss_dssp TTCSEEECC-SSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCC
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccc
Confidence 479999988 688889999999999999 9999999999999999999999999999999998653 00
Q ss_pred -----------CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 229 -----------SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 229 -----------~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
.-...+++.++++ .++||+||||..+++|+||.+|++.+|+.+....+.....+..++||+||+
T Consensus 208 ~~ip~~~~~~~~~~~~~e~~~~~~-----~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~ 282 (554)
T 1w96_A 208 VSVDDDIYQKGCCTSPEDGLQKAK-----RIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG 282 (554)
T ss_dssp EECCHHHHGGGSCSSHHHHHHHHH-----HHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred cccccccccccCCCCHHHHHHHHH-----HcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC
Confidence 0011122323332 257899999999999999999999999887766655433467899999999
Q ss_pred CCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHH
Q 002207 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASL 376 (953)
Q Consensus 298 Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~ 376 (953)
|++|++|.++.++.| ..+.+...... +.++..|+. ...|+. +++++.+++++.+.+
T Consensus 283 g~~e~sv~vl~d~~G---~vv~l~~~~~~--------------~~~~~~k~~------~~~P~~~l~~~~~~~i~~~a~~ 339 (554)
T 1w96_A 283 RARHLEVQLLADQYG---TNISLFGRDCS--------------VQRRHQKII------EEAPVTIAKAETFHEMEKAAVR 339 (554)
T ss_dssp SCEEEEEEEEECTTS---CEEEEEEEEEE--------------EEETTEEEE------EEESCCSSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEcCCC---CEEEEeeeeee--------------eEeecccee------eeCCCcCCCHHHHHHHHHHHHH
Confidence 779999999975432 23322221111 223333332 235776 899999999999999
Q ss_pred HHHHhCCCCeeEeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 377 ~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
++++||++|++++||++ + ++|++||+|||+++|-+ .+.....+|+++.++ +++.+
T Consensus 340 ~~~alg~~G~~~ve~~~-----------------~~~dg~~~~iEiN~R~~g~----~~~~~~~~G~dl~~~---~~~~a 395 (554)
T 1w96_A 340 LGKLVGYVSAGTVEYLY-----------------SHDDGKFYFLELNPRLQVE----HPTTEMVSGVNLPAA---QLQIA 395 (554)
T ss_dssp HHHHHTCCEEEEEEEEE-----------------CTTTCCEEEEEEECSCCTT----THHHHHHHCCCHHHH---HHHHH
T ss_pred HHHHcCCcceEEEEEEE-----------------ECCCCCEEEEEeeCCCCcc----eehhhhhcCCCHHHH---HHHHH
Confidence 99999999999999986 4 67889999999999865 233334789986554 45555
Q ss_pred hhhCC-CC-----------------CC-------------CCCcceecccccccCCCccccccCCCceE
Q 002207 456 CSRFP-NL-----------------AS-------------YNSVSSHLPGRSSGSKPTEALNKREGIRE 493 (953)
Q Consensus 456 ~~r~~-~~-----------------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (953)
+.... .. .+ ....++.+.+|+..+++...|.+..+.+.
T Consensus 396 ~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~ 464 (554)
T 1w96_A 396 MGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLH 464 (554)
T ss_dssp TTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEE
T ss_pred cCCCcccccchhhhccCCccccccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEe
Confidence 54311 11 01 12245778888888887767766666543
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=300.90 Aligned_cols=353 Identities=16% Similarity=0.171 Sum_probs=197.5
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccC
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFG 151 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 151 (953)
|.+.+||+|+.+|.. |..+++++++.|++++.++-+.+........ .|..+.+.+ ......
T Consensus 28 ~~m~kkILI~grGei---------a~~iiraar~lGi~vVaV~s~~d~~a~~~~~--------ADe~~~i~p~~~~~syl 90 (1236)
T 3va7_A 28 KKPFETVLIANRGEI---------AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTD--------ADFSVALHGRTAAETYL 90 (1236)
T ss_dssp CCSCSEEEECCCHHH---------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHH--------SSEEEECCCSSTTTTTT
T ss_pred cCCCCEEEEEcCCHH---------HHHHHHHHHHCCCEEEEEEcCCCcCchhhhh--------CCEEEEeCCCccccccc
Confidence 333458999887732 8999999999999999887655422111000 000000000 000011
Q ss_pred cchhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE-EecCC
Q 002207 152 SLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGS 229 (953)
Q Consensus 152 ~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~-~~~~~ 229 (953)
....+.+. ...++|+|+|.. |...|+..++.+|+.+|+||+|+++.++.++.||..+|++|+++|||+|++. .+.+.
T Consensus 91 d~~~Il~~a~~~~iDaI~pg~-g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s~ 169 (1236)
T 3va7_A 91 DIDKIINAAKKTGAQAIIPGY-GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDA 169 (1236)
T ss_dssp CHHHHHHHHHHTTCSEEECCS-SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------
T ss_pred CHHHHHHHHHHhCCCEEEECC-ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCCH
Confidence 11111111 234799999988 7778999999999999999999999999999999999999999999999954 44433
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEE
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAI 305 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~ 305 (953)
+. +.++. ..++||+||||..+++|+||.+|++.+|+.+....+... ..+..++||+||+|++|++|.
T Consensus 170 ee----a~~~a-----~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~ 240 (1236)
T 3va7_A 170 KE----AKEVA-----KKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQ 240 (1236)
T ss_dssp ------------------------------------------------------------------------CCEEEEEE
T ss_pred HH----HHHHH-----HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEE
Confidence 22 22222 247899999999999999999999999877655543221 135689999999977999999
Q ss_pred EEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCC
Q 002207 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 306 Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
++.++.++ .+. .++... .+..+..| ....+|+. +++++.++|++.+.++++++|++
T Consensus 241 vl~Dg~g~---vv~--l~~rd~------------s~qr~~~k------~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~ 297 (1236)
T 3va7_A 241 MMGDGFGK---AIA--IGERDC------------SLQRRNQK------VIEETPAPNLPEATRAKMRAASERLGSLLKYK 297 (1236)
T ss_dssp EEEESSSC---EEE--EEEEEE------------EEEETTEE------EEEEESCSSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEecCCce---EEE--Eeeeee------------eeeecCcc------eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 99865432 222 222211 11122222 34457886 99999999999999999999999
Q ss_pred CeeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCC
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~ 463 (953)
|+++|||++ ++ +|++||+||||+++-+ .|.....+|+++ ++.+++.++.....+.
T Consensus 298 G~~~VEfiv-----------------d~d~g~~y~iEINpRl~g~----~~~te~vtGvDl---v~~~l~~a~G~~l~~~ 353 (1236)
T 3va7_A 298 CAGTVEFIY-----------------DEQRDEFYFLEVNARLQVE----HPITEMVTGLDL---VEWMLRIAANDSPDFD 353 (1236)
T ss_dssp EEEEEEEEE-----------------ETTTTEEEEEEEECSCCTT----HHHHHHHHCCCH---HHHHHHHHTTCCCCGG
T ss_pred ceEEEEEEE-----------------ECCCCcEEEEEEECCCCCc----cHHHHHHHCCCH---HHHHHHHHCCCCCCCc
Confidence 999999987 44 4789999999999743 244445689975 5566777777643322
Q ss_pred --CCCCcceecccccccCCCccccccCCCceEEEEecCC
Q 002207 464 --SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGG 500 (953)
Q Consensus 464 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG 500 (953)
.....++++.+|+.++++...|.++.+.++-....+|
T Consensus 354 ~~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g 392 (1236)
T 3va7_A 354 NTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPSW 392 (1236)
T ss_dssp GCCCCCCSEEEEEEEESEETTTTTEECCEECCEEECCTT
T ss_pred cccccccceEEEEEEecCCcccccCCCCceEEEEEcCCc
Confidence 1223469999999998887777776665544333333
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=268.43 Aligned_cols=242 Identities=13% Similarity=0.117 Sum_probs=186.2
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .++..|+.+|+|++|++..++.++.||..+|++|+++|||||++..+.+.+. +.+
T Consensus 66 ~~id~vv~g-----~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~e----a~~ 136 (431)
T 3mjf_A 66 HDIGLTIVG-----PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEA----ALA 136 (431)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHH----HHH
T ss_pred hCcCEEEEC-----CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHH----HHH
Confidence 479999984 2443 4788999999999999999999999999999999999999999998876442 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. ++||+||||..+++|.||.++++.+|+.+...+++.. ..+..+||||||+| +|+++.++.++.
T Consensus 137 ~~~~-----~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~--- 207 (431)
T 3mjf_A 137 YVRQ-----KGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMVDGE--- 207 (431)
T ss_dssp HHHH-----HCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEEESS---
T ss_pred HHHH-----cCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEEcCC---
Confidence 3322 5789999999999999999999999988777665421 12468999999997 999999996431
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHH----HHHHHHHhCC--CCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREG----ASLLFQRLGL--CDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~----a~~~~~aLg~--~G~a 387 (953)
..+.+... . +...+++++.++..++ +...+|++ +++++.+++++. +.++++++|+ +|+.
T Consensus 208 -~~~~~~~~--~----------~~~~~~~~~~g~~~gg-~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~ 273 (431)
T 3mjf_A 208 -NVLPMATS--Q----------DHKRVGDGDTGPNTGG-MGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFL 273 (431)
T ss_dssp -CEEECCCB--E----------ECCEEETTTEEEECSC-SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred -EEEEEEee--E----------eceecccCCCCCCCCC-ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 22222221 1 1345778887777665 56678988 999999999886 6788888887 7999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++||++ +++|++||+|+|++||.+.+.. +....|.++.++ ++..+..+
T Consensus 274 ~ve~~~-----------------~~~g~~~viEiN~R~G~~~~~~---i~~~~g~dl~~~---~~~~~~G~ 321 (431)
T 3mjf_A 274 YAGLMI-----------------SADGQPKVIEFNCRFGDPETQP---IMLRMRSDLVEL---CLAGTQGK 321 (431)
T ss_dssp EEEEEE-----------------CTTSCEEEEEECGGGSTTTHHH---HHHHBCSCHHHH---HHHHHTTC
T ss_pred EEEEEE-----------------eCCCCeEEEEEecCCCCcHHHH---HHHHHCCCHHHH---HHHHHcCC
Confidence 999986 6788899999999999655432 224579876544 45555555
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=264.92 Aligned_cols=237 Identities=18% Similarity=0.166 Sum_probs=179.2
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 60 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~----~~~ 130 (417)
T 2ip4_A 60 EGIDLTLVG-----PEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLE----ALA 130 (417)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHH----HHH
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHH
Confidence 479999996 3555 3567788999999999999999999999999999999999999988865432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccE
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v 318 (953)
+++. .+||+||||..+++|.||.++++.+|+.+....++...++..++||+||+| +|+++.++.+ |. .+
T Consensus 131 ~~~~-----~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~~~--G~---~~ 199 (417)
T 2ip4_A 131 YLEE-----VGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLALTD--GE---TI 199 (417)
T ss_dssp HHHH-----HCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEEES--SS---CE
T ss_pred HHHH-----cCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEEEe--CC---EE
Confidence 3322 578999999999999999999999998877665542234578999999997 9999999963 22 22
Q ss_pred Ee-cceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHH-HHHHHHHHHHh-----CCCCeeEeee
Q 002207 319 VL-LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI-REGASLLFQRL-----GLCDFARIDG 391 (953)
Q Consensus 319 ~l-~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i-~~~a~~~~~aL-----g~~G~arVDf 391 (953)
.. ...+. ....++++.++..++ +....|+.+++++.+++ ++++.+++++| +++|++++||
T Consensus 200 ~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~ 266 (417)
T 2ip4_A 200 LPLLPSQD------------HKRLLDGDQGPMTGG-MGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGL 266 (417)
T ss_dssp EECCCBEE------------CCEEETTTEEEECSC-SEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred EEcchhee------------chhhccCCCCCcCCC-CeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 21 21110 223555555555444 45668888999999888 77788888776 6789999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++ +++| +||+|||++||.+.+ ..+..+.|.++.+++..++
T Consensus 267 ~~-----------------~~~g-~~viEiN~R~g~~~~---~~i~~~~g~d~~~~~~~~~ 306 (417)
T 2ip4_A 267 ML-----------------TREG-PKVLEFNARFGDPEA---QALLPLLENDLVELALRVA 306 (417)
T ss_dssp EE-----------------CSSC-EEEEEEESSCCTTHH---HHHTTTBCSCHHHHHHHHH
T ss_pred EE-----------------eCCC-eEEEEEecCCCCcHH---HHHHHHhCCCHHHHHHHHH
Confidence 86 6778 999999999995422 1223357998877765544
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=260.86 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=199.5
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
++|||+|+.+|. +|+.+++++++.||+|+.++.+++.... .. .+..+... ......
T Consensus 10 ~~~~ili~g~g~---------~~~~~~~a~~~~G~~v~~~~~~~~~~~~------~~----~d~~~~~~-----~~d~~~ 65 (391)
T 1kjq_A 10 AATRVMLLGSGE---------LGKEVAIECQRLGVEVIAVDRYADAPAM------HV----AHRSHVIN-----MLDGDA 65 (391)
T ss_dssp TCCEEEEESCSH---------HHHHHHHHHHTTTCEEEEEESSTTCGGG------GG----SSEEEECC-----TTCHHH
T ss_pred CCCEEEEECCCH---------HHHHHHHHHHHcCCEEEEEECCCCCchh------hh----ccceEECC-----CCCHHH
Confidence 347999997763 5889999999999999877655432110 00 00000000 000111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccch
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~ 233 (953)
+.+. ...++|+|++...-. - -.+...|+.+|+ ++|+++.++.+++||..+|++| +++|||+|++..+.+.+.
T Consensus 66 l~~~~~~~~~d~v~~~~e~~-~--~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~-- 139 (391)
T 1kjq_A 66 LRRVVELEKPHYIVPEIEAI-A--TDMLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESL-- 139 (391)
T ss_dssp HHHHHHHHCCSEEEECSSCS-C--HHHHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHH--
T ss_pred HHHHHHHcCCCEEEECCCcC-C--HHHHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHH--
Confidence 1111 124799999976311 1 123456889999 5799999999999999999999 899999999998876432
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC--CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~--~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.++.++ ++||+||||..+++|.||.++++.+|+.+....++... .+..++||+||+|++|+++.++.+++
T Consensus 140 --~~~~~~~-----~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 140 --FREAVAD-----IGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp --HHHHHHH-----HCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred --HHHHHHh-----cCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 3333322 57899999999999999999999998776665544321 25689999999944999999997532
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+ .....+.+.. ...+++.. ...|+.++++..+++++++.+++++||++|++++||
T Consensus 213 g----~~~~~~~~~~------------~~~~~~~~---------~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~ 267 (391)
T 1kjq_A 213 G----VHFCAPVGHR------------QEDGDYRE---------SWQPQQMSPLALERAQEIARKVVLALGGYGLFGVEL 267 (391)
T ss_dssp E----EEECCCEEEE------------EETTEEEE---------EEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred C----eEEccCcceE------------EECCEEEE---------EEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 1 2222222111 01223322 235888999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++ +++ ++||+|||++||.+. .++.. ..|+++.++ +++.++..
T Consensus 268 ~~-----------------~~~-~~~viEiN~R~~~~~--~~~~~--~~g~~~~~~---~~~~~~G~ 309 (391)
T 1kjq_A 268 FV-----------------CGD-EVIFSEVSPRPHDTG--MVTLI--SQDLSEFAL---HVRAFLGL 309 (391)
T ss_dssp EE-----------------ETT-EEEEEEEESSCCGGG--GGHHH--HBSSCHHHH---HHHHHTTC
T ss_pred EE-----------------eCC-cEEEEEEECCCCCCc--ceeee--ecCcCHHHH---HHHHHcCC
Confidence 86 455 799999999999543 33333 348876444 45555544
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=252.23 Aligned_cols=271 Identities=10% Similarity=0.110 Sum_probs=184.9
Q ss_pred EEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHh
Q 002207 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEH 159 (953)
Q Consensus 80 V~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (953)
|+||..... .+++.++++|++.||+|+.++.+... ..+ .+ .. ..
T Consensus 2 I~il~~~~~-------~~~~~~~~a~~~~G~~v~~~~~~~~~--~~~----------~~----------~~-------~~ 45 (280)
T 1uc8_A 2 LAILYDRIR-------PDERMLFERAEALGLPYKKVYVPALP--MVL----------GE----------RP-------KE 45 (280)
T ss_dssp EEEEESSCC-------HHHHHHHHHHHHHTCCEEEEEGGGCC--EET----------TB----------CC-------GG
T ss_pred EEEEecCCC-------HHHHHHHHHHHHcCCcEEEEehhhce--eec----------cC----------CC-------cc
Confidence 788875433 46999999999999999877654321 000 00 00 00
Q ss_pred hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhh
Q 002207 160 LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239 (953)
Q Consensus 160 ~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~ 239 (953)
...+|+++...+|.+ +++.++++|+.+|+|++++ +.++.+++||..++++|+++|||+|++..+.+.+. +.++
T Consensus 46 -~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~----~~~~ 118 (280)
T 1uc8_A 46 -LEGVTVALERCVSQS-RGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVALAKAGLPQPKTALATDREE----ALRL 118 (280)
T ss_dssp -GTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEESC-HHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHH----HHHH
T ss_pred -cCCCCEEEECCccch-hhHHHHHHHHHCCCceeCC-HHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHH----HHHH
Confidence 126895555555533 6788999999999999965 99999999999999999999999999998876432 3333
Q ss_pred hhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh--HhcCCCCcEEEeccCCC-CeEEEEEEEEeCCCCccc
Q 002207 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI--ILEGIDDRVVVELFLEG-GSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 240 ~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~--~~~~~~~~vlVEefI~G-g~E~tv~Vl~~~~g~~~~ 316 (953)
++. .+||+||||..+++|.||.++++.+++.+....+ +....+..+|||+||+| +.|+++.+++ + .
T Consensus 119 ~~~-----~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~----~--~ 187 (280)
T 1uc8_A 119 MEA-----FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG----E--R 187 (280)
T ss_dssp HHH-----HCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEET----T--E
T ss_pred HHH-----hCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEEC----C--E
Confidence 322 5679999999999999999999888766544332 22112578999999996 5899999883 2 1
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+. . +.. . . .+|..++..++ . ..|+.+++ ++++.+.+++++||+ |++++||++
T Consensus 188 ~~~--~--~~~----------~-~-~~~~~~~~~g~-~--~~p~~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~--- 240 (280)
T 1uc8_A 188 AIA--A--IYR----------R-S-AHWITNTARGG-Q--AENCPLTE----EVARLSVKAAEAVGG-GVVAVDLFE--- 240 (280)
T ss_dssp EEE--E--EEC-----------------------------CEECCCCH----HHHHHHHHHHHHTTC-SEEEEEEEE---
T ss_pred EEE--E--EEE----------e-c-CCccccccCCc-c--ccCCCCCH----HHHHHHHHHHHHhCC-CeEEEEEEE---
Confidence 211 1 110 0 0 12333443333 1 24666765 678999999999999 999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
+++| +||+|||++||++. .+.++|+++.+++-+++
T Consensus 241 --------------~~~g-~~~iEiN~r~g~~~------~~~~~G~~~~~~~~~~~ 275 (280)
T 1uc8_A 241 --------------SERG-LLVNEVNHTMEFKN------SVHTTGVDIPGEILKYA 275 (280)
T ss_dssp --------------ETTE-EEEEEEETTCCCTT------HHHHHCCCHHHHHHHHH
T ss_pred --------------eCCC-eEEEEEeCCCCccc------hheeeccCHHHHHHHHH
Confidence 5566 99999999999874 35678999988765544
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=260.25 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=202.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||.. |+.++.++++.||+|+.++.+++.. ..... +. .... .+... +..
T Consensus 36 ~~IlIlG~G~l---------g~~~~~aa~~lG~~v~v~d~~~~~p------~~~~a----d~-~~~~----~~~d~-~~l 90 (419)
T 4e4t_A 36 AWLGMVGGGQL---------GRMFCFAAQSMGYRVAVLDPDPASP------AGAVA----DR-HLRA----AYDDE-AAL 90 (419)
T ss_dssp CEEEEECCSHH---------HHHHHHHHHHTTCEEEEECSCTTCH------HHHHS----SE-EECC----CTTCH-HHH
T ss_pred CEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCCcCc------hhhhC----CE-EEEC----CcCCH-HHH
Confidence 58999998863 8899999999999998764333211 11000 00 0000 00001 111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+..++|+|++-+. ..+..+...|+.. .++|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.
T Consensus 91 ~~~a~~~D~V~~~~e---~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e----~~ 161 (419)
T 4e4t_A 91 AELAGLCEAVSTEFE---NVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAA----LA 161 (419)
T ss_dssp HHHHHHCSEEEECCT---TCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHH----HH
T ss_pred HHHHhcCCEEEEccC---cCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHH----HH
Confidence 222247999996552 2344455666766 48899999999999999999999999999999998876432 22
Q ss_pred hhhhhcCCCC----CCCcEEEeeC-CCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 238 NWFVTNKLDP----NSGKVVVKPT-RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 238 ~~~~~~~l~~----~~~PvvVKP~-~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
++. +. + ||+||||. .+++|+|+.++++.+|+.+....+ .+..+|||+||+|++|+++.++++.+|
T Consensus 162 ~~~-----~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~Eisv~v~~~~~G 231 (419)
T 4e4t_A 162 ALD-----DAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKYEVSALIARGADG 231 (419)
T ss_dssp TSC-----HHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEEEEEEEEEECTTS
T ss_pred HHH-----Hhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCeEEEEEEEEcCCC
Confidence 221 23 6 89999999 778889999999999987665542 357899999999669999999975433
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
..+.+++.+... .++++ .....|+. +++++.++++++|.+++++||++|+++|||
T Consensus 232 ---~~~~~~~~e~~~----------~~g~~-----------~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~ 287 (419)
T 4e4t_A 232 ---RSAAFPLAQNVH----------HNGIL-----------ALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEF 287 (419)
T ss_dssp ---CEEECCCEEEEE----------ETTEE-----------EEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ---CEEEEeCeEEEe----------eCCeE-----------EEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEE
Confidence 344445443221 11111 12356888 999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++ +++|++||+||||+||.+.+ +. ...+|+|.- ...++.++..
T Consensus 288 ~~-----------------~~dG~~~v~EiNpR~~~sg~--~t--~~~~~~s~~---~~~~ra~~G~ 330 (419)
T 4e4t_A 288 FV-----------------LEDGSFVANEMAPRPHNSGH--YT--VDACATSQF---EQQVRAMTRM 330 (419)
T ss_dssp EE-----------------ETTCCEEEEEEESSCCGGGT--TH--HHHBSSCHH---HHHHHHHTTC
T ss_pred EE-----------------eCCCCEEEEEEeCCCCCCCC--eE--eeccCCCHH---HHHHHHHcCC
Confidence 87 57889999999999996543 22 246799853 3444544543
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=258.64 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=187.3
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|++..++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 82 ~~id~vv~g-----~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~e----a~~ 152 (442)
T 3lp8_A 82 EKIELVVIG-----PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNS----AYK 152 (442)
T ss_dssp TTCCEEEEC-----SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHH----HHH
T ss_pred hCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHH----HHH
Confidence 479999983 4555 3677899999999999999999999999999999999999999998876442 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-CC---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GI---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-~~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++ .++||+||||..+++|.||.++++.+|+.+...+++.. .+ +..+||||||+| +|+++.++.++.
T Consensus 153 ~~~-----~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~--- 223 (442)
T 3lp8_A 153 FID-----KHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEISFFTLVDGS--- 223 (442)
T ss_dssp HHH-----HSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEESS---
T ss_pred HHH-----HcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEEEEEEEECCC---
Confidence 332 26789999999999999999999999988777766532 22 268999999997 999999996431
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHH----HHHHHHHhCC--CCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREG----ASLLFQRLGL--CDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~----a~~~~~aLg~--~G~a 387 (953)
..+.+.. .. . ...+++++.++..++ +...+|++ +++++.+++++. +.++++++|+ +|+.
T Consensus 224 -~~~~~~~--~~--~--------~~~~~~~~~g~~~gg-~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~ 289 (442)
T 3lp8_A 224 -NPVILGV--AQ--D--------YKTIGDNNKGPNTGG-MGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLL 289 (442)
T ss_dssp -CEEEEEE--EE--E--------CCEEEGGGEEEECSC-SEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred -eEEEeEE--eE--e--------eeecccCCCCCCCCC-cEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 1222221 11 1 345778887776655 56667997 999999999987 9999999998 7999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
++||++ +++| +||+|+|++||.+.+.. +....|.+ +++.++..+..+.+
T Consensus 290 ~ve~~~-----------------~~~g-~~viEiN~R~g~~~~~~---~~~~~~~d---l~~~~~~~~~G~l~ 338 (442)
T 3lp8_A 290 FAGIII-----------------KKNE-PKLLEYNVRFGDPETQS---ILPRLNSD---FLKLLSLTAKGKLG 338 (442)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTHHHH---HGGGBCSC---HHHHHHHHHHTCCS
T ss_pred EEEEEE-----------------eCCC-eEEEEEecCCCCCchhh---hHHHhCCC---HHHHHHHHHcCCCC
Confidence 999987 5677 99999999999654322 22345765 55566666666644
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=254.53 Aligned_cols=263 Identities=13% Similarity=0.062 Sum_probs=192.3
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+||.||+- |+.++.+.++.||+| ++.|++. +. ..+ .
T Consensus 3 ~igilGgGql---------g~m~~~aa~~lG~~v--~~~~~~a------~~-----------~~~----------~---- 40 (355)
T 3eth_A 3 QVCVLGNGQL---------GRMLRQAGEPLGIAV--WPVGLDA------EP-----------AAV----------P---- 40 (355)
T ss_dssp EEEEESCSHH---------HHHHHHHHGGGTCEE--EEECTTC------CG-----------GGC----------C----
T ss_pred EEEEECCCHH---------HHHHHHHHHHCCCEE--ECCCCCC------Cc-----------eEE----------c----
Confidence 6999999943 899999999999999 4444431 10 000 0
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
+ ++|+|.+-+. ....+ .-..|+..| ++++++.++++++||..+|++|+++|||||++..+.+.+. +.+
T Consensus 41 -l--~~d~it~e~e-~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~~e----~~~ 108 (355)
T 3eth_A 41 -F--QQSVITAEIE-RWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSE----WPA 108 (355)
T ss_dssp -C--TTSEEEESCS-CCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGG----HHH
T ss_pred -c--cCCEEEECcC-CcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCHHH----HHH
Confidence 1 6899999874 22222 334556666 5799999999999999999999999999999998876543 223
Q ss_pred hhhhcCCCCCCCcEEEeeCCC-CCceeEEEeCC--HHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRA-GSSIGVTVAYG--VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~-gsS~GV~~v~~--~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
+.+ .++||+||||+++ ++|+|++++++ .+|+.+.. ++ ++|||+||++++|++|.++++.+|
T Consensus 109 ~~~-----~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~-------~~-~vivEe~I~~~~Eisv~v~~~~~G--- 172 (355)
T 3eth_A 109 VFD-----RLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC-------YG-ECIVEQGINFSGEVSLVGARGFDG--- 172 (355)
T ss_dssp HHH-----HHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG-------TT-TEEEEECCCCSEEEEEEEEECTTS---
T ss_pred HHH-----HcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh-------hC-CEEEEEccCCCcEEEEEEEEcCCC---
Confidence 332 2678999999996 56799999999 88866421 23 699999999669999999975433
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
...++++.|... .+++++ ....|+.+++++.++++++|.+++++||++|+.+|||++
T Consensus 173 ~~~~~p~~e~~~----------~~g~~~-----------~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~-- 229 (355)
T 3eth_A 173 STVFYPLTHNLH----------QDGILR-----------TSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFV-- 229 (355)
T ss_dssp CEEECCCEEEEE----------ETTEEE-----------EEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEE--
T ss_pred CEEEECCEEEEe----------eCCeEE-----------EEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEE--
Confidence 345556655321 112221 123688899999999999999999999999999999987
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++||+||||+|+.+.+ +.. ..+|+|. ++..++.++.
T Consensus 230 ---------------~~-~~~~v~EinpR~~~sg~--~t~--~~~~~s~---fe~~~ra~~G 268 (355)
T 3eth_A 230 ---------------TP-QGLLINELAPRVHNSGH--WTQ--NGASISQ---FELHLRAITD 268 (355)
T ss_dssp ---------------ET-TEEEEEEEESSCCGGGT--THH--HHSSSCH---HHHHHHHHTT
T ss_pred ---------------EC-CcEEEEEeeCCCCCCcc--EEe--eeecCCH---HHHHHHHHcC
Confidence 43 57999999999997654 222 3678873 3344444444
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=260.55 Aligned_cols=237 Identities=22% Similarity=0.199 Sum_probs=178.0
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 131 (424)
T 2yw2_A 61 EGVDFTIVG-----PEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEK----AKE 131 (424)
T ss_dssp HTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH----HHH
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 479999995 3555 3567789999999999999999999999999999999999999998866432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. .+||+||||..+++|.||.++++.+|+.+....++... + ...++||+||+| +|+++.++.+ |.
T Consensus 132 ~~~~-----~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~~--G~- 202 (424)
T 2yw2_A 132 YVEK-----VGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEASYIVMIN--GD- 202 (424)
T ss_dssp HHHH-----HCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE--TT-
T ss_pred HHHH-----cCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEEEEEEEc--CC-
Confidence 3322 57899999999999999999999999887766554311 1 358999999997 9999999963 22
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHh-----CCCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRL-----GLCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL-----g~~G~a 387 (953)
.+...+.... ...+++++.++..++ +...+|+. +++++.++++ +++.+++++| +++|++
T Consensus 203 --~~~~~~~~~~-----------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (424)
T 2yw2_A 203 --RYVPLPTSQD-----------HKRLLDEDKGPNTGG-MGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFL 268 (424)
T ss_dssp --EEEECCCBEE-----------CCEEETTTEEEECSC-SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEE
T ss_pred --EEEeecceee-----------ccccccCCCCCCCCC-CeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 2221111110 234566666665444 55678987 9999999884 7888888776 678999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++||++ +++| +||+|||++||.+.+. .+..+.|.++.+++..+
T Consensus 269 ~ve~~~-----------------~~~g-~~viEiN~R~g~~~~~---~i~~~~g~d~~~~~~~~ 311 (424)
T 2yw2_A 269 YAGLMI-----------------TKEG-PKVLEFNVRLGDPEAQ---PILMRVKNDFLETLLNF 311 (424)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTTHH---HHHHTBCSCHHHHHHHH
T ss_pred EEEEEE-----------------eCCC-cEEEEEecCCCCcHHH---HHHHHhCCCHHHHHHHH
Confidence 999986 5678 9999999999955322 23346799877665443
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=260.84 Aligned_cols=237 Identities=18% Similarity=0.163 Sum_probs=172.1
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 82 ~~~d~vi~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 152 (451)
T 2yrx_A 82 QAIDLTIVG-----PEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEE----AKA 152 (451)
T ss_dssp TTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH----HHH
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 579999984 3554 3566788999999999999999999999999999999999999988876432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. ++||+||||..+++|.||.++++.+|+.+...+++... + ...+|||+||+| +|++|.++.+ |.
T Consensus 153 ~~~~-----~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~- 223 (451)
T 2yrx_A 153 YIEQ-----KGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EEFSFMAFVN--GE- 223 (451)
T ss_dssp HHHH-----HCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EEEEEEEEEE--TT-
T ss_pred HHHh-----cCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cEEEEEEEEc--CC-
Confidence 3322 56899999999999999999999999877666554311 2 368999999997 9999999963 22
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHH-HHHHHHHHHHh-----CCCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSI-REGASLLFQRL-----GLCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i-~~~a~~~~~aL-----g~~G~a 387 (953)
.+...+. ... ...+++++.++..++ +...+|+. +++++.+++ ++++.++.++| ++.|+.
T Consensus 224 --~~~~~~~-~~~----------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 289 (451)
T 2yrx_A 224 --KVYPLAI-AQD----------HKRAYDGDEGPNTGG-MGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVL 289 (451)
T ss_dssp --EEEECCC-BEE----------CCEEETTTEEEECSC-SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred --EEEEeee-EEe----------ccccccCCCCCCCCC-CeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 2221111 110 234556655554444 45668987 999998888 77777777765 578999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++||++ +++| +||+|||++||.+.+ ..+..+.|.++.+++..+
T Consensus 290 ~ve~~~-----------------~~~g-~~viEiN~R~g~~~~---~~i~~~~g~d~~~~~~~~ 332 (451)
T 2yrx_A 290 YAGLMA-----------------TANG-PKVIEFNARFGDPEA---QVVLPRLKTDLVEAVLAV 332 (451)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTHH---HHHGGGBCSCHHHHHHHH
T ss_pred EEEEEE-----------------eCCC-cEEEEEecCCCCcHH---HHHHHHcCCCHHHHHHHH
Confidence 999986 5678 999999999995432 223346799887765543
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=261.57 Aligned_cols=300 Identities=13% Similarity=0.044 Sum_probs=196.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|+.+|. +|+.+++++++.||+|+.++.+++....... .........+ ...+
T Consensus 19 ~~~ili~g~g~---------~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~a-d~~~~~~~~d--------------~~~l 74 (433)
T 2dwc_A 19 AQKILLLGSGE---------LGKEIAIEAQRLGVEVVAVDRYANAPAMQVA-HRSYVGNMMD--------------KDFL 74 (433)
T ss_dssp CCEEEEESCSH---------HHHHHHHHHHHTTCEEEEEESSTTCHHHHHS-SEEEESCTTC--------------HHHH
T ss_pred CCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCChhhhhc-ceEEECCCCC--------------HHHH
Confidence 46899997763 5889999999999999887765442110000 0000000000 1111
Q ss_pred HHhh-ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccchh
Q 002207 157 AEHL-AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 157 ~~~~-~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~~ 234 (953)
.+.. ..++|+|++...... -.+...|+.+|+ ++|+++.++.+++||..+|++| +++|||+|++..+.+.+.
T Consensus 75 ~~~~~~~~~d~V~~~~e~~~---~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~--- 147 (433)
T 2dwc_A 75 WSVVEREKPDAIIPEIEAIN---LDALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDE--- 147 (433)
T ss_dssp HHHHHHHCCSEEEECSSCSC---HHHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHH---
T ss_pred HHHHHHcCCCEEEECcccCC---HHHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHH---
Confidence 1111 247999999874111 234466899999 6799999999999999999999 899999999998876432
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC--CCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~--~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
+.++.+ .++||+||||..+++|.||.++++.+|+.+....++... .+..++||+||++++|+++.++.+..
T Consensus 148 -~~~~~~-----~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~- 220 (433)
T 2dwc_A 148 -LYEACE-----KIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFD- 220 (433)
T ss_dssp -HHHHHH-----HHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEEC-
T ss_pred -HHHHHH-----hcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEeccc-
Confidence 333332 257899999999999999999999999876665443211 25689999999944999999996420
Q ss_pred Ccccc--EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 313 FDCHP--VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 313 ~~~~~--v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
.++.+ ....+.+.. ...+++. ....|+.+++++.+++++++.+++++||++|++++|
T Consensus 221 ~~G~~~~~~~~~~~~~------------~~~~~~~---------~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve 279 (433)
T 2dwc_A 221 ENGEIVTTFPKPVGHY------------QIDGDYH---------ASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVE 279 (433)
T ss_dssp TTSCEEEEEECCEEEE------------ESSSSEE---------EEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEE
T ss_pred CCCCEeEEEecccceE------------EEcCEEE---------EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEE
Confidence 01222 111221110 0112222 223588899999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|++ +++ ++||+|||++||.+ ..++....+.|+++.++ +++.++..
T Consensus 280 ~~~-----------------~~~-~~~viEiN~R~~~~--~~~~~~~~~~g~~~~~~---~~~~~~G~ 324 (433)
T 2dwc_A 280 MFV-----------------KGD-KVWANEVSPRPHDT--GMVTLASHPPGFSEFAL---HLRAVLGL 324 (433)
T ss_dssp EEE-----------------ETT-EEEEEEEESSCCGG--GGGHHHHSCTTCSHHHH---HHHHHHTC
T ss_pred EEE-----------------eCC-cEEEEEEeCCcCCC--cceehhHhccCCCHHHH---HHHHHcCC
Confidence 987 455 79999999999954 33454444569986544 44455554
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=260.80 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=173.7
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 87 ~~~d~V~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 157 (452)
T 2qk4_A 87 KKIEFVVVG-----PEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEE----ACS 157 (452)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHH----HHH
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH----HHH
Confidence 479999984 4665 4556778899999999999999999999999999999999999998876432 333
Q ss_pred hhhhcCCCCCCCc-EEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 239 WFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 239 ~~~~~~l~~~~~P-vvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
+++ .++|| +||||..+++|.||.++++.+|+.+...+++... + +..+|||+||+| +|++|.++.+ |.
T Consensus 158 ~~~-----~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~ 229 (452)
T 2qk4_A 158 FIL-----SADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG-EEVSCLCFTD--GK 229 (452)
T ss_dssp HHH-----HCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-EEEEEEEEEC--SS
T ss_pred HHH-----hCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CeEEEEEEEC--CC
Confidence 332 26789 9999999999999999999999887666553211 1 368999999997 9999999962 22
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHh-----CCCCe
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRL-----GLCDF 386 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL-----g~~G~ 386 (953)
..+.+...+- ...+++++.++..++ +...+|+. +++++.++++ +++.+++++| +++|+
T Consensus 230 --~~~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~ 294 (452)
T 2qk4_A 230 --TVAPMPPAQD------------HKRLLEGDGGPNTGG-MGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGI 294 (452)
T ss_dssp --CEEECCCBEE------------EEEEETTTEEEEEEE-EEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEE
T ss_pred --EEEEcceeee------------cccccCCCCCCCCCC-ceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 1222222211 123455555554333 45668988 9999999886 6888888776 45799
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
+++||++ +++| +||+|||++||.+.+. .+..+.|.++.+++..++
T Consensus 295 ~~ve~~~-----------------~~~g-~~viEiN~R~~~~~~~---~i~~~~g~d~~~~~~~~~ 339 (452)
T 2qk4_A 295 LYAGIML-----------------TKNG-PKVLEFNCRFGDPECQ---VILPLLKSDLYEVIQSTL 339 (452)
T ss_dssp EEEEEEE-----------------ETTE-EEEEEEESSCCTTTHH---HHGGGBCSCHHHHHHHHH
T ss_pred EEEEEEE-----------------eCCC-cEEEEEeccCCCcHHH---HHHHHhCCCHHHHHHHHH
Confidence 9999986 5678 9999999999954321 133457998877765544
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=254.89 Aligned_cols=237 Identities=16% Similarity=0.128 Sum_probs=175.5
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 131 (422)
T 2xcl_A 61 NQVGLTIVG-----PEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDE----AKA 131 (422)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH----HHH
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 479999984 3555 3556788999999999999999999999999999999999999998876432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. .+||+||||..+++|.||.++++.+|+.+...+++... + ...+|||+||+| +|+++.++.+ |.
T Consensus 132 ~~~~-----~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~d--G~- 202 (422)
T 2xcl_A 132 YVQE-----KGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFSLMAFVK--GE- 202 (422)
T ss_dssp HHHH-----HCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE--TT-
T ss_pred HHHh-----cCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEEEEEEEc--CC-
Confidence 3322 56899999999999999999999999887666554311 1 368999999997 9999999963 22
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHh-----CCCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRL-----GLCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL-----g~~G~a 387 (953)
.+........ ...+++++.++..++ +...+|+. +++++.++++ +++.+++++| +++|+.
T Consensus 203 --~~~~~~~~~~-----------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 203 --KVYPMVIAQD-----------HKRAFDGDKGPNTGG-MGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp --EEEECCCBEE-----------EEEEEGGGEEEEEEE-EEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred --EEEecceeee-----------eehhcCCCCCCCCCC-CeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1211111010 123555555554333 45668987 9999988885 4788887776 678999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++||++ +++| +||+|||++||.+.+. .+..+.|.++.+++..+
T Consensus 269 ~vd~~~-----------------~~~g-~~viEiN~R~g~~~~~---~i~~~~g~d~~~~~~~~ 311 (422)
T 2xcl_A 269 YAGLML-----------------TENG-SKVIEFNARFGDPETQ---VVLPRMESDLVQVLLDL 311 (422)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTTHH---HHGGGBCSCHHHHHHHH
T ss_pred EeeEEE-----------------eCCC-cEEEEEecCCCCcHHH---HHHHhcCCCHHHHHHHH
Confidence 999986 5678 9999999999965432 13346899887766544
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=280.00 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=184.7
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc---------ccccCcchhHHHh-hccCcCEE
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL---------AQGFGSLSEFAEH-LAANVDIV 167 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~D~v 167 (953)
|..+++++++.|++++.++-+.+........ .|..+.+... ...+.....+.+. ...++|+|
T Consensus 26 a~riiraa~elGi~vvav~s~~d~~a~~~~~--------ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V 97 (1165)
T 2qf7_A 26 AIRVFRAANELGIKTVAIWAEEDKLALHRFK--------ADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAI 97 (1165)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGTTCHHHHS--------SSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHcCCEEEEEECCCcccchhHHh--------CCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEE
Confidence 7889999999999999888655422110000 0000000000 0000001111111 13479999
Q ss_pred EEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccchhhhhhhhhhcCC
Q 002207 168 FPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKL 245 (953)
Q Consensus 168 f~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~l 245 (953)
+|.. |...|+..++..|+.+|+||+|+++.++.++.||..+|++|+++|||+|++. .+.+.+. +.++.
T Consensus 98 ~pg~-g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~ee----a~~~a----- 167 (1165)
T 2qf7_A 98 HPGY-GLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAE----VAKMA----- 167 (1165)
T ss_dssp ECCS-STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC--------------------------
T ss_pred EECC-CchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHH----HHHHH-----
Confidence 9984 6778999999999999999999999999999999999999999999999987 4544332 22222
Q ss_pred CCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec
Q 002207 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321 (953)
Q Consensus 246 ~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~ 321 (953)
..++||+||||..+++|+||.+|++.+|+.+....+... . .+..++||+||+|++|++|.++.++.| ..+.+.
T Consensus 168 ~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G---~vv~l~ 244 (1165)
T 2qf7_A 168 AAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHG---NVVHLF 244 (1165)
T ss_dssp ----------------------------------------------------CCCSSEEEEEEEEEECTTS---CEEEEE
T ss_pred HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCC---cEEEEE
Confidence 247899999999999999999999999877655443321 1 246799999999669999999975433 222221
Q ss_pred ceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcc
Q 002207 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 322 ~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~ 400 (953)
..... +..+ ........|+ .+++++.++|++.+.++++++|++|++++||++
T Consensus 245 ~r~~s--------------~~r~------~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~v------- 297 (1165)
T 2qf7_A 245 ERDCS--------------VQRR------NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLM------- 297 (1165)
T ss_dssp EEEEE--------------EEET------TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE-------
T ss_pred eeccc--------------ceec------ccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEE-------
Confidence 11000 1111 1124456787 599999999999999999999999999999986
Q ss_pred ccccccccCcc-cCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC-CCCC--C-----CCCccee
Q 002207 401 FSSSETKYGST-EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF-PNLA--S-----YNSVSSH 471 (953)
Q Consensus 401 ~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~-~~~~--~-----~~~~~~~ 471 (953)
+ ++|++||+||||++|.+. +.....+|+++.+ .+++.++... +... . ....+++
T Consensus 298 ----------d~~dg~~~~iEiNpR~~~~~----~vte~~tGiDl~~---~~i~~a~G~~l~~~~~g~p~q~~~~~~g~A 360 (1165)
T 2qf7_A 298 ----------DADTGKFYFIEVNPRIQVEH----TVTEVVTGIDIVK---AQIHILDGAAIGTPQSGVPNQEDIRLNGHA 360 (1165)
T ss_dssp ----------ETTTTEEEEEEEECSCCTTH----HHHHHHHCCCHHH---HHHHHHTTCCTTSGGGTCCCGGGCCCCSEE
T ss_pred ----------ECCCCCEEEEEEEcCCCCCc----hhhhhhhCCCHHH---HHHHHHcCCCccccccccccccccccCcEE
Confidence 5 678999999999999542 3334568997655 4666666642 2110 1 1234689
Q ss_pred cccccccCCCccccccCCCceE
Q 002207 472 LPGRSSGSKPTEALNKREGIRE 493 (953)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (953)
+++|+.+++|...|.+..++++
T Consensus 361 i~~ri~ae~P~~~f~p~~G~I~ 382 (1165)
T 2qf7_A 361 LQCRVTTEDPEHNFIPDYGRIT 382 (1165)
T ss_dssp EEEEEESEETTTTTEECCEECC
T ss_pred EEEEEEecCCccCcCCCCcEEE
Confidence 9999999888767777666554
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=256.41 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=177.0
Q ss_pred HHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--E--
Q 002207 626 EWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--R-- 700 (953)
Q Consensus 626 ~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v-- 700 (953)
..++.+ +..+|+|+|. ||..+|++.++.+|+.+|+||+|+++.++.+++||..+|++ |+++|||||++.. +
T Consensus 130 ~Il~~a~~~~vdaV~pG-~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~l---l~~aGVPvpp~~~~~l~~ 205 (587)
T 3jrx_A 130 LIVDIAKRIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVV---AQTLQVPTLPWSGSGLTV 205 (587)
T ss_dssp HHHHHHHHTTCSEEECC-SSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHH---HHHTTCCBCCBTTTTCCC
T ss_pred HHHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHH---HHHcCCCCCCeecccccc
Confidence 344443 3568898888 89999999999999999999999999999999999999999 9999999999864 1
Q ss_pred eCc-c-----------------ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhC
Q 002207 701 RKE-D-----------------LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRI 762 (953)
Q Consensus 701 ~~~-~-----------------~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~ 762 (953)
... + ....+ .+.+.++.+++ +||+||||+.+++|+||.+|++.+||.. +++.+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~s-~eea~~~a~~i-GyPvVVKp~~GgGGkGv~iV~s~eEL~~---a~~~a~~~~ 280 (587)
T 3jrx_A 206 EWTEDDLQQGKRISVPEDVYDKGCVKD-VDEGLEAAERI-GFPLMIKASEGGGGKGIRKAESAEDFPI---LFRQVQSEI 280 (587)
T ss_dssp CC------CCCCCCCCHHHHHTTSCCS-HHHHHHHHHHH-CSSEEEEETTCCSSSSEEEECSTTTHHH---HHHHHHHHS
T ss_pred cccccccccccccccchhhccccccCC-HHHHHHHHHhc-CCeEEEEeCCCCCCCCeEEeCCHHHHHH---HHHHHHhhc
Confidence 000 0 00001 22344556788 6999999999999999999999999986 455554431
Q ss_pred CCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEe
Q 002207 763 PPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVK 841 (953)
Q Consensus 763 ~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~ 841 (953)
.+..++||+||+|. +|++|.++++. |..+.+.+...
T Consensus 281 -----------------~~~~vlVEeyI~g~------------------------rei~V~vl~D~~G~vv~l~~rd~-- 317 (587)
T 3jrx_A 281 -----------------PGSPIFLMKLAQHA------------------------RHLEVQILADQYGNAVSLFGRDC-- 317 (587)
T ss_dssp -----------------TTCCEEEEECCCSC------------------------EEEEEEEEECSSSCEEEEEEEEE--
T ss_pred -----------------cCCCEEEEEecCCC------------------------cEEEEEEEEcCCCCEEEEeeeec--
Confidence 14689999999994 49999999986 44433322111
Q ss_pred cCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 842 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 842 ~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.++.+..|+ ....|++. +++++.+++.+.+.+++++||+.|+++|||+++. +|++||+||||+|+.+
T Consensus 318 ---siqrr~qk~-----ie~aPa~~--l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 318 ---SIQRRHQKI-----VEEAPATI--APLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVE 384 (587)
T ss_dssp ---EEESSSCEE-----EEEESCCS--SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SSCEEEEEEESSCCTT
T ss_pred ---cccccccce-----eEecCCCC--CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEeCCCCCc
Confidence 122223333 22457663 5899999999999999999999999999999985 6899999999999864
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-25 Score=247.74 Aligned_cols=269 Identities=19% Similarity=0.121 Sum_probs=182.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||. +|..++.++++.||+|+.++-+++.. ... .+|- ++..... ...+..
T Consensus 2 K~I~ilGgg~---------~g~~~~~~Ak~~G~~vv~vd~~~~~~------~~~----~aD~-~~~~~~~----~d~~~~ 57 (363)
T 4ffl_A 2 KTICLVGGKL---------QGFEAAYLSKKAGMKVVLVDKNPQAL------IRN----YADE-FYCFDVI----KEPEKL 57 (363)
T ss_dssp CEEEEECCSH---------HHHHHHHHHHHTTCEEEEEESCTTCT------TTT----TSSE-EEECCTT----TCHHHH
T ss_pred CEEEEECCCH---------HHHHHHHHHHHCCCEEEEEeCCCCCh------hHh----hCCE-EEECCCC----cCHHHH
Confidence 5899998884 47888899999999999876544321 100 0110 0000000 001111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
....+++|+|+|..+.. .+....+.+++..++| +|+++.++.+++||..+|++|+++|+|+|++.
T Consensus 58 ~~~~~~~D~v~~~~~~~-~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~------------- 122 (363)
T 4ffl_A 58 LELSKRVDAVLPVNENL-ACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR------------- 122 (363)
T ss_dssp HHHHTSSSEEEECCCCH-HHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS-------------
T ss_pred HHHhcCCCEEEECCCCh-hHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce-------------
Confidence 22345899999987532 2345677889999997 58999999999999999999999999998752
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
.++||+||||+.+++|.|+.++++.+++. .....+++|+||+| +|+++.++.++.+ .
T Consensus 123 ---------~ig~P~vvKp~~g~g~~gv~~v~~~~~~~---------~~~~~~~~ee~i~g-~e~sv~~~~d~~~----~ 179 (363)
T 4ffl_A 123 ---------PSKPPYFVKPPCESSSVGARIIYDDKDLE---------GLEPDTLVEEYVEG-EVVSLEVVGDGSH----F 179 (363)
T ss_dssp ---------CSSSCEEEECSSCCTTTTCEEEC---------------CCCTTCEEEECCCS-EEEEEEEEEESSC----E
T ss_pred ---------ecCCCEEEEECCCCCCcCeEEeccHHHhh---------hhccchhhhhhccC-cEEEEEEEEECCe----E
Confidence 26789999999999999999999988743 24678999999998 9999999975432 2
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~ 397 (953)
++....+ ... . . .. ......|+...+ +++++|.+++++||++|+.+|||++
T Consensus 180 ~~~~~~~-~~~------------~----~---~~-~~~~~~p~~~~~----~~~~~a~~~~~~l~~~G~~~vef~~---- 230 (363)
T 4ffl_A 180 AVVKETL-VHI------------D----E---TY-DCHMVTPLPANP----LFRQISHDLAANLPLKGIMDVEAIF---- 230 (363)
T ss_dssp EECCCEE-EEE------------C----T---TS-CEEEEEECCCCH----HHHHHHHHHHHTTTCEEEEEEEEEE----
T ss_pred EEEEEEE-ecc------------C----C---cc-cceeecchhHHH----HHHHHHHHHHHhCCccceeeeeeEE----
Confidence 2222221 110 0 0 01 134456666654 4678999999999999999999986
Q ss_pred CccccccccccCcccCCcEEEEeecCC-CCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++ .+||+||||+ ||.+++ .....+|+|+.++ +++.++..
T Consensus 231 -------------~~~-~~~viEiN~R~~g~~~~----~~~~~~g~dl~~~---~~~~~~g~ 271 (363)
T 4ffl_A 231 -------------GPK-GLRVIEIDARFPSQTPT----VVYYSSGINLIEL---LFRAFTDG 271 (363)
T ss_dssp -------------ETT-EEEEEEEECSCCSSHHH----HHHHHHCCCHHHH---HHHHTTTC
T ss_pred -------------eCC-eEEEEEEeCCCCCChHH----HHHHHHCcCHHHH---HHHHHCCC
Confidence 444 5999999997 565432 2334689986544 45554544
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=255.66 Aligned_cols=232 Identities=19% Similarity=0.231 Sum_probs=169.5
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--E-
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--R- 700 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v- 700 (953)
+..++.++ ..+|+|+|. ||..+|++.++++|+.+|+||+|+++.++++++||..+|++ |+++|||+|++.. +
T Consensus 113 ~~ii~~a~~~~~daI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~l---l~~~GVPvp~~~~~~l~ 188 (540)
T 3glk_A 113 ELIVDIAKRIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVV---AQTLQVPTLPWSGSGLT 188 (540)
T ss_dssp HHHHHHHHHTTCSEEECC-SSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHH---HHHTTCCBCCBTTTTCC
T ss_pred HHHHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHH---HHHcCCCCCCccccccc
Confidence 34444433 567999887 89999999999999999999999999999999999999999 9999999999864 1
Q ss_pred -eCccc------------------cCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhh
Q 002207 701 -RKEDL------------------LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLR 761 (953)
Q Consensus 701 -~~~~~------------------~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~ 761 (953)
..... ...+ .+.+.++.+++ +||+||||+.+++|+||.+|++.+||.. +++.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~s-~~ea~~~a~~i-gyPvVVKp~~ggGG~Gv~iv~~~~eL~~---a~~~~~~~ 263 (540)
T 3glk_A 189 VEWTEDDLQQGKRISVPEDVYDKGCVKD-VDEGLEAAERI-GFPLMIKASEGGGGKGIRKAESAEDFPI---LFRQVQSE 263 (540)
T ss_dssp CCCCCTTC----CCCCCHHHHHHTSCCS-HHHHHHHHHHH-CSSEEEEETTCC----EEEECSTTTHHH---HHHHHHHH
T ss_pred ccccccccccccccccccccccccCcCC-HHHHHHHHHhc-CCcEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHhh
Confidence 00000 0001 22344556778 6999999999999999999999999986 45555443
Q ss_pred CCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEE
Q 002207 762 IPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTV 840 (953)
Q Consensus 762 ~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i 840 (953)
. .+..++||+||+|. +|++|.++++. |..+.+.+...
T Consensus 264 ~-----------------~~~~vlVEe~I~g~------------------------rei~V~vl~d~~G~vv~l~~rd~- 301 (540)
T 3glk_A 264 I-----------------PGSPIFLMKLAQHA------------------------RHLEVQILADQYGNAVSLFGRDC- 301 (540)
T ss_dssp S-----------------TTCCEEEEECCSSE------------------------EEEEEEEEECTTSCEEEEEEEEE-
T ss_pred c-----------------cCCCEEEEEecCCC------------------------cEEEEEEEEcCCCCEEEEeceee-
Confidence 1 14689999999994 49999999986 44433322111
Q ss_pred ecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 841 ~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.++.+..|+ ....|++. +++++.+++.+.+.+++++||++|+++|||+++. +|++||+||||+|+.+
T Consensus 302 ----s~qr~~~k~-----ie~~Pa~~--l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~-dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 302 ----SIQRRHQKI-----VEEAPATI--APLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVE 368 (540)
T ss_dssp ----EEC---CCS-----EEEESCTT--SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEEECSCCTT
T ss_pred ----eeeecccce-----EEecCCCC--CCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCCEEEEEEECCCCCc
Confidence 122222333 23457663 5899999999999999999999999999999985 6899999999999864
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=244.41 Aligned_cols=222 Identities=18% Similarity=0.149 Sum_probs=142.2
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++..++.......+++.|+..|+|++|+++.++.+++||+.++++|+++|||+|+++... +++.+++.
T Consensus 71 ~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~------~~~~~~~~ 144 (331)
T 2pn1_A 71 EGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATM------ASFEEALA 144 (331)
T ss_dssp HTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSH------HHHHHHHH
T ss_pred cCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEecH------HHhhhhhh
Confidence 479999998754333344567888989999999999999999999999999999999999986421 12222221
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe-CCCCccccEEe
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV-GSGFDCHPVVL 320 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~-~~g~~~~~v~l 320 (953)
. ...+||+||||..+++|.||.++++.+|+.+... ....++||+||+| +|+++.++.+ .+ +..+.+
T Consensus 145 ~---~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~------~~~~~lvee~i~G-~e~~v~~~~d~~~---G~~~~~ 211 (331)
T 2pn1_A 145 A---GEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFS------KNTDLIVQELLVG-QELGVDAYVDLIS---GKVTSI 211 (331)
T ss_dssp T---TSSCSCEEEEESBC-----------------------------CEEEEECCCS-EEEEEEEEECTTT---CCEEEE
T ss_pred c---ccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHH------hCCCeEEEecCCC-cEEEEEEEEecCC---CeEEEE
Confidence 0 2367899999999999999999999988765432 2468999999998 9999999964 22 233332
Q ss_pred cceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcc
Q 002207 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 321 ~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~ 400 (953)
.+.+.. .+ ..+ ......| .. .+++++.+.+++++||++|++++||++
T Consensus 212 ~~~~~~----------------~~----~~g-~~~~~~~-~~----~~~~~~~~~~~~~~lg~~G~~~vd~~~------- 258 (331)
T 2pn1_A 212 FIKEKL----------------TM----RAG-ETDKSRS-VL----RDDVFELVEHVLDGSGLVGPLDFDLFD------- 258 (331)
T ss_dssp EEEEEE----------------EE----ETT-EEEEEEE-EC----CHHHHHHHHHHHTTTCCCEEEEEEEEE-------
T ss_pred EEEEEE----------------Ee----cCC-ceeEeEE-ec----cHHHHHHHHHHHHHhCCcceEEEEEEE-------
Confidence 322110 00 111 1222222 12 256788999999999999999999973
Q ss_pred ccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 401 FSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 401 ~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
.+|++||+|||+++|-. ++ ...++|+++.+++-++
T Consensus 259 -----------~~g~~~~iEiN~R~~g~----~~-~~~~~G~~~~~~~~~~ 293 (331)
T 2pn1_A 259 -----------VAGTLYLSEINPRFGGG----YP-HAYECGVNFPAQLYRN 293 (331)
T ss_dssp -----------ETTEEEEEEEESSCCTT----HH-HHHHTTCCHHHHHHHH
T ss_pred -----------cCCCEEEEEEeCCCCCc----hH-HHHHcCCCHHHHHHHH
Confidence 46789999999986521 23 3568899987766444
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=241.44 Aligned_cols=202 Identities=20% Similarity=0.210 Sum_probs=159.7
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCcc--EECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVP--FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIp--yvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
..++|++|+. ..+||+.+|++++.++.+ |+|+++.++++|+||..++++|++ |||+|+++.
T Consensus 67 ~~~~D~~~~i---~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~------------- 129 (305)
T 3df7_A 67 LEKSDAFLII---APEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL------------- 129 (305)
T ss_dssp HTTCSEEEEE---CCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-------------
T ss_pred HHhcCEEEEE---ccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-------------
Confidence 4589999999 668999999888877665 999999999999999999999999 999999863
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccE
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v 318 (953)
...+||+||||.++++|.||.++++ .+..+|||+||+| +|++|.+++ +.. .
T Consensus 130 -------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lvEe~I~G-~e~sv~v~~---g~~--~- 180 (305)
T 3df7_A 130 -------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIAQEFIEG-INLSVSLAV---GED--V- 180 (305)
T ss_dssp -------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEEEECCCS-EEEEEEEEE---SSS--E-
T ss_pred -------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEEEeccCC-cEEEEEEEe---CCe--E-
Confidence 0257899999999999999999998 3568999999997 999999996 111 1
Q ss_pred EecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh-CCCCeeEeeeeecCCC
Q 002207 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL-GLCDFARIDGWFLPSS 397 (953)
Q Consensus 319 ~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL-g~~G~arVDf~~~~~~ 397 (953)
.+..+.. .+.++ .+|. ....|+.++++..++++++|.+++++| |++|+++|||++
T Consensus 181 -~~~~~~~-------------~~~~~-~~~~-----g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~---- 236 (305)
T 3df7_A 181 -KCLSVNE-------------QIINN-FRYA-----GAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVY---- 236 (305)
T ss_dssp -EEEEEEE-------------EEEET-TEEE-----EEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEE----
T ss_pred -EEEEEee-------------EeccC-ceec-----cccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEE----
Confidence 1112111 01111 1232 235788999999999999999999999 999999999985
Q ss_pred CccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
+ |++||+|||++||++..++ .+++|+++.+++.++
T Consensus 237 -------------~--~~~~viEiNpR~~~~~~~~----~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 237 -------------S--DQPYVIEINARLTTPVVAF----SRAYGASVADLLAGG 271 (305)
T ss_dssp -------------S--SSEEEEEEESSCCGGGGGH----HHHHSCCHHHHHTTC
T ss_pred -------------C--CCEEEEEEcCCCCCCHHHH----HHHHCCCHHHHHHhc
Confidence 3 6799999999999875443 578899998887666
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=238.48 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=160.3
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
..|++.+-.- .. +-.+-..|+. |+| +|+++.++.+|+||..+|++ |+++|||||++..+...+ .+.
T Consensus 86 ~~d~i~~e~e-~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~------~~~ 151 (403)
T 3k5i_A 86 TCDVVTAEIE-HV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEH---LRKYGIPMAEHRELVENT------PAE 151 (403)
T ss_dssp TCSEEEESSS-CS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHH---HHTTTCCBCCEEEESSCC------HHH
T ss_pred hCCEEEECCC-CC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHH---HHHCCcCCCCEEEEcCCC------HHH
Confidence 4677655321 11 2234466777 999 89999999999999999999 899999999999887322 122
Q ss_pred HHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 714 WHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
+.++.+++ +||+||||+.++ +|.||.++++.+|+.. +++... +..+|||+||++
T Consensus 152 ~~~~~~~~-g~P~VvKp~~gg~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~lvEe~i~~ 206 (403)
T 3k5i_A 152 LAKVGEQL-GYPLMLKSKTMAYDGRGNFRVNSQDDIPE---ALEALK---------------------DRPLYAEKWAYF 206 (403)
T ss_dssp HHHHHHHH-CSSEEEEESSSCCTTTTEEEECSTTSHHH---HHHHTT---------------------TSCEEEEECCCE
T ss_pred HHHHHHHh-CCCEEEEeCCCCcCCCCEEEECCHHHHHH---HHHhcC---------------------CCcEEEecCCCC
Confidence 44556778 699999999998 9999999999999885 343320 467999999995
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
. +|++|.++++.+. +...|..+.....+++ ...+.|++. ++++
T Consensus 207 ~------------------------~E~sv~v~~~~~g-~~~~p~~~~~~~~g~~----------~~~~~Pa~~--l~~~ 249 (403)
T 3k5i_A 207 K------------------------MELAVIVVKTKDE-VLSYPTVETVQEDSIC----------KLVYAPARN--VSDA 249 (403)
T ss_dssp E------------------------EEEEEEEEECSSC-EEECCCEEEEEETTEE----------EEEEESCSS--CCHH
T ss_pred C------------------------eEEEEEEEEcCCC-EEEeCCeeeEEeCCEE----------EEEEeCCCC--CCHH
Confidence 3 3999999987544 4445554433222222 123567762 5899
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+.+++++++.+++++||+.|+++||||++. +|++||+|||++||.+
T Consensus 250 ~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 250 INQKAQELARKAVAAFDGKGVFGVEMFLLE-DDSIMLCEIASRIHNS 295 (403)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCcEEEEEeecCCCCC
Confidence 999999999999999999999999999995 6899999999999987
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=248.83 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=178.2
Q ss_pred ccCcCEEEEcCCCCCCCc--hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 161 AANVDIVFPTIHGRFGED--GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEd--g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
..++|+|+| ..|+ ..++.+++.+|+| |+++.++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 100 ~~~id~Vip-----~sE~~l~~~a~~~e~~Gi~--g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee----~~~ 168 (474)
T 3vmm_A 100 MFGADAITT-----NNELFIAPMAKACERLGLR--GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLED----FRA 168 (474)
T ss_dssp HTTCSEEEE-----SCGGGHHHHHHHHHHTTCC--CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHH----HHH
T ss_pred HcCCCEEEE-----CCcccHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 357999999 3466 5689999999999 99999999999999999999999999999998876442 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----------CCCCcEEEeccCCCCeE-------
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----------GIDDRVVVELFLEGGSE------- 301 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----------~~~~~vlVEefI~Gg~E------- 301 (953)
+.+ .++||+||||..+++|.|+.++++.+|+.+....+... .+++.+|||+||+| .|
T Consensus 169 ~~~-----~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G-~e~~~~q~~ 242 (474)
T 3vmm_A 169 ALE-----EIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQG-EYGDWYQTE 242 (474)
T ss_dssp HHH-----HSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCB-CHHHHCSSS
T ss_pred HHH-----HcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCC-ceeeeeecc
Confidence 333 36889999999999999999999998876665543221 34689999999998 66
Q ss_pred -----EEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHH
Q 002207 302 -----FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376 (953)
Q Consensus 302 -----~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~ 376 (953)
+++..+-. +++...+...+.. ... .+. ......|+.++++..++|++.|.+
T Consensus 243 ~~~~e~sv~~v~~----dg~~~~v~i~~~~---------------~~~--~~~---~~~~~~Pa~l~~~~~~~l~~~a~~ 298 (474)
T 3vmm_A 243 GYSDYISIEGIMA----DGEYFPIAIHDKT---------------PQI--GFT---ETSHITPSILDEEAKKKIVEAAKK 298 (474)
T ss_dssp SSCSEEEEEEEEE----TTEEEEEEEEEEC---------------CCB--TTB---CCEEEESCCCCHHHHHHHHHHHHH
T ss_pred cccceeEEEEEEE----CCeEEEEEEEeec---------------cCC--Ccc---ceEEEECCCCCHHHHHHHHHHHHH
Confidence 77764321 1222222222110 000 011 245678999999999999999999
Q ss_pred HHHHhCCCCee-EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 377 LFQRLGLCDFA-RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 377 ~~~aLg~~G~a-rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
++++||++|.+ ||||++ +++|++||+||||+++ .++.++.+..++|+++.+++ ++.+
T Consensus 299 ~~~alG~~g~~~~vef~~-----------------~~dg~~~~iEvNpR~~--G~~~~~~~~~~tG~dl~~~~---i~~a 356 (474)
T 3vmm_A 299 ANEGLGLQNCATHTEIKL-----------------MKNREPGLIESAARFA--GWNMIPNIKKVFGLDMAQLL---LDVL 356 (474)
T ss_dssp HHHHHTCCSEEEEEEEEE-----------------EGGGEEEEEEEESSCC--STTHHHHHHHHHCCCHHHHH---HHHH
T ss_pred HHHHcCCCCccEEEEEEE-----------------cCCCCEEEEEEeCCCC--CCchHHHHHHHHCcCHHHHH---HHHH
Confidence 99999999998 699986 5688999999998887 55677888889999876654 4555
Q ss_pred h
Q 002207 456 C 456 (953)
Q Consensus 456 ~ 456 (953)
+
T Consensus 357 ~ 357 (474)
T 3vmm_A 357 C 357 (474)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=244.87 Aligned_cols=245 Identities=14% Similarity=0.147 Sum_probs=184.1
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++. .|+. .+...|+.+|+|++|++..++.+++||..+|++ |+++|||||++..+++.+
T Consensus 66 ~~id~vv~g-----~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~---l~~~GIptp~~~~~~~~~----- 132 (431)
T 3mjf_A 66 HDIGLTIVG-----PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDF---LARHNIPSAEYQNFTDVE----- 132 (431)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHH---HHHTTCSBCCEEEESCHH-----
T ss_pred hCcCEEEEC-----CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHH---HHHcCCCCCCeEeeCCHH-----
Confidence 468988873 3443 477889999999999999999999999999999 999999999998887532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. +.+. .....+|||+|
T Consensus 133 ---ea~~~~~~~-g~PvVvKp~~~~gg~GV~iv~~~~el~~---a~~~~~~~---~~~g----------~~~~~vlvEe~ 192 (431)
T 3mjf_A 133 ---AALAYVRQK-GAPIVIKADGLAAGKGVIVAMTQEEAET---AVNDMLAG---NAFG----------DAGHRIVVEEF 192 (431)
T ss_dssp ---HHHHHHHHH-CSSEEEEESSSCTTCSEEEECSHHHHHH---HHHHHHTT---HHHH----------CCCCCEEEEEC
T ss_pred ---HHHHHHHHc-CCeEEEEECCCCCCCcEEEeCCHHHHHH---HHHHHHhh---cccc----------CCCCeEEEEEe
Confidence 234455678 6999999999999999999999998876 45544310 0000 01368999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+++....+. ..+ ....+++++.+++.|.+..+.|++. +
T Consensus 193 i~G~-------------------------E~sv~~~~dg~~~~~~~-~~~--~~~~~~~~~~g~~~gg~g~~~P~~~--l 242 (431)
T 3mjf_A 193 LDGE-------------------------EASFIVMVDGENVLPMA-TSQ--DHKRVGDGDTGPNTGGMGAYSPAPV--V 242 (431)
T ss_dssp CCSE-------------------------EEEEEEEEESSCEEECC-CBE--ECCEEETTTEEEECSCSEEEESCTT--S
T ss_pred eCCc-------------------------EEEEEEEEcCCEEEEEE-eeE--eceecccCCCCCCCCCceEEeeCCC--C
Confidence 9997 99999997655433332 221 2345778888888787788888873 6
Q ss_pred CHHHHHHHHHH----HHHHHHHcCC--cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQR----IELIANALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~~----a~~~~~aLg~--~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++.+. +.++++++|+ .|+.++||+++. +|++||+|+|++||.+....+.+ +. + .+|++.
T Consensus 243 ~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g~~~viEiN~R~G~~~~~~i~~-~~---g----~dl~~~ 313 (431)
T 3mjf_A 243 TDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DGQPKVIEFNCRFGDPETQPIML-RM---R----SDLVEL 313 (431)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TSCEEEEEECGGGSTTTHHHHHH-HB---C----SCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CCCeEEEEEecCCCCcHHHHHHH-HH---C----CCHHHH
Confidence 88998888876 6788888887 799999999985 68899999999999544332222 21 1 256666
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
+++.+.
T Consensus 314 ~~~~~~ 319 (431)
T 3mjf_A 314 CLAGTQ 319 (431)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666554
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=244.89 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=170.3
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++ .+|++.++++++.++. ++|+++.++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 69 ~~~d~V~~-----~~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~-------- 131 (412)
T 1vkz_A 69 PEEDIVIP-----GSEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRF---MKKYGIRTARFEVAETPE-------- 131 (412)
T ss_dssp CSSCEECC-----SSGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEESSHH--------
T ss_pred cCCCEEEE-----CCcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCEEEECCHH--------
Confidence 46799988 2688888899999998 889999999999999999999 999999999998876532
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++.++... ...+ ....+|||+||+|
T Consensus 132 e~~~~~~~~-g~PvvvKp~~~~gg~Gv~~v~~~~el~~---a~~~~~~~~------~~~g-------~~~~vlvEe~i~G 194 (412)
T 1vkz_A 132 ELREKIKKF-SPPYVIKADGLARGKGVLILDSKEETIE---KGSKLIIGE------LIKG-------VKGPVVIDEFLAG 194 (412)
T ss_dssp HHHHHHTTS-CSSEEEEESSCCSSCCEEEESSHHHHHH---HHHHHHHTS------SSTT-------CCSCEEEEECCCS
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhhc------cccC-------CCCeEEEEECCcC
Confidence 234455678 6999999999999999999999998886 455554310 0000 0248999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
+ |++|.++.+ |..+...+..+ .....++++.+++.+....+.|++ ++++
T Consensus 195 ~-------------------------E~sv~~~~d-g~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~P~~---l~~~ 243 (412)
T 1vkz_A 195 N-------------------------ELSAMAVVN-GRNFVILPFVR--DYKRLMDGDRGPNTGGMGSWGPVE---IPSD 243 (412)
T ss_dssp E-------------------------EEEEEEEEE-TTEEEECCCCE--ECCEEETTTEEEECSCSEEEECCC---CCHH
T ss_pred c-------------------------EEEEEEEEC-CCEEEEeeeeE--eeeeccCCCCCCCCCCceEEECCC---CCHH
Confidence 7 999999984 33322222212 123456777777777777788887 6899
Q ss_pred HHHHHHHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 873 ALDKCKQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+.+++++++++++++| ++.|+.++||+++. +| +||+|||++||.+..
T Consensus 244 ~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 244 TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD-PYILEYNVRLGDPET 295 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC-cEEEEEecCCCCCcc
Confidence 9999999999999999 78899999999985 57 999999999998754
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=244.38 Aligned_cols=245 Identities=17% Similarity=0.127 Sum_probs=185.9
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||||++..+++.+
T Consensus 82 ~~id~vv~g-----~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~---l~~~GIp~p~~~~~~~~~----- 148 (442)
T 3lp8_A 82 EKIELVVIG-----PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKEL---CMRYGIPTAKYGYFVDTN----- 148 (442)
T ss_dssp TTCCEEEEC-----SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHH---HHHHTCCBCCEEEESSHH-----
T ss_pred hCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHH---HHHCCCCCCCEEEECCHH-----
Confidence 468999972 46653 56788999999999999999999999999999 999999999998887532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. +.+.. ....+|||+|
T Consensus 149 ---ea~~~~~~~-g~PvVvKp~~~~gg~GV~iv~~~eel~~---a~~~~~~~---~~~g~----------~~~~vlvEe~ 208 (442)
T 3lp8_A 149 ---SAYKFIDKH-KLPLVVKADGLAQGKGTVICHTHEEAYN---AVDAMLVH---HKFGE----------AGCAIIIEEF 208 (442)
T ss_dssp ---HHHHHHHHS-CSSEEEEESSCCTTTSEEEESSHHHHHH---HHHHHHTS---CTTGG----------GGSSEEEEEC
T ss_pred ---HHHHHHHHc-CCcEEEeECCCCCCCeEEEeCCHHHHHH---HHHHHHhh---cccCC----------CCCeEEEEEe
Confidence 234456678 6999999999999999999999988875 55555421 00100 1367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |+++.++.+++....+ +. ......+++++.+++.+.+..+.|++. +
T Consensus 209 i~G~-------------------------E~sv~~~~dg~~~~~~-~~--~~~~~~~~~~~~g~~~gg~g~~~P~~~--l 258 (442)
T 3lp8_A 209 LEGK-------------------------EISFFTLVDGSNPVIL-GV--AQDYKTIGDNNKGPNTGGMGSYSKPNI--I 258 (442)
T ss_dssp CCSE-------------------------EEEEEEEEESSCEEEE-EE--EEECCEEEGGGEEEECSCSEEEECTTS--S
T ss_pred ecCc-------------------------EEEEEEEECCCeEEEe-EE--eEeeeecccCCCCCCCCCcEEEeeCCC--C
Confidence 9997 9999999765433222 22 223456788888888777778888863 6
Q ss_pred CHHHHHHHHHH----HHHHHHHcCC--cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQR----IELIANALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~~----a~~~~~aLg~--~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++++. +.++++++|+ .|+.++||+++. +| +||+|+|++||.+....+.+. . -.+|++.
T Consensus 259 ~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~~~~~---~-----~~dl~~~ 328 (442)
T 3lp8_A 259 TQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE-PKLLEYNVRFGDPETQSILPR---L-----NSDFLKL 328 (442)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTHHHHHGGG---B-----CSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-eEEEEEecCCCCCchhhhHHH---h-----CCCHHHH
Confidence 89999999887 8899999999 799999999995 56 999999999996544322221 1 1266666
Q ss_pred HHHHHhh
Q 002207 944 VLDLGSE 950 (953)
Q Consensus 944 li~~a~~ 950 (953)
+++.+..
T Consensus 329 ~~~~~~G 335 (442)
T 3lp8_A 329 LSLTAKG 335 (442)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 6666553
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=234.65 Aligned_cols=264 Identities=12% Similarity=0.065 Sum_probs=180.0
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEE--EEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV--RCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V--~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
++|||+|++ .|+++|+ .++++|++.||+| +.++.+.. . .. .
T Consensus 10 ~~m~i~il~----~~~~~s~----~l~~al~~~G~~v~~~~~d~~~~--------~----------~~--~--------- 52 (324)
T 1z2n_X 10 QTVSLFIWL----PESKQKT----LFISTKNHTQFELNNIIFDVTLS--------T----------EL--P--------- 52 (324)
T ss_dssp CEEEEEEEC----CHHHHHH----HBSSCCSEEEEEETTEEEEEEEE--------S----------SC--C---------
T ss_pred CcEEEEEEE----chhhhhh----hHHHHHHhcCcEEEEEEecCCCC--------c----------cc--c---------
Confidence 347999999 5778875 8899999999999 87654220 0 00 0
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHc-----CCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK-----YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~-----~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
...+|+||+.+++.. +.+++.|+. .|+|+ ++++.++++++||..++++|+++|||+|+++.+.+
T Consensus 53 -------~~~~d~v~~~~~~~~---~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~ 121 (324)
T 1z2n_X 53 -------DKEPNAIITKRTHPV---GKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINALLIKNNIPIPNSFSVKS 121 (324)
T ss_dssp -------SSCCSEEEECCSCSS---SHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESS
T ss_pred -------CCCceEEEEeccchH---HHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCC
Confidence 015899999887644 456777666 89996 47899999999999999999999999999998866
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCc---eeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCC-CeEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS---IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG-GSEFTA 304 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS---~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~G-g~E~tv 304 (953)
.+ ++.++++.. ..+||+||||..+++| .|+.++++.+++. .++..+|||+||+| ++|++|
T Consensus 122 ~~----~~~~~~~~~---~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~---------~~~~~~lvqe~i~~~g~~~~v 185 (324)
T 1z2n_X 122 KE----EVIQLLQSK---QLILPFIVKPENAQGTFNAHQMKIVLEQEGID---------DIHFPCLCQHYINHNNKIVKV 185 (324)
T ss_dssp HH----HHHHHHHTT---CSCSSEEEEESBCSSSSGGGEEEEECSGGGGT---------TCCSSEEEEECCCCTTCEEEE
T ss_pred HH----HHHHHHHHc---CCCCCEEEeeCCCCCCccceeeEEEeCHHHHh---------hcCCCEEEEEccCCCCcEEEE
Confidence 43 233333221 1458999999998777 9999999987643 24678999999964 489999
Q ss_pred EEEEeCCCCccccEEecceEEEEeccCccccc-cCCcccccc------------cCc---------cCCCce-EEEcCCC
Q 002207 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR-EKDAIFNYR------------RKY---------LPTQQV-AYHTPPR 361 (953)
Q Consensus 305 ~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~-~~~~~~dy~------------~Ky---------~~~~~~-~~~~Pa~ 361 (953)
.|++ +. .... .+... .+...-. ....+|++. +|| ...... ....|..
T Consensus 186 ~v~g----~~--~~~~--~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 255 (324)
T 1z2n_X 186 FCIG----NT--LKWQ--TRTSL--PNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNL 255 (324)
T ss_dssp EEET----TE--EEEE--EECCC--CCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTS
T ss_pred EEEC----CE--EEEE--EecCc--ccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccC
Confidence 9983 21 2111 11100 0000000 000144443 111 111000 0012334
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCcchHH
Q 002207 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTSFLF 434 (953)
Q Consensus 362 l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p 434 (953)
+++ ++++++|.+++++|||. +++|||++ + ++|++||+|||++|||+..+.++
T Consensus 256 ~~~---~~i~~~a~~~~~~lg~~-~~~vD~~~-----------------~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 256 TSE---AEMRDLAYKVRCALGVQ-LCGIDFIK-----------------ENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp CCH---HHHHHHHHHHHHHHTCS-EEEEEEEC-----------------GGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred CCH---HHHHHHHHHHHHHhCCc-EEeeEEEE-----------------EcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 442 57899999999999997 99999976 4 46899999999999999987665
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=231.84 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=153.1
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++...... ..+...|+.+|+| +|+++.++.+|+||..+|++ |+++|||+|++..+.+.+ +
T Consensus 61 ~~~d~v~~~~e~~~---~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~-------~ 126 (380)
T 3ax6_A 61 KGSDVTTYDLEHID---VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEF---LKKNGIPVPEYKLVKDLE-------S 126 (380)
T ss_dssp HTCSEEEESCSCSC---HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHH---HHHTTCCCCCEEECSSHH-------H
T ss_pred hcCCEEEecccCCC---HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeEEeCCHH-------H
Confidence 46899988653221 2345678999999 78999999999999999999 999999999998775432 1
Q ss_pred HHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.+++ +||+||||..++ +|.||.++++.+|+..+ + ...+|||+||+
T Consensus 127 ----~~~~~-~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~---~-------------------------~~~~lvEe~i~ 173 (380)
T 3ax6_A 127 ----DVREF-GFPVVQKARKGGYDGRGVFIIKNEKDLENA---I-------------------------KGETYLEEFVE 173 (380)
T ss_dssp ----HHHTT-CSSEEEEESCCC-----EEEECSGGGGGGC---C-------------------------CSSEEEEECCC
T ss_pred ----HHHhc-CCCEEEEecCCCCCCCCeEEECCHHHHHHH---h-------------------------cCCEEEEeccC
Confidence 34567 699999999999 99999999999987631 1 15699999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcC-CCCceeeCceEEEe--cCCccccccccccCCCceeEcCCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVK--ESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~--~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
|+ |++|.++.+ +|.... .+..+.. ...+++ ...+.|++
T Consensus 174 ~g~-------------------------e~sv~~~~~~~G~~~~-~~~~~~~~~~~~~~~----------~~~~~p~~-- 215 (380)
T 3ax6_A 174 IEK-------------------------ELAVMVARNEKGEIAC-YPVVEMYFDEDANIC----------DTVIAPAR-- 215 (380)
T ss_dssp EEE-------------------------EEEEEEEECSSCCEEE-EEEEEEC------------------CEEEESCS--
T ss_pred CCe-------------------------eEEEEEEECCCCCEEE-ECCeeeeecccCCee----------EEEECCCC--
Confidence 65 999999986 444432 3333221 111111 12467776
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+++++.+++++.+++++++||+.|++++||+++. +|++||+|||++||.+..
T Consensus 216 -l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~~~viEiN~R~~~~~~ 267 (380)
T 3ax6_A 216 -IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGEILVNEIAPRPHNSGH 267 (380)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEEESSCCGGGT
T ss_pred -CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEecCCCCCCce
Confidence 5889999999999999999999999999999995 689999999999998764
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=237.01 Aligned_cols=289 Identities=17% Similarity=0.122 Sum_probs=195.0
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
++..++.+|+..+ +....=|+. -+++.++|++.||+++.++.+.. +.
T Consensus 13 ~~~~~~~~vG~~l---~~kk~~~~~-~~~l~~al~~~G~~~~~iD~~~~------------------~~----------- 59 (346)
T 2q7d_A 13 QTFLKGKRVGYWL---SEKKIKKLN-FQAFAELCRKRGMEVVQLNLSRP------------------IE----------- 59 (346)
T ss_dssp GGGGTTCEEEEEC---CHHHHHHHT-HHHHHHHHHTTTCEEEECCTTSC------------------SG-----------
T ss_pred ccccCceEEEEEE---Ccccchhhh-HHHHHHHHHhCCcEEEEcccccc------------------hh-----------
Confidence 3344456787776 111112222 46799999999999986543211 00
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCC--------chHHHHHHHc----CCccEECCCHHHHHHhccHHHHHHHHHHC---
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGE--------DGGIQEVLEK----YNVPFVGTGSRACRQAFDKYDASLEMSKQ--- 216 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GE--------dg~iq~lle~----~gIpyvGs~~~a~~i~~DK~~~k~~l~~~--- 216 (953)
. ...+|+||+.+||..|| ++.+|.+++. .|+|.+ +++.++..|.||..|.++|+++
T Consensus 60 ------~--~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~ 130 (346)
T 2q7d_A 60 ------E--QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYELIRKIEAY 130 (346)
T ss_dssp ------G--GCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------h--cCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHHHHhhccc
Confidence 0 12689999999998887 5788877654 478765 7899999999999999999997
Q ss_pred ----CCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC-C-CceeEEEeCCHHHHHHHHHHhHhcCCCCcE
Q 002207 217 ----GFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA-G-SSIGVTVAYGVIDSLKKAKGIILEGIDDRV 290 (953)
Q Consensus 217 ----Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~-g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~v 290 (953)
|||||+++++.+... .++.+.+.. ..++||+||||..+ | +|.|+.++++.+++.. ++..+
T Consensus 131 ~~~~gIp~P~t~~~~~~~~--~~~~~~~~~---~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~---------~~~~~ 196 (346)
T 2q7d_A 131 MEDDRICSPPFMELTSLCG--DDTMRLLEK---NGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNA---------IQPPC 196 (346)
T ss_dssp HCBTTEECCCEEEECSCCC--TTHHHHHHH---TTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCE
T ss_pred ccCCCCCCCCEEEEeCCCH--HHHHHHHHh---cCCCCCEEEEecCCCcceeeeeEEecCHHHHHh---------cCCCE
Confidence 999999999876311 011111111 13678999999974 3 3889999999887542 35679
Q ss_pred EEeccCC-CCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccc-cCCccccccc-CccCCCceEEEcC-------C
Q 002207 291 VVELFLE-GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR-EKDAIFNYRR-KYLPTQQVAYHTP-------P 360 (953)
Q Consensus 291 lVEefI~-Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~-~~~~~~dy~~-Ky~~~~~~~~~~P-------a 360 (953)
+|||||+ +|++++|.|++ +. .++ .. .....+ ..+. ...++|+|.+ ||..++.+.+.+| +
T Consensus 197 lvQefI~~~G~dirv~VvG----~~--v~~--~~--r~sl~~-~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~ 265 (346)
T 2q7d_A 197 VVQNFINHNAVLYKVFVVG----ES--YTV--VQ--RPSLKN-FSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVF 265 (346)
T ss_dssp EEEECCCCTTEEEEEEEET----TE--EEE--EE--EECCCC-CC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCC
T ss_pred EEEEeeCCCCeEEEEEEEC----CE--EEE--EE--EecCCC-cCcCccccccccccceeeccCCccccccccccccccc
Confidence 9999996 34999999994 22 211 11 100000 0011 1356899998 7664444444455 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHH
Q 002207 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASK 439 (953)
Q Consensus 361 ~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~ 439 (953)
.+++ .++++++|.+++++|||+.+ +||+++ +. +|++||+|||+.|||+..+
T Consensus 266 ~~~~--~~el~~lA~~a~~alGl~~~-gvDii~-----------------~~~~g~~~VlEVN~~PG~~g~~-------- 317 (346)
T 2q7d_A 266 ERPS--DEVIRELSRALRQALGVSLF-GIDIII-----------------NNQTGQHAVIDINAFPGYEGVS-------- 317 (346)
T ss_dssp CCCC--HHHHHHHHHHHHHHHCCCEE-EEEEEE-----------------CTTTCCEEEEEEEESCCCTTCT--------
T ss_pred cCCC--hHHHHHHHHHHHHHhCCceE-eeEEEe-----------------ecCCCCEEEEEEeCCccccccc--------
Confidence 3443 46789999999999999955 799876 43 5789999999999999875
Q ss_pred hCCCHHHHHHHHHHHHhhh
Q 002207 440 VGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 440 ~G~s~~~ll~~li~~a~~r 458 (953)
++.+++..+|..++.+
T Consensus 318 ---~~~~~i~~~l~~~~~~ 333 (346)
T 2q7d_A 318 ---EFFTDLLNHIATVLQG 333 (346)
T ss_dssp ---THHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhhc
Confidence 3456666666666654
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=240.69 Aligned_cols=241 Identities=19% Similarity=0.200 Sum_probs=167.7
Q ss_pred cCCcEEEEecCCCCCCcc--HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDG--TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg--~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
..+|.|++. .|.. ....+.|.+|+| |+++.++.+|+||..||++ |+++|||||++..+++.+...
T Consensus 74 ~~id~V~~~-----~e~~~~~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~~~--- 140 (425)
T 3vot_A 74 FPFDGVMTL-----FEPALPFTAKAAEALNLP--GLPFTTMENCRNKNKTRSI---LQQNGLNTPVFHEFHTLADLE--- 140 (425)
T ss_dssp SCCSEEECC-----CGGGHHHHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEESSGGGGT---
T ss_pred cCCCEEEEC-----CchhHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHH---HHHCCCCCCceeccCcHHHHH---
Confidence 356777653 2333 345677999999 8999999999999999999 999999999999987643211
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
..++ +||+||||..+++|.||.+|++.+||.++ ++.+....... +.. .......+|||+||
T Consensus 141 -------~~~~-g~P~vvKp~~g~gs~Gv~~v~~~~el~~a---~~~~~~~~~~~-~~~-------~~~~~~~~lvEe~i 201 (425)
T 3vot_A 141 -------NRKL-SYPLVVKPVNGFSSQGVVRVDDRKELEEA---VRKVEAVNQRD-LNR-------FVHGKTGIVAEQFI 201 (425)
T ss_dssp -------TCCC-CSSEEEEESCC-----CEEECSHHHHHHH---HHHHHHHTTSS-HHH-------HHTTCCCEEEEECC
T ss_pred -------Hhhc-CCcEEEEECCCCCCCCceEechHHHHHHH---HHHHHhhhhhh-hhh-------hccCCCcEEEEEEe
Confidence 2467 69999999999999999999999999864 44443221000 000 00125789999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+|+ |++|.++..+|....+......... ..+. .....+.|++ ++
T Consensus 202 ~G~-------------------------e~sv~~~~~~g~~~~~~~~~~~~~~-------~~~~-~~~~~~~Pa~---l~ 245 (425)
T 3vot_A 202 DGP-------------------------EFAIETLSIQGNVHVLSIGYKGNSK-------GPFF-EEGVYIAPAQ---LK 245 (425)
T ss_dssp CSC-------------------------EEEEEEEEETTEEEEEEEEEEECCC-------CSBC-CCCEEEESCC---CC
T ss_pred cCc-------------------------EEEEEEEEeCCcEEEEeEEEEeccC-------CCcc-ccceEeeccc---CC
Confidence 997 9999988776654433221111111 1111 2235577887 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCch-HHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 871 TEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV-LIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~-G~ariDf~v~~~~g~~~viEINt~PGlt~~S~-l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
++..+++++.+.+++++||+. |++++|||++. +|++||||||++||.+..+. +.+.+. | . ++++.+|+.+
T Consensus 246 ~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG~~~~iEiN~R~gG~~~~~~l~~~~~---G-~---d~~~~~i~~a 317 (425)
T 3vot_A 246 EETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DGTPYVIEVGARIGGSGVSHYIVKEST---G-I---NFMQLVLQNA 317 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TCCEEEEEEESSCGGGGHHHHHHHHHH---C-C---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CCcEEEEEEecCCCCCCchHHHHHHHH---C-C---CHHHHHHHHH
Confidence 999999999999999999995 99999999985 79999999999998876542 334333 2 1 4555566665
Q ss_pred h
Q 002207 949 S 949 (953)
Q Consensus 949 ~ 949 (953)
+
T Consensus 318 l 318 (425)
T 3vot_A 318 L 318 (425)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=244.77 Aligned_cols=233 Identities=14% Similarity=0.200 Sum_probs=175.0
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcC--CCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEE-
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEG--VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR- 700 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~g--IPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v- 700 (953)
+.+++.++ ..+|+|++. ||..+|+..++++|+.+| ++++|++..++.+|+||..++++ |+++|||+|++..+
T Consensus 120 ~~l~~~a~~~~id~Vi~g-~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~---l~~~GIp~p~~~~~~ 195 (554)
T 1w96_A 120 DLIVDIAERADVDAVWAG-WGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIV---AQSAKVPCIPWSGTG 195 (554)
T ss_dssp HHHHHHHHHTTCSEEECC-SSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHH---HHHTTCCBCCBTTTT
T ss_pred HHHHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHH---HHHCCCCcCCccccc
Confidence 34444433 468999987 799999999999999999 99999999999999999999999 89999999998643
Q ss_pred ----eCcc-----------c---cCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhC
Q 002207 701 ----RKED-----------L---LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRI 762 (953)
Q Consensus 701 ----~~~~-----------~---~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~ 762 (953)
.... + ...+ .+.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.+....
T Consensus 196 ~~~~~~~~~~~l~~ip~~~~~~~~~~~-~~e~~~~~~~~-g~PvVvKp~~g~gg~Gv~~v~~~~el~~---a~~~~~~~~ 270 (554)
T 1w96_A 196 VDTVHVDEKTGLVSVDDDIYQKGCCTS-PEDGLQKAKRI-GFPVMIKASEGGGGKGIRQVEREEDFIA---LYHQAANEI 270 (554)
T ss_dssp CCCCEECTTTCCEECCHHHHGGGSCSS-HHHHHHHHHHH-CSSEEEEETTCCTTTTEEEECSHHHHHH---HHHHHHHHS
T ss_pred cccccccccccccccccccccccCCCC-HHHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHH---HHHHHHhhc
Confidence 0000 0 0001 12233445678 6999999999999999999999999886 555554431
Q ss_pred CCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEe
Q 002207 763 PPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVK 841 (953)
Q Consensus 763 ~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~ 841 (953)
....++||+||+|. +|++|.++++. |..+.+.+...
T Consensus 271 -----------------~~~~vlvEe~i~g~------------------------~e~sv~vl~d~~G~vv~l~~~~~-- 307 (554)
T 1w96_A 271 -----------------PGSPIFIMKLAGRA------------------------RHLEVQLLADQYGTNISLFGRDC-- 307 (554)
T ss_dssp -----------------TTCCEEEEECCCSC------------------------EEEEEEEEECTTSCEEEEEEEEE--
T ss_pred -----------------cCCCEEEEEecCCC------------------------cEEEEEEEEcCCCCEEEEeeeee--
Confidence 14689999999974 49999999875 44333322111
Q ss_pred cCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 842 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 842 ~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.+.++..|+. ...|++. +++++.+++++.+.+++++||+.|++++||+++.++|++||+|||+++|-+
T Consensus 308 ---~~~~~~~k~~-----~~~P~~~--l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 308 ---SVQRRHQKII-----EEAPVTI--AKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp ---EEEETTEEEE-----EEESCCS--SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred ---eeEeecccee-----eeCCCcC--CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 1223333433 2356542 578999999999999999999999999999997336899999999999876
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=229.27 Aligned_cols=212 Identities=23% Similarity=0.231 Sum_probs=158.0
Q ss_pred cCCcEEEEecCCCCCCccHH--HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHH-HHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGTL--QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~i--q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l-~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++.. |+..+ ...|+.+|+ ++|+++.++.+|+||..+|++ | +++|||+|++..+.+.+
T Consensus 73 ~~~d~v~~~~-----e~~~~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~---l~~~~gip~p~~~~~~~~~----- 138 (391)
T 1kjq_A 73 EKPHYIVPEI-----EAIATDMLIQLEEEGL-NVVPCARATKLTMNREGIRRL---AAEELQLPTSTYRFADSES----- 138 (391)
T ss_dssp HCCSEEEECS-----SCSCHHHHHHHHHTTC-EESSCHHHHHHHHSHHHHHHH---HHTTSCCCBCCEEEESSHH-----
T ss_pred cCCCEEEECC-----CcCCHHHHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHH---HHHhCCCCCCCeeeeCCHH-----
Confidence 4689999865 33323 345889999 679999999999999999998 8 79999999999876532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.+.... + .....+|||+|
T Consensus 139 ---~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEe~ 196 (391)
T 1kjq_A 139 ---LFREAVADI-GYPCIVKPVMSSSGKGQTFIRSAEQLAQ---AWKYAQQGG------R---------AGAGRVIVEGV 196 (391)
T ss_dssp ---HHHHHHHHH-CSSEEEEESCC---CCCEEECSGGGHHH---HHHHHHHHS------G---------GGCCCEEEEEC
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCCeEEECCHHHHHH---HHHHHHhhc------c---------cCCCCEEEEEe
Confidence 234455678 6999999999999999999999999886 454443320 0 01468999999
Q ss_pred cc-CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+ |. |+++.++.+.+... +.+...... ..+++..+ +.|++
T Consensus 197 i~~g~-------------------------E~sv~~~~~~~g~~-~~~~~~~~~--~~~~~~~~--------~~p~~--- 237 (391)
T 1kjq_A 197 VKFDF-------------------------EITLLTVSAVDGVH-FCAPVGHRQ--EDGDYRES--------WQPQQ--- 237 (391)
T ss_dssp CCCSE-------------------------EEEEEEEEETTEEE-ECCCEEEEE--ETTEEEEE--------EECCC---
T ss_pred cCCCe-------------------------EEEEEEEEeCCCeE-EccCcceEE--ECCEEEEE--------EeCCC---
Confidence 99 65 99999988654432 333332211 12333322 34665
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++++..+++++.+.+++++||+.|++++||+++. + ++||+|||++||.+..
T Consensus 238 l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-~-~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 238 MSPLALERAQEIARKVVLALGGYGLFGVELFVCG-D-EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEET-T-EEEEEEEESSCCGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-C-cEEEEEEECCCCCCcc
Confidence 5889999999999999999999999999999984 3 8999999999996643
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=236.41 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=181.7
Q ss_pred HHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeC
Q 002207 626 EWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRK 702 (953)
Q Consensus 626 ~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~ 702 (953)
.+++.++ ..+|+|+|. +|...|+..+...|+.+|+|++|+++.++.++.||..+|++ |+++|||+|++. .+.+
T Consensus 69 ~l~~~~~~~~~d~i~p~-~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~---l~~~Gip~p~~~~~~~~~ 144 (446)
T 3ouz_A 69 AIIAAAEIAEADAIFPG-YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQV---MQRAGVPVIPGSDGALAG 144 (446)
T ss_dssp HHHHHHHHHTCSEEECC-SSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHH---HHHTTCCBCSBCSSSCCS
T ss_pred HHHHHHHHhCcCEEEEC-CcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHH---HHHcCCCcCCCcccCCCC
Confidence 3344333 468999887 58888999999999999999999999999999999999999 999999999986 4433
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHH-HhhCCCCCcccccccccCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC-LLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a-~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
. +.+.++.+++ +||+||||..+++|.||.+|++.+|+.++.+.+... .... .+
T Consensus 145 ~--------~e~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~-----------------~~ 198 (446)
T 3ouz_A 145 A--------EAAKKLAKEI-GYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAF-----------------GD 198 (446)
T ss_dssp H--------HHHHHHHHHH-CSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHH-----------------SC
T ss_pred H--------HHHHHHHHHh-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhc-----------------CC
Confidence 2 2244556778 699999999999999999999999998743333221 1110 14
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
..++||+||+|. +|+++.++++........+..... +.....| ....
T Consensus 199 ~~~lvEe~i~g~------------------------~e~~v~v~~d~~g~~~~~~~~~~~----~~~~~~~-----~~~~ 245 (446)
T 3ouz_A 199 GTMYMEKYIQNP------------------------RHIEVQVIGDSFGNVIHVGERDCS----MQRRHQK-----LIEE 245 (446)
T ss_dssp CCEEEEECCSSC------------------------EEEEEEEEECTTSCEEEEEEEEEE----EEETTEE-----EEEE
T ss_pred CCEEEEeCCCCC------------------------cEEEEEEEEcCCCCEEEEeeceee----eeecCce-----EEEE
Confidence 679999999994 499999998753322222111110 1111111 1235
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHH
Q 002207 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFF 941 (953)
Q Consensus 862 ~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~ 941 (953)
.|++ .+++++.+++.+.+.+++++||+.|++++||+++. +|++||+|||++|+-+ ..+..++. | .+++
T Consensus 246 ~p~~--~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~~iEiNpR~~g~--~~~~~~~~---G----~dl~ 313 (446)
T 3ouz_A 246 SPAI--LLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNTRLQVE--HCVSEMVS---G----IDII 313 (446)
T ss_dssp ESCT--TSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCTT--HHHHHHHH---C----CCHH
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCCEEEEEeECCCCCc--ceeeeeee---C----CCHH
Confidence 5664 26899999999999999999999999999999985 5899999999999865 23344333 2 1555
Q ss_pred HHHHHHHh
Q 002207 942 RKVLDLGS 949 (953)
Q Consensus 942 ~~li~~a~ 949 (953)
+.+++.++
T Consensus 314 ~~~~~~~~ 321 (446)
T 3ouz_A 314 EQMIKVAE 321 (446)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 66666554
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-23 Score=232.27 Aligned_cols=209 Identities=22% Similarity=0.172 Sum_probs=159.1
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++..+... .+.++ .|+.+| ++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 58 ~~~d~v~~~~e~~~--~~~~~-~l~~~g--~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~-------- 121 (369)
T 3aw8_A 58 EGLALVTYEFENVP--VEAAR-RLEGRL--PLYPPAKALEVAQDRLREKTF---FQGLGVPTPPFHPVDGPE-------- 121 (369)
T ss_dssp TTCSEEEECCTTCC--HHHHH-HHHHHS--CBSSCHHHHHHHTCHHHHHHH---HHHHTCCCCCEEEESSHH--------
T ss_pred hCCCEEEECCCCcC--HHHHH-HHHHcC--CcCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCceeeCCHH--------
Confidence 57899999886653 33444 779999 689999999999999999999 999999999999886532
Q ss_pred HHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||..++ +|.||.++++.+|+.+ +++.. ....++||+||+
T Consensus 122 ~~~~~~~~~-g~P~vvKp~~~~~~g~Gv~~v~~~~el~~---~~~~~---------------------~~~~~lvEe~i~ 176 (369)
T 3aw8_A 122 DLEEGLKRV-GLPALLKTRRGGYDGKGQALVRTEEEALE---ALKAL---------------------GGRGLILEGFVP 176 (369)
T ss_dssp HHHHHHTTT-CSSEEEEECCC------EEEECSHHHHHH---HHTTT---------------------CSSSEEEEECCC
T ss_pred HHHHHHHHc-CCCEEEEEcCCCCCcceEEEECCHHHHHH---HHHhc---------------------CCCcEEEEEcCC
Confidence 234455678 699999999999 9999999999888774 33221 046799999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+ |++|.++.+. |... ..+..+......+++ ..+.|++. +
T Consensus 177 ~g~-------------------------e~sv~~~~d~~G~~~-~~~~~~~~~~~~~~~----------~~~~p~~~--l 218 (369)
T 3aw8_A 177 FDR-------------------------EVSLLAVRGRTGEVA-FYPLVENRHWGGILR----------LSLAPAPG--A 218 (369)
T ss_dssp CSE-------------------------EEEEEEEECTTSCEE-ECCCEEEEEETTEEE----------EEEESCTT--C
T ss_pred CCE-------------------------EEEEEEEECCCCCEE-EECCeeeeeeCCEEE----------EEECCCCC--C
Confidence 76 9999999864 4443 344433221222222 24667652 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
+++..+++++.+.+++++||+.|++++||+++. |++||+|||++||.+...
T Consensus 219 ~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~~~~viEiN~R~~~~~~~ 269 (369)
T 3aw8_A 219 SEALQKKAEAYALRAMEALDYVGVLALEFFQVG--EELLFNEMAPRVHNSGHW 269 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--TEEEEEEEESSCCGGGTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--CcEEEEEEeCCcCCccce
Confidence 789999999999999999999999999999983 789999999999998765
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=234.04 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=167.2
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++. .|+.. +...|+.+|+|++|++..++.+++||..+|++ |+++|||+|++..+.+.+
T Consensus 60 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~----- 126 (417)
T 2ip4_A 60 EGIDLTLVG-----PEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGL---MERYGIPTARYRVFREPL----- 126 (417)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHH---HHHTCCCBCCEEEESSHH-----
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHH---HHHcCCCCCCeeeeCCHH-----
Confidence 568999985 46553 55678899999999999999999999999999 999999999998876532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. ..+..+|||+|
T Consensus 127 ---~~~~~~~~~-~~P~vvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~-----------------~~~~~~lvEe~ 182 (417)
T 2ip4_A 127 ---EALAYLEEV-GVPVVVKDSGLAAGKGVTVAFDLHQAKQ---AVANILNR-----------------AEGGEVVVEEY 182 (417)
T ss_dssp ---HHHHHHHHH-CSSEEEECTTSCSSTTCEEESCHHHHHH---HHHHHTTS-----------------SSCCCEEEEEC
T ss_pred ---HHHHHHHHc-CCCEEEEECCCCCCCCEEEeCCHHHHHH---HHHHHHhh-----------------ccCCeEEEEEC
Confidence 233445677 6999999999999999999999998875 45544311 01368999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+. ....++++.+++.+....+.|++ +
T Consensus 183 i~g~-------------------------E~sv~~~~~-G~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~---l 231 (417)
T 2ip4_A 183 LEGE-------------------------EATVLALTD-GETILPLLPSQD--HKRLLDGDQGPMTGGMGAVAPYP---M 231 (417)
T ss_dssp CCSC-------------------------EEEEEEEES-SSCEEECCCBEE--CCEEETTTEEEECSCSEEEESCC---C
T ss_pred ccCc-------------------------EEEEEEEEe-CCEEEEcchhee--chhhccCCCCCcCCCCeeeeCCC---C
Confidence 9997 999999974 443323332221 22355666666666666778876 5
Q ss_pred CHHHHHHH-HHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKC-KQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i-~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++++.+++ ++.+++++++| ++.|++++||+++. +| +||+|||++||.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~ 285 (417)
T 2ip4_A 232 DEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG-PKVLEFNARFGDP 285 (417)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC-EEEEEEESSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC-eEEEEEecCCCCc
Confidence 88888888 66787777775 67899999999985 67 9999999999954
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=234.93 Aligned_cols=221 Identities=18% Similarity=0.246 Sum_probs=167.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~ 710 (953)
..+|+|++. +|...|++.++.+|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++. .+.+.
T Consensus 72 ~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~------- 140 (451)
T 1ulz_A 72 VGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEV---MKKAGVPVVPGSDGVLKSL------- 140 (451)
T ss_dssp TTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHH---HHHTTCCBCCBCSSSCCCH-------
T ss_pred cCCCEEEEC-CCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccccCCH-------
Confidence 568998876 67778999999999999999999999999999999999999 999999999986 44432
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
+.+.++.+++ +||+||||..+++|.||.+|++.+|+..+ ++.++... .... .+..++||+||
T Consensus 141 -~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~i 202 (451)
T 1ulz_A 141 -EEAKALAREI-GYPVLLKATAGGGGRGIRICRNEEELVKN---YEQASREA-----EKAF--------GRGDLLLEKFI 202 (451)
T ss_dssp -HHHHHHHHHH-CSSEEEEECSSSSCCSCEEESSHHHHHHH---HHHHHHHH-----HHTT--------SCCCEEEEECC
T ss_pred -HHHHHHHHHc-CCCEEEEECCCCCCccEEEeCCHHHHHHH---HHHHHHHH-----HHhc--------CCCeEEEEEcc
Confidence 1234455677 69999999999999999999999998864 44433210 0000 14689999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
+|. +|++|.++++. |....+. . +. +++..++. ......|++ .+
T Consensus 203 ~g~------------------------~e~~v~v~~~~~G~~~~~~-~-~~------~~~~~~~~--~~~~~~P~~--~l 246 (451)
T 1ulz_A 203 ENP------------------------KHIEYQVLGDKHGNVIHLG-E-RD------CSIQRRNQ--KLVEIAPSL--IL 246 (451)
T ss_dssp CSC------------------------EEEEEEEEECTTSCEEEEE-E-EE------EEEEETTE--EEEEEESCS--SC
T ss_pred cCC------------------------eEEEEEEEEcCCCCEEEEe-e-ee------cccccccc--cceeECCcc--cC
Confidence 984 49999999874 4433221 1 10 11111111 112345664 26
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++..+++++.+.+++++||+.|++++||+++. +|++||+|||++|+-+
T Consensus 247 ~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 247 TPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMNTRIQVE 295 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEECSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCCEEEEEeeCCCCcc
Confidence 889999999999999999999999999999985 6899999999999754
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=235.40 Aligned_cols=223 Identities=16% Similarity=0.218 Sum_probs=168.3
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
+..+|+|++. +|...|++.++.+|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++. .+.+.
T Consensus 71 ~~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~------ 140 (451)
T 2vpq_A 71 STGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE---MIKANVPVVPGSDGLMKDV------ 140 (451)
T ss_dssp HTTCSEEECC-SSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHH---HHHTTCCBCSBCSSCBSCH------
T ss_pred HcCCCEEEEC-CCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHH---HHHcCCCcCCCcccCcCCH------
Confidence 3568999887 68888999999999999999999999999999999999999 999999999976 44432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.+++ +||+||||..+++|.||.+|++.+|+.++ ++.++... .... .+..++||+|
T Consensus 141 --~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~ 201 (451)
T 2vpq_A 141 --SEAKKIAKKI-GYPVIIKATAGGGGKGIRVARDEKELETG---FRMTEQEA-----QTAF--------GNGGLYMEKF 201 (451)
T ss_dssp --HHHHHHHHHH-CSSEEEEETTCCTTCSEEEESSHHHHHHH---HHHHHHHH-----HHHH--------SCCCEEEEEC
T ss_pred --HHHHHHHHhc-CCcEEEEECCCCCCCCEEEeCCHHHHHHH---HHHHHHHH-----Hhhc--------CCCcEEEEEe
Confidence 1234455678 69999999999999999999999998864 43332210 0000 0467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|++|.++++. |....+ +.... .+...++ ......|++ .
T Consensus 202 i~g~------------------------~e~~v~v~~~~~G~~~~~-~~~~~-------~~~~~~~--~~~~~~P~~--~ 245 (451)
T 2vpq_A 202 IENF------------------------RHIEIQIVGDSYGNVIHL-GERDC-------TIQRRMQ--KLVEEAPSP--I 245 (451)
T ss_dssp CCSE------------------------EEEEEEEEECTTSCEEEE-EEEEE-------EEEETTE--EEEEEESCT--T
T ss_pred cCCC------------------------eEEEEEEEEcCCCCEEEE-ecccc-------chhcccc--ceEEEcCCC--C
Confidence 9994 49999999875 443222 21100 0111111 112345765 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||++++++|++||+|||++|+-+
T Consensus 246 l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 246 LDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 688999999999999999999999999999998336899999999999754
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=234.71 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=168.7
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (424)
T 2yw2_A 61 EGVDFTIVG-----PEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTF---MKKYGIPTARYEVFTDFE----- 127 (424)
T ss_dssp HTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHH---HHHTTCCBCCEEEESCHH-----
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 468999984 46653 55678899999999999999999999999999 999999999998876532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. +.+.. ....+|||+|
T Consensus 128 ---~~~~~~~~~-~~PvvvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~---~~~g~----------~~~~~lvEe~ 187 (424)
T 2yw2_A 128 ---KAKEYVEKV-GAPIVVKADGLAAGKGAVVCETVEKAIE---TLDRFLNK---KIFGK----------SSERVVIEEF 187 (424)
T ss_dssp ---HHHHHHHHH-CSSEEEEESSCCTTCSEEEESSHHHHHH---HHHHHHTS---CTTGG----------GGSSEEEEEC
T ss_pred ---HHHHHHHHc-CCcEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhh---hhccC----------CCCeEEEEEC
Confidence 233455677 6999999999999999999999998875 45554431 00000 0357999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+ ....+++++.+++.+.+..+.|++. +
T Consensus 188 i~g~-------------------------E~sv~~~~~-G~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (424)
T 2yw2_A 188 LEGE-------------------------EASYIVMIN-GDRYVPLPTSQ--DHKRLLDEDKGPNTGGMGAYSPTPV--I 237 (424)
T ss_dssp CCSE-------------------------EEEEEEEEE-TTEEEECCCBE--ECCEEETTTEEEECSCSEEEESCTT--S
T ss_pred CCCc-------------------------EEEEEEEEc-CCEEEeeccee--eccccccCCCCCCCCCCeeECCCcc--C
Confidence 9997 999998874 33332222221 1234666666776666677788762 5
Q ss_pred CHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKCK-QRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i~-~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.++++ +.+.+++++| ++.|++++||+++. +| +||+|||++||.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 238 NEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG-PKVLEFNVRLGDPE 292 (424)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-cEEEEEecCCCCcH
Confidence 788888884 6788888776 67899999999995 57 99999999999553
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=231.30 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=148.4
Q ss_pred hhcCCcEEEEecCCCCCCccHHHHHHHHcCCC--EeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCC
Q 002207 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVP--YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT 708 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIP--y~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~ 708 (953)
....+|++|++ ..||||.+|++++.++.+ |+|+++.++++|+||..++++ |++ |||+|++..
T Consensus 66 ~~~~~D~~~~i---~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~---l~~-Gip~p~~~~--------- 129 (305)
T 3df7_A 66 YLEKSDAFLII---APEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKK---LRG-EVQVPQTSL--------- 129 (305)
T ss_dssp HHTTCSEEEEE---CCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHH---HTT-TSCCCCEES---------
T ss_pred HHHhcCEEEEE---ccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHH---HHh-CCCCCCEec---------
Confidence 34578999999 778999999999998777 999999999999999999999 899 999999863
Q ss_pred chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 709 PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 709 ~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
..+ +||+||||.++++|.||.++++ . +..+|||+
T Consensus 130 ----------~~~-~~P~vvKP~~g~gs~Gv~~v~~----------------~-------------------~~~~lvEe 163 (305)
T 3df7_A 130 ----------RPL-DCKFIIKPRTACAGEGIGFSDE----------------V-------------------PDGHIAQE 163 (305)
T ss_dssp ----------SCC-SSSEEEEESSCC----CBCCSS----------------C-------------------CTTEEEEE
T ss_pred ----------ccC-CCCEEEEeCCCCCCCCEEEEec----------------C-------------------CCCEEEEe
Confidence 134 6999999999999999999986 1 46899999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||+|+ |++|.+++++ ... +...... +.++ .+|.+ ..+|+.
T Consensus 164 ~I~G~-------------------------e~sv~v~~g~-~~~---~~~~~~~---~~~~-~~~~g----~~~p~~--- 203 (305)
T 3df7_A 164 FIEGI-------------------------NLSVSLAVGE-DVK---CLSVNEQ---IINN-FRYAG----AVVPAR--- 203 (305)
T ss_dssp CCCSE-------------------------EEEEEEEESS-SEE---EEEEEEE---EEET-TEEEE----EEESCC---
T ss_pred ccCCc-------------------------EEEEEEEeCC-eEE---EEEEeeE---eccC-ceecc----ccccCC---
Confidence 99997 9999999742 221 1111111 1111 23332 256776
Q ss_pred CCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 869 MSTEALDKCKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aL-g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
++++..+++++.+.+++++| |+.|+++|||+++ |++||+|||++||.+..+
T Consensus 204 l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~~~~viEiNpR~~~~~~~ 255 (305)
T 3df7_A 204 ISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS---DQPYVIEINARLTTPVVA 255 (305)
T ss_dssp CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---SSEEEEEEESSCCGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---CCEEEEEEcCCCCCCHHH
Confidence 57899999999999999999 9999999999994 679999999999998654
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=226.79 Aligned_cols=209 Identities=18% Similarity=0.181 Sum_probs=146.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
.+|+++...||.+ +++.++++|+.+|+|++++ +.++.+|+||..++++ |+++|||+|++..+.+.+ .
T Consensus 48 ~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gi~~p~~~~~~~~~--------~ 114 (280)
T 1uc8_A 48 GVTVALERCVSQS-RGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVA---LAKAGLPQPKTALATDRE--------E 114 (280)
T ss_dssp TCCEEEECCSSHH-HHHHHHHHHHHTTCCEESC-HHHHHHHHBHHHHHHH---HHHTTCCCCCEEEESSHH--------H
T ss_pred CCCEEEECCccch-hhHHHHHHHHHCCCceeCC-HHHHHHhCCHHHHHHH---HHHcCcCCCCeEeeCCHH--------H
Confidence 3686666666644 7789999999999999975 8999999999999999 899999999999886532 2
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHH--HhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC--LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a--~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.++.+++ +||+||||..+++|.||.++++.+++..+ ++.. +.. .....+|||+||+
T Consensus 115 ~~~~~~~~-~~p~vvKp~~g~~~~gv~~v~~~~el~~~---~~~~~~~~~-----------------~~~~~~lvqe~i~ 173 (280)
T 1uc8_A 115 ALRLMEAF-GYPVVLKPVIGSWGRLLAXXXXXXXXXXX---XXXKEVLGG-----------------FQHQLFYIQEYVE 173 (280)
T ss_dssp HHHHHHHH-CSSEEEECSBCCBCSHHHHHHHHHC---------------C-----------------TTTTCEEEEECCC
T ss_pred HHHHHHHh-CCCEEEEECCCCCcccceecccccccchh---hhhHhhhcc-----------------cCCCcEEEEeccC
Confidence 34455677 69999999999999999999998888753 3322 111 0146899999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
|.+ .|+++.++++. . .+.+... . .+|..++..+.. ..|.+ +++
T Consensus 174 ~~~-----------------------~e~~v~v~~~~--~---~~~~~~~-~---~~~~~~~~~g~~--~~p~~---l~~ 216 (280)
T 1uc8_A 174 KPG-----------------------RDIRVFVVGER--A---IAAIYRR-S---AHWITNTARGGQ--AENCP---LTE 216 (280)
T ss_dssp CSS-----------------------CCEEEEEETTE--E---EEEEEC--------------------CEECC---CCH
T ss_pred CCC-----------------------ceEEEEEECCE--E---EEEEEEe-c---CCccccccCCcc--ccCCC---CCH
Confidence 731 38888888542 2 1222111 1 123333433332 24554 343
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.+.+++++||+ |++++||+++. +| +||+|||++||++.
T Consensus 217 ----~~~~~~~~~~~~lg~-g~~~vD~~~~~-~g-~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 217 ----EVARLSVKAAEAVGG-GVVAVDLFESE-RG-LLVNEVNHTMEFKN 258 (280)
T ss_dssp ----HHHHHHHHHHHHTTC-SEEEEEEEEET-TE-EEEEEEETTCCCTT
T ss_pred ----HHHHHHHHHHHHhCC-CeEEEEEEEeC-CC-eEEEEEeCCCCccc
Confidence 789999999999999 99999999985 45 99999999999986
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=232.04 Aligned_cols=215 Identities=19% Similarity=0.149 Sum_probs=152.3
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHH-HHCCCCccCeEEEeCccccCCchh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l-~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+.+|+|++..... -. .+...|+.+|+ ++|++..++.+|+||..+|++ | +++|||+|++..+.+.+
T Consensus 81 ~~~d~V~~~~e~~-~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~---l~~~~gip~p~~~~~~~~~------- 146 (433)
T 2dwc_A 81 EKPDAIIPEIEAI-NL--DALFEFEKDGY-FVVPNARATWIAMHRERLRET---LVKEAKVPTSRYMYATTLD------- 146 (433)
T ss_dssp HCCSEEEECSSCS-CH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHH---HHHTSCCCCCCEEEESSHH-------
T ss_pred cCCCEEEECcccC-CH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHH---HHHhcCCCCCCeeEeCCHH-------
Confidence 5689999976211 11 23356889999 679999999999999999998 8 89999999999876532
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.++... + .....+|||+||+
T Consensus 147 -~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 147 -ELYEACEKI-GYPCHTKAIMSSSGKGSYFVKGPEDIPK---AWEEAKTKA------R---------GSAEKIIVEEHID 206 (433)
T ss_dssp -HHHHHHHHH-CSSEEEEECCC------EEECSGGGHHH---HHHC------------------------CCEEEEECCC
T ss_pred -HHHHHHHhc-CCCEEEEECCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------cCCCCEEEEccCC
Confidence 234455678 6999999999999999999999999886 444332210 0 0146799999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcC---CCCc-eeeCceEEEecCCccccccccccCCCceeEcCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK---CGSM-HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~---~~~~-~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~ 866 (953)
|. |++|.++.+ +|.. ..+.+....... .+++.. .+.|++
T Consensus 207 ~g~-------------------------E~sv~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~--------~~~p~~- 250 (433)
T 2dwc_A 207 FDV-------------------------EVTELAVRHFDENGEIVTTFPKPVGHYQI--DGDYHA--------SWQPAE- 250 (433)
T ss_dssp CSE-------------------------EEEECCEEEECTTSCEEEEEECCEEEEES--SSSEEE--------EEESCC-
T ss_pred CCe-------------------------eEEEEEEecccCCCCEeEEEecccceEEE--cCEEEE--------EEcCCC-
Confidence 65 999988875 4442 223333322211 222222 245765
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 867 ~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++++..+++++.+.+++++||+.|++++||+++. + ++||+|||++||.+..
T Consensus 251 --l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~-~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 251 --ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKG-D-KVWANEVSPRPHDTGM 301 (433)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEET-T-EEEEEEEESSCCGGGG
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-C-cEEEEEEeCCcCCCcc
Confidence 6889999999999999999999999999999984 3 8999999999997643
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=228.15 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=161.0
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+..|+|.+-+ ...+-.+...|+..|+ +|+++.+..+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 74 ~~~dvI~~~~---e~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~-------- 137 (389)
T 3q2o_A 74 EISDVVTYEF---ENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNA---IEKAGLPVATYRLVQNQE-------- 137 (389)
T ss_dssp HTCSEEEESC---CCCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHH---HHHTTCCCCCEEEESSHH--------
T ss_pred HhCCEeeecc---ccccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCeEEECCHH--------
Confidence 3468873322 1223334455666776 79999999999999999999 999999999999887633
Q ss_pred HHHHHHhhcCCCcEEEecCCCCC-CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDGC-STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gs-S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||+.+++ |.|+.++++.+|+..+ ++... +..+|||+||+
T Consensus 138 ~~~~~~~~~-g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~---~~~~~---------------------~~~~lvEe~i~ 192 (389)
T 3q2o_A 138 QLTEAIAEL-SYPSVLKTTTGGYDGKGQVVLRSEADVDEA---RKLAN---------------------AAECILEKWVP 192 (389)
T ss_dssp HHHHHHHHH-CSSEEEEESSCCSSSCCEEEESSGGGHHHH---HHHHH---------------------HSCEEEEECCC
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCCCeEEECCHHHHHHH---HHhcC---------------------CCCEEEEeccc
Confidence 234455678 6999999999976 6999999999999864 43321 35799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
|. +|++|.++++. |... ..|..+.....+++ ...+.|++ ++
T Consensus 193 g~------------------------~E~~v~~~~~~~G~~~-~~~~~e~~~~~g~~----------~~~~~p~~---l~ 234 (389)
T 3q2o_A 193 FE------------------------KEVSVIVIRSVSGETK-VFPVAENIHVNNIL----------HESIVPAR---IT 234 (389)
T ss_dssp CS------------------------EEEEEEEEECTTCCEE-ECCCEEEEEETTEE----------EEEEESCS---SC
T ss_pred Cc------------------------eEEEEEEEEcCCCCEE-EecCeeeEEcCCce----------EEEECCCC---CC
Confidence 84 49999999864 4433 34444433333332 23356765 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
+++.+++++.+.+++++||+.|+++|||+++. +|++||||||++||.|...
T Consensus 235 ~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~~~viEiNpR~~~s~~~ 285 (389)
T 3q2o_A 235 EELSQKAIAYAKVLADELELVGTLAVEMFATA-DGEIYINELAPRPHNSGHY 285 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEESSCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCCEEEEEeeCCCCCchhH
Confidence 99999999999999999999999999999985 6899999999999988654
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=230.69 Aligned_cols=214 Identities=19% Similarity=0.139 Sum_probs=161.0
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
..+|.|++. |...+...+..+++.+|+| |+++.++.+|+||..++++ |+++|||+|++..+.+.+
T Consensus 70 ~~~d~v~~~--~~~~~~~~~a~~~~~~gl~--g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~-------- 134 (403)
T 4dim_A 70 LNLDGAATC--CLDTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEA---FKKYNVNTARHFVVRNEN-------- 134 (403)
T ss_dssp SCCSEEECC--SCSTTHHHHHHHHHHHTCS--SCCHHHHHHHHCHHHHHHH---HHHHTCCCCCEECCCSHH--------
T ss_pred cCCCEEEeC--CcchhHHHHHHHHHHcCcC--CCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEeCCHH--------
Confidence 457888874 5555555788999999997 9999999999999999999 899999999998765432
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.+.... ....+|||+||+|
T Consensus 135 ~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~~-----------------~~~~~lvEe~i~g 193 (403)
T 4dim_A 135 ELKNALENL-KLPVIVKATDLQGSKGIYIAKKEEEAID---GFNETMNLT-----------------KRDYCIVEEFIEG 193 (403)
T ss_dssp HHHHHHHTS-CSSEEEECSCC-----CEEESSHHHHHH---HHHHHHHHC-----------------SSSCCEEEECCCS
T ss_pred HHHHHHhcC-CCCEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHhcC-----------------cCCcEEEEEccCC
Confidence 244556788 6999999999999999999999999886 555554431 1467999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
. |+++.++..+|....+.+... +.+..++ .....+..|++ ++++
T Consensus 194 ~-------------------------e~sv~~~~~~g~~~~~~~~~~-------~~~~~~~-~~~~~~~~p~~---l~~~ 237 (403)
T 4dim_A 194 Y-------------------------EFGAQAFVYKNDVLFVMPHGD-------ETYMSHT-AVPVGHYVPLD---VKDD 237 (403)
T ss_dssp E-------------------------EEEEEEEEETTEEEEEEEEEE-------EEEESSS-EEEEEEEESCC---SCHH
T ss_pred c-------------------------EEEEEEEEECCEEEEEEEecc-------eeccCCC-CcceeEEeCCC---CCHH
Confidence 7 899988876555443322111 1222222 11224456766 6899
Q ss_pred HHHHHHHHHHHHHHHcCCcc-eEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 873 ALDKCKQRIELIANALQLEG-FSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G-~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+.+++++.+.+++++||+.| ++++||+++ +|++||+|||++||-+.
T Consensus 238 ~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~iEiN~R~~~~~ 284 (403)
T 4dim_A 238 IIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIELTGRVGANC 284 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEEEEESSCCSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEEEEcCCCCCCc
Confidence 99999999999999999998 899999998 58999999999999654
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=224.06 Aligned_cols=242 Identities=14% Similarity=0.049 Sum_probs=158.1
Q ss_pred CcEEEEecCCCCCCccHHH--HHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 635 QATVFIAVHGGIGEDGTLQ--SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq--~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+|+|++ + +|+..++ ..||.+|+|++++ ..++++|+||..++++ |+++|||+|++ +.+.
T Consensus 63 ~d~i~~--~---~e~~~~~~~~~le~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gip~p~~--~~~~--------- 122 (334)
T 2r85_A 63 NAVVVP--T---GSFVAHLGIELVENMKVPYFGN-KRVLRWESDRNLERKW---LKKAGIRVPEV--YEDP--------- 122 (334)
T ss_dssp TEEECC--C---TTHHHHHCHHHHHTCCSCBBSC-TTHHHHHHSHHHHHHH---HHHTTCCCCCB--CSCG---------
T ss_pred CCEEEE--C---cchhhhhHHHHHHHcCCCccCC-HHHHHHHHhHHHHHHH---HHHcCCCCCCc--cCCh---------
Confidence 477653 2 3444333 3458999998865 5889999999999998 99999999998 3221
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
+++ .||+||||..+++|.||.+|++.+++.. +++..+... .+ .....+|||+||+|
T Consensus 123 ------~~l-~~P~vvKP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~~---~~-----------~~~~~~lvee~i~G 178 (334)
T 2r85_A 123 ------DDI-EKPVIVKPHGAKGGKGYFLAKDPEDFWR---KAEKFLGIK---RK-----------EDLKNIQIQEYVLG 178 (334)
T ss_dssp ------GGC-CSCEEEEECC----TTCEEESSHHHHHH---HHHHHHCCC---SG-----------GGCCSEEEEECCCC
T ss_pred ------HHc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhhc---cc-----------CCCCcEEEEeccCC
Confidence 235 5999999999999999999999998875 455443210 00 01367999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCC-CC-ceeeCceEEE-ecCCccccc--cccccC--CCceeEc---
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GS-MHSLMPSVTV-KESGDILSL--EEKFQG--GTGINLT--- 862 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~-~~~~~p~~~i-~~~~~~~d~--~~Ky~~--g~~~~~~--- 862 (953)
. |+++.++.+. +. ...+....++ ....+++++ +.++.. +......
T Consensus 179 ~-------------------------e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 233 (334)
T 2r85_A 179 V-------------------------PVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNI 233 (334)
T ss_dssp E-------------------------EEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEE
T ss_pred c-------------------------eeEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccCCceeeeCCC
Confidence 7 6665443321 11 1111111111 112233321 112211 1112223
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCC-CCCc----hHHHHHHhcC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPST----VLIHQALSEQ 932 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGl-t~~S----~l~~~a~~~~ 932 (953)
|+. +++++.+++++++.+++++| ++.|++++||+++. +|++||+|||++||. ++.+ .++++... .
T Consensus 234 p~~---l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g~~~viEiN~R~g~~~~~~~~g~~~~~l~~~-~ 308 (334)
T 2r85_A 234 PIV---LRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGTNIFVNGSPYTWLRYD-R 308 (334)
T ss_dssp ECC---CCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGGGGGTTCCTTGGGTCS-S
T ss_pred Ccc---cCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CCCEEEEEEeCCcCCCceeeecCccchheeec-C
Confidence 665 57788899999999999999 89999999999985 689999999999999 4443 34444322 2
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q 002207 933 PPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 933 ~~~yp~~l~~~li~~a~~r 951 (953)
+ +...+.+..+|++|++|
T Consensus 309 ~-~~~~~~~~~~i~~~~~~ 326 (334)
T 2r85_A 309 P-VSTGRRIAMEIREAIEN 326 (334)
T ss_dssp C-CCHHHHHHHHHHHHHHT
T ss_pred c-ccHHHHHHHHHHHHHHh
Confidence 3 33468888999999875
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=232.55 Aligned_cols=220 Identities=16% Similarity=0.229 Sum_probs=167.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~ 710 (953)
..+|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++ |+++|||+|++. .+.+.+
T Consensus 73 ~~~d~v~~~-~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~~------ 142 (449)
T 2w70_A 73 TGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA---MKKAGVPCVPGSDGPLGDDM------ 142 (449)
T ss_dssp HTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHH---HHHHTCCBCSBCSSCCCSCH------
T ss_pred cCCCEEEEC-CCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHH---HHHcCCCcCCCcccccCCHH------
Confidence 578998886 68888999899999999999999999999999999999999 899999999986 554322
Q ss_pred hhHH-HHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIW-HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~-~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+ .++.+++ +||+||||..+++|.||.+|++.+|+.++ ++.++... .... .+..++||+|
T Consensus 143 --~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~ 203 (449)
T 2w70_A 143 --DKNRAIAKRI-GYPVIIKASGGGGGRGMRVVRGDAELAQS---ISMTRAEA-----KAAF--------SNDMVYMEKY 203 (449)
T ss_dssp --HHHHHHHHHH-CSSEEEEETTCCTTTTCEEECSHHHHHHH---HHHHHHHH-----HHHH--------SCCCEEEEEC
T ss_pred --HHHHHHHHHh-CCcEEEEECCCCCCCCEEEeCCHHHHHHH---HHHHHHHH-----Hhhc--------CCCcEEEEec
Confidence 23 3445677 69999999999999999999999988864 44333210 0000 0467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|++|.++++. |....+. . + .+++..++. ......|++ .
T Consensus 204 i~g~------------------------~e~~v~~~~~~~G~~~~~~-~-~------~~~~~~~~~--~~~~~~p~~--~ 247 (449)
T 2w70_A 204 LENP------------------------RHVEIQVLADGQGNAIYLA-E-R------DCSMQRRHQ--KVVEEAPAP--G 247 (449)
T ss_dssp CSSC------------------------EEEEEEEEECTTSCEEEEE-E-E------EEEEEETTE--EEEEEESCT--T
T ss_pred cCCC------------------------eEEEEEEEEcCCCCEEEEe-c-e------ecccccCCc--ceeeeCCcc--c
Confidence 9984 49999999864 4433221 1 1 011111111 112345664 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||+++. |++||+|||++|+-+
T Consensus 248 l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~~~~viEiN~R~~~~ 296 (449)
T 2w70_A 248 ITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN--GEFYFIEMNTRIQVE 296 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--TEEEEEEEECSCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC--CCEEEEEEECCCCcc
Confidence 6889999999999999999999999999999983 789999999999754
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=227.65 Aligned_cols=294 Identities=15% Similarity=0.124 Sum_probs=190.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecc--c---cc-ccCCCCCccccccccccccC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS--A---QV-YSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~ 151 (953)
|||+||+||.|.| ++|..|++.++++|++.||+|+.++.+. .+..... + .. ....... .+.+....
T Consensus 2 m~i~il~~~~~~~-~~~~~s~~~l~~a~~~~G~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 73 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIKKDSSFAMLLEAQRRGYELHYMEMGD--LYLINGEARAHTRTLNVKQNYEE-WFSFVGEQ---- 73 (316)
T ss_dssp CEEEEECSCGGGC-CTTTCHHHHHHHHHHHTTCEEEEECGGG--EEEETTEEEEEEEEEEECSCSSC-CEEEEEEE----
T ss_pred ceEEEEeCcHHhC-CcCCChHHHHHHHHHHCCCEEEEEchhH--eEEECCeEEEEEeeeEeccCccc-ceeccCcc----
Confidence 5999999999876 6999999999999999999998775432 1111000 0 00 0000000 00000000
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCC---ch-HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGE---DG-GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GE---dg-~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
. .. ..++|+||+..|+..++ ++ .+.+.|+.+|+|++ +++.++++++||+.++++|+ |+|++..+.
T Consensus 74 -~----~~-~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~ 142 (316)
T 1gsa_A 74 -D----LP-LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLVTR 142 (316)
T ss_dssp -E----EE-GGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEEES
T ss_pred -c----cc-cccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEEeC
Confidence 0 00 12699999999988765 22 45667778999987 58999999999999999988 999998886
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC-CHHHHHHHHHHhHhcCCCCcEEEeccCCC--CeEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY-GVIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTA 304 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~-~~~el~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv 304 (953)
+.+ ++.++++. .+ |+||||..+++|.||.+++ +.+++...... +.......+|||+||+| +.|+++
T Consensus 143 ~~~----~~~~~~~~-----~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~-~~~~~~~~~lvqe~i~~~~~~~~~v 211 (316)
T 1gsa_A 143 NKA----QLKAFWEK-----HS-DIILKPLDGMGGASIFRVKEGDPNLGVIAET-LTEHGTRYCMAQNYLPAIKDGDKRV 211 (316)
T ss_dssp CHH----HHHHHHHH-----HS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHH-HTTTTTSCEEEEECCGGGGGCEEEE
T ss_pred CHH----HHHHHHHH-----cC-CEEEEECCCCCcccEEEecCChHHHHHHHHH-HHhcCCceEEEecccCCCCCCCEEE
Confidence 533 23333322 34 9999999999999999998 77776544433 22112368999999996 478888
Q ss_pred EEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHH---h
Q 002207 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR---L 381 (953)
Q Consensus 305 ~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~a---L 381 (953)
.+++ +. .+.+ + +.... .. -+|..++..++ .. .|..++++. +++|.+++++ +
T Consensus 212 ~~~~----g~--~~~~-~--~~r~~--------~~--~~~~~~~~~gg-~~--~~~~~~~~~----~~~a~~~~~~l~~~ 265 (316)
T 1gsa_A 212 LVVD----GE--PVPY-C--LARIP--------QG--GETRGNLAAGG-RG--EPRPLTESD----WKIARQIGPTLKEK 265 (316)
T ss_dssp EEET----TE--ECSE-E--EEEEC--------CS--SCSCCCGGGTC-EE--EEEECCHHH----HHHHHHHHHHHHHT
T ss_pred EEEC----CE--Eeee-E--EEEeC--------CC--CCceeEEccCC-cc--ccCCCCHHH----HHHHHHHHHHHHhC
Confidence 8873 21 1111 1 11111 11 13455555544 22 355666644 4555555554 6
Q ss_pred CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCC--CCCCCcchHHHHHHHhCCCHHHHHHHHHHHHh
Q 002207 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI--SGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456 (953)
Q Consensus 382 g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~--PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~ 456 (953)
|+ ++++|||+ |. ||+|||++ ||++ ....++|+++.+++..++...+
T Consensus 266 g~-~~~~vD~~---------------------g~-~~iEvN~r~~~~~~------~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 266 GL-IFVGLDII---------------------GD-RLTEINVTSPTCIR------EIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp TC-CEEEEEEE---------------------TT-EEEEEECSSCCCHH------HHHHHSSCCHHHHHHHHHHHHT
T ss_pred CC-cEEEEEec---------------------CC-EEEEEcCCCCcchH------HHHHhhCcCHHHHHHHHHHHHh
Confidence 87 69999962 44 89999995 4643 2346789999999888876654
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=227.64 Aligned_cols=218 Identities=14% Similarity=0.175 Sum_probs=160.6
Q ss_pred CCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 634 NQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
.+|+|.+-+ |+- .+..+.+.. .+++++.++++|+||..+|++ |+++|||+|++..+.+.+
T Consensus 73 ~~dvi~~~~-----E~~~~~~l~~l~~~~---~v~p~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~------ 135 (377)
T 3orq_A 73 KCDVITYEF-----ENISAQQLKLLCEKY---NIPQGYQAIQLLQDRLTEKET---LKSAGTKVVPFISVKEST------ 135 (377)
T ss_dssp HCSEEEESS-----TTSCHHHHHHHHHHS---CCTTTTHHHHHHHSHHHHHHH---HHHTTCCBCCEEEECSST------
T ss_pred hCCcceecc-----cccCHHHHHHHhhhc---CCCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCeEEECCHH------
Confidence 478874433 332 344444443 457899999999999999999 899999999999887643
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..++ +|.|+.++++.+|+.+ +++.+. ...+|||+|
T Consensus 136 --~~~~~~~~~-g~P~vvKp~~gg~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~ivEe~ 188 (377)
T 3orq_A 136 --DIDKAIETL-GYPFIVKTRFGGYDGKGQVLINNEKDLQE---GFKLIE---------------------TSECVAEKY 188 (377)
T ss_dssp --HHHHHHHHT-CSSEEEEESSSCCTTTTEEEECSTTSHHH---HHHHHT---------------------TSCEEEEEC
T ss_pred --HHHHHHHHc-CCCEEEEeCCCCCCCCCeEEECCHHHHHH---HHHhcC---------------------CCcEEEEcc
Confidence 244556778 699999999998 7999999999999885 454432 367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcC-CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|++|.++.+ +|... ..|..+.....+++ ...+.|+.
T Consensus 189 i~g~------------------------~E~sv~~~~~~~g~~~-~~~~~e~~~~~g~~----------~~~~~Pa~--- 230 (377)
T 3orq_A 189 LNIK------------------------KEVSLTVTRGNNNQIT-FFPLQENEHRNQIL----------FKTIVPAR--- 230 (377)
T ss_dssp CCEE------------------------EEEEEEEEECGGGCEE-ECCCEEEEEETTEE----------EEEEESCS---
T ss_pred CCCC------------------------EEEEEEEEEeCCCCEE-EECCEeEEEECCEE----------EEEECCCC---
Confidence 9994 4999999954 44433 34444432222222 23467776
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC----CC----CCchHHHHHHhcCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG----MT----PSTVLIHQALSEQPPMY 936 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG----lt----~~S~l~~~a~~~~~~~y 936 (953)
+++ .+++++.+.+++++||+.|+++||||++. +|++||+|||++|| +| ..|.+.+++.+..|..+
T Consensus 231 l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~v~EinpR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl 303 (377)
T 3orq_A 231 IDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSL 303 (377)
T ss_dssp SCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCC
T ss_pred CCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEeeCCcCCCCcEeehhcCCCHHHHHHHHHcCCCC
Confidence 344 78999999999999999999999999985 68999999999999 43 45555555555344333
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-22 Score=230.54 Aligned_cols=223 Identities=17% Similarity=0.178 Sum_probs=162.8
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 82 ~~~d~vi~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 148 (451)
T 2yrx_A 82 QAIDLTIVG-----PEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKEL---MKKYGIPTADHAAFTSYE----- 148 (451)
T ss_dssp TTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEESCHH-----
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 568999983 45553 45668899999999999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+... .+. .....+|||+|
T Consensus 149 ---~~~~~~~~~-~~PvVvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~~---~~g----------~~~~~~lvEe~ 208 (451)
T 2yrx_A 149 ---EAKAYIEQK-GAPIVIKADGLAAGKGVTVAQTVEEALA---AAKAALVDG---QFG----------TAGSQVVIEEY 208 (451)
T ss_dssp ---HHHHHHHHH-CSSEEEEECC----CCEEEESSHHHHHH---HHHHHHHHS---CCB----------TTBCCEEEEEC
T ss_pred ---HHHHHHHhc-CCcEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhcc---ccC----------CCCCeEEEEEC
Confidence 234455677 6999999999999999999999998876 444443310 000 01367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+ ....+++++.++..+....+.|++. +
T Consensus 209 i~G~-------------------------E~sv~~~~d-G~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~p~~~--l 258 (451)
T 2yrx_A 209 LEGE-------------------------EFSFMAFVN-GEKVYPLAIAQ--DHKRAYDGDEGPNTGGMGAYSPVPQ--I 258 (451)
T ss_dssp CCSE-------------------------EEEEEEEEE-TTEEEECCCBE--ECCEEETTTEEEECSCSEEEESCTT--S
T ss_pred CcCc-------------------------EEEEEEEEc-CCEEEEeeeEE--eccccccCCCCCCCCCCeEEccCCC--C
Confidence 9997 999999874 33322222211 1234566666666666667788752 5
Q ss_pred CHHHHHHH-HHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKC-KQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i-~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.+++ ++++++++++| ++.|+.++||+++. +| +||+|||++||.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 259 SDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG-PKVIEFNARFGDPE 313 (451)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-cEEEEEecCCCCcH
Confidence 78888888 66777777765 56799999999995 56 99999999999653
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=223.96 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=152.3
Q ss_pred CcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHH
Q 002207 635 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~ 714 (953)
+|+|.+-+ +....+ .++ .|+..| ++||++.++++|+||..+|++ |+++|||||+|..+.+.+ .+
T Consensus 43 ~d~it~e~-e~v~~~-~l~-~l~~~~--~v~p~~~a~~~~~DK~~~k~~---l~~~GIptp~~~~v~~~~--------e~ 106 (355)
T 3eth_A 43 QSVITAEI-ERWPET-ALT-RQLARH--PAFVNRDVFPIIADRLTQKQL---FDKLHLPTAPWQLLAERS--------EW 106 (355)
T ss_dssp TSEEEESC-SCCCCC-HHH-HHHHTC--TTBTTTTHHHHHHSHHHHHHH---HHHTTCCBCCEEEECCGG--------GH
T ss_pred CCEEEECc-CCcCHH-HHH-HHHhcC--CcCCCHHHHHHhcCHHHHHHH---HHHCccCCCCEEEECCHH--------HH
Confidence 46666654 222222 444 456667 579999999999999999999 899999999999887643 23
Q ss_pred HHHHhhcCCCcEEEecCCC-CCCcceEEeCC--cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 715 HELTSKLQCKTLCVKPARD-GCSTGVARLCC--AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 715 ~~~~~~lg~~PlvVKP~~~-gsS~GV~~v~~--~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.++.+++ +||+||||+++ ++|+|+++|++ .+|+.. + + . + .+|||+||+
T Consensus 107 ~~~~~~~-G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~---a----~-~-------------------~-~vivEe~I~ 157 (355)
T 3eth_A 107 PAVFDRL-GELAIVKRRTGGYDGRGQWRLRANETEQLPA---E----C-Y-------------------G-ECIVEQGIN 157 (355)
T ss_dssp HHHHHHH-CSEEEEEESSSCCTTTTEEEEETTCGGGSCG---G----G-T-------------------T-TEEEEECCC
T ss_pred HHHHHHc-CCCEEEEecCCCCCCCeEEEEcCCCHHHHHH---H----h-h-------------------C-CEEEEEccC
Confidence 4455678 69999999997 56799999999 888863 1 1 1 2 599999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
+. +|++|.++++........|..+.....+++++ .+.|+. +++
T Consensus 158 ~~------------------------~Eisv~v~~~~~G~~~~~p~~e~~~~~g~~~~----------~~~pa~---l~~ 200 (355)
T 3eth_A 158 FS------------------------GEVSLVGARGFDGSTVFYPLTHNLHQDGILRT----------SVAFPQ---ANA 200 (355)
T ss_dssp CS------------------------EEEEEEEEECTTSCEEECCCEEEEEETTEEEE----------EEECSS---CCH
T ss_pred CC------------------------cEEEEEEEEcCCCCEEEECCEEEEeeCCeEEE----------EECCCC---CCH
Confidence 54 49999999764333334454443322333221 245654 689
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++.+++++++.+++++||+.|+.+||||++ ++++||+||||+|+.+.
T Consensus 201 ~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~--~~~~~v~EinpR~~~sg 247 (355)
T 3eth_A 201 QQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINELAPRVHNSG 247 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEeeCCCCCCc
Confidence 999999999999999999999999999998 36899999999999854
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=229.83 Aligned_cols=230 Identities=18% Similarity=0.149 Sum_probs=164.5
Q ss_pred hcCCcEEEEecCCCCCCc--cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGED--GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEd--g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+..+|.|++ ..|+ ..++.+++.+|+| |+++.++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 100 ~~~id~Vip-----~sE~~l~~~a~~~e~~Gi~--g~~~~ai~~~~DK~~~k~~---l~~~GIpvp~~~~v~s~e----- 164 (474)
T 3vmm_A 100 MFGADAITT-----NNELFIAPMAKACERLGLR--GAGVQAAENARDKNKMRDA---FNKAGVKSIKNKRVTTLE----- 164 (474)
T ss_dssp HTTCSEEEE-----SCGGGHHHHHHHHHHTTCC--CSCHHHHHHTTCHHHHHHH---HHHTTSCCCCEEEECSHH-----
T ss_pred HcCCCEEEE-----CCcccHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 357899999 3566 5789999999999 9999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||+.+++|.||.++++.+||.++.+.+....... . ......+++.+|||+|
T Consensus 165 ---e~~~~~~~l-g~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~-----~-----~~~a~~~~~~vlVEe~ 230 (474)
T 3vmm_A 165 ---DFRAALEEI-GTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSI-----N-----VPKAVTFEAPFIAEEF 230 (474)
T ss_dssp ---HHHHHHHHS-CSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTS-----C-----CCTTCCCSCSEEEEEC
T ss_pred ---HHHHHHHHc-CCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhc-----c-----ccccccCCCeEEEEeC
Confidence 244566788 6999999999999999999999999987433332221110 0 0000112578999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+++.+ +.++|.. .|+++..+..++....+. ..+...... + .......|++ +
T Consensus 231 I~G~e~~~-----------~q~~~~~--~e~sv~~v~~dg~~~~v~-i~~~~~~~~-------~--~~~~~~~Pa~---l 284 (474)
T 3vmm_A 231 LQGEYGDW-----------YQTEGYS--DYISIEGIMADGEYFPIA-IHDKTPQIG-------F--TETSHITPSI---L 284 (474)
T ss_dssp CCBCHHHH-----------CSSSSSC--SEEEEEEEEETTEEEEEE-EEEECCCBT-------T--BCCEEEESCC---C
T ss_pred CCCceeee-----------eeccccc--ceeEEEEEEECCeEEEEE-EEeeccCCC-------c--cceEEEECCC---C
Confidence 99985332 0111211 267775443333322111 111111110 1 2234567876 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceE-EEEEEEEcCCCcEEEEeeCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFS-RIDAFVNVDNGEVLIIEVNTVPG 917 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~a-riDf~v~~~~g~~~viEINt~PG 917 (953)
+++..+++++.+.+++++||++|.+ |+||+++. +|++||+||||+++
T Consensus 285 ~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg~~~~iEvNpR~~ 332 (474)
T 3vmm_A 285 DEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARFA 332 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GGEEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CCCEEEEEEeCCCC
Confidence 8999999999999999999999988 79999996 68999999998776
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=230.54 Aligned_cols=223 Identities=16% Similarity=0.156 Sum_probs=165.2
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (422)
T 2xcl_A 61 NQVGLTIVG-----PEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDL---MKKYDIPTAEYETFTSFD----- 127 (422)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHH---HHHTTCCBCCEEEESCHH-----
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 467999983 45553 45668889999999999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+... .+.. ....+|||+|
T Consensus 128 ---~~~~~~~~~-~~P~vvKp~~~~~g~Gv~~v~~~~el~~---~~~~~~~~~---~~g~----------~~~~~lvEe~ 187 (422)
T 2xcl_A 128 ---EAKAYVQEK-GAPIVIKADGLAAGKGVTVAMTEEEAIA---CLHDFLEDE---KFGD----------ASASVVIEEY 187 (422)
T ss_dssp ---HHHHHHHHH-CSSEEEEESSCGGGTCEEEESSHHHHHH---HHHHHHTSC---TTGG----------GGSSEEEEEC
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhhh---hccC----------CCCeEEEEEC
Confidence 233445677 6999999999999999999999998875 455543210 0000 0367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+. ...+++++.+++.+....+.|++. +
T Consensus 188 i~g~-------------------------E~sv~~~~d-G~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (422)
T 2xcl_A 188 LSGE-------------------------EFSLMAFVK-GEKVYPMVIAQD--HKRAFDGDKGPNTGGMGAYSPVPQ--I 237 (422)
T ss_dssp CCSE-------------------------EEEEEEEEE-TTEEEECCCBEE--EEEEEGGGEEEEEEEEEEEESCTT--S
T ss_pred CcCc-------------------------EEEEEEEEc-CCEEEecceeee--eehhcCCCCCCCCCCCeeEccCCC--C
Confidence 9997 999999874 333222222111 123556665665555556788752 5
Q ss_pred CHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKCK-QRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i~-~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.++++ +++++++++| ++.|+.++||+++. +| +||+|||++||.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g-~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 238 SEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG-SKVIEFNARFGDPE 292 (422)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC-cEEEEEecCCCCcH
Confidence 788888884 4777777765 66799999999995 57 99999999999664
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=229.14 Aligned_cols=221 Identities=15% Similarity=0.180 Sum_probs=166.8
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
+..+|+|++. +|..+|+..++.+|+.+|+|++|++..++.+++||..+|++ |+++|||+|++. .+.+.
T Consensus 77 ~~~id~v~~~-~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~------ 146 (461)
T 2dzd_A 77 AHDVDAIHPG-YGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHA---AVNAGIPVIPGSDGPVDGL------ 146 (461)
T ss_dssp HTTCCEEECC-SSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHH---HHHTTCCBCCBCSSCCSSH------
T ss_pred HhCCCEEEEC-CCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHH---HHHcCCCCCCCcccCcCCH------
Confidence 3568999887 48888998899999999999999999999999999999999 999999999986 44332
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.+++ +||+||||..+++|.||.++++.+|+..+ ++.+.... .... .+..++||+|
T Consensus 147 --~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~ 207 (461)
T 2dzd_A 147 --EDVVAFAEAH-GYPIIIKAALGGGGRGMRIVRSKSEVKEA---FERAKSEA-----KAAF--------GSDEVYVEKL 207 (461)
T ss_dssp --HHHHHHHHHH-CSCEEEEESTTCSSSSEEEECCGGGHHHH---HHHHHHHH-----HHHT--------SCCCEEEEEC
T ss_pred --HHHHHHHHhc-CCcEEEEeCCCCCCCCEEEeCCHHHHHHH---HHHHHHHH-----Hhhc--------CCCcEEEEEC
Confidence 1234455678 69999999999999999999999999864 44332210 0000 0467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|+++.++++. |..+.+.+.... ...... ......|++ .
T Consensus 208 i~g~------------------------~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~~~-----~~~~~~P~~--~ 251 (461)
T 2dzd_A 208 IENP------------------------KHIEVQILGDYEGNIVHLYERDCS-----VQRRHQ-----KVVEVAPSV--S 251 (461)
T ss_dssp CCSC------------------------EEEEEEEEECTTCCEEEEEEEEEE-----EEETTE-----EEEEEESCT--T
T ss_pred CCCC------------------------eEEEEEEEEcCCCCEEEEEecccc-----cccccc-----ceEEECCcc--c
Confidence 9984 49999999864 333222211000 000000 122355763 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||+++. |++||+|||++|+.+
T Consensus 252 l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~~~~viEiN~R~~~~ 300 (461)
T 2dzd_A 252 LSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--DEFYFIEVNPRIQVE 300 (461)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--TEEEEEEEESSCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--CCEEEEEEECCCCCc
Confidence 6889999999999999999999999999999983 789999999999853
|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=225.70 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=159.6
Q ss_pred cCCcEEEEecCCCCCC--------ccHHHHHHHHc----CCCEeCCChHHHHHhcChHHHHHHHHHHHHC-------CCC
Q 002207 633 ENQATVFIAVHGGIGE--------DGTLQSLLEAE----GVPYTGPGVMASKTCMDKVATSLALNHLADL-------GVL 693 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GE--------dg~iq~llE~~----gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~-------GIp 693 (953)
..+|+||+.+||..|| ++.+|.+++.. |+|.+ ++..++..|.||..|.++ |+++ |||
T Consensus 62 ~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~---L~k~~~~~~~~gIp 137 (346)
T 2q7d_A 62 GPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYEL---IRKIEAYMEDDRIC 137 (346)
T ss_dssp CCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHH---HHHHHHHHCBTTEE
T ss_pred CCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHH---HHhhcccccCCCCC
Confidence 3579999999999887 58899887664 78755 567899999999999998 6765 999
Q ss_pred ccCeEEEeCccccCCchhhHHHHHH-hhcCCCcEEEecCCC-CC-CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELT-SKLQCKTLCVKPARD-GC-STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRA 770 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~-~~lg~~PlvVKP~~~-gs-S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~ 770 (953)
||++.++.+.+.. +....+. ..+ +||+||||..+ |+ |.|+.++.+.++|..+
T Consensus 138 ~P~t~~~~~~~~~-----~~~~~~~~~~l-g~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~------------------- 192 (346)
T 2q7d_A 138 SPPFMELTSLCGD-----DTMRLLEKNGL-TFPFICKTRVAHGTNSHEMAIVFNQEGLNAI------------------- 192 (346)
T ss_dssp CCCEEEECSCCCT-----THHHHHHHTTC-CSSEEEECSBCSSTTCCEEEEECSGGGTTC--------------------
T ss_pred CCCEEEEeCCCHH-----HHHHHHHhcCC-CCCEEEEecCCCcceeeeeEEecCHHHHHhc-------------------
Confidence 9999998753210 1111221 357 69999999974 33 7899999998887631
Q ss_pred cccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCC--ceeeCceEEEe-cCCccc
Q 002207 771 HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS--MHSLMPSVTVK-ESGDIL 847 (953)
Q Consensus 771 ~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~--~~~~~p~~~i~-~~~~~~ 847 (953)
...++|||||+.. | +|++|.|+|+.-- .....|.+++. ..+++|
T Consensus 193 ----------~~~~lvQefI~~~-------------------G----~dirv~VvG~~v~~~~r~sl~~~~~~~~~~~~~ 239 (346)
T 2q7d_A 193 ----------QPPCVVQNFINHN-------------------A----VLYKVFVVGESYTVVQRPSLKNFSAGTSDRESI 239 (346)
T ss_dssp -----------CCEEEEECCCCT-------------------T----EEEEEEEETTEEEEEEEECCCCCC----CCCCE
T ss_pred ----------CCCEEEEEeeCCC-------------------C----eEEEEEEECCEEEEEEEecCCCcCcCccccccc
Confidence 3569999999721 1 4999999986300 00011111121 246799
Q ss_pred cccc-ccc-CCCceeEcCC-----CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 848 SLEE-KFQ-GGTGINLTPP-----PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 848 d~~~-Ky~-~g~~~~~~P~-----~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+|+. ||. +|.+..++|. ... +++ .++++++|.+++++|||..+ +||++++.++|++||+|||+.|||+.
T Consensus 240 ~f~s~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~el~~lA~~a~~alGl~~~-gvDii~~~~~g~~~VlEVN~~PG~~g 315 (346)
T 2q7d_A 240 FFNSHNVSKPESSSVLTELDKIEGVFE-RPS--DEVIRELSRALRQALGVSLF-GIDIIINNQTGQHAVIDINAFPGYEG 315 (346)
T ss_dssp EEEGGGTSSTTCCCGGGCCSCCCSCCC-CCC--HHHHHHHHHHHHHHHCCCEE-EEEEEECTTTCCEEEEEEEESCCCTT
T ss_pred cccceeeccCCcccccccccccccccc-CCC--hHHHHHHHHHHHHHhCCceE-eeEEEeecCCCCEEEEEEeCCccccc
Confidence 9997 654 4555545551 111 222 46889999999999999965 69999974358899999999999999
Q ss_pred Cc
Q 002207 921 ST 922 (953)
Q Consensus 921 ~S 922 (953)
.+
T Consensus 316 ~~ 317 (346)
T 2q7d_A 316 VS 317 (346)
T ss_dssp CT
T ss_pred cc
Confidence 86
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=230.35 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=162.3
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+. .+...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 87 ~~~d~V~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 153 (452)
T 2qk4_A 87 KKIEFVVVG-----PEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEF---MDRHGIPTAQWKAFTKPE----- 153 (452)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHH---HHHTTCCBCCEEEESSHH-----
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHH---HHHCCCCCCCeEEECCHH-----
Confidence 468999983 5665 344667888999999999999999999999999 999999999999886532
Q ss_pred hhhHHHHHHhhcCCCc-EEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKT-LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~P-lvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
.+.++.+++ +|| +||||..+++|.||.+|++.+|+.. +++..+.. +.+. .....+|||+
T Consensus 154 ---~~~~~~~~~-g~P~vvvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~---~~~g----------~~~~~~lvEe 213 (452)
T 2qk4_A 154 ---EACSFILSA-DFPALVVKASGLAAGKGVIVAKSKEEACK---AVQEIMQE---KAFG----------AAGETIVIEE 213 (452)
T ss_dssp ---HHHHHHHHC-SSCEEEEEESBC---CCEEECSSHHHHHH---HHHHHTTC--------------------CCEEEEE
T ss_pred ---HHHHHHHhC-CCCeEEEEeCCCCCCCCEEEeCCHHHHHH---HHHHHHhh---hhcc----------CCCCeEEEEE
Confidence 234455678 699 9999999999999999999998875 45544321 0000 0136799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||+|+ |++|.++.+ |..+...+..+. ...+++++.++..+....+.|++.
T Consensus 214 ~i~G~-------------------------E~sv~~~~d-G~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~P~~~-- 263 (452)
T 2qk4_A 214 LLDGE-------------------------EVSCLCFTD-GKTVAPMPPAQD--HKRLLEGDGGPNTGGMGAYCPAPQ-- 263 (452)
T ss_dssp CCCSE-------------------------EEEEEEEEC-SSCEEECCCBEE--EEEEETTTEEEEEEEEEEEESCTT--
T ss_pred CCCCC-------------------------eEEEEEEEC-CCEEEEcceeee--cccccCCCCCCCCCCceeeccCcc--
Confidence 99997 999999974 443322333221 123555555665555556788762
Q ss_pred CCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 869 MSTEALDKCK-QRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 869 l~~~~~~~i~-~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++++.++++ +++++++++| ++.|++++||+++. +| +||+|||++||.+.
T Consensus 264 l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~~~~~ 319 (452)
T 2qk4_A 264 VSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG-PKVLEFNCRFGDPE 319 (452)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE-EEEEEEESSCCTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-cEEEEEeccCCCcH
Confidence 5788888886 6888888775 45799999999985 57 99999999999643
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=223.03 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=156.1
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++-+ -..+-.+-..|+.. .++|+++.++.+|+||..+|++ |+++|||||++..+.+.+
T Consensus 95 ~~~D~V~~~~---e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~v~~~~-------- 158 (419)
T 4e4t_A 95 GLCEAVSTEF---ENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRF---IEASGVPVAPHVVIESAA-------- 158 (419)
T ss_dssp HHCSEEEECC---TTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHH---HHHTTCCBCCEEEECSHH--------
T ss_pred hcCCEEEEcc---CcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHH---HHHcCcCCCCeEEECCHH--------
Confidence 4689988533 22333344556666 4889999999999999999999 899999999999887532
Q ss_pred HHHHHHhh----cCCCcEEEecC-CCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEe
Q 002207 713 IWHELTSK----LQCKTLCVKPA-RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787 (953)
Q Consensus 713 ~~~~~~~~----lg~~PlvVKP~-~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVE 787 (953)
.+.++.++ + ||+||||. .+++|.||.+|++.+|+.. +++.. . +..+|||
T Consensus 159 e~~~~~~~~~~~~--~P~VvKp~~~g~~G~Gv~~v~~~~el~~---a~~~~--~-------------------~~~~lvE 212 (419)
T 4e4t_A 159 ALAALDDAALDAV--LPGILKTARLGYDGKGQVRVSTAREARD---AHAAL--G-------------------GVPCVLE 212 (419)
T ss_dssp HHHTSCHHHHHTT--CSEEEEESSSCCTTTTEEEECSHHHHHH---HHHHT--T-------------------TCCEEEE
T ss_pred HHHHHHHhhcccc--CCEEEEecCCCCCCCceEEECCHHHHHH---HHHhc--C-------------------CCcEEEe
Confidence 12223334 5 89999999 6778899999999999875 34322 1 4689999
Q ss_pred ccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCC
Q 002207 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 788 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
+||+|. +|++|.++++........|..+.....++++ ..+.|++.
T Consensus 213 e~i~~~------------------------~Eisv~v~~~~~G~~~~~~~~e~~~~~g~~~----------~~~~Pa~~- 257 (419)
T 4e4t_A 213 KRLPLK------------------------YEVSALIARGADGRSAAFPLAQNVHHNGILA----------LTIVPAPA- 257 (419)
T ss_dssp ECCCEE------------------------EEEEEEEEECTTSCEEECCCEEEEEETTEEE----------EEEESCTT-
T ss_pred ecCCCC------------------------eEEEEEEEEcCCCCEEEEeCeEEEeeCCeEE----------EEEcCCCC-
Confidence 999964 4999999976543333334433322222221 23567752
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++++.+++++++.+++++||+.|+++||||++. +|++||||||++|+.+.
T Consensus 258 -l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~~~v~EiNpR~~~sg 308 (419)
T 4e4t_A 258 -ADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGSFVANEMAPRPHNSG 308 (419)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCCEEEEEEESSCCGGG
T ss_pred -CCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCCEEEEEEeCCCCCCC
Confidence 5899999999999999999999999999999995 68999999999999753
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=213.31 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=148.1
Q ss_pred CcEEEEecCCCCCCccHHHHHHHH-----cCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 635 QATVFIAVHGGIGEDGTLQSLLEA-----EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq~llE~-----~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+|+||+.+++.. +.+++.|+. .|+|+ ++++.++++|+||..++++ |+++|||+|++..+.+.+
T Consensus 56 ~d~v~~~~~~~~---~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~---l~~~gi~~P~~~~~~~~~----- 123 (324)
T 1z2n_X 56 PNAIITKRTHPV---GKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINAL---LIKNNIPIPNSFSVKSKE----- 123 (324)
T ss_dssp CSEEEECCSCSS---SHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHH---HHHTTCCCSCEEEESSHH-----
T ss_pred ceEEEEeccchH---HHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEeCCHH-----
Confidence 589998887654 457777777 79996 5789999999999999999 999999999999886532
Q ss_pred hhhHHHHHHhh--cCCCcEEEecCCCCCC---cceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 710 IVDIWHELTSK--LQCKTLCVKPARDGCS---TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 710 ~~~~~~~~~~~--lg~~PlvVKP~~~gsS---~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
.+.++.+. + +||+||||..+++| .|+.++++.++|.. . +..+
T Consensus 124 ---~~~~~~~~~~~-~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~----------~-------------------~~~~ 170 (324)
T 1z2n_X 124 ---EVIQLLQSKQL-ILPFIVKPENAQGTFNAHQMKIVLEQEGIDD----------I-------------------HFPC 170 (324)
T ss_dssp ---HHHHHHHTTCS-CSSEEEEESBCSSSSGGGEEEEECSGGGGTT----------C-------------------CSSE
T ss_pred ---HHHHHHHHcCC-CCCEEEeeCCCCCCccceeeEEEeCHHHHhh----------c-------------------CCCE
Confidence 12333344 4 49999999998777 99999999887641 1 4679
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC---------Ccccccc-----
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES---------GDILSLE----- 850 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~---------~~~~d~~----- 850 (953)
|||+||++. | +|++|.++++. .. +..+.... ..+|++.
T Consensus 171 lvqe~i~~~-------------------g----~~~~v~v~g~~--~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 222 (324)
T 1z2n_X 171 LCQHYINHN-------------------N----KIVKVFCIGNT--LK---WQTRTSLPNVHRCGIKSVDFNNQHLEDIL 222 (324)
T ss_dssp EEEECCCCT-------------------T----CEEEEEEETTE--EE---EEEECCCCCCCCSSCCEEEEETTBGGGGG
T ss_pred EEEEccCCC-------------------C----cEEEEEEECCE--EE---EEEecCcccccCCCccceeeccccchhhh
Confidence 999999863 1 38888888753 11 11121110 0144443
Q ss_pred -------cccc----------CCCc-eeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEee
Q 002207 851 -------EKFQ----------GGTG-INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912 (953)
Q Consensus 851 -------~Ky~----------~g~~-~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEI 912 (953)
+||. .+.. ....|.. ++ .+++++.|.+++++||+. +++|||+++.++|++||+||
T Consensus 223 ~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEv 295 (324)
T 1z2n_X 223 SWPEGVIDKQDIIENSANRFGSKILEDPILLNL---TS---EAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDV 295 (324)
T ss_dssp GSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTS---CC---HHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEE
T ss_pred ccccccccccccccccccchhhccccCCccccC---CC---HHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEE
Confidence 1211 0000 0011221 23 158899999999999997 99999999744689999999
Q ss_pred CCCCCCCCCc
Q 002207 913 NTVPGMTPST 922 (953)
Q Consensus 913 Nt~PGlt~~S 922 (953)
|++|||+..+
T Consensus 296 N~~Pg~~~~~ 305 (324)
T 1z2n_X 296 NVFPSYGGKV 305 (324)
T ss_dssp EESCCTTSCB
T ss_pred cCCCCcCCCC
Confidence 9999999987
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=237.86 Aligned_cols=250 Identities=14% Similarity=0.186 Sum_probs=136.7
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEe
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRR 701 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~ 701 (953)
+..++.++ ..+|+|+|.. |...|+..++..|+.+|+|++|+++.++.++.||..+|++ |+++|||+|+++ .+.
T Consensus 64 ~~i~~~a~~~~~daI~pg~-gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~---l~~~GVPvpp~~~~~~~ 139 (681)
T 3n6r_A 64 DKVMAAIRATGAQAVHPGY-GFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKI---AQEANVSTVPGYMGLIE 139 (681)
T ss_dssp HHHHHHHHHTCCSCCBCCS-SSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHH---HHTTTCCCCCC------
T ss_pred HHHHHHHHHhCcCEEEECC-CccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHH---HHHcCcCcCCccccCcC
Confidence 34444433 4678877764 6778999999999999999999999999999999999999 999999999985 333
Q ss_pred CccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+.+ .+.++.+++ +||+||||..+++|.||.+|++.+|+.+ +++.+.+... .. ..+
T Consensus 140 s~~--------e~~~~a~~i-gyPvVvKp~~ggggkGv~iv~~~~el~~---a~~~~~~ea~-----~~--------fg~ 194 (681)
T 3n6r_A 140 DAD--------EAVKISNQI-GYPVMIKASAGGGGKGMRIAWNDQEARE---GFQSSKNEAA-----NS--------FGD 194 (681)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHH--------HHHHHHHhc-CCcEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----Hh--------CCC
Confidence 322 133445678 6999999999999999999999999886 4444332100 00 014
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCcee
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~ 860 (953)
+.++||+||+|. +|++|.++++.. ..+.+ +... ..+.....| ...
T Consensus 195 ~~vlvEe~I~g~------------------------rei~V~v~~d~~G~vv~l-~~rd----~s~qr~~~k-----~~e 240 (681)
T 3n6r_A 195 DRIFIEKFVTQP------------------------RHIEIQVLCDSHGNGIYL-GERE----CSIQRRNQK-----VVE 240 (681)
T ss_dssp --------CCSC------------------------EEEEEEEECCSSSCCEEE-EEEE----CCCEETTEE-----CEE
T ss_pred CcEEEEeccCCC------------------------cEEEEEEEEeCCCCEEEE-eeee----cceeccCcc-----EEE
Confidence 689999999994 499999998753 33322 2211 011111112 233
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 861 ~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
..|++. +++++.+++.+.+.++++++|+.|++++||+++. +|++||+||||+++.+ ..+..++. | .++
T Consensus 241 ~~Pa~~--l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~~~~lEiNpR~~~~--~~~te~~t---G----vdl 308 (681)
T 3n6r_A 241 EAPSPF--LDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFLEMNTRLQVE--HPVTELIT---G----VDL 308 (681)
T ss_dssp EESCSS--CCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSCCCCCEEECSCCTT--HHHHHHHH---T----CCH
T ss_pred ecCCCC--CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCCEEEEecccccCCC--cHHhHHHh---C----CCH
Confidence 467653 6899999999999999999999999999999985 6899999999999765 22333332 1 256
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
++.+++.++
T Consensus 309 ~~~~l~~a~ 317 (681)
T 3n6r_A 309 VEQMIRVAA 317 (681)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 666666665
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-21 Score=214.62 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=142.7
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
.+.+|+|++..+ ...+....+.+++..|+| +|+++.++.+++||..+|++ |+++|||+|++.
T Consensus 61 ~~~~D~v~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~---l~~~gip~~~~~------------- 122 (363)
T 4ffl_A 61 SKRVDAVLPVNE-NLACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDY---FKSIGVPTPQDR------------- 122 (363)
T ss_dssp HTSSSEEEECCC-CHHHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHH---HHHTTCCCCCBS-------------
T ss_pred hcCCCEEEECCC-ChhHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHH---HHhcCCCCCCce-------------
Confidence 456899988753 333445677888999998 59999999999999999999 999999999862
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+ +||+||||+.+++|.|+.++++.+++.. ....+++|+||+
T Consensus 123 --------~i-g~P~vvKp~~g~g~~gv~~v~~~~~~~~-----------------------------~~~~~~~ee~i~ 164 (363)
T 4ffl_A 123 --------PS-KPPYFVKPPCESSSVGARIIYDDKDLEG-----------------------------LEPDTLVEEYVE 164 (363)
T ss_dssp --------CS-SSCEEEECSSCCTTTTCEEEC------C-----------------------------CCTTCEEEECCC
T ss_pred --------ec-CCCEEEEECCCCCCcCeEEeccHHHhhh-----------------------------hccchhhhhhcc
Confidence 23 6999999999999999999998777542 146789999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
|+ |++|.++++++............. +.+....+.|++. .
T Consensus 165 g~-------------------------e~sv~~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~---~- 204 (363)
T 4ffl_A 165 GE-------------------------VVSLEVVGDGSHFAVVKETLVHID-----------ETYDCHMVTPLPA---N- 204 (363)
T ss_dssp SE-------------------------EEEEEEEEESSCEEECCCEEEEEC-----------TTSCEEEEEECCC---C-
T ss_pred Cc-------------------------EEEEEEEEECCeEEEEEEEEeccC-----------CcccceeecchhH---H-
Confidence 97 999999988765544333322211 1223345667662 3
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC-CCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV-PGMTPS 921 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~-PGlt~~ 921 (953)
+++++.+.+++++||+.|+.++||++++ +++|||||||+ ||.++.
T Consensus 205 ---~~~~~~a~~~~~~l~~~G~~~vef~~~~--~~~~viEiN~R~~g~~~~ 250 (363)
T 4ffl_A 205 ---PLFRQISHDLAANLPLKGIMDVEAIFGP--KGLRVIEIDARFPSQTPT 250 (363)
T ss_dssp ---HHHHHHHHHHHHTTTCEEEEEEEEEEET--TEEEEEEEECSCCSSHHH
T ss_pred ---HHHHHHHHHHHHhCCccceeeeeeEEeC--CeEEEEEEeCCCCCChHH
Confidence 3578899999999999999999999983 56999999996 787653
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=243.88 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=136.0
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE-EEeC
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRK 702 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~-~v~~ 702 (953)
+.+++.++ ..+|+|++.. |...|+..++.+|+.+|+|++|++..++.++.||..+|++ |+++|||+|++. .+.+
T Consensus 93 ~~Il~~a~~~~iDaI~pg~-g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~l---l~~aGIPvpp~~~~v~s 168 (1236)
T 3va7_A 93 DKIINAAKKTGAQAIIPGY-GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREI---AERAKVPLVPGSGLIKD 168 (1236)
T ss_dssp HHHHHHHHHTTCSEEECCS-SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHH---HHHTTCCCCC-------
T ss_pred HHHHHHHHHhCCCEEEECC-ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeeEecCC
Confidence 34444433 4689999887 8888999999999999999999999999999999999999 999999999953 4443
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
.+ .+.++.+++ +||+||||..+++|+||.+|++.+|+.+ +++.+..... . ...+.
T Consensus 169 ~e--------ea~~~a~~i-GyPvVVKP~~GgGGkGV~iv~s~eEL~~---a~~~~~~~a~-----~--------~~~~~ 223 (1236)
T 3va7_A 169 AK--------EAKEVAKKL-EYPVMVKSTAGGGGIGLQKVDSEDDIER---VFETVQHQGK-----S--------YFGDA 223 (1236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH--------HHHHHHHHc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----h--------ccCCC
Confidence 22 123345678 6999999999999999999999999886 3444322100 0 00146
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.++||+||+|. +|++|.+++++.......+.... .+..+..| .....
T Consensus 224 ~vlVEeyI~G~------------------------rEisV~vl~Dg~g~vv~l~~rd~----s~qr~~~k-----~~e~~ 270 (1236)
T 3va7_A 224 GVFMERFVNNA------------------------RHVEIQMMGDGFGKAIAIGERDC----SLQRRNQK-----VIEET 270 (1236)
T ss_dssp ---------CC------------------------EEEEEEEEEESSSCEEEEEEEEE----EEEETTEE-----EEEEE
T ss_pred cEEEeeccCCC------------------------eEEEEEEEecCCceEEEEeeeee----eeeecCcc-----eEEEc
Confidence 79999999994 39999999875433222222111 11122222 23456
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHH
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFR 942 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~ 942 (953)
|++. +++++.+++.+.+.+++++||++|+++|||+++.++|++||||||++++-+. .+.+++. . .++++
T Consensus 271 Pa~~--l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g~~--~~te~vt-----G--vDlv~ 339 (1236)
T 3va7_A 271 PAPN--LPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEH--PITEMVT-----G--LDLVE 339 (1236)
T ss_dssp SCSS--CCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCTTH--HHHHHHH-----C--CCHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCCcc--HHHHHHH-----C--CCHHH
Confidence 7753 6899999999999999999999999999999996458999999999886532 3333332 1 25666
Q ss_pred HHHHHHh
Q 002207 943 KVLDLGS 949 (953)
Q Consensus 943 ~li~~a~ 949 (953)
.+++.++
T Consensus 340 ~~l~~a~ 346 (1236)
T 3va7_A 340 WMLRIAA 346 (1236)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 6666655
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=240.15 Aligned_cols=249 Identities=15% Similarity=0.189 Sum_probs=172.9
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEe
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRR 701 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~ 701 (953)
+..++.++ ..+|+|+|. +|...|+..++..|+.+|+|++|+++.++.+|.||..+|++ |+++|||+|++. .+.
T Consensus 67 ~~Ii~~a~~~~~DaI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~l---l~~aGIPvpp~~~~~v~ 142 (1150)
T 3hbl_A 67 ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT---AIKADLPVIPGTDGPIK 142 (1150)
T ss_dssp HHHHHHHHHTTCSEEECT-TTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHH---HHHTTCCBCCBCSSCBC
T ss_pred HHHHHHHHHhCCCEEEEC-CCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHH---HHHcCcCCCCccccCCC
Confidence 34444433 468998887 78888999999999999999999999999999999999999 999999999987 444
Q ss_pred CccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+.+. +.++.+++ +||+||||+.+++|.||.+|++.+||.. +++.+.+... .+. .+
T Consensus 143 s~ee--------a~~~a~~i-GyPvVVKP~~GgGg~Gv~vv~s~eeL~~---a~~~a~~~a~-----~~f--------g~ 197 (1150)
T 3hbl_A 143 SYEL--------AKEFAEEA-GFPLMIKATSGGGGKGMRIVREESELED---AFHRAKSEAE-----KSF--------GN 197 (1150)
T ss_dssp SSST--------TTTTGGGT-CSSEEEECCC-------CEECCSSSCTH---HHHSSSSSCC------------------
T ss_pred CHHH--------HHHHHHHc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----hhc--------CC
Confidence 4321 12334678 6999999999999999999999999985 4544432100 000 14
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCC-ceeeCceEEEecCCccccccccccCCCcee
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS-MHSLMPSVTVKESGDILSLEEKFQGGTGIN 860 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~-~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~ 860 (953)
..++||+||+|. +|++|.++++... .+.+...... +... ......
T Consensus 198 ~~vlVEeyI~G~------------------------reieV~vl~d~~G~vv~l~er~~s-----~qr~-----~~k~~e 243 (1150)
T 3hbl_A 198 SEVYIERYIDNP------------------------KHIEVQVIGDEHGNIVHLFERDCS-----VQRR-----HQKVVE 243 (1150)
T ss_dssp -CBEEECCCSSC------------------------EEEEEEEEECSSSCEEEEEEEEEE-----EESS-----SCEEEE
T ss_pred CcEEEEEccCCC------------------------cEEEEEEEEeCCCCEEEEEeeccc-----eecc-----CceeEE
Confidence 689999999995 4999999987533 2222111000 0000 111234
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 861 ~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
..|++. ++++..+++.+.+.++++++|++|++++||+++. + ++|||||||+++-.. .+..++. | .++
T Consensus 244 ~~Pa~~--l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~-d-~~y~iEINpR~~g~~--~vte~~t---G----vDl 310 (1150)
T 3hbl_A 244 VAPSVG--LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSG-D-EFFFIEVNPRVQVEH--TITEMVT---G----IDI 310 (1150)
T ss_dssp ESSCSS--CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-T-EEEEEEEECSCCTTH--HHHHHHH---C----CCH
T ss_pred ecCCCC--CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-C-eEEEEEEeCCCCCCc--ceeehhc---C----CCH
Confidence 567642 7899999999999999999999999999999984 3 899999999998542 2333332 1 256
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
++.+|+.|+
T Consensus 311 v~~~i~ia~ 319 (1150)
T 3hbl_A 311 VKTQILVAA 319 (1150)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 666666654
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=210.23 Aligned_cols=312 Identities=16% Similarity=0.143 Sum_probs=194.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc--
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL-- 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (953)
.+++|++|.|| + |+.++.++++.||+++.++-+.+...|. +.. ..+. +..-. .+...
T Consensus 17 ~~~~I~ilGs~-l---------~~~l~~aAk~lG~~vi~vd~~~~~p~~~---~~~----~ad~-~~~~d---~~~d~~~ 75 (361)
T 2r7k_A 17 DEITIATLGSH-T---------SLHILKGAKLEGFSTVCITMKGRDVPYK---RFK----VADK-FIYVD---NFSDIKN 75 (361)
T ss_dssp TSCEEEEESST-T---------HHHHHHHHHHTTCCEEEEECTTSCHHHH---HTT----CCSE-EEECS---SGGGGGS
T ss_pred cCCEEEEECcH-H---------HHHHHHHHHHCCCEEEEEECCCCCCccc---ccc----cCce-EEECC---CcccccH
Confidence 35789999988 5 7888999999999998776443211000 000 0010 00000 00000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
....+.+.+..|+|.|-.. .-.--.+..+++..|+|+.| +..+..+..||..+|++|+++|||||++ +.+.+
T Consensus 76 ~~~l~~l~~~~~vV~pe~~--~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~~~--- 147 (361)
T 2r7k_A 76 EEIQEKLRELNSIVVPHGS--FIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKK--YESPE--- 147 (361)
T ss_dssp HHHHHHHHHTTEEECCBHH--HHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESSGG---
T ss_pred HHHHHHHHHcCCEEEeCch--hhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCCHH---
Confidence 1222233334466654220 00000234555689999988 6788889999999999999999999976 33211
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C--C--CcEEEeccCCCCeEEEEEEEE
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I--D--DRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~--~--~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
...+|+||||..+++|+|+.++++.+|+.++..+++... + . .+++|||||+| .|+++.++-
T Consensus 148 -------------e~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G-~e~s~~~f~ 213 (361)
T 2r7k_A 148 -------------DIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFY 213 (361)
T ss_dssp -------------GCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEE
T ss_pred -------------HcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccce-EEeeEEEEe
Confidence 135799999999999999999999999877665554321 1 1 46999999998 999743332
Q ss_pred eCCCCccccEEecc-eEEEEeccCccccccCCccccc------ccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh
Q 002207 309 VGSGFDCHPVVLLP-TEVELQFQGSVDVREKDAIFNY------RRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 309 ~~~g~~~~~v~l~~-~ei~~~~~~~~~~~~~~~~~dy------~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL 381 (953)
.--.+ +..++.. .++..+ .++++.. .....+.....-+.|+.+++++.+++++++.++.++|
T Consensus 214 ~~~~~--~~e~~~id~r~~~~---------~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al 282 (361)
T 2r7k_A 214 SPLKD--EVELLGMDKRYESN---------IDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKA 282 (361)
T ss_dssp ETTTT--EEEEEEEEEEEEEE---------HHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHH
T ss_pred cccCC--eeEEEEecceEEee---------cccceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 10001 1111111 111111 0111110 0001111101112399999999999999999999999
Q ss_pred ------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCC-----CcchHHHHHHHhCCCHHHHHHH
Q 002207 382 ------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME-----QTSFLFQQASKVGFSHSNILRT 450 (953)
Q Consensus 382 ------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t-----~~S~~p~~a~~~G~s~~~ll~~ 450 (953)
|+.|...+|||+ +++|+++|+||||+||-. ..|-|..+..-.++|..+-+.+
T Consensus 283 ~~~~~~~~~G~~~vE~fv-----------------t~dg~i~V~EIapR~gGg~~~~~~g~p~~~l~~~~~~~~g~r~~~ 345 (361)
T 2r7k_A 283 KELVPPGMIGPFCLQSLC-----------------NENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQRIAR 345 (361)
T ss_dssp HHHSTTCCCEEEEEEEEE-----------------CTTSCEEEEEEESSBCGGGGGGTTCCTTHHHHHSSCCCHHHHHHH
T ss_pred HhhccCCccceEEEEEEE-----------------cCCCCEEEEEEcCCCCCCcccccCCCCchheeecCCCCHHHHHHH
Confidence 899999999987 678899999999999843 2355777776789998888877
Q ss_pred HHHHHhhh
Q 002207 451 IIGHACSR 458 (953)
Q Consensus 451 li~~a~~r 458 (953)
=|+.|+++
T Consensus 346 e~~~~~~~ 353 (361)
T 2r7k_A 346 EIKMALQL 353 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 78888776
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=214.22 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=130.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++..++.......++..|+..|+|++|++..++.+|+||..++++ |+++|||+|++.. .. + +
T Consensus 71 ~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~-~~-~-------~ 138 (331)
T 2pn1_A 71 EGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEY---CLRQGIAHARTYA-TM-A-------S 138 (331)
T ss_dssp HTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHH---HHHHTCCCCCEES-SH-H-------H
T ss_pred cCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHH---HHHcCCCCCcEEe-cH-H-------H
Confidence 568999997655443444567788888999999999999999999999999 8999999999764 11 1 1
Q ss_pred HHHHHH--hhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 713 IWHELT--SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 713 ~~~~~~--~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
+.+.. +.+ +||+||||..+++|.||.++++.+++.. +++. ...+|||+||
T Consensus 139 -~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~---~~~~-----------------------~~~~lvee~i 190 (331)
T 2pn1_A 139 -FEEALAAGEV-QLPVFVKPRNGSASIEVRRVETVEEVEQ---LFSK-----------------------NTDLIVQELL 190 (331)
T ss_dssp -HHHHHHTTSS-CSCEEEEESBC-------------------------------------------------CEEEEECC
T ss_pred -hhhhhhcccC-CCCEEEEeCCCCCCCCeEEeCCHHHHHH---HHHh-----------------------CCCeEEEecC
Confidence 22222 467 6999999999999999999999888774 2221 3579999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcC--CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
+|+ |++|.++.+ +|......+..+.. +..|......|.
T Consensus 191 ~G~-------------------------e~~v~~~~d~~~G~~~~~~~~~~~~-----------~~~g~~~~~~~~---- 230 (331)
T 2pn1_A 191 VGQ-------------------------ELGVDAYVDLISGKVTSIFIKEKLT-----------MRAGETDKSRSV---- 230 (331)
T ss_dssp CSE-------------------------EEEEEEEECTTTCCEEEEEEEEEEE-----------EETTEEEEEEEE----
T ss_pred CCc-------------------------EEEEEEEEecCCCeEEEEEEEEEEE-----------ecCCceeEeEEe----
Confidence 997 999999985 45544333322211 112222222221
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG 917 (953)
.. +++++.+.+++++||+.|++++||+++ +|++||+|||++++
T Consensus 231 ~~----~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g~~~~iEiN~R~~ 273 (331)
T 2pn1_A 231 LR----DDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLSEINPRFG 273 (331)
T ss_dssp CC----HHHHHHHHHHHTTTCCCEEEEEEEEEE--TTEEEEEEEESSCC
T ss_pred cc----HHHHHHHHHHHHHhCCcceEEEEEEEc--CCCEEEEEEeCCCC
Confidence 12 467888999999999999999999964 68999999999643
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=237.86 Aligned_cols=222 Identities=16% Similarity=0.209 Sum_probs=124.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~ 710 (953)
..+|+|++. +|...|+..++.+|+.+|+|++|+++.++.++.||..+|++ |+++|||+|++. .+.+.+
T Consensus 92 ~~iD~V~pg-~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~---l~~~GIPvp~~~~~~v~s~e------ 161 (1165)
T 2qf7_A 92 SGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNL---AISVGVPVVPATEPLPDDMA------ 161 (1165)
T ss_dssp HTCSEEECC-SSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHH---HHHTTCCBC-----------------
T ss_pred hCCCEEEEC-CCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHH---HHHcCCCCCCeeCcCCCCHH------
Confidence 568999887 58888999999999999999999999999999999999999 999999999987 454322
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+||.+ +++.+..... ... .+..++||+||
T Consensus 162 --ea~~~a~~i-gyPvVVKp~~g~GG~Gv~iv~s~eEL~~---a~~~~~~~a~-----~~f--------g~~~vlVEefI 222 (1165)
T 2qf7_A 162 --EVAKMAAAI-GYPVMLKASWGGGGRGMRVIRSEADLAK---EVTEAKREAM-----AAF--------GKDEVYLEKLV 222 (1165)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred --HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----hhc--------CCCcEEEEEec
Confidence 123344567 6999999999999999999999999886 4444332100 000 14679999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCC-ceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS-MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~-~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
+|. +|++|.++++... .+.+.+... .+... .+......|++. +
T Consensus 223 ~gg------------------------~EisV~vl~D~~G~vv~l~~r~~-----s~~r~-----~~~~~e~~Pa~~--l 266 (1165)
T 2qf7_A 223 ERA------------------------RHVESQILGDTHGNVVHLFERDC-----SVQRR-----NQKVVERAPAPY--L 266 (1165)
T ss_dssp SSE------------------------EEEEEEEEECTTSCEEEEEEEEE-----EEEET-----TEEEEEEESCTT--C
T ss_pred cCC------------------------cEEEEEEEEcCCCcEEEEEeecc-----cceec-----ccceEEeccccc--C
Confidence 963 4999999987533 222211100 01111 112344667642 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++++.+++.+.+.+++++||+.|++++||+++.++|++||||||++++.+
T Consensus 267 ~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 267 SEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVE 316 (1165)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCCCC
Confidence 89999999999999999999999999999998336899999999999864
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=191.82 Aligned_cols=204 Identities=14% Similarity=0.157 Sum_probs=137.3
Q ss_pred CCcEEEEecCCCCCCc---c-HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 634 NQATVFIAVHGGIGED---G-TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEd---g-~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
.+|+||+..|+..+++ + .+.+.|+.+|+|++ +++.++++|+||..++++ |+ |+|++..+.+.+
T Consensus 79 ~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~---l~----~~P~t~~~~~~~----- 145 (316)
T 1gsa_A 79 DLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWF---SD----LTPETLVTRNKA----- 145 (316)
T ss_dssp GSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGG---TT----TSCCEEEESCHH-----
T ss_pred cCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhh---hh----cCCCeEEeCCHH-----
Confidence 4799999999987752 2 45566678999986 578999999999999998 55 999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeC-CcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC-CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~-~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
.+.++.+++ + |+||||..+++|.||.+++ +.+++.. +++..... ....+|||+
T Consensus 146 ---~~~~~~~~~-~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~---~~~~~~~~------------------~~~~~lvqe 199 (316)
T 1gsa_A 146 ---QLKAFWEKH-S-DIILKPLDGMGGASIFRVKEGDPNLGV---IAETLTEH------------------GTRYCMAQN 199 (316)
T ss_dssp ---HHHHHHHHH-S-SEEEECSSCCTTTTCEEECTTCTTHHH---HHHHHTTT------------------TTSCEEEEE
T ss_pred ---HHHHHHHHc-C-CEEEEECCCCCcccEEEecCChHHHHH---HHHHHHhc------------------CCceEEEec
Confidence 233445567 5 9999999999999999998 8888875 33332111 136799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||+|.. + .|+++.++++ ..... +..+....+ +|..+++.|.. ..|.+
T Consensus 200 ~i~~~~------------------~----~~~~v~~~~g--~~~~~-~~~r~~~~~---~~~~~~~~gg~--~~~~~--- 246 (316)
T 1gsa_A 200 YLPAIK------------------D----GDKRVLVVDG--EPVPY-CLARIPQGG---ETRGNLAAGGR--GEPRP--- 246 (316)
T ss_dssp CCGGGG------------------G----CEEEEEEETT--EECSE-EEEEECCSS---CSCCCGGGTCE--EEEEE---
T ss_pred ccCCCC------------------C----CCEEEEEECC--EEeee-EEEEeCCCC---CceeEEccCCc--cccCC---
Confidence 999720 0 3888888753 22110 222222122 34445554433 23444
Q ss_pred CCHHHHHHHHHHHHHHHHH---cCCcceEEEEEEEEcCCCcEEEEeeCCC--CCCCC
Q 002207 869 MSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTV--PGMTP 920 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~a---Lg~~G~ariDf~v~~~~g~~~viEINt~--PGlt~ 920 (953)
++++ +++.+.+++++ +|+ ++++|||+ |. ||+|||++ ||++.
T Consensus 247 ~~~~----~~~~a~~~~~~l~~~g~-~~~~vD~~-----g~-~~iEvN~r~~~~~~~ 292 (316)
T 1gsa_A 247 LTES----DWKIARQIGPTLKEKGL-IFVGLDII-----GD-RLTEINVTSPTCIRE 292 (316)
T ss_dssp CCHH----HHHHHHHHHHHHHHTTC-CEEEEEEE-----TT-EEEEEECSSCCCHHH
T ss_pred CCHH----HHHHHHHHHHHHHhCCC-cEEEEEec-----CC-EEEEEcCCCCcchHH
Confidence 3443 44555555554 687 58999987 44 89999995 57654
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=207.66 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=134.0
Q ss_pred ECCCHHHHHHhc-cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC--
Q 002207 193 VGTGSRACRQAF-DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY-- 269 (953)
Q Consensus 193 vGs~~~a~~i~~-DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~-- 269 (953)
+|+++.++.+++ ||..+|++|+++|||||++..+.+.+.. .+++. ...+||+||||..+++|+||.+++
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~ea----~~~~~----~~~g~PvVVKP~~G~~G~GV~iv~~~ 542 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEA----LNYFS----QIQDKPIVVKPKSTNFGLGISIFKTS 542 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETTTTH----HHHHH----HSSSSCEEEEETTCCSSSSCEEESSC
T ss_pred eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCHHHH----HHHHH----HhcCCcEEEEeCCCCCCCCEEEEeCC
Confidence 577777777776 9999999999999999999988765432 12221 126789999999999999999998
Q ss_pred -CHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEE---eccCccc-----------
Q 002207 270 -GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL---QFQGSVD----------- 334 (953)
Q Consensus 270 -~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~---~~~~~~~----------- 334 (953)
+.+++.+++..++. ++..+|||+||+| +|++|.|++ +. ++.+.++.. ..+|..+
T Consensus 543 ~s~eel~~a~~~~~~--~~~~vlVEefI~G-~E~~v~Vvg----g~----vvaa~~r~p~~v~GdG~~tI~eLI~~~n~d 611 (750)
T 3ln6_A 543 ANLASYEKAIDIAFT--EDSAILVEEYIEG-TEYRFFVLE----GD----CIAVLLRVAANVVGDGIHTISQLVKLKNQN 611 (750)
T ss_dssp CCHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEEET----TE----EEEEEEEECCEEECCTTCCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh--hCCcEEEEeccCC-CEEEEEEEC----CE----EEEEEEEecceEecCCccCHHHHHHhhccC
Confidence 88888777665543 4679999999997 999999994 22 222222221 0111100
Q ss_pred ---------------------------------cccCCc--ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHH
Q 002207 335 ---------------------------------VREKDA--IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379 (953)
Q Consensus 335 ---------------------------------~~~~~~--~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~ 379 (953)
+.+.++ +..+.++...|+ ....+...+++ +++++|.++++
T Consensus 612 p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg-~~~d~td~i~p----~~~~~a~~aa~ 686 (750)
T 3ln6_A 612 PLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGG-DSIDVTNTMDP----TYKQLAAEMAE 686 (750)
T ss_dssp TTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTC-EEEECTTTSCH----HHHHHHHHHHH
T ss_pred ccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCC-ceeeccccCCH----HHHHHHHHHHH
Confidence 000000 112334444444 33333333444 55899999999
Q ss_pred HhCCCCeeEeeeeecCCCCccccccccccCc-ccCCcEEEEeecCCCCCCC
Q 002207 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGS-TEWGTILFTDINLISGMEQ 429 (953)
Q Consensus 380 aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~-~~dG~~~~lEIN~~PG~t~ 429 (953)
++|+. +++||+++.+.+ .. . .+.|.+.|+|||..||+..
T Consensus 687 ~igl~-~~GvDli~~di~--------~~--~~~~~~~~~iiEvN~~pg~~~ 726 (750)
T 3ln6_A 687 AMGAW-VCGVDLIIPNAT--------QA--YSKDKKNATCIELNFNPLMYM 726 (750)
T ss_dssp HHTCS-SCEEEEEESCSS--------SC--CCTTTTCCEEEEEESSCCCHH
T ss_pred HhCCC-eEEEEEEecCcc--------cc--ccccCCCeEEEEEcCCcchhh
Confidence 99987 999999862100 00 0 1245689999999999753
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-19 Score=195.51 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=172.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|+|++|.|| + |+.++.++++.||+|++++-+.+...+ ++. ..+|-....... .+
T Consensus 3 ~~I~~lGsg-l---------~~~~~~aAk~lG~~viv~d~~~~~p~~---~a~----~~ad~~~~~~~~-------~d-- 56 (320)
T 2pbz_A 3 LIVSTIASH-S---------SLQILLGAKKEGFKTRLYVSPKRRPFY---SSL----PIVDDLVVAEEM-------TS-- 56 (320)
T ss_dssp -CEEEESST-T---------HHHHHHHHHHTTCCEEEEECTTTHHHH---HTC----TTCSEEEECSCS-------CC--
T ss_pred eEEEEEcCH-h---------HHHHHHHHHHCCCEEEEEECCCCCccc---hhh----hcCCeEEECCcH-------HH--
Confidence 689999999 5 888999999999999977654321000 000 000100000000 00
Q ss_pred HhhccCcCEEEEcCCCCCCCchHH--HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGI--QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~i--q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
+.+..|++.|.. |+-.. -..||.+++|+.++ ..+...++||...+++|+++|||+|+++. .++
T Consensus 57 --l~~~~dvitpe~-----e~v~~~~l~~le~~~~p~~p~-~~~l~~~~dr~~~~~~l~~~Gip~P~~~~---~ee---- 121 (320)
T 2pbz_A 57 --ILNDDGIVVPHG-----SFVAYLGIEAIEKAKARFFGN-RRFLKWETTFELQDKALEGAGIPRVEVVE---PED---- 121 (320)
T ss_dssp --TTCCSSBCCCBT-----THHHHSCHHHHHTCCSCCBSC-SSGGGGGSCHHHHHHHHHHHTCCBCCBCC---SCC----
T ss_pred --HHhcCCEEEecc-----cchhHHHHHHHHHcCCCcCCC-HHHHHHHHhHHHHHHHHHHCCcCCCCeeC---HhH----
Confidence 122457765332 22111 12357899998765 57788999999999999999999999872 111
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
+ .++||+||||..+++|+|++++++ +|+..+.... +.+++|||||+| .+++..++-.-- .+
T Consensus 122 ~----------~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~-----~~~~IiEEfI~g-~~~~~~~f~~~~--~g 182 (320)
T 2pbz_A 122 A----------KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL-----EEPYRVERFIPG-VYLYVHFFYSPI--LE 182 (320)
T ss_dssp C----------CSSCCEEEECC------------C-EECSCCCC---------CCEEEECCCS-CEEEEEEEEETT--TT
T ss_pred c----------CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc-----CCCEEEEeeece-EecceeEEeccc--cC
Confidence 1 257899999999999999999999 8864322111 257999999997 888744432100 11
Q ss_pred ccEEecc-eEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh------CCCCeeE
Q 002207 316 HPVVLLP-TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL------GLCDFAR 388 (953)
Q Consensus 316 ~~v~l~~-~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL------g~~G~ar 388 (953)
++..+.+ .+++. .++.++.. ...+.....-..|+.+++++.+++++++.++.++| |+.|...
T Consensus 183 ~~e~~~~~~r~e~----------~~g~~~~p-~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~ 251 (320)
T 2pbz_A 183 RLELLGVDERVLI----------ADGNARWP-VKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFA 251 (320)
T ss_dssp EEEEEEEEEEEET----------TCSSSSSC-CSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEE
T ss_pred ceeEEEecceEEE----------ECCeeecc-cCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEE
Confidence 1222122 11111 12222110 00111101112388889999999999999999999 9999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC-CC-cchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQ-TSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~-t~-~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
|| + ++||++||+||||+||- |. .|-|..+..-.++|..+-+.+=|+.|+++-
T Consensus 252 vE-~------------------~~dg~~~v~EIapR~~GGt~~~~~y~~~~~~~~~~~g~r~~~e~~~~~~~~ 305 (320)
T 2pbz_A 252 LH-F------------------AYDGSFKAIGIASRIDGGSNADHWYSELYWGERLSMGRRIARELRLAEEED 305 (320)
T ss_dssp EE-E------------------ECSSSCEEEEEESSBCSGGGSCCCCHHHHSSSCCCHHHHHHHHHHHHHTTT
T ss_pred EE-E------------------cCCCcEEEEEecCCCCCCCCccCCceeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 99 4 46788999999999653 11 144555555678998888888888888763
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=198.28 Aligned_cols=189 Identities=18% Similarity=0.165 Sum_probs=133.0
Q ss_pred eCCChHHHHHhc-ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe
Q 002207 664 TGPGVMASKTCM-DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742 (953)
Q Consensus 664 ~G~~~~as~l~~-DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v 742 (953)
+|++..++.+++ ||..+|++ |+++|||||++..+.+.+ +..+.+...+ +||+||||..+++|.||.++
T Consensus 471 tg~~~~~a~~~~~DK~~tk~l---L~~~GIPvP~~~~~~~~~-------ea~~~~~~~~-g~PvVVKP~~G~~G~GV~iv 539 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKI---LDEKHFPTPFGDEFTDRK-------EALNYFSQIQ-DKPIVVKPKSTNFGLGISIF 539 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHH---HHHTTCCCCCCCCEETTT-------THHHHHHHSS-SSCEEEEETTCCSSSSCEEE
T ss_pred eCCCHHHHHHHHhCHHHHHHH---HHHCCcCCCCEEEECCHH-------HHHHHHHHhc-CCcEEEEeCCCCCCCCEEEE
Confidence 788888888887 99999999 999999999999887643 1222233567 69999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEE
Q 002207 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITV 822 (953)
Q Consensus 743 ~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv 822 (953)
++..+.+++.++++.++.+ +..+|||+||+|+ |++|
T Consensus 540 ~~~~s~eel~~a~~~~~~~-------------------~~~vlVEefI~G~-------------------------E~~v 575 (750)
T 3ln6_A 540 KTSANLASYEKAIDIAFTE-------------------DSAILVEEYIEGT-------------------------EYRF 575 (750)
T ss_dssp SSCCCHHHHHHHHHHHHHH-------------------CSEEEEEECCCSE-------------------------EEEE
T ss_pred eCCCCHHHHHHHHHHHHhh-------------------CCcEEEEeccCCC-------------------------EEEE
Confidence 8433344444577776655 5789999999997 8888
Q ss_pred EEEcCCCCceeeCceEEEecC----Cccc---------------------------------------------------
Q 002207 823 GVIGKCGSMHSLMPSVTVKES----GDIL--------------------------------------------------- 847 (953)
Q Consensus 823 ~vl~~~~~~~~~~p~~~i~~~----~~~~--------------------------------------------------- 847 (953)
.|+++. +++.++..+. .+..
T Consensus 576 ~Vvgg~-----vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge 650 (750)
T 3ln6_A 576 FVLEGD-----CIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGT 650 (750)
T ss_dssp EEETTE-----EEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTC
T ss_pred EEECCE-----EEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCC
Confidence 888753 2222222110 0000
Q ss_pred ----cccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc-------CCCcEEEEeeCCCC
Q 002207 848 ----SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV-------DNGEVLIIEVNTVP 916 (953)
Q Consensus 848 ----d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~-------~~g~~~viEINt~P 916 (953)
.+.+....|+.. . ++++++..+++++|.++++++|+. +++||++... +.|..+|||||..|
T Consensus 651 ~v~L~~~~Nls~Gg~~--~-----d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~p 722 (750)
T 3ln6_A 651 KIELRRNSNISTGGDS--I-----DVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNP 722 (750)
T ss_dssp EEESCSSCCTTTTCEE--E-----ECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSC
T ss_pred EEEEeecccccCCCce--e-----eccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCc
Confidence 001111111111 1 123455678899999999999988 9999999863 24567999999999
Q ss_pred CCCC
Q 002207 917 GMTP 920 (953)
Q Consensus 917 Glt~ 920 (953)
|+.-
T Consensus 723 g~~~ 726 (750)
T 3ln6_A 723 LMYM 726 (750)
T ss_dssp CCHH
T ss_pred chhh
Confidence 9954
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=200.18 Aligned_cols=228 Identities=14% Similarity=0.054 Sum_probs=142.9
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEE-------CCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV-------GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyv-------Gs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
...+|++|..-.+. +..+...-++.|+ |++..+..++.||..+|++|+++|||||++..+.+.+.
T Consensus 444 ~~gid~~vlg~e~~------l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~e-- 515 (757)
T 3ln7_A 444 QKGIHTEILDENDQ------FLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEK-- 515 (757)
T ss_dssp HHTCEEEEEETTTT------EEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCHHH--
T ss_pred HhCCCEEEECCCHH------HHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCHHH--
Confidence 45899997643332 2112223333444 33446666666999999999999999999998876432
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEe----CCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA----YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v----~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
+.+.+. ...+||+||||..+++|+||.++ ++.+++.++...++. ++..+|||+||+| +|++|.|++
T Consensus 516 --a~~~~~----~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~--~~~~vlVEefI~G-~Ei~v~Vlg- 585 (757)
T 3ln7_A 516 --AVASYA----LFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFR--EDKEVMVEDYLVG-TEYRFFVLG- 585 (757)
T ss_dssp --HHHGGG----GSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHH--HCSSEEEEECCCS-EEEEEEEET-
T ss_pred --HHHHHH----HhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHh--cCCcEEEEEcCCC-cEEEEEEEC-
Confidence 212221 23688999999999999999999 789887766655443 4678999999998 999999994
Q ss_pred CCCCccccEEecceEEEE---eccCcc--------------------------------------------ccccCCc--
Q 002207 310 GSGFDCHPVVLLPTEVEL---QFQGSV--------------------------------------------DVREKDA-- 340 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~---~~~~~~--------------------------------------------~~~~~~~-- 340 (953)
+. ++ ...++.. ..+|.. ++.+.++
T Consensus 586 ---gk--vv--aai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v 658 (757)
T 3ln7_A 586 ---DE--TL--AVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLV 658 (757)
T ss_dssp ---TE--EE--EEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEE
T ss_pred ---CE--EE--EEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEE
Confidence 22 22 1211110 011100 0000111
Q ss_pred ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEe
Q 002207 341 IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420 (953)
Q Consensus 341 ~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lE 420 (953)
+..+.++...|+ ....+ ++++...++++|.++++++|+. +++||+++.+.+ ..+. .+.+.+.|+|
T Consensus 659 ~L~~~~Nls~GG-~~~dv----td~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~--------~p~~-~~~~~~~iiE 723 (757)
T 3ln7_A 659 QLRANSNISTGG-DSIDM----TDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLK--------QPAT-PNLTSWGVIE 723 (757)
T ss_dssp ECCSSCCGGGTC-CEEEC----TTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSS--------SCCC-SSTTTCEEEE
T ss_pred EeecccccccCc-cceec----cccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCcc--------cccc-ccCCCeEEEE
Confidence 122344454444 22222 3334445589999999999996 999999862100 0000 0234688999
Q ss_pred ecCCCCCC
Q 002207 421 INLISGME 428 (953)
Q Consensus 421 IN~~PG~t 428 (953)
||..||+.
T Consensus 724 vN~~P~~~ 731 (757)
T 3ln7_A 724 ANFNPMMM 731 (757)
T ss_dssp EESSCCHH
T ss_pred EcCCcchh
Confidence 99999965
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=171.02 Aligned_cols=207 Identities=12% Similarity=0.023 Sum_probs=145.6
Q ss_pred CcCEEEEcCCCCCC---C-chHHHHHHHcCCccEECCCHHHHHHhccH----HHHHHHHHHCCC---CCCCeEEecCCcc
Q 002207 163 NVDIVFPTIHGRFG---E-DGGIQEVLEKYNVPFVGTGSRACRQAFDK----YDASLEMSKQGF---ITVPSFLLQGSEV 231 (953)
Q Consensus 163 ~~D~vf~~lhG~~G---E-dg~iq~lle~~gIpyvGs~~~a~~i~~DK----~~~k~~l~~~Gi---ptp~~~~~~~~~~ 231 (953)
.+|+||+..+.... . ...+-..||.+|+|.+ +++.++..|.|| ..+.++|+++|+ |.++........
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~- 145 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHR- 145 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG-
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChh-
Confidence 68999999866542 1 2455567999999987 679999999999 567788889988 865554443211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+. +...+||+||||..|..|.||.++++.+++...+..... ....+++||||+.++++.|.|++
T Consensus 146 ------~~-----~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~--~~~~~~vQefI~~g~DiRv~VvG--- 209 (309)
T 1i7n_A 146 ------EM-----LTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVAL--TQTYATAEPFIDAKYDIRVQKIG--- 209 (309)
T ss_dssp ------GG-----SSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHH--HTCCEEEEECCCEEEEEEEEEET---
T ss_pred ------hh-----hhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc--cCCeEEEEeecCCCceEEEEEEC---
Confidence 11 123678999999999999999999999987655543222 24568899999877999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+. +++ -+.... .+ +|+.+.. ++ ... |..++++ +++.|.++.+++|--+++.||+
T Consensus 210 -g~--v~a----~~Rr~~--------~g---~wrtN~~-~~-~~e--~~~l~~e----~~~la~~A~~a~gGldi~GVDl 263 (309)
T 1i7n_A 210 -NN--YKA----YMRTSI--------SG---NWKTNTG-SA-MLE--QIAMSDR----YKLWVDACSEMFGGLDICAVKA 263 (309)
T ss_dssp -TE--EEE----EEEESS--------CT---TTSCSCC-CS-SEE--EECCCHH----HHHHHHHHTTGGGCCSEEEEEE
T ss_pred -CE--EEE----EEEEcC--------CC---CCeecCC-cc-eee--ecCCCHH----HHHHHHHHHHHhCCCCEEEEEE
Confidence 32 222 111110 11 2344432 22 222 2245655 4789999999995457999997
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecC--CCCCCCc
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINL--ISGMEQT 430 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~--~PG~t~~ 430 (953)
+. +++|.++|+|||. +||+..+
T Consensus 264 l~-----------------~~~g~~~V~EVN~~~~P~~~~~ 287 (309)
T 1i7n_A 264 VH-----------------GKDGKDYIFEVMDCSMPLIGEH 287 (309)
T ss_dssp EE-----------------ETTSCEEEEEEECTTCCCCSSC
T ss_pred EE-----------------cCCCCEEEEEECCCCCCCccch
Confidence 64 5788899999999 9998743
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-16 Score=173.78 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=145.8
Q ss_pred HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC
Q 002207 653 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732 (953)
Q Consensus 653 q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~ 732 (953)
..+++..|+|..| +..+..+..||..+|++ |+++|||||++ +.+. +.+ .+|+||||..
T Consensus 102 ~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~---l~~~GIptp~~--~~~~---------------~e~-~~PvVVK~~~ 159 (361)
T 2r7k_A 102 DNVENSFLVPMFG-NRRILRWESERSLEGKL---LREAGLRVPKK--YESP---------------EDI-DGTVIVKFPG 159 (361)
T ss_dssp HHHHHTCCSCBBS-CGGGGGTTTCHHHHHHH---HHHTTCCCCCE--ESSG---------------GGC-CSCEEEECSC
T ss_pred HHHHHHcCCCcCC-CHHHHHHhhhHHHHHHH---HHHcCcCCCCE--eCCH---------------HHc-CCCEEEeeCC
Confidence 3445589999988 77888999999999988 99999999975 3321 133 5899999999
Q ss_pred CCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhc
Q 002207 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812 (953)
Q Consensus 733 ~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~ 812 (953)
+++|+||+++++.+|+.+ +++..+.. +.+.... ...+||||||+|.
T Consensus 160 ~a~GkGv~v~~s~ee~~~---a~~~~~~~---~~~~~~~---------~~~viIEEfl~G~------------------- 205 (361)
T 2r7k_A 160 ARGGRGYFIASSTEEFYK---KAEDLKKR---GILTDED---------IANAHIEEYVVGT------------------- 205 (361)
T ss_dssp CCC---EEEESSHHHHHH---HHHHHHHT---TSCCHHH---------HHHCEEEECCCSE-------------------
T ss_pred CCCCCCEEEECCHHHHHH---HHHHHHhc---cccccCC---------CCeEEEEeccceE-------------------
Confidence 999999999999999875 55554321 0000000 1469999999997
Q ss_pred CCCceeEEEEEEEcC--CCCceeeCceEEEe-cCCccccccc--ccc--CCCceeEc---CCCCCCCCHHHHHHHHHHHH
Q 002207 813 GNSRWVEITVGVIGK--CGSMHSLMPSVTVK-ESGDILSLEE--KFQ--GGTGINLT---PPPASIMSTEALDKCKQRIE 882 (953)
Q Consensus 813 g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~-~~~~~~d~~~--Ky~--~g~~~~~~---P~~~~~l~~~~~~~i~~~a~ 882 (953)
|+++.++.. .+....+....++. ...+++.+-. ++. ........ |+. +++++.++++++++
T Consensus 206 ------e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~---l~~~~~~~a~~~a~ 276 (361)
T 2r7k_A 206 ------NFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV---IRESLLPQVFEMGD 276 (361)
T ss_dssp ------EEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC---CCGGGHHHHHHHHH
T ss_pred ------EeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc---CCHHHHHHHHHHHH
Confidence 554222211 11111111111110 0111221100 000 01112223 766 67889999999999
Q ss_pred HHHHHc------CCcceEEEEEEEEcCCCcEEEEeeCCCCCCC-C----CchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 883 LIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-P----STVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 883 ~~~~aL------g~~G~ariDf~v~~~~g~~~viEINt~PGlt-~----~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
++.++| ++.|...+|||++. +|+++|+|||++||=. + .|.+.+..... +|++-.-+.+=|++|+++
T Consensus 277 ~v~~al~~~~~~~~~G~~~vE~fvt~-dg~i~V~EIapR~gGg~~~~~~g~p~~~l~~~~--~~~~g~r~~~e~~~~~~~ 353 (361)
T 2r7k_A 277 KLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSFMNGGPYSFLYNGE--PLSMGQRIAREIKMALQL 353 (361)
T ss_dssp HHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGGTTCCTTHHHHHSS--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccceEEEEEEEcC-CCCEEEEEEcCCCCCCcccccCCCCchheeecC--CCCHHHHHHHHHHHHHHh
Confidence 999999 89999999999985 6899999999988864 1 23333433322 456556666667777753
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=194.67 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=144.9
Q ss_pred cChHHHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHc-------CCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCC
Q 002207 622 HSINEWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAE-------GVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 693 (953)
Q Consensus 622 ~~~~~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~-------gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIp 693 (953)
.+....++.+ +..+|++|+- +++.+..+.... |++..|++..+..++.||..+|++ |+++|||
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg------~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~l---L~~~GIP 503 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD------ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKV---LQKAGFN 503 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE------TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHH---HHHHTCC
T ss_pred CCHHHHHHHHHHhCCCEEEEC------CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHH---HHHCCcC
Confidence 3444555553 3568888753 333221122222 333333444566666699999999 9999999
Q ss_pred ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe----CCcccHHHHHHHHHHHHhhCCCCCccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL----CCAEDLTVYVKALEECLLRIPPNSFSR 769 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v----~~~~eL~~~~~al~~a~~~~~~~~~~~ 769 (953)
||++..+.+.+ +.++.+.+.+ +||+||||..+++|+||.++ .+.+++.. +++.++..
T Consensus 504 vP~~~~~~~~~-------ea~~~~~~~~-g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~---al~~a~~~-------- 564 (757)
T 3ln7_A 504 VPQSVEFTSLE-------KAVASYALFE-NRAVVIKPKSTNYGLGITIFQQGVQNREDFAK---ALEIAFRE-------- 564 (757)
T ss_dssp CCCEEEESCHH-------HHHHGGGGSS-SSCEEEEESSCSTTTTCEECSSCCCCHHHHHH---HHHHHHHH--------
T ss_pred CCCEEEECCHH-------HHHHHHHHhc-CCCEEEEeCCCCCCCCeEEecCCCCCHHHHHH---HHHHHHhc--------
Confidence 99999886532 2222222567 69999999999999999999 67777664 67766654
Q ss_pred ccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCC-----
Q 002207 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----- 844 (953)
Q Consensus 770 ~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~----- 844 (953)
+..+|||+||+|+ |++|.|+++. +++.++..+..
T Consensus 565 -----------~~~vlVEefI~G~-------------------------Ei~v~Vlggk-----vvaai~R~p~~VvGDG 603 (757)
T 3ln7_A 565 -----------DKEVMVEDYLVGT-------------------------EYRFFVLGDE-----TLAVLLRVPANVVGDS 603 (757)
T ss_dssp -----------CSSEEEEECCCSE-------------------------EEEEEEETTE-----EEEEEEECCSEEEGGG
T ss_pred -----------CCcEEEEEcCCCc-------------------------EEEEEEECCE-----EEEEEEEecccccCCC
Confidence 5789999999997 8888888753 22333322110
Q ss_pred -------------c-----------------------------------------ccccccccc-CCCceeEcCCCCCCC
Q 002207 845 -------------D-----------------------------------------ILSLEEKFQ-GGTGINLTPPPASIM 869 (953)
Q Consensus 845 -------------~-----------------------------------------~~d~~~Ky~-~g~~~~~~P~~~~~l 869 (953)
+ ++.+.+... +|... ++
T Consensus 604 ~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~--------dv 675 (757)
T 3ln7_A 604 VHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSI--------DM 675 (757)
T ss_dssp CCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEE--------EC
T ss_pred cccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccce--------ec
Confidence 0 000111111 11111 13
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc-------CCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNV-------DNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~-------~~g~~~viEINt~PGlt~ 920 (953)
++++..+++++|.++++++|+. +++||+++.. +.+.+.|+|||..||+.-
T Consensus 676 td~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~ 732 (757)
T 3ln7_A 676 TDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMM 732 (757)
T ss_dssp TTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCCCeEEEEEcCCcchhh
Confidence 3455678899999999999997 9999999862 235678999999999754
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=169.72 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=145.3
Q ss_pred CcCEEEEcCCCCCC-C---chHHHHHHHcCCccEECCCHHHHHHhccH----HHHHHHHHHCCC---CCCCeEEecCCcc
Q 002207 163 NVDIVFPTIHGRFG-E---DGGIQEVLEKYNVPFVGTGSRACRQAFDK----YDASLEMSKQGF---ITVPSFLLQGSEV 231 (953)
Q Consensus 163 ~~D~vf~~lhG~~G-E---dg~iq~lle~~gIpyvGs~~~a~~i~~DK----~~~k~~l~~~Gi---ptp~~~~~~~~~~ 231 (953)
.+|+||+..+.... + ...+-..||.+|+|.+ +++.++..|.|| ..+.++|+++|+ |.++........
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~~~- 257 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK- 257 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG-
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCchh-
Confidence 68999999866442 1 2455667999999987 679999999999 556778889988 855554443211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+. +...+||+||||..|..|+||.++++.+++...+..... ....++|||||+.++++.|.|++
T Consensus 258 ------~~-----i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~--~~~~~~vQEfI~~g~DIRv~VVG--- 321 (422)
T 1pk8_A 258 ------EM-----LSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVAL--TKTYATAEPFIDAKYDVRVQKIG--- 321 (422)
T ss_dssp ------GC-----CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH--HTSCEEEEECCCEEEEEEEEEET---
T ss_pred ------hh-----hhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhc--cCceEEEEeecCCCceEEEEEEC---
Confidence 11 123678999999999999999999999987765543322 23568899999877999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
++ +++ -+.... .+ +|+.+.. + ....+..++++ ++++|.++.+++|--+++.||+
T Consensus 322 -g~--vva----~~Rr~~--------~g---~WrtNvg-~---g~~e~i~lt~e----~~elA~kAaka~gGldiaGVDl 375 (422)
T 1pk8_A 322 -QN--YKA----YMRTSV--------SG---NWKTNTG-S---AMLEQIAMSDR----YKLWVDTCSEIFGGLDICAVEA 375 (422)
T ss_dssp -TE--EEE----EEEEES--------SS---CSSTTSS-C---EEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEE
T ss_pred -CE--EEE----EEEEcC--------CC---CceeccC-c---eeeeeeCCCHH----HHHHHHHHHHHhCCCCEEEEEE
Confidence 32 222 111110 11 2444432 2 12223346665 4899999999994346999997
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecC--CCCCCCc
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINL--ISGMEQT 430 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~--~PG~t~~ 430 (953)
+. +++|.+||+|||. +|++..+
T Consensus 376 L~-----------------s~dG~~~VlEVN~s~~P~~~g~ 399 (422)
T 1pk8_A 376 LH-----------------GKDGRDHIIEVVGSSMPLIGDH 399 (422)
T ss_dssp EE-----------------ETTSCEEEEEEECTTCCCCTTC
T ss_pred EE-----------------cCCCCEEEEEECCCCCCCccch
Confidence 64 5788899999999 9998743
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-15 Score=162.61 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=143.7
Q ss_pred CCcEEEEecCCCCC---C-ccHHHHHHHHcCCCEeCCChHHHHHhcChH----HHHHHHHHHHHCCC---CccCeEEEeC
Q 002207 634 NQATVFIAVHGGIG---E-DGTLQSLLEAEGVPYTGPGVMASKTCMDKV----ATSLALNHLADLGV---LTINKDVRRK 702 (953)
Q Consensus 634 ~~dvvf~~~hG~~G---E-dg~iq~llE~~gIPy~G~~~~as~l~~DK~----~tk~~~~~l~~~GI---ptp~~~~v~~ 702 (953)
.+|+||+-.+.... . ...+-..||.+|+|.+ +++.+...|.||. .+.++ |+++|+ |.++......
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~---l~~~gi~~~P~~~~~~~~~ 143 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAI---FKTLGGEKFPLIEQTYYPN 143 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHH---HHHHCTTTSCBCCCEEESS
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHH---HHhCCCCCCCCCCEEeeCC
Confidence 47999998876542 2 1355567899999987 5678999999993 44444 788888 8555544422
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
. .+ +.+.+ +||+|+||..+..+.||.++++.++++.+.+++... ..
T Consensus 144 ~-------~~----~~~~~-g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~----------------------~~ 189 (309)
T 1i7n_A 144 H-------RE----MLTLP-TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT----------------------QT 189 (309)
T ss_dssp G-------GG----GSSCC-CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH----------------------TC
T ss_pred h-------hh----hhhcc-CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc----------------------CC
Confidence 1 11 23456 699999999999999999999999988654333221 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.+++||||+.. +++.|.|+|+. +...++...+++| ..... +.....+
T Consensus 190 ~~~vQefI~~g------------------------~DiRv~VvGg~-----v~a~~Rr~~~g~w---rtN~~-~~~~e~~ 236 (309)
T 1i7n_A 190 YATAEPFIDAK------------------------YDIRVQKIGNN-----YKAYMRTSISGNW---KTNTG-SAMLEQI 236 (309)
T ss_dssp CEEEEECCCEE------------------------EEEEEEEETTE-----EEEEEEESSCTTT---SCSCC-CSSEEEE
T ss_pred eEEEEeecCCC------------------------ceEEEEEECCE-----EEEEEEEcCCCCC---eecCC-cceeeec
Confidence 68899999843 59999999875 2223333223333 33332 2222223
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 921 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~~ 921 (953)
|. ++ +.+++|.++.+++|.-+++.||++.+. +|.+||+|||. +||+...
T Consensus 237 ~l-----~~----e~~~la~~A~~a~gGldi~GVDll~~~-~g~~~V~EVN~~~~P~~~~~ 287 (309)
T 1i7n_A 237 AM-----SD----RYKLWVDACSEMFGGLDICAVKAVHGK-DGKDYIFEVMDCSMPLIGEH 287 (309)
T ss_dssp CC-----CH----HHHHHHHHHTTGGGCCSEEEEEEEEET-TSCEEEEEEECTTCCCCSSC
T ss_pred CC-----CH----HHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCEEEEEECCCCCCCccch
Confidence 32 33 468899999999954569999988874 68899999999 9999743
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=167.09 Aligned_cols=206 Identities=12% Similarity=0.047 Sum_probs=144.6
Q ss_pred CcCEEEEcCCCCCC---C-chHHHHHHHcCCccEECCCHHHHHHhccH----HHHHHHHHHCCC---CCCCeEEecCCcc
Q 002207 163 NVDIVFPTIHGRFG---E-DGGIQEVLEKYNVPFVGTGSRACRQAFDK----YDASLEMSKQGF---ITVPSFLLQGSEV 231 (953)
Q Consensus 163 ~~D~vf~~lhG~~G---E-dg~iq~lle~~gIpyvGs~~~a~~i~~DK----~~~k~~l~~~Gi---ptp~~~~~~~~~~ 231 (953)
.+|+||+..+...- + ...+-..||.+|+|.+ +++.++..|.|| ..+.++|+++|+ |.++........
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~- 162 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHK- 162 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSST-
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchh-
Confidence 68999999876321 1 1355567999999987 679999999999 667788899888 855554443211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+. ++..+||+||||..|..|+||.++++.+++...+..... ....+++||||+.++++.|.|++
T Consensus 163 ------~~-----~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~--~~~~~~vQefI~~g~DiRv~VVG--- 226 (344)
T 2p0a_A 163 ------PM-----VTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM--AKTYATTEAFIDSKYDIRIQKIG--- 226 (344)
T ss_dssp ------TC-----CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH--HTCCEEEEECCCEEEEEEEEEET---
T ss_pred ------hh-----hhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc--cCCeEEEEeccCCCccEEEEEEC---
Confidence 11 123678999999999999999999999987655543221 24568899999877999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+. +++. +.... .+ +|+.+.. + ....+..++++ ++++|.++.+++|--+++.||+
T Consensus 227 -g~--vva~----~R~~~--------~g---~wrtN~~--~--~~~e~~~l~~e----~~~la~~Aa~a~gGldi~GVDl 280 (344)
T 2p0a_A 227 -SN--YKAY----MRTSI--------SG---NWKANTG--S--AMLEQVAMTER----YRLWVDSCSEMFGGLDICAVKA 280 (344)
T ss_dssp -TE--EEEE----EEEES--------SS---CSSTTSS--S--EEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEE
T ss_pred -CE--EEEE----EEecC--------CC---CCeecCC--c--eEEEeeCCCHH----HHHHHHHHHHHhCCCCEEEEEE
Confidence 32 2221 11110 11 2344432 2 22223346665 4789999999995457999997
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecC--CCCCCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINL--ISGMEQ 429 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~--~PG~t~ 429 (953)
+. +++|.+||+|||. +|++..
T Consensus 281 l~-----------------~~~G~~~VlEVN~~~~P~~~~ 303 (344)
T 2p0a_A 281 VH-----------------SKDGRDYIIEVMDSSMPLIGE 303 (344)
T ss_dssp EE-----------------ETTSCEEEEEEECTTCCCCGG
T ss_pred EE-----------------cCCCCEEEEEEcCCCCCcccc
Confidence 64 5788899999999 999864
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=165.07 Aligned_cols=187 Identities=13% Similarity=-0.040 Sum_probs=123.3
Q ss_pred HhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC-----CCceeEEE-eCCHHHHH
Q 002207 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA-----GSSIGVTV-AYGVIDSL 275 (953)
Q Consensus 202 i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~-----gsS~GV~~-v~~~~el~ 275 (953)
..+||+.+|++|+++|||+|++..+.+.+. +..+.+ .++||+||||..+ |+|.||.+ +++.+|+.
T Consensus 18 ~~l~k~~~k~ll~~~GIp~p~~~~~~~~~e----a~~~a~-----~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 18 TAMVEYEAKQVLKAYGLPVPEEKLAKTLDE----ALEYAK-----EIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp CEECHHHHHHHHHTTTCCCCCCEEESSHHH----HHHHHH-----HHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHcCcCCCCeEEeCCHHH----HHHHHH-----HhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 468999999999999999999998876432 222222 2678999999999 88999999 79999987
Q ss_pred HHHHHhHhcC-------CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCc
Q 002207 276 KKAKGIILEG-------IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 348 (953)
Q Consensus 276 ~~a~~~~~~~-------~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky 348 (953)
+.+.+++... ..+.+|||+||+|++|++++++++.. ..++++ + +. .. ++++. +
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~---~g~v~~------~-~~-------Gg--~~iE~-~ 148 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQ---FGHAIM------F-GL-------GG--IFVEI-L 148 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETT---TEEEEE------E-EE-------CS--TTHHH-H
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCC---CCcEEE------E-ec-------CC--ceeee-e
Confidence 7766654321 13689999999966999999997531 112221 1 10 11 11221 2
Q ss_pred cCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC
Q 002207 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425 (953)
Q Consensus 349 ~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P 425 (953)
.+ .+....| ++++..+++.+.+.++++++||+|++++|+-.+.+--..+ ..+..+.+++++++||||+.
T Consensus 149 -~d-~~~~~~P--l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l----~~~~~~~~~~~~~lEINPl~ 217 (238)
T 1wr2_A 149 -KD-VTFRLVP--ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKV----SKLVDDLKDYIKEMDLNPVF 217 (238)
T ss_dssp -CC-CEEEESS--CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHH----HHHHHHTTTTEEEEEEEEEE
T ss_pred -cc-eeeecCC--CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH----HHHHHcCCCCeEEEeccCeE
Confidence 12 1334444 9999999999999999999999999999841000000000 00001223349999999864
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=160.28 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=142.6
Q ss_pred CCcEEEEecCCCC-CC---ccHHHHHHHHcCCCEeCCChHHHHHhcCh----HHHHHHHHHHHHCCC---CccCeEEEeC
Q 002207 634 NQATVFIAVHGGI-GE---DGTLQSLLEAEGVPYTGPGVMASKTCMDK----VATSLALNHLADLGV---LTINKDVRRK 702 (953)
Q Consensus 634 ~~dvvf~~~hG~~-GE---dg~iq~llE~~gIPy~G~~~~as~l~~DK----~~tk~~~~~l~~~GI---ptp~~~~v~~ 702 (953)
.+|+||+-.+... .+ ...+-..||.+|+|.+ +++.+...|.|| ..+.++ |+++|+ |.++......
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~---l~~~gi~~~P~~~~t~~~~ 160 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKI---FHSLGPEKFPLVEQTFFPN 160 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHH---HHHHCTTTSCBCCCEEESS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHH---HHHCCCCCCCCCCEEecCc
Confidence 4799999887632 11 1345567899999987 567899999999 445554 788888 8555544422
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
.. + +.+.+ +||+||||..+..+.||.++++.++++.+.+++... ..
T Consensus 161 ~~-------~----~~~~~-g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~----------------------~~ 206 (344)
T 2p0a_A 161 HK-------P----MVTAP-HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA----------------------KT 206 (344)
T ss_dssp ST-------T----CCCCS-SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH----------------------TC
T ss_pred hh-------h----hhhcc-CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc----------------------CC
Confidence 11 1 13356 699999999999999999999999998654443321 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.+++||||+.. +++.|.|+|+. +...++...+++| .... +. ....
T Consensus 207 ~~~vQefI~~g------------------------~DiRv~VVGg~-----vva~~R~~~~g~w---rtN~--~~-~~~e 251 (344)
T 2p0a_A 207 YATTEAFIDSK------------------------YDIRIQKIGSN-----YKAYMRTSISGNW---KANT--GS-AMLE 251 (344)
T ss_dssp CEEEEECCCEE------------------------EEEEEEEETTE-----EEEEEEEESSSCS---STTS--SS-EEEE
T ss_pred eEEEEeccCCC------------------------ccEEEEEECCE-----EEEEEEecCCCCC---eecC--Cc-eEEE
Confidence 68899999843 59999999875 2223333323333 2333 22 2222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTP 920 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~ 920 (953)
+.+ +++ +.+++|.++.+++|.-+++.||++.+. +|.+||+|||. +|++..
T Consensus 252 ~~~---l~~----e~~~la~~Aa~a~gGldi~GVDll~~~-~G~~~VlEVN~~~~P~~~~ 303 (344)
T 2p0a_A 252 QVA---MTE----RYRLWVDSCSEMFGGLDICAVKAVHSK-DGRDYIIEVMDSSMPLIGE 303 (344)
T ss_dssp EEC---CCH----HHHHHHHHHTTGGGCCSEEEEEEEEET-TSCEEEEEEECTTCCCCGG
T ss_pred eeC---CCH----HHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCEEEEEEcCCCCCcccc
Confidence 222 233 468899999999954569999988874 68899999999 999864
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-14 Score=160.19 Aligned_cols=207 Identities=17% Similarity=0.185 Sum_probs=142.8
Q ss_pred CCcEEEEecCCCCC-C---ccHHHHHHHHcCCCEeCCChHHHHHhcChH----HHHHHHHHHHHCCC---CccCeEEEeC
Q 002207 634 NQATVFIAVHGGIG-E---DGTLQSLLEAEGVPYTGPGVMASKTCMDKV----ATSLALNHLADLGV---LTINKDVRRK 702 (953)
Q Consensus 634 ~~dvvf~~~hG~~G-E---dg~iq~llE~~gIPy~G~~~~as~l~~DK~----~tk~~~~~l~~~GI---ptp~~~~v~~ 702 (953)
.+|+||+-.+.... + ...+-..||.+|+|.+ +++.+...|.||. .+-++ |+++|+ |.++......
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~l---l~~~gi~~iP~t~~t~~~~ 255 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRL---HKKLGTEEFPLIDQTFYPN 255 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHH---HHHHCTTTSCBCCCEEESS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHH---HHhCCCCCCCCCceEecCc
Confidence 47999998876542 2 2345567899999987 5678999999993 34444 788888 8555444422
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
.. + +.+.+ +||+||||..+..+.||.++++.++++.+.+++... ..
T Consensus 256 ~~-------~----~i~~~-g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~----------------------~~ 301 (422)
T 1pk8_A 256 HK-------E----MLSST-TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT----------------------KT 301 (422)
T ss_dssp GG-------G----CCCCS-SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH----------------------TS
T ss_pred hh-------h----hhhcc-CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc----------------------Cc
Confidence 11 1 12456 699999999999999999999999988654433221 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.+++||||+.. +++.|.|+|++ +...++....++| ..... +.....+
T Consensus 302 ~~~vQEfI~~g------------------------~DIRv~VVGg~-----vva~~Rr~~~g~W---rtNvg-~g~~e~i 348 (422)
T 1pk8_A 302 YATAEPFIDAK------------------------YDVRVQKIGQN-----YKAYMRTSVSGNW---KTNTG-SAMLEQI 348 (422)
T ss_dssp CEEEEECCCEE------------------------EEEEEEEETTE-----EEEEEEEESSSCS---STTSS-CEEEEEE
T ss_pred eEEEEeecCCC------------------------ceEEEEEECCE-----EEEEEEEcCCCCc---eeccC-ceeeeee
Confidence 68899999843 59999999875 2223333223433 33332 2111223
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 921 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~~ 921 (953)
+ +++ +.+++|.++.++++.-+++.||++.+. +|.+||+|||. +|++...
T Consensus 349 ~-----lt~----e~~elA~kAaka~gGldiaGVDlL~s~-dG~~~VlEVN~s~~P~~~g~ 399 (422)
T 1pk8_A 349 A-----MSD----RYKLWVDTCSEIFGGLDICAVEALHGK-DGRDHIIEVVGSSMPLIGDH 399 (422)
T ss_dssp C-----CCH----HHHHHHHHHTTGGGCCSEEEEEEEEET-TSCEEEEEEECTTCCCCTTC
T ss_pred C-----CCH----HHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCEEEEEECCCCCCCccch
Confidence 3 233 578899999999944469999988874 68899999999 9999654
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=163.86 Aligned_cols=210 Identities=13% Similarity=-0.002 Sum_probs=128.4
Q ss_pred HHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC
Q 002207 656 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735 (953)
Q Consensus 656 lE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gs 735 (953)
||.+|+|..++ ..+...++||...+++ |+++|||||+++. ..+ + ++ +||+||||.++++
T Consensus 79 le~~~~p~~p~-~~~l~~~~dr~~~~~~---l~~~Gip~P~~~~--~ee---------~-----~i-~~PviVKp~~g~g 137 (320)
T 2pbz_A 79 IEKAKARFFGN-RRFLKWETTFELQDKA---LEGAGIPRVEVVE--PED---------A-----KP-DELYFVRIEGPRG 137 (320)
T ss_dssp HHTCCSCCBSC-SSGGGGGSCHHHHHHH---HHHHTCCBCCBCC--SCC---------C-----CS-SCCEEEECC----
T ss_pred HHHcCCCcCCC-HHHHHHHHhHHHHHHH---HHHCCcCCCCeeC--HhH---------c-----Cc-CCcEEEEECCCCC
Confidence 57899997655 5678899999999987 9999999999872 211 1 36 6999999999999
Q ss_pred CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCC
Q 002207 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815 (953)
Q Consensus 736 S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~ 815 (953)
|+|++++++ +|+.. +++.+ ...+||||||+|.
T Consensus 138 gkG~~~v~~-eel~~---~~~~~----------------------~~~~IiEEfI~g~---------------------- 169 (320)
T 2pbz_A 138 GSGHFIVEG-SELEE---RLSTL----------------------EEPYRVERFIPGV---------------------- 169 (320)
T ss_dssp --------C-EECSC---CCC--------------------------CCEEEECCCSC----------------------
T ss_pred CCCEEEECh-HHHHH---HHHhc----------------------CCCEEEEeeeceE----------------------
Confidence 999999999 99863 11110 1468999999997
Q ss_pred ceeEEEEEEEcC--CCCceeeCceEEEecCCccccccccccCCCceeEc---CCCCCCCCHHHHHHHHHHHHHHHHHc--
Q 002207 816 RWVEITVGVIGK--CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT---PPPASIMSTEALDKCKQRIELIANAL-- 888 (953)
Q Consensus 816 ~~~Eitv~vl~~--~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~---P~~~~~l~~~~~~~i~~~a~~~~~aL-- 888 (953)
+++..++.. .+....+....++...++.++....+ .+..+. |+. +++++.+++++++++++++|
T Consensus 170 ---~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~---~~~~~~G~~P~~---~~~~~~~~a~~~a~~i~~~L~~ 240 (320)
T 2pbz_A 170 ---YLYVHFFYSPILERLELLGVDERVLIADGNARWPVKP---LPYTIVGNRAIA---LRESLLPQLYDYGLAFVRTMRE 240 (320)
T ss_dssp ---EEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSC---CCCCEEEEEECE---ECGGGHHHHHHHHHHHHHHHHH
T ss_pred ---ecceeEEeccccCceeEEEecceEEEECCeeecccCC---CceeeecCCCCc---cCHHHHHHHHHHHHHHHHHHHh
Confidence 444333221 12222222222332223333221000 011122 655 57788899999999999999
Q ss_pred ----CCcceEEEEEEEEcCCCcEEEEeeCCCCCC-----CCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 889 ----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-----TPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 889 ----g~~G~ariDf~v~~~~g~~~viEINt~PGl-----t~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
|+.|...|| ++. +|++||+|||++||= +|.|. +.-+-+|.+-.-+.+=|++|+++
T Consensus 241 l~~~g~~G~~~vE--~~~-dg~~~v~EIapR~~GGt~~~~~y~~-----~~~~~~~~~g~r~~~e~~~~~~~ 304 (320)
T 2pbz_A 241 LEPPGVIGPFALH--FAY-DGSFKAIGIASRIDGGSNADHWYSE-----LYWGERLSMGRRIARELRLAEEE 304 (320)
T ss_dssp HSTTCCCSEEEEE--EEC-SSSCEEEEEESSBCSGGGSCCCCHH-----HHSSSCCCHHHHHHHHHHHHHTT
T ss_pred hccCCceeeEEEE--EcC-CCcEEEEEecCCCCCCCCccCCcee-----eeecCCCCHHHHHHHHHHHHHHc
Confidence 999999999 453 689999999998544 45442 22233466666677777888753
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=162.68 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=124.2
Q ss_pred HHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC-----CCCcceEE-eCCc
Q 002207 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD-----GCSTGVAR-LCCA 745 (953)
Q Consensus 672 ~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~-----gsS~GV~~-v~~~ 745 (953)
+..|||+.+|++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||..+ ++|.||.+ +++.
T Consensus 17 ~~~l~k~~~k~l---l~~~GIp~p~~~~~~~~~--------ea~~~a~~l-g~PvvvKp~~~~~~~r~~~gGv~~~v~~~ 84 (238)
T 1wr2_A 17 RTAMVEYEAKQV---LKAYGLPVPEEKLAKTLD--------EALEYAKEI-GYPVVLKLMSPQILHKSDAKVVMLNIKNE 84 (238)
T ss_dssp CCEECHHHHHHH---HHTTTCCCCCCEEESSHH--------HHHHHHHHH-CSSEEEEEECTTCCCHHHHTCEEEEECSH
T ss_pred cCCCCHHHHHHH---HHHcCcCCCCeEEeCCHH--------HHHHHHHHh-CCCEEEEEccCCCCcCCccCCEEEeCCCH
Confidence 347899999999 999999999999886532 233455678 69999999999 88999999 7999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEE
Q 002207 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI 825 (953)
Q Consensus 746 ~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl 825 (953)
+++..+ ++.++.+. . ...+......+|||+||++. +|++|+++
T Consensus 85 ~el~~a---~~~~~~~~------~----~~~~~~~~~~vlVEe~i~~g------------------------~E~~v~v~ 127 (238)
T 1wr2_A 85 EELKKK---WEEIHENA------K----KYRPDAEILGVLVAPMLKPG------------------------REVIIGVT 127 (238)
T ss_dssp HHHHHH---HHHHHHHH------H----HHCTTCCCCEEEEEECCCCC------------------------EEEEEEEE
T ss_pred HHHHHH---HHHHHHhh------h----hhCCCCccceEEEEECCCCC------------------------eEEEEEEE
Confidence 988864 44443320 0 00111124789999999943 49999999
Q ss_pred cCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE-------
Q 002207 826 GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA------- 898 (953)
Q Consensus 826 ~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf------- 898 (953)
++.. ..|.+.+. .+++ +++. + ...+..+.| ++++..+++.+.+++++.++|++|++|+|+
T Consensus 128 ~d~~----~g~v~~~~-~Gg~-~iE~-~-~d~~~~~~P-----l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l 194 (238)
T 1wr2_A 128 EDPQ----FGHAIMFG-LGGI-FVEI-L-KDVTFRLVP-----ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDML 194 (238)
T ss_dssp EETT----TEEEEEEE-ECST-THHH-H-CCCEEEESS-----CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHH
T ss_pred eCCC----CCcEEEEe-cCCc-eeee-e-cceeeecCC-----CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 8752 11222222 2332 2442 2 223333333 578999999999999999999999999984
Q ss_pred ------EEEcCCCc-EEEEeeCCCC
Q 002207 899 ------FVNVDNGE-VLIIEVNTVP 916 (953)
Q Consensus 899 ------~v~~~~g~-~~viEINt~P 916 (953)
+.+ .++ ++++||||+.
T Consensus 195 ~~l~~~~~~--~~~~~~~lEINPl~ 217 (238)
T 1wr2_A 195 LKVSKLVDD--LKDYIKEMDLNPVF 217 (238)
T ss_dssp HHHHHHHHH--TTTTEEEEEEEEEE
T ss_pred HHHHHHHHc--CCCCeEEEeccCeE
Confidence 232 345 9999999854
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-12 Score=134.44 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=141.6
Q ss_pred CcEEEEecCCC-CCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccC--Cch-
Q 002207 635 QATVFIAVHGG-IGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK--TPI- 710 (953)
Q Consensus 635 ~dvvf~~~hG~-~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~--~~~- 710 (953)
+|+ ++.+|+. +--| .+...+++.+. |+=++..+..++.||..+.++ |+++|||||++.+++...... ...
T Consensus 58 ~d~-lisf~s~gfpl~-kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~i---L~~~gIPtP~t~~~~rd~~~~~~~~~~ 131 (330)
T 3t7a_A 58 CDC-LISFHSKGFPLD-KAVAYAKLRNP-FVINDLNMQYLIQDRREVYSI---LQAEGILLPRYAILNRDPNNPKECNLI 131 (330)
T ss_dssp CSE-EEECCCTTCCHH-HHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHH---HHHTTCCCCCEEEECCBTTBGGGSSEE
T ss_pred CCE-EEEeccCCCcHH-HHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHH---HHHcCCCCCCEEEEeCCCCCcccccee
Confidence 454 4445553 3223 66788898885 566778889999999999998 999999999999987632100 000
Q ss_pred --hhHHHHHHhhcCCCcEEEecCCCC-----------CCcc----eEEeCCcccHHHHHHHHHHHHhhCCCCCccccccc
Q 002207 711 --VDIWHELTSKLQCKTLCVKPARDG-----------CSTG----VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 773 (953)
Q Consensus 711 --~~~~~~~~~~lg~~PlvVKP~~~g-----------sS~G----V~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~ 773 (953)
.+.++.....+ ++|+|+||..+. .+.| +.++.+.++... |. ..
T Consensus 132 e~~d~i~~~g~~l-~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~------------~~-~~------ 191 (330)
T 3t7a_A 132 EGEDHVEVNGEVF-QKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYS------------PE-SN------ 191 (330)
T ss_dssp ECSSEEEETTEEE-ESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEE------------SC-CS------
T ss_pred ccchhhhhccccc-cCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccC------------hh-hh------
Confidence 00011012356 599999999874 2223 345666655321 00 00
Q ss_pred ccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC--Cccccccc
Q 002207 774 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES--GDILSLEE 851 (953)
Q Consensus 774 ~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~--~~~~d~~~ 851 (953)
...+..+|+||||+.. | +++.|-|+|+. +...++-+.. .+ +|..
T Consensus 192 ----vr~~~~~i~QEFI~~~-------------------G----~DIRv~vVG~~-----vv~Am~R~sp~~~G--~~r~ 237 (330)
T 3t7a_A 192 ----VRKTGSYIYEEFMPTD-------------------G----TDVKVYTVGPD-----YAHAEARKSPALDG--KVER 237 (330)
T ss_dssp ----CCSSSCEEEEECCCCS-------------------S----EEEEEEEESTT-----CEEEEEEECTTSSC--BCCB
T ss_pred ----hccCCcEEEEeccCCC-------------------C----ceEEEEEECCE-----EEEEEEEeCCCCCC--cEEE
Confidence 0126789999999732 1 49999999876 3333333321 12 3455
Q ss_pred cccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHH
Q 002207 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926 (953)
Q Consensus 852 Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~ 926 (953)
..++|.....+ . +++ +.+++|.++++++|+. ++.||++.+ ++..||+|||..|-.....-++.
T Consensus 238 N~~gG~~~~~v--~---Lt~----eek~iA~kaa~a~G~~-v~GVDlLrs--~~~~~V~EVNg~~fvk~~~~yyd 300 (330)
T 3t7a_A 238 DSEGKEVRYPV--I---LNA----REKLIAWKVCLAFKQT-VCGFDLLRA--NGQSYVCDVNGFSFVKNSMKYYD 300 (330)
T ss_dssp CTTSCBCCEEC--C---CCH----HHHHHHHHHHHHTTBS-EEEEEEEEE--TTEEEEEEEEESCCCSSCHHHHH
T ss_pred cCCCCceeeee--c---CCH----HHHHHHHHHHHHhCCc-eEEEEEEEE--CCccEEEEeCCCccccCchhHHH
Confidence 55555543333 2 344 5588999999999986 899999887 46799999999998887653333
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-14 Score=134.72 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=77.4
Q ss_pred HHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHH
Q 002207 199 ACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLK 276 (953)
Q Consensus 199 a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~ 276 (953)
++.+++||..++++|+++|||+|+++ .+.+.+ ++..+.+ .++||+||||..+++|.||.++++.+|+.+
T Consensus 2 a~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~----~~~~~~~-----~~~~P~vvKp~~~~~~~gv~~v~~~~el~~ 72 (108)
T 2cqy_A 2 SSGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAE----EAVRIAR-----EIGYPVMIKASAGGGGKGMRIAWDDEETRD 72 (108)
T ss_dssp CCCCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHH----HHHHHHH-----HHCSSEEEEETTSCCTTTCEEESSHHHHHH
T ss_pred chhhhcCHHHHHHHHHHcCCCCCCCcccccCCHH----HHHHHHH-----hcCCCEEEEECCCCCCccEEEeCCHHHHHH
Confidence 35679999999999999999999987 554432 2223322 257899999999999999999999999876
Q ss_pred HHHHhHh---cCC-CCcEEEeccCCCCeEEEEEEE
Q 002207 277 KAKGIIL---EGI-DDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 277 ~a~~~~~---~~~-~~~vlVEefI~Gg~E~tv~Vl 307 (953)
...+++. ..+ +..+|||+||+|.+|++|.|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 73 GFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred HHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 6655432 112 468999999998559998876
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-12 Score=134.26 Aligned_cols=238 Identities=13% Similarity=0.026 Sum_probs=151.3
Q ss_pred CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh-----hhh
Q 002207 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES-----ELS 237 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~-----~~~ 237 (953)
-+|+.+.-..-+|..| .+...+++.+. |+-++..+..++.||..+.++|+++|||||++..+........ +..
T Consensus 57 ~~d~lisf~s~gfpl~-kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~ 134 (330)
T 3t7a_A 57 LCDCLISFHSKGFPLD-KAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGE 134 (330)
T ss_dssp CCSEEEECCCTTCCHH-HHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECS
T ss_pred cCCEEEEeccCCCcHH-HHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccc
Confidence 5888888876667655 45578888775 6678899999999999999999999999999999876431000 000
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-----------CceeE----EEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-CCeE
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-----------SSIGV----TVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-GGSE 301 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-----------sS~GV----~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-Gg~E 301 (953)
..++ ..-..+++|+|+||..|. .+.|. .++.|.+..... .... +.+..+|+||||+ +|++
T Consensus 135 d~i~-~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~-~~~v--r~~~~~i~QEFI~~~G~D 210 (330)
T 3t7a_A 135 DHVE-VNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESNV--RKTGSYIYEEFMPTDGTD 210 (330)
T ss_dssp SEEE-ETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEES-CCSC--CSSSCEEEEECCCCSSEE
T ss_pred hhhh-hccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccCh-hhhh--ccCCcEEEEeccCCCCce
Confidence 0010 001235689999999985 23333 455554321100 0011 2467899999995 3499
Q ss_pred EEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh
Q 002207 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 302 ~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL 381 (953)
+.|-|+| . ..+. . +..... . .++ +|++....++ .. .|..+++++ +++|.++++++
T Consensus 211 IRv~vVG----~--~vv~---A-m~R~sp----~--~~G--~~r~N~~gG~-~~--~~v~Lt~ee----k~iA~kaa~a~ 265 (330)
T 3t7a_A 211 VKVYTVG----P--DYAH---A-EARKSP----A--LDG--KVERDSEGKE-VR--YPVILNARE----KLIAWKVCLAF 265 (330)
T ss_dssp EEEEEES----T--TCEE---E-EEEECT----T--SSC--BCCBCTTSCB-CC--EECCCCHHH----HHHHHHHHHHT
T ss_pred EEEEEEC----C--EEEE---E-EEEeCC----C--CCC--cEEEcCCCCc-ee--eeecCCHHH----HHHHHHHHHHh
Confidence 9999995 2 1221 1 111110 0 011 3566665333 32 345688776 89999999999
Q ss_pred CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcch-HHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF-LFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 382 g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~-~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|+. ++.||++. + ++.+||+|||..|-.....- |=.+ ..+|+.++-.++..
T Consensus 266 G~~-v~GVDlLr-----------------s-~~~~~V~EVNg~~fvk~~~~yyd~~--------a~il~~~~~~~~~~ 316 (330)
T 3t7a_A 266 KQT-VCGFDLLR-----------------A-NGQSYVCDVNGFSFVKNSMKYYDDC--------AKILGNIVMRELAP 316 (330)
T ss_dssp TBS-EEEEEEEE-----------------E-TTEEEEEEEEESCCCSSCHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred CCc-eEEEEEEE-----------------E-CCccEEEEeCCCccccCchhHHHHH--------HHHHHHHHHHHhCc
Confidence 986 99999863 3 45689999999888776432 3222 24566666555543
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-14 Score=129.39 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc
Q 002207 670 ASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747 (953)
Q Consensus 670 as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~e 747 (953)
++++|+||..++++ |+++|||+|+++ .+.+.+ .+.++.+.+ +||+||||..+++|.||.++++.++
T Consensus 2 a~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~~~--------~~~~~~~~~-~~P~vvKp~~~~~~~gv~~v~~~~e 69 (108)
T 2cqy_A 2 SSGSSGDKIESKLL---AKKAEVNTIPGFDGVVKDAE--------EAVRIAREI-GYPVMIKASAGGGGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCCSTTC---CCSSCCCCCSCCCSCBSSHH--------HHHHHHHHH-CSSEEEEETTSCCTTTCEEESSHHH
T ss_pred chhhhcCHHHHHHH---HHHcCCCCCCCcccccCCHH--------HHHHHHHhc-CCCEEEEECCCCCCccEEEeCCHHH
Confidence 45789999999999 999999999986 554321 233445678 6999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 748 LTVYVKALEECL-LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 748 L~~~~~al~~a~-~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+..+.+.+.... ... ....+|||+||+|.
T Consensus 70 l~~~~~~~~~~~~~~~-----------------~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSF-----------------GDDRLLIEKFIDNP 99 (108)
T ss_dssp HHHHHHHHHHHHHHHT-----------------SSCCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHhhc-----------------CCCcEEEeeccCCC
Confidence 886433322110 110 03679999999996
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-09 Score=121.94 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCc-EEEeeCCC----CCceeEEEeCCHHHHHHHH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTRA----GSSIGVTVAYGVIDSLKKA 278 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P-vvVKP~~~----gsS~GV~~v~~~~el~~~a 278 (953)
.+++.+|++|+++|||+|++..+.+.+. +.++.+ .++|| +||||... |.+.||.++++.+|+.+.+
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~aa~-----~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 3 LHEYQAKQLFARYGLPAPVGYACTTPRE----AEEAAS-----KIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHH-----HHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcCCCCeeEECCHHH----HHHHHH-----HhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 4789999999999999999998876543 223332 25789 99999986 4456999999999988877
Q ss_pred HHhHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 279 KGIILEG-----------IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 279 ~~~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
.+++... ..+.+|||+|+++++|++++++.+.
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~ 116 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDR 116 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEET
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEec
Confidence 7765310 1357999999995599999999864
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-09 Score=119.70 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-cEEEeeC--CCCCcee---------EEEeCCH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPT--RAGSSIG---------VTVAYGV 271 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~--~~gsS~G---------V~~v~~~ 271 (953)
.+++.+|++|+++|||+|++..+.+.++ +.++.++ ++| |+||||. .||.++| |.++++.
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~~e----a~~~a~~-----lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 3 LQEYQSKKLMSDNGVKVQRFFVADTANE----ALEAAKR-----LNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHHH-----HTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHH----HHHHHHH-----cCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 4688999999999999999998876543 2233322 578 8999994 6665654 9999999
Q ss_pred HHHHHHHHHhHhcC--------C---CCcEEEeccCCCCeEEEEEEEEeC
Q 002207 272 IDSLKKAKGIILEG--------I---DDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 272 ~el~~~a~~~~~~~--------~---~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+|+.+.+.+++... . .+.+|||+|++.++|+.++++.+.
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEcc
Confidence 99888877665321 0 246999999996699999999864
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=111.87 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=75.0
Q ss_pred cChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EEEecCCC----CCCcceEEeCCcccHH
Q 002207 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LCVKPARD----GCSTGVARLCCAEDLT 749 (953)
Q Consensus 675 ~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~P-lvVKP~~~----gsS~GV~~v~~~~eL~ 749 (953)
.+++.+|++ |+++|||||++..+.+.+ .+.++.+++ +|| +||||... |.+.||.++++.+++.
T Consensus 3 l~E~~aK~l---L~~~GIpvp~~~~~~s~e--------ea~~aa~~l-G~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~ 70 (388)
T 2nu8_B 3 LHEYQAKQL---FARYGLPAPVGYACTTPR--------EAEEAASKI-GAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIR 70 (388)
T ss_dssp CCHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-CSSCEEEEECCSSSCTTTTTCEEEECSHHHHH
T ss_pred CCHHHHHHH---HHHCCcCCCCeeEECCHH--------HHHHHHHHh-CCCeEEEEEecCCCCCCccCCEEEECCHHHHH
Confidence 378999999 999999999999886533 233455678 699 99999986 4456999999888887
Q ss_pred HHHHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 750 VYVKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 750 ~~~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+ +++..+... + ...++ .+....+.++||+|+++. +|+.++++.+.
T Consensus 71 ~---a~~~~~~~~----~~t~q~g---~~g~~~~~vlVEe~v~~~------------------------~E~~v~v~~D~ 116 (388)
T 2nu8_B 71 A---FAENWLGKR----LVTYQTD---ANGQPVNQILVEAATDIA------------------------KELYLGAVVDR 116 (388)
T ss_dssp H---HHHHHTTSE----ECCTTSC---TTCEECCCEEEEECCCEE------------------------EEEEEEEEEET
T ss_pred H---HHHHHhhhh----hhccccC---CCCcccceEEEEEccccC------------------------CcEEEEEEEec
Confidence 5 455443210 0 00000 000113579999999843 49999999875
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.9e-08 Score=110.12 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCC-cEEEecC--CCCCC---------cceEEeC
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPA--RDGCS---------TGVARLC 743 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~-PlvVKP~--~~gsS---------~GV~~v~ 743 (953)
+++.+|++ |+++|||||++..+.+.+ .+.++.+++ +| |+||||. .+|.+ -||.+++
T Consensus 4 ~E~~aK~l---L~~~GIpvp~~~~~~s~~--------ea~~~a~~l-g~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~ 71 (395)
T 2fp4_B 4 QEYQSKKL---MSDNGVKVQRFFVADTAN--------EALEAAKRL-NAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTK 71 (395)
T ss_dssp CHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-TCSSEEEEECCSSSCGGGCEETTSCBCSEEEES
T ss_pred CHHHHHHH---HHHCCcCCCCeEEECCHH--------HHHHHHHHc-CCCcEEEEEeeccCCCccCccccCCcCCEEEEC
Confidence 67889998 999999999999886533 234455678 69 8999995 45544 3599998
Q ss_pred CcccHHHHHHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEE
Q 002207 744 CAEDLTVYVKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITV 822 (953)
Q Consensus 744 ~~~eL~~~~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv 822 (953)
+.+++.+ +++..+.. .+ .+..+ .+..+.+.++||+|++.. +|+.+
T Consensus 72 s~~e~~~---a~~~~l~~----~~~t~q~g---~~g~~~~~vlVEe~v~~~------------------------~E~~v 117 (395)
T 2fp4_B 72 DPEVVGQ---LAKQMIGY----NLATKQTP---KEGVKVNKVMVAEALDIS------------------------RETYL 117 (395)
T ss_dssp CHHHHHH---HHHTTTTS----EEECTTSC---TTCEECCCEEEEECCCCS------------------------EEEEE
T ss_pred CHHHHHH---HHHHHhhc----chhhhccC---CCCCccceEEEEEccCCc------------------------eeEEE
Confidence 8888775 44433221 00 00000 000113579999999843 49999
Q ss_pred EEEcCC
Q 002207 823 GVIGKC 828 (953)
Q Consensus 823 ~vl~~~ 828 (953)
+++.+.
T Consensus 118 ~i~~D~ 123 (395)
T 2fp4_B 118 AILMDR 123 (395)
T ss_dssp EEEEET
T ss_pred EEEEcc
Confidence 999876
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-07 Score=103.83 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC----CCceeEEEeCCHHHHHHHHHH
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA----GSSIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~----gsS~GV~~v~~~~el~~~a~~ 280 (953)
+-+.+|++|+++|||||++..+.+.++ +.+..++ ++||+||||... |.+.||.++++.+|+.+.+.+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~aa~~-----lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~ 74 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKVAYTPEE----AKRIAEE-----FGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQA 74 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHHH-----HTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHH----HHHHHHH-----cCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHH
Confidence 567899999999999999999877543 2222222 568999999983 234599999999999888877
Q ss_pred hHhcC----CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 281 IILEG----IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++... ..+.++||+|+++++|++++++.+..
T Consensus 75 ~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~ 109 (397)
T 3ufx_B 75 ILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRA 109 (397)
T ss_dssp HTTCEETTEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred hhhhhccCCccceEEEEEeecCCeeEEEEEEecCC
Confidence 65421 24689999999955999999998753
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=93.88 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC----CCCcceEEeCCcccHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD----GCSTGVARLCCAEDLTVY 751 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~----gsS~GV~~v~~~~eL~~~ 751 (953)
+-+.+|++ |+++|||||++..+.+.+ ...++.+++ +||+||||... |.+.||.++++.+++.+
T Consensus 4 ~E~~aK~l---L~~~GIpvp~~~~~~s~e--------ea~~aa~~l-G~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~- 70 (397)
T 3ufx_B 4 HEYQAKEI---LARYGVPVPPGKVAYTPE--------EAKRIAEEF-GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYE- 70 (397)
T ss_dssp CHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-TSCEEEEECCSSSCTTTTTCEEEESSHHHHHH-
T ss_pred CHHHHHHH---HHHCCCCCCCeEEECCHH--------HHHHHHHHc-CCCEEEEEccccCCCCccceEEEeCCHHHHHH-
Confidence 45678888 999999999999887643 233456778 59999999873 23459999988888775
Q ss_pred HHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
++++.+... + +....+.++||+|+++. +|+.++++.+.
T Consensus 71 --a~~~~~~~~----~---------~g~~~~~vlVEe~v~~g------------------------~El~vgv~~D~ 108 (397)
T 3ufx_B 71 --KAQAILGMN----I---------KGLTVKKVLVAEAVDIA------------------------KEYYAGLILDR 108 (397)
T ss_dssp --HHHHHTTCE----E---------TTEECCCEEEEECCCEE------------------------EEEEEEEEEET
T ss_pred --HHHHhhhhh----c---------cCCccceEEEEEeecCC------------------------eeEEEEEEecC
Confidence 555544210 0 00114679999999842 49999999875
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-05 Score=86.18 Aligned_cols=175 Identities=11% Similarity=0.116 Sum_probs=91.3
Q ss_pred CCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-------CCe--EEEEEEEEeCCCCccccE
Q 002207 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-------GGS--EFTAIVLDVGSGFDCHPV 318 (953)
Q Consensus 248 ~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-------Gg~--E~tv~Vl~~~~g~~~~~v 318 (953)
...++|+||..++.|.||.++++.+++.+.... ....++||+||+ +|+ ++++-|+-.+ .....
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~-----~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts---~l~vy 217 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDN-----QGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN---QYNIY 217 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHH-----HTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT---TCCEE
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhc-----cCCcEEEEecccCceeecCCCceeEEEEEEEEcC---CCEEE
Confidence 345899999999999999999999997755432 245789999995 445 5555555321 00111
Q ss_pred EecceEEEEeccCcc--cccc---CCcccccc----cCccC---CCceE------EE---cCCCCCHHHHHHHHHHHHHH
Q 002207 319 VLLPTEVELQFQGSV--DVRE---KDAIFNYR----RKYLP---TQQVA------YH---TPPRFPIVVINSIREGASLL 377 (953)
Q Consensus 319 ~l~~~ei~~~~~~~~--~~~~---~~~~~dy~----~Ky~~---~~~~~------~~---~Pa~l~~~~~~~i~~~a~~~ 377 (953)
+.--+-+.+....+. +..+ .-..+... ..|.. +.... +. ........+..+|+++...+
T Consensus 218 ~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~ 297 (380)
T 3tig_A 218 LYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVC 297 (380)
T ss_dssp ECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHH
T ss_pred EEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 111111111110000 0000 00000000 01110 00000 00 01111235566777777766
Q ss_pred HHH----h-------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHH
Q 002207 378 FQR----L-------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 446 (953)
Q Consensus 378 ~~a----L-------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ 446 (953)
+.+ + +|-.+.++||++ |+++++|+||||+.|++.+. + .++
T Consensus 298 l~a~~~~i~~~~~~~~~FEl~G~D~li-----------------d~~l~~wllEVN~~P~~~q~-~-----------i~~ 348 (380)
T 3tig_A 298 LSCLEPAISTKYLPYHSFQLFGFDFMV-----------------DKNLKVWLIEVNGAPACAQK-L-----------YAE 348 (380)
T ss_dssp HHHHHHHHCCTTSSSEECEEEEEEEEE-----------------BTTCCEEEEEEESSCCCCTT-T-----------HHH
T ss_pred HHHHHHHhhhcccCCceEEEEeEEEEE-----------------cCCCcEEEEEEeCCCCccHH-h-----------HHH
Confidence 664 2 234688999886 67899999999999998753 2 346
Q ss_pred HHHHHHHHHhhhC
Q 002207 447 ILRTIIGHACSRF 459 (953)
Q Consensus 447 ll~~li~~a~~r~ 459 (953)
|++.+++.|+.-+
T Consensus 349 l~~~~~~iavdp~ 361 (380)
T 3tig_A 349 LCKGIVDLAISSV 361 (380)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHhcccc
Confidence 7778888877764
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00013 Score=81.54 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHH----c-------CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHH
Q 002207 871 TEALDKCKQRIELIANA----L-------QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQ 939 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~a----L-------g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~ 939 (953)
..+..+|++++..++.+ + +|..+..+||++|. +.++++||||+.|++... .. .+
T Consensus 284 ~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~-~l~~wllEVN~~P~~~q~-------------~i-~~ 348 (380)
T 3tig_A 284 NSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDK-NLKVWLIEVNGAPACAQK-------------LY-AE 348 (380)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBT-TCCEEEEEEESSCCCCTT-------------TH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcC-CCcEEEEEEeCCCCccHH-------------hH-HH
Confidence 35666777776666644 2 24467899999995 799999999999999742 34 47
Q ss_pred HHHHHHHHHhhcc
Q 002207 940 FFRKVLDLGSERF 952 (953)
Q Consensus 940 l~~~li~~a~~r~ 952 (953)
|++.++++|+.-+
T Consensus 349 l~~~~~~iavdp~ 361 (380)
T 3tig_A 349 LCKGIVDLAISSV 361 (380)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHhcccc
Confidence 8888888887644
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.13 Score=58.59 Aligned_cols=100 Identities=13% Similarity=-0.045 Sum_probs=66.7
Q ss_pred HHHHHHHHHHCCC---C---CCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeCC--CCC--ceeEEEeCCHHHH
Q 002207 206 KYDASLEMSKQGF---I---TVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPTR--AGS--SIGVTVAYGVIDS 274 (953)
Q Consensus 206 K~~~k~~l~~~Gi---p---tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~--~gs--S~GV~~v~~~~el 274 (953)
-+..|.+|.++++ | .+++..+..... .+++.+..+ .++ ||+|||+.. ++- .=||.++.+.+|+
T Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~eA~~~a~-----~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev 81 (425)
T 3mwd_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTD-WARLLQDHP-----WLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGV 81 (425)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCC-HHHHHHHCG-----GGGTSCEEEEECSSCSCTTTTTCCEEEECHHHH
T ss_pred HHHHHHHHHHhccccCCccCCcceEEeCCCCC-HHHHHHHHH-----HhCCCCEEEEeccccCCCCcCCeEEEECCHHHH
Confidence 4678999999999 4 223666655432 223333322 245 799999965 222 2388888899998
Q ss_pred HHHHHHhHhcC--------CCCcEEEeccCCC--CeEEEEEEEEeCC
Q 002207 275 LKKAKGIILEG--------IDDRVVVELFLEG--GSEFTAIVLDVGS 311 (953)
Q Consensus 275 ~~~a~~~~~~~--------~~~~vlVEefI~G--g~E~tv~Vl~~~~ 311 (953)
.+++.+++... .-..++||+++.. ++|+-+++..|..
T Consensus 82 ~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 82 KSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp HHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCC
Confidence 88877765321 1246899999963 3899999998643
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.2 Score=61.42 Aligned_cols=100 Identities=13% Similarity=-0.061 Sum_probs=67.8
Q ss_pred HHHHHHHHHHCCCC------CCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeCCCCC----ceeEEEeCCHHHH
Q 002207 206 KYDASLEMSKQGFI------TVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPTRAGS----SIGVTVAYGVIDS 274 (953)
Q Consensus 206 K~~~k~~l~~~Gip------tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~~gs----S~GV~~v~~~~el 274 (953)
-+..|.+|.++++| ++++..+...+.. +++.+..+ .++ +|+|||+...-+ .=||.++.+.+|+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~-~eA~~aa~-----~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa 81 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDW-ARLLQDHP-----WLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGV 81 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCH-HHHHHHCT-----HHHHSCEEEEECSSCSCTTTTTCCEEEECHHHH
T ss_pred HHHHHHHHHHhCccccccccCCceEEeCCCCCH-HHHHHHHH-----HhCCCCEEEEecccccCCCcCCeEEEECCHHHH
Confidence 47789999999998 5577777665332 22222221 133 799999965322 2378888899999
Q ss_pred HHHHHHhHhcCC--------CCcEEEeccCCC--CeEEEEEEEEeCC
Q 002207 275 LKKAKGIILEGI--------DDRVVVELFLEG--GSEFTAIVLDVGS 311 (953)
Q Consensus 275 ~~~a~~~~~~~~--------~~~vlVEefI~G--g~E~tv~Vl~~~~ 311 (953)
.+++.+++.... -..+|||+++.. ++|+-++++.|..
T Consensus 82 ~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 82 KSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp HHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCC
Confidence 888877653211 145899999953 3899999998643
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=1.8 Score=49.16 Aligned_cols=64 Identities=11% Similarity=-0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCC---C---ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC--CC--CCcceEEeCCccc
Q 002207 678 VATSLALNHLADLGV---L---TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR--DG--CSTGVARLCCAED 747 (953)
Q Consensus 678 ~~tk~~~~~l~~~GI---p---tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~--~g--sS~GV~~v~~~~e 747 (953)
+..|.+ |.++|+ | .+++..++..+ + .+...+..+.+++||+|||+-. ++ -.-||..+.+.++
T Consensus 9 y~~K~l---l~~~~~~~~~~~~~~~~~~~~~~~----~-~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~ee 80 (425)
T 3mwd_A 9 QTGKEL---LYKFICTTSAIQNRFKYARVTPDT----D-WARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDG 80 (425)
T ss_dssp HHHHHH---HHHHCCCSSCBCSTTCCEEECTTC----C-HHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHH
T ss_pred HHHHHH---HHHhccccCCccCCcceEEeCCCC----C-HHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHH
Confidence 456777 899999 4 33466665542 1 1233445678855999999965 22 2348888766555
Q ss_pred HH
Q 002207 748 LT 749 (953)
Q Consensus 748 L~ 749 (953)
..
T Consensus 81 v~ 82 (425)
T 3mwd_A 81 VK 82 (425)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 953 | ||||
| d1ehia1 | 132 | c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA | 1e-23 | |
| d1ehia1 | 132 | c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA | 4e-17 | |
| d1e4ea1 | 130 | c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA | 6e-23 | |
| d1e4ea1 | 130 | c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA | 4e-15 | |
| d1iowa1 | 96 | c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Es | 1e-15 | |
| d1iowa1 | 96 | c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Es | 1e-11 | |
| d1iowa1 | 96 | c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Es | 0.002 | |
| d1ehia2 | 228 | d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V | 8e-11 | |
| d1ehia2 | 228 | d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V | 2e-08 | |
| d1iowa2 | 210 | d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain | 5e-06 | |
| d1iowa2 | 210 | d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain | 2e-04 | |
| d1e4ea2 | 211 | d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V | 2e-05 |
| >d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 95.2 bits (236), Expect = 1e-23
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLL-VRCYYIDRN---LNAYAISSAQVYSN 134
RV LI GG S+E +S SA++ + I+ + + I +N L+ + +
Sbjct: 3 RVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALED 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D ++++ A A + DI FP +HG GEDG +Q + + + P+VG
Sbjct: 63 EQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVG 122
Query: 195 TGSRACRQAF 204
R +F
Sbjct: 123 APLRGHAVSF 132
|
| >d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 76.7 bits (188), Expect = 4e-17
Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 53/181 (29%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG++SE VS S N + ++A E+ +A + D +SS
Sbjct: 4 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA--------QNGFFLDTESSK 55
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ I A+E ++ + ++ +D + + FD
Sbjct: 56 K----------------------ILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFD 93
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
I F VHG +GEDGTLQ L + PY G +
Sbjct: 94 I-----------------------FFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAV 130
Query: 674 C 674
Sbjct: 131 S 131
|
| >d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Enterococcus faecium [TaxId: 1352]
Score = 93.4 bits (231), Expect = 6e-23
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++V ++ GG S E +S+ SA + +I + I ++
Sbjct: 3 IKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENEN 62
Query: 138 DFDFKLESLAQGFGSL-SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
+ L + G L + E+ +VD+ F +HG+ GEDG IQ + E +PFVG
Sbjct: 63 CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCD 122
Query: 197 SRAC 200
++
Sbjct: 123 IQSS 126
|
| >d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Enterococcus faecium [TaxId: 1352]
Score = 70.6 bits (172), Expect = 4e-15
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 56/182 (30%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG + E VS+ S + E +
Sbjct: 5 VAILFGGCSEEHDVSVKSAIEIA-ANINKEKYEPLYI-------------------GITK 44
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
VW + E +A + PD+ ++ ++ D
Sbjct: 45 SGVWKMCEKPCAEWENENCYSA---VLSPDKKMHGLLVKKNHEYEINH----------VD 91
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ F A+HG GEDG++Q L E G+P+ G + +S
Sbjct: 92 V-----------------------AFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAI 128
Query: 674 CM 675
CM
Sbjct: 129 CM 130
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 70.8 bits (173), Expect = 1e-15
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 34/127 (26%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS +VL ++ +
Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD----------------- 46
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 47 -----------------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89
Query: 199 ACRQAFD 205
A + D
Sbjct: 90 ASALSMD 96
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 59.3 bits (143), Expect = 1e-11
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 604 KKHSWFTGFDIADELPMRHSINE--WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGV 661
+ G E +L VFIA+HG GEDGTLQ +LE G+
Sbjct: 22 SGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81
Query: 662 PYTGPGVMASKTCMD 676
PYTG GVMAS MD
Sbjct: 82 PYTGSGVMASALSMD 96
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 36.2 bits (83), Expect = 0.002
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQ 520
+ V+ GG ++ER+VSL SG V L+
Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLR 31
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 60.8 bits (146), Expect = 8e-11
Identities = 31/255 (12%), Positives = 67/255 (26%), Gaps = 34/255 (13%)
Query: 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIG 264
DK ++ G ++ N + V VK GSS+G
Sbjct: 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDK-----IVAELGNIVFVKAANQGSSVG 55
Query: 265 VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTE 324
++ + + + + G E V+
Sbjct: 56 ISRVTNAEEYTEALSDSFQYDYKVLIEE--AVNGARELEVGVIGNDQPLVSEIGAHTVPN 113
Query: 325 VELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLC 384
D ++Y K++ V + P + V +++ A ++ L L
Sbjct: 114 Q----------GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLR 163
Query: 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444
AR+D + + N + G S + ++
Sbjct: 164 GEARMDFLLDEN-----------------NVPYLGEPNTLPGFTNMSLFKRLWDYSDINN 206
Query: 445 SNILRTIIGHACSRF 459
+ ++ +I + F
Sbjct: 207 AKLVDMLIDYGFEDF 221
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E+ VGVIG + S + + TV G + + + + K
Sbjct: 88 ARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTK 147
Query: 877 CKQRIEL-IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
+++ L L L G +R+D F+ +N + E NT+PG T L +
Sbjct: 148 EVKQMALDAYKVLNLRGEARMD-FLLDENNVPYLGEPNTLPGFTN-MSLFKRLWDYSDIN 205
Query: 936 YPHQFFRKVLDLGSERF 952
+ ++D G E F
Sbjct: 206 NA-KLVDMLIDYGFEDF 221
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 884 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
L +G+ RID ++ +G+ ++E NT PGMT +++ A
Sbjct: 148 AWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAA 191
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 17/114 (14%)
Query: 342 FNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 401
F + + Y P +++ + LG + RID
Sbjct: 113 FYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD----- 167
Query: 402 SSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
G + N GM S + A + G S S ++ I+ A
Sbjct: 168 ------------GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 209
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+S E + ++ ++ I L G +R+D F+ DNG +++ EVNT+PG T +
Sbjct: 133 LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFTSYSRYPRMM 191
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 953 | |||
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 100.0 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.97 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.97 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.96 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.96 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.96 | |
| d1e4ea1 | 130 | D-alanine:D-lactate ligase VanA, N-domain {Enteroc | 99.94 | |
| d1e4ea1 | 130 | D-alanine:D-lactate ligase VanA, N-domain {Enteroc | 99.93 | |
| d1ehia1 | 132 | D-alanine:D-lactate ligase VanA, N-domain {Leucono | 99.92 | |
| d1ehia1 | 132 | D-alanine:D-lactate ligase VanA, N-domain {Leucono | 99.91 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 99.91 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.89 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.88 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 99.88 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.86 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 99.86 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.86 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 99.85 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.85 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.84 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 99.84 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 99.83 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.83 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 99.83 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.82 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.81 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.81 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 99.8 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.79 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.78 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.76 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.74 | |
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.74 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.74 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.73 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.73 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.72 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.71 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 98.65 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 98.37 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.32 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 98.23 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.42 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 97.08 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 97.06 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 97.04 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 96.5 | |
| d2pbza2 | 213 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 96.37 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 96.19 | |
| d1ulza2 | 114 | Biotin carboxylase (BC), N-terminal domain {Aquife | 93.98 | |
| d2pbza2 | 213 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 93.46 | |
| d2j9ga2 | 114 | Biotin carboxylase (BC), N-terminal domain {Escher | 92.56 | |
| d1uc8a1 | 88 | Lysine biosynthesis enzyme LysX, N-terminal domain | 90.3 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 87.44 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 85.65 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 80.32 |
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=100.00 E-value=2.8e-33 Score=294.00 Aligned_cols=221 Identities=17% Similarity=0.228 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
||..||++|+++|||||++..+...+.....+....+ .++||+||||..+++|.||+++++.+|+..+..++.
T Consensus 1 dK~~~k~~l~~~gi~tp~~~~~~~~~~~~~~~~~~~~-----~~g~P~VvKP~~g~~s~GV~~~~~~~el~~~~~~~~-- 73 (228)
T d1ehia2 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVA-----ELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSF-- 73 (228)
T ss_dssp SHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHH-----HHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHcCCCCCCEEEEchhhcChHHHHHHHH-----HhCCCEEEEEeccCCCccceeccccchhhhhhhhhc--
Confidence 8999999999999999999999876543333333332 268899999999999999999999999887766654
Q ss_pred CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCH
Q 002207 285 GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364 (953)
Q Consensus 285 ~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~ 364 (953)
.+...+++|+|+.|++|+++.+++.+ .+++....+..+.. ......+++|..||..+....+..|+.+++
T Consensus 74 ~~~~~~liee~i~g~~e~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 143 (228)
T d1ehia2 74 QYDYKVLIEEAVNGARELEVGVIGND-----QPLVSEIGAHTVPN-----QGSGDGWYDYNNKFVDNSAVHFQIPAQLSP 143 (228)
T ss_dssp TTCSCEEEEECCCCSCEEEEEEEESS-----SCEEEEEEEEECTT-----SSSSSCCCCHHHHTTCCTTCEEESSCCCCH
T ss_pred ccccccccceEEeccceEEEEEeeCC-----Ccceeeeeeeeccc-----cccccceeeeeccccccccccccchhhhhH
Confidence 35678999999998889999998632 23333333333211 111456899999999877677889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 365 ~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
++.+.+++.+.+++++||++|++||||++ |++|++||+|||++||||++|++|+++++.|++|
T Consensus 144 ~~~~~i~~~~~~~~~~lg~~~~~~iD~~~-----------------d~~g~~~~lEvN~~Pg~~~~s~~~~~~~~~G~~~ 206 (228)
T d1ehia2 144 EVTKEVKQMALDAYKVLNLRGEARMDFLL-----------------DENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINN 206 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCH
T ss_pred HHHHHHHHHHHHHHhhhhcCCeeeEEEEE-----------------cCCCcEEEEEecCCCCCCcccHHHHHHHHhCCCH
Confidence 99999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhC
Q 002207 445 SNILRTIIGHACSRF 459 (953)
Q Consensus 445 ~~ll~~li~~a~~r~ 459 (953)
.+|+..||+.|++|+
T Consensus 207 ~~li~~ii~~~~~~~ 221 (228)
T d1ehia2 207 AKLVDMLIDYGFEDF 221 (228)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999885
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.97 E-value=7e-31 Score=275.55 Aligned_cols=217 Identities=25% Similarity=0.307 Sum_probs=177.3
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..||++ |+++|||||++..++..+... +.++++.+.+ +||+||||.++++|.||+++++.+||.. ++
T Consensus 1 dK~~~k~~---l~~~gi~tp~~~~~~~~~~~~----~~~~~~~~~~-g~P~VvKP~~g~~s~GV~~~~~~~el~~---~~ 69 (228)
T d1ehia2 1 DKALTKEL---LTVNGIRNTKYIVVDPESANN----WSWDKIVAEL-GNIVFVKAANQGSSVGISRVTNAEEYTE---AL 69 (228)
T ss_dssp SHHHHHHH---HHTTTCCCCCEEEECTTGGGG----CCHHHHHHHH-CSCEEEEESSCCTTTTEEEECSHHHHHH---HH
T ss_pred CHHHHHHH---HHHcCCCCCCEEEEchhhcCh----HHHHHHHHHh-CCCEEEEEeccCCCccceeccccchhhh---hh
Confidence 89999999 999999999999998765332 2355666788 6999999999999999999999999885 67
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+.+..+ ...+++|+|+.|. +|++++++++.+......
T Consensus 70 ~~~~~~-------------------~~~~liee~i~g~------------------------~e~~~~~~~~~~~~~~~~ 106 (228)
T d1ehia2 70 SDSFQY-------------------DYKVLIEEAVNGA------------------------RELEVGVIGNDQPLVSEI 106 (228)
T ss_dssp HHHTTT-------------------CSCEEEEECCCCS------------------------CEEEEEEEESSSCEEEEE
T ss_pred hhhccc-------------------ccccccceEEecc------------------------ceEEEEEeeCCCcceeee
Confidence 766544 5789999999995 399999988765544333
Q ss_pred ceEEEe---cCCccccccccccCCCcee-EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEe
Q 002207 836 PSVTVK---ESGDILSLEEKFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 836 p~~~i~---~~~~~~d~~~Ky~~g~~~~-~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viE 911 (953)
+...+. ....++++..||..+.... ..|+. +++++.+++++++.+++++||++|++||||+++. +|++||||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~lg~~~~~~iD~~~d~-~g~~~~lE 182 (228)
T d1ehia2 107 GAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ---LSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE-NNVPYLGE 182 (228)
T ss_dssp EEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC---CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEE
T ss_pred eeeeccccccccceeeeeccccccccccccchhh---hhHHHHHHHHHHHHHHHhhhhcCCeeeEEEEEcC-CCcEEEEE
Confidence 333322 2345889999998766554 44544 6899999999999999999999999999999985 79999999
Q ss_pred eCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 912 INt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
||++||||+.|.+++++.+. |..| .+|+..||+.|++|+
T Consensus 183 vN~~Pg~~~~s~~~~~~~~~-G~~~-~~li~~ii~~~~~~~ 221 (228)
T d1ehia2 183 PNTLPGFTNMSLFKRLWDYS-DINN-AKLVDMLIDYGFEDF 221 (228)
T ss_dssp EESSCCCSTTCGGGTGGGGG-TCCH-HHHHHHHHHHHHHHH
T ss_pred ecCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHHHH
Confidence 99999999999888888765 4444 799999999999885
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.97 E-value=7.9e-30 Score=264.22 Aligned_cols=211 Identities=20% Similarity=0.257 Sum_probs=167.8
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
||+.||.+++++|||||++..+.+.+... ...++||+||||+++|||+||++|++.+|+..+...++
T Consensus 1 DK~~~~~~~~~~Gi~tP~~~~~~~~~~~~-----------~~~~~fP~viKP~~gg~s~Gv~~v~~~~el~~~~~~~~-- 67 (211)
T d1e4ea2 1 DKSLTYIVAKNAGIATPAFWVINKDDRPV-----------AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESAR-- 67 (211)
T ss_dssp SHHHHHHHHHHTTCBCCCEEEECTTCCCC-----------GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHT--
T ss_pred CHHHHHHHHHHCCCCCCCeEEECchhHHH-----------HHhcCCCEEEeeccccCcchhccccccccchhhccccc--
Confidence 89999999999999999999997644211 12478999999999999999999999999877666554
Q ss_pred CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCH
Q 002207 285 GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364 (953)
Q Consensus 285 ~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~ 364 (953)
.+...+++|+|+.| +++++.+++... ..+...+....... +. ...+..+...+. .....+.+|+.+++
T Consensus 68 ~~~~~~~~e~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~-~~~~~~~~p~~~~~ 135 (211)
T d1e4ea2 68 QYDSKILIEQAVSG-CEVGCAVLGNSA----ALVVGEVDQIRLQY-GI-----FRIHQEVEPEKG-SENAVITVPADLSA 135 (211)
T ss_dssp TTCSSEEEEECCCS-EEEEEEEEEETT----CCEECCCEEEEESS-SC-----CCGGGSSSGGGC-CSSEEECSSCSSCH
T ss_pred cccccccccccccc-ccceeeccCCCc----ceeeeeceeecccc-ch-----hhhhhhhhhccc-ccceeeeccccccH
Confidence 35678999999997 999999997432 23333333332211 00 011111222222 22356778999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 365 ~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+..++++++|.+++++||+.|+++|||++ +++|++||+|||++|||+++|++|.++++.|++|
T Consensus 136 ~~~~~i~~~a~~~~~~lg~~g~~~id~~~-----------------~~~g~~~viEiN~~pg~~~~s~~~~~~~~~G~~~ 198 (211)
T d1e4ea2 136 EERGRIQETVKKIYKTLGCRGLARVDMFL-----------------QDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISL 198 (211)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCH
T ss_pred hhhhhhHHHHHHHHHhhccCCeeEEEEEE-----------------cCCCCEEEEEEeCCCCCCCccHHHHHHHHcCCCH
Confidence 99999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 002207 445 SNILRTIIGHACS 457 (953)
Q Consensus 445 ~~ll~~li~~a~~ 457 (953)
.+|++.||+.|++
T Consensus 199 ~~li~~iv~~al~ 211 (211)
T d1e4ea2 199 PELIDRLIVLALK 211 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999974
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.96 E-value=8.5e-30 Score=263.74 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=161.8
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccch---hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
|+.||++|+++|||||++..+.+.+... +...... ..++||+||||..+++|.||.+|++.+++.......+
T Consensus 1 K~~tk~~~~~~Giptp~~~~~~~~~~~~~~~~~~~~~~-----~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~ 75 (210)
T d1iowa2 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-----SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF 75 (210)
T ss_dssp HHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCTHHHHHH-----HTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCeEEEechhhcccchHHHHHHH-----HhcCCCEEEeeccccCceecccccchhhhhHHHHHhh
Confidence 8999999999999999999986543211 1111111 2378999999999999999999999999877666543
Q ss_pred hcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCC
Q 002207 283 LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362 (953)
Q Consensus 283 ~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l 362 (953)
.++..++||+|++| +|++|.++++.. ... +.+.+ ...++.....+.... .....|...
T Consensus 76 --~~~~~vlve~~i~g-~e~~~~v~~~~~--------~~~--~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~ 133 (210)
T d1iowa2 76 --QHDEEVLIEKWLSG-PEFTVAILGEEI--------LPS--IRIQP--------SGTFYDYEAKFLSDE-TQYFCPAGL 133 (210)
T ss_dssp --TTCSEEEEEECCCC-CEEEEEEETTEE--------CCC--EEEEC--------SSSSSCHHHHHTCSC-CEEESSCCC
T ss_pred --ccCccccccccccC-ceeEEEeecCcc--------cce--eEEec--------ccceeeecccccccc-ccccccccc
Confidence 46789999999998 999999984211 111 11111 223333333332222 456678889
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCC
Q 002207 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 442 (953)
Q Consensus 363 ~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~ 442 (953)
++....++++.+.+++++++++|++||||++ |++|++||+|||++|||+++|++|.++.++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~g~~~vdf~~-----------------d~~g~~~~lEiN~~pg~~~~s~~~~~~~~~Gi 196 (210)
T d1iowa2 134 EASQEANLQALVLKAWTTLGCKGWGRIDVML-----------------DSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 196 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSEEEEEEEE-----------------CTTSCEEEEEEESSCCCSTTCHHHHHHHHTTC
T ss_pred ccccchhHHHHHHHHHHHhCCCCceEEEEEE-----------------CCCCCEEEEEEeCCCCCCCccHHHHHHHHhCC
Confidence 9999999999999999999999999999986 67899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 002207 443 SHSNILRTIIGHA 455 (953)
Q Consensus 443 s~~~ll~~li~~a 455 (953)
+|.+|+.+||+.|
T Consensus 197 ~~~~li~~ii~~A 209 (210)
T d1iowa2 197 SFSQLVVRILELA 209 (210)
T ss_dssp CHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhc
Confidence 9999999999864
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.96 E-value=1.3e-27 Score=247.27 Aligned_cols=208 Identities=23% Similarity=0.322 Sum_probs=163.2
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..||.+ ++++|||||++..+++.+.. ..+++ +||+||||+++|||.||++|++.+||.. ++
T Consensus 1 DK~~~~~~---~~~~Gi~tP~~~~~~~~~~~----------~~~~~-~fP~viKP~~gg~s~Gv~~v~~~~el~~---~~ 63 (211)
T d1e4ea2 1 DKSLTYIV---AKNAGIATPAFWVINKDDRP----------VAATF-TYPVFVKPARSGSSFGVKKVNSADELDY---AI 63 (211)
T ss_dssp SHHHHHHH---HHHTTCBCCCEEEECTTCCC----------CGGGS-CSCEEEEESSCCTTTTCEEECSGGGHHH---HH
T ss_pred CHHHHHHH---HHHCCCCCCCeEEECchhHH----------HHHhc-CCCEEEeeccccCcchhccccccccchh---hc
Confidence 89999999 99999999999999765421 13577 6999999999999999999999999985 67
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+.++.. ...+++|+|++|+ ++++.++++........
T Consensus 64 ~~~~~~-------------------~~~~~~e~~~~~~-------------------------~~~~~~~~~~~~~~~~~ 99 (211)
T d1e4ea2 64 ESARQY-------------------DSKILIEQAVSGC-------------------------EVGCAVLGNSAALVVGE 99 (211)
T ss_dssp HHHTTT-------------------CSSEEEEECCCSE-------------------------EEEEEEEEETTCCEECC
T ss_pred cccccc-------------------ccccccccccccc-------------------------cceeeccCCCcceeeee
Confidence 766544 5679999999997 99999998765544333
Q ss_pred ceEEEecCC---ccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEee
Q 002207 836 PSVTVKESG---DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912 (953)
Q Consensus 836 p~~~i~~~~---~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEI 912 (953)
......... ..+.+...+..+......|+. ++++..+++++++++++++||+.|+++|||+++. +|++||+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~i~~~a~~~~~~lg~~g~~~id~~~~~-~g~~~viEi 175 (211)
T d1e4ea2 100 VDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD---LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD-NGRIVLNEV 175 (211)
T ss_dssp CEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS---SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT-TCCEEEEEE
T ss_pred ceeeccccchhhhhhhhhhcccccceeeecccc---ccHhhhhhhHHHHHHHHHhhccCCeeEEEEEEcC-CCCEEEEEE
Confidence 222222111 111222222333445566766 5889999999999999999999999999999985 799999999
Q ss_pred CCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 913 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 913 Nt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
|++|||++.|.++++|.+.+ ..|| +|++.||++|++
T Consensus 176 N~~pg~~~~s~~~~~~~~~G-~~~~-~li~~iv~~al~ 211 (211)
T d1e4ea2 176 NTLPGFTSYSRYPRMMAAAG-ISLP-ELIDRLIVLALK 211 (211)
T ss_dssp ESSCCCSTTCHHHHHHHHTT-CCHH-HHHHHHHHHHHC
T ss_pred eCCCCCCCccHHHHHHHHcC-CCHH-HHHHHHHHHHcC
Confidence 99999999998888877664 4554 999999999985
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.96 E-value=5.5e-28 Score=249.99 Aligned_cols=209 Identities=23% Similarity=0.369 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~ 756 (953)
|..||++ |+++|||||+|..+++.++..... +......+.+ +||+||||..+++|.||.++++.++|.. +++
T Consensus 1 K~~tk~~---~~~~Giptp~~~~~~~~~~~~~~~-~~~~~~~~~l-~~P~vvKP~~g~~s~Gv~~v~~~~el~~---~~~ 72 (210)
T d1iowa2 1 KLRSKLL---WQGAGLPVAPWVALTRAEFEKGLS-DKQLAEISAL-GLPVIVKPSREGSSVGMSKVVAENALQD---ALR 72 (210)
T ss_dssp HHHHHHH---HHHTTCCBCCEEEEEHHHHHHCCC-THHHHHHHTT-CSSEEEEETTCCTTTTCEEESSGGGHHH---HHH
T ss_pred CHHHHHH---HHHcCCCCCCeEEEechhhcccch-HHHHHHHHhc-CCCEEEeeccccCceecccccchhhhhH---HHH
Confidence 7899999 999999999999997654322111 2223345678 6999999999999999999999999986 565
Q ss_pred HHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc
Q 002207 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836 (953)
Q Consensus 757 ~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p 836 (953)
..+.. +..+++|+|++|+ |++|.++++. ..+
T Consensus 73 ~~~~~-------------------~~~vlve~~i~g~-------------------------e~~~~v~~~~-----~~~ 103 (210)
T d1iowa2 73 LAFQH-------------------DEEVLIEKWLSGP-------------------------EFTVAILGEE-----ILP 103 (210)
T ss_dssp HHTTT-------------------CSEEEEEECCCCC-------------------------EEEEEEETTE-----ECC
T ss_pred Hhhcc-------------------CccccccccccCc-------------------------eeEEEeecCc-----ccc
Confidence 55433 6789999999997 9999998764 233
Q ss_pred eEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCC
Q 002207 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916 (953)
Q Consensus 837 ~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~P 916 (953)
.+.+.+...++..+..+.........+.. .+....+++++++.+++++++++|++||||+++. +|++||+|||++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~vdf~~d~-~g~~~~lEiN~~p 179 (210)
T d1iowa2 104 SIRIQPSGTFYDYEAKFLSDETQYFCPAG---LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSP 179 (210)
T ss_dssp CEEEECSSSSSCHHHHHTCSCCEEESSCC---CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-TSCEEEEEEESSC
T ss_pred eeEEecccceeeecccccccccccccccc---cccccchhHHHHHHHHHHHhCCCCceEEEEEECC-CCCEEEEEEeCCC
Confidence 34444445555544444333334444444 5789999999999999999999999999999985 7999999999999
Q ss_pred CCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 917 GMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 917 Glt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
||++.|.++.+|.++ |..| .+|+.++|+.|
T Consensus 180 g~~~~s~~~~~~~~~-Gi~~-~~li~~ii~~A 209 (210)
T d1iowa2 180 GMTSHSLVPMAARQA-GMSF-SQLVVRILELA 209 (210)
T ss_dssp CCSTTCHHHHHHHHT-TCCH-HHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHh-CCCH-HHHHHHHHHhc
Confidence 999999888888765 4556 48999999865
|
| >d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.94 E-value=2.7e-27 Score=225.64 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=94.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC-cchh
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG-SLSE 155 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (953)
||||+|||||.|+|||||+.||++|+++|++.+|+|++++|+++|.|+..+...............+........ ....
T Consensus 2 K~kV~vl~GG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T d1e4ea1 2 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKK 81 (130)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEE
T ss_pred CcEEEEEeCCCchhhHHHHHHHHHHHHhhcccceeEEEEEecCCCcEEecccchhhhhcccccceeecCCcccccccccc
Confidence 689999999999999999999999999999999999999999999998754322111111111111110000000 0000
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhc
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAF 204 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~ 204 (953)
.......++|+|||++||.+||||++|++||.+||||+||++.++++||
T Consensus 82 ~~~~~~~~~DvvF~~lHG~~GEDG~iQglle~~~iPy~Gsgv~aSai~M 130 (130)
T d1e4ea1 82 NHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICM 130 (130)
T ss_dssp TTEEEEEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHH
T ss_pred cccccccccCEEEEeccCCCccchHHHHHHHHcCCCccCCCHHHHHhhC
Confidence 0000123699999999999999999999999999999999999999998
|
| >d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.93 E-value=1.6e-26 Score=220.13 Aligned_cols=130 Identities=25% Similarity=0.395 Sum_probs=90.6
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.|+||+|||||.|+||||||+||++|+.+|+. ++|+|+||+|+++|.|+........ .. ......
T Consensus 1 ~K~kV~vl~GG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~g~w~~~~~~~~~-~~--~~~~~~----------- 65 (130)
T d1e4ea1 1 NRIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITKSGVWKMCEKPCAE-WE--NENCYS----------- 65 (130)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEESCCCTT-CC--CTTCEE-----------
T ss_pred CCcEEEEEeCCCchhhHHHHHHHHHHHHhhcc-cceeEEEEEecCCCcEEecccchhh-hh--cccccc-----------
Confidence 47899999999999999999999999999975 8999999999998777643221000 00 000000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
..+.+.. .........+ . ......+|+|||++||.+|||
T Consensus 66 --------~~~~~~~-------------------~~~~~~~~~~----~----------~~~~~~~DvvF~~lHG~~GED 104 (130)
T d1e4ea1 66 --------AVLSPDK-------------------KMHGLLVKKN----H----------EYEINHVDVAFSALHGKSGED 104 (130)
T ss_dssp --------EEECSCT-------------------TTCEEEEEET----T----------EEEEEECSEEEECCCSTTTTS
T ss_pred --------eeecCCc-------------------cccccccccc----c----------cccccccCEEEEeccCCCccc
Confidence 0000000 0000000000 0 001234799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhc
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCM 675 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~ 675 (953)
|+||++||.+|||||||++++|++||
T Consensus 105 G~iQglle~~~iPy~Gsgv~aSai~M 130 (130)
T d1e4ea1 105 GSIQGLFELSGIPFVGCDIQSSAICM 130 (130)
T ss_dssp SHHHHHHHHHTCCBSSCCHHHHHHHH
T ss_pred hHHHHHHHHcCCCccCCCHHHHHhhC
Confidence 99999999999999999999999998
|
| >d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.92 E-value=5.4e-26 Score=217.07 Aligned_cols=128 Identities=26% Similarity=0.359 Sum_probs=91.6
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcC-CCEEEEEEEecCCceeeecccccccCCCCCccccc---cccccccCc
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGD-DLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKL---ESLAQGFGS 152 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~-g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 152 (953)
|+||+|||||.|+|||||+.||++|+++|++. .|+|++++|+++|.|+..+................ .........
T Consensus 1 Kk~Iavl~GG~S~EheVSl~Sa~~v~~~L~~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T d1ehia1 1 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPL 80 (132)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTT
T ss_pred CCEEEEEeCcCcchhHHHHHHHHHHHHhhhccCceeEEEEEEcCCceEEcccchhhhhhccccccccccccccccccccc
Confidence 46999999999999999999999999999986 59999999999999976433211110000000000 000000000
Q ss_pred chhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhc
Q 002207 153 LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAF 204 (953)
Q Consensus 153 ~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~ 204 (953)
..........++|+|||++||.+||||++|++||.+||||+||++.++++|+
T Consensus 81 ~~~~~~~~~~~~Dvvf~~lHG~~GEDG~iQglle~~~iPy~G~~~~aSAlaF 132 (132)
T d1ehia1 81 ARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSF 132 (132)
T ss_dssp CTTGGGGTTCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHH
T ss_pred cchhhhhhccCCCEEEEccCCCCccchHHHHHHHHcCCCccCCCHHHHHhcC
Confidence 0000011234799999999999999999999999999999999999999985
|
| >d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-alanine:D-lactate ligase VanA, N-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.91 E-value=1.1e-25 Score=214.80 Aligned_cols=132 Identities=23% Similarity=0.362 Sum_probs=88.5
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchh
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 570 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 570 (953)
|+||+|+|||.|+||||||+||++|+++|+...+|+|+||+|+++|.|+..... ...+.. .+..
T Consensus 1 Kk~Iavl~GG~S~EheVSl~Sa~~v~~~L~~~~~y~v~~i~i~k~g~~~~~~~~---------~~~~~~------~~~~- 64 (132)
T d1ehia1 1 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESS---------KKILAL------EDEQ- 64 (132)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHH---------HHHHTT------CCHH-
T ss_pred CCEEEEEeCcCcchhHHHHHHHHHHHHhhhccCceeEEEEEEcCCceEEcccch---------hhhhhc------cccc-
Confidence 689999999999999999999999999998656899999999998655432100 000000 0000
Q ss_pred hHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCcc
Q 002207 571 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDG 650 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg 650 (953)
...+....... ....+. . + .. ......+|+|||++||.+||||
T Consensus 65 ~~~~~~~~~~~----------------------~~~~~~-~----------~--~~--~~~~~~~Dvvf~~lHG~~GEDG 107 (132)
T d1ehia1 65 PIVDAFMKTVD----------------------ASDPLA-R----------I--HA--LKSAGDFDIFFPVVHGNLGEDG 107 (132)
T ss_dssp HHHHHHHTSCC----------------------TTCTTC-T----------T--GG--GGTTCCCSEEEEECCSTTTSSS
T ss_pred ccccccccccc----------------------cccccc-c----------h--hh--hhhccCCCEEEEccCCCCccch
Confidence 00000000000 000000 0 0 00 0123357999999999999999
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhc
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCM 675 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~ 675 (953)
+||++||.+|||||||++++|+++.
T Consensus 108 ~iQglle~~~iPy~G~~~~aSAlaF 132 (132)
T d1ehia1 108 TLQGLFKLLDKPYVGAPLRGHAVSF 132 (132)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCCHHHHHhcC
Confidence 9999999999999999999999873
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.91 E-value=2.6e-25 Score=199.18 Aligned_cols=95 Identities=31% Similarity=0.438 Sum_probs=82.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|||||.|+||+||+.||++|+++|++.||+|+.++++.+..+
T Consensus 2 ~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~--------------------------------- 48 (96)
T d1iowa1 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT--------------------------------- 48 (96)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGG---------------------------------
T ss_pred CceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccch---------------------------------
Confidence 35899999999999999999999999999999999987654332100
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhcc
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFD 205 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~D 205 (953)
.....++|+|||++||.+||||.+|++||.+||||+||++.++++|||
T Consensus 49 -~~~~~~~d~vF~~lHG~~GEdG~iQ~~le~l~IPytGs~~~asal~~D 96 (96)
T d1iowa1 49 -QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 (96)
T ss_dssp -GTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred -hhhccCceeEEEeccCcchhccHHHHHHHHcCCCccCCCHHHHHHhcC
Confidence 001237999999999999999999999999999999999999999998
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.9e-22 Score=208.46 Aligned_cols=203 Identities=19% Similarity=0.174 Sum_probs=147.2
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
.|..||++|+++|||||+|..+++.+. +.+++ +.++||+||||+.++||.||.+|++.+++.+++.+++..
T Consensus 1 sK~~~K~~l~~~gIptp~~~~~~~~~e----~~~~~-----~~ig~PvVvKP~~~~gs~Gv~~v~~~~el~~a~~~~~~~ 71 (220)
T d1vkza3 1 SKVYAKRFMKKYGIRTARFEVAETPEE----LREKI-----KKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIG 71 (220)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHH-----TTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCCCCeEEeCCHHH----HHHHH-----HHcCCCEEEEeccccccccceeeccHHHHHHHhhhhccc
Confidence 489999999999999999998876542 33333 347899999999999999999999999988777765432
Q ss_pred ----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC
Q 002207 285 ----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360 (953)
Q Consensus 285 ----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa 360 (953)
..++.+|||+|+.| +|+++.++.++ .....++..+. ....+++..++.... .....|.
T Consensus 72 ~~~~~~~~~vliEe~i~g-~e~~v~~~~~~----~~~~~l~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~ 133 (220)
T d1vkza3 72 ELIKGVKGPVVIDEFLAG-NELSAMAVVNG----RNFVILPFVRD------------YKRLMDGDRGPNTGG-MGSWGPV 133 (220)
T ss_dssp SSSTTCCSCEEEEECCCS-EEEEEEEEEET----TEEEECCCCEE------------CCEEETTTEEEECSC-SEEEECC
T ss_pred cccccccceEeeeccccc-ccceeEEEEeC----CEEEEcccccc------------ccccccccccccccc-ccccccC
Confidence 24568999999998 99999998642 22333444322 234555655655444 3455666
Q ss_pred CCCHHHHHHHHHHHHHHHHH-----hCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHH
Q 002207 361 RFPIVVINSIREGASLLFQR-----LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 361 ~l~~~~~~~i~~~a~~~~~a-----Lg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~ 435 (953)
..+.......++....+.++ ++++|+.++||++ + ++.+||||||++||.+.++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~d~~~-----------------~-~~gp~viEiN~R~G~~~~~~--- 192 (220)
T d1vkza3 134 EIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLML-----------------H-DGDPYILEYNVRLGDPETEV--- 192 (220)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEE-----------------E-TTEEEEEEEESSCCTTHHHH---
T ss_pred CccchhhHHHHHHHHHHHHHHhhhhhhhhccceeEEEe-----------------e-CCCEEEEEEECCCCCCccee---
Confidence 67776666666665555543 3467999999986 4 44599999999999754332
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhh
Q 002207 436 QASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 436 ~a~~~G~s~~~ll~~li~~a~~r 458 (953)
..++...+|++.+++.|+.+
T Consensus 193 ---~~~~~~~dl~~~~l~~a~g~ 212 (220)
T d1vkza3 193 ---IVTLNPEGFVNAVLEGYRGG 212 (220)
T ss_dssp ---HHHHCHHHHHHHHHHHHHTS
T ss_pred ---eeecccccHHHHHHHHHcCC
Confidence 23445569999999999876
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.3e-21 Score=203.44 Aligned_cols=208 Identities=15% Similarity=0.153 Sum_probs=146.9
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
.|.+||++ |+++|||||+|..+++.+ .+.++.+++ +||+||||+++++|.||.+|++.+++.+ |+
T Consensus 1 sK~~~K~~---l~~~gIptp~~~~~~~~~--------e~~~~~~~i-g~PvVvKP~~~~gs~Gv~~v~~~~el~~---a~ 65 (220)
T d1vkza3 1 SKVYAKRF---MKKYGIRTARFEVAETPE--------ELREKIKKF-SPPYVIKADGLARGKGVLILDSKEETIE---KG 65 (220)
T ss_dssp CHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHTTS-CSSEEEEESSCCSSCCEEEESSHHHHHH---HH
T ss_pred CHHHHHHH---HHHCCCCCCCeEEeCCHH--------HHHHHHHHc-CCCEEEEeccccccccceeeccHHHHHH---Hh
Confidence 48899999 899999999999887533 245566889 6999999999999999999999888875 66
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+.++.... -......+|||+|++|. |++|.++.+++....+
T Consensus 66 ~~~~~~~~-------------~~~~~~~vliEe~i~g~-------------------------e~~v~~~~~~~~~~~l- 106 (220)
T d1vkza3 66 SKLIIGEL-------------IKGVKGPVVIDEFLAGN-------------------------ELSAMAVVNGRNFVIL- 106 (220)
T ss_dssp HHHHHTSS-------------STTCCSCEEEEECCCSE-------------------------EEEEEEEEETTEEEEC-
T ss_pred hhhccccc-------------cccccceEeeecccccc-------------------------cceeEEEEeCCEEEEc-
Confidence 66654310 01125789999999997 9999988776544333
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHH-----cCCcceEEEEEEEEcCCCcEEEE
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA-----LQLEGFSRIDAFVNVDNGEVLII 910 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a-----Lg~~G~ariDf~v~~~~g~~~vi 910 (953)
+..+. ....+.++.++..+.....+|++. +....++.++....+.++ ++++|+.++||+++ ++++|||
T Consensus 107 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~d~~~~--~~gp~vi 179 (220)
T d1vkza3 107 PFVRD--YKRLMDGDRGPNTGGMGSWGPVEI---PSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLH--DGDPYIL 179 (220)
T ss_dssp CCCEE--CCEEETTTEEEECSCSEEEECCCC---CHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEE--TTEEEEE
T ss_pred ccccc--cccccccccccccccccccccCCc---cchhhHHHHHHHHHHHHHHhhhhhhhhccceeEEEee--CCCEEEE
Confidence 32222 234556666666555555666552 455555555555444432 35679999999998 4679999
Q ss_pred eeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 911 EINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|||++||.+..+.+-.+ +. .+|++.+++.|+-+.
T Consensus 180 EiN~R~G~~~~~~~~~~-------~~-~dl~~~~l~~a~g~~ 213 (220)
T d1vkza3 180 EYNVRLGDPETEVIVTL-------NP-EGFVNAVLEGYRGGK 213 (220)
T ss_dssp EEESSCCTTHHHHHHHH-------CH-HHHHHHHHHHHHTSC
T ss_pred EEECCCCCCcceeeeec-------cc-ccHHHHHHHHHcCCC
Confidence 99999997544332221 12 389999999988543
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.88 E-value=1.5e-23 Score=187.58 Aligned_cols=95 Identities=45% Similarity=0.648 Sum_probs=78.7
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchh
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 570 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 570 (953)
++||+||+||.|+||+||+.||++|+++|++ .+|+++.|.+++. ..|.
T Consensus 2 ~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~-~~~~v~~i~~~~~-------------------~~~~------------ 49 (96)
T d1iowa1 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKEV-------------------DVTQ------------ 49 (96)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTS-------------------CGGG------------
T ss_pred CceEEEEeCcCchhhHhHHhhHHHHHHHHHH-cCeeEeeecCccc-------------------cchh------------
Confidence 3589999999999999999999999999975 8999886522110 0000
Q ss_pred hHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCcc
Q 002207 571 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDG 650 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg 650 (953)
+ ...++|+|||++||.+||||
T Consensus 50 --------------------------------~---------------------------~~~~~d~vF~~lHG~~GEdG 70 (96)
T d1iowa1 50 --------------------------------L---------------------------KSMGFQKVFIALHGRGGEDG 70 (96)
T ss_dssp --------------------------------T---------------------------TTTTEEEEEECCCSTTTSSS
T ss_pred --------------------------------h---------------------------hccCceeEEEeccCcchhcc
Confidence 0 01236999999999999999
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcC
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMD 676 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~D 676 (953)
+||++||.+|||||||++.++++|||
T Consensus 71 ~iQ~~le~l~IPytGs~~~asal~~D 96 (96)
T d1iowa1 71 TLQGMLELMGLPYTGSGVMASALSMD 96 (96)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred HHHHHHHHcCCCccCCCHHHHHHhcC
Confidence 99999999999999999999999998
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.9e-21 Score=203.88 Aligned_cols=195 Identities=9% Similarity=0.032 Sum_probs=134.1
Q ss_pred HHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCC
Q 002207 208 DASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID 287 (953)
Q Consensus 208 ~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~ 287 (953)
+++++|+++|||+|++..+.+.++ +.++.+ .++|||||||..+++|.|+.+|+|.+|+.+...+......+
T Consensus 1 rF~~~l~~lgi~~p~~~~v~s~~e----a~~~a~-----~iGfPvivKps~~~gG~G~~iv~~~~el~~~~~~a~~~~~~ 71 (259)
T d1a9xa6 1 RFQHAVERLKLKQPANATVTAIEM----AVEKAK-----EIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSND 71 (259)
T ss_dssp HHHHHHHHHTCCCCCEEECCSHHH----HHHHHH-----HHCSSEEEEC-------CEEEECSHHHHHHHHHHCC-----
T ss_pred ChHHHHHHCCCCCCCceEECCHHH----HHHHHH-----HhCCCEEEEECCCCCCCccEeecCHHHHHHHhhhhhccccc
Confidence 478999999999999999987543 333333 37899999999999999999999999988777766544456
Q ss_pred CcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHH
Q 002207 288 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367 (953)
Q Consensus 288 ~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~ 367 (953)
..++||+||.|++|+++.++.++++ +.+. +-++. .+....+.. ......-|..+++++.
T Consensus 72 ~~vlie~~i~~~~Eiev~~i~Dg~~-----~~i~-~i~e~--------------i~~~gvhsg-ds~~~~p~~~l~~~~~ 130 (259)
T d1a9xa6 72 APVLLDHFLDDAVEVDVDAICDGEM-----VLIG-GIMEH--------------IEQAGVHSG-DSACSLPAYTLSQEIQ 130 (259)
T ss_dssp ---EEEBCCTTCEEEEEEEEECSSC-----EEEE-EEEEE--------------SSCTTSCGG-GCCEEESCSSCCHHHH
T ss_pred chhhhhhhcCCCeEEEEEEEEeCCc-----EEEE-eeeec--------------cccCcceeE-eccccccCccCCHHHH
Confidence 7899999999999999999986421 2221 21221 111112221 1123344556999999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHH
Q 002207 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 447 (953)
Q Consensus 368 ~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~l 447 (953)
++++++|.+++++||+.|.++|||++ +++++|||||||++.-| .|...+.+|++.
T Consensus 131 ~~l~~~a~kia~~l~~~G~~~vef~v------------------~~~~~y~iEvNpR~~~~----~~~~~k~tg~~l--- 185 (259)
T d1a9xa6 131 DVMRQQVQKLAFELQVRGLMNVQFAV------------------KNNEVYLIEVNPRAART----VPFVSKATGVPL--- 185 (259)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEE------------------CSSCEEEEEEECSCCTT----HHHHHHHHSCCH---
T ss_pred HHHHHHHHHHHHHhhhccceeEEEEE------------------ECCEEEEEEcccccCCc----eeeeeHhhCCCH---
Confidence 99999999999999999999999986 35689999999998844 467778899975
Q ss_pred HHHHHHHHhh
Q 002207 448 LRTIIGHACS 457 (953)
Q Consensus 448 l~~li~~a~~ 457 (953)
+...++.|+.
T Consensus 186 v~~~~~i~~G 195 (259)
T d1a9xa6 186 AKVAARVMAG 195 (259)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 4445555554
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.86 E-value=1.2e-20 Score=195.36 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=135.1
Q ss_pred HHHHHHHHHHCCCCCCCeE--EecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh--
Q 002207 206 KYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-- 281 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~-- 281 (953)
|..||++|+++||||+|+. .+.+.+ ++.+++++ ++|||||||..+++|.|+.++++.+|+..+....
T Consensus 1 K~~~k~~~~~aGvP~~p~~~~~v~s~~----ea~~~~~~-----ig~P~vvKP~~~~~s~gv~~v~~~~el~~a~~~~~~ 71 (214)
T d1ulza3 1 KARSKEVMKKAGVPVVPGSDGVLKSLE----EAKALARE-----IGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASR 71 (214)
T ss_dssp HHHHHHHHHHTTCCBCCBCSSSCCCHH----HHHHHHHH-----HCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcCCCcCCCCCCHH----HHHHHHHH-----cCCCEEEeeccccCCccceeeeccHHHHHHHHHHHH
Confidence 8899999999999987643 344433 23344332 6789999999999999999999998876544332
Q ss_pred --HhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC
Q 002207 282 --ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359 (953)
Q Consensus 282 --~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P 359 (953)
.....+..+|||+||+|..+..+.++.++.+ ....+......+ .... ........+
T Consensus 72 ~~~~~~~~~~viiEe~i~G~e~~~~~~~~d~~~---~~~~i~~~~~~~-----------------~~~~--~~~~~~~~~ 129 (214)
T d1ulza3 72 EAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHG---NVIHLGERDCSI-----------------QRRN--QKLVEIAPS 129 (214)
T ss_dssp HHHHTTSCCCEEEEECCCSCEEEEEEEEECTTS---CEEEEEEEEEEE-----------------EETT--EEEEEEESC
T ss_pred HHHHhcCCCCceeheeecCcceeeEEEEEcCCC---eEEEEecccccc-----------------Cccc--cceeEEeec
Confidence 2223467899999999844444555654322 222211111110 0000 111122244
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHH
Q 002207 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439 (953)
Q Consensus 360 a~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~ 439 (953)
...+++...++++.+.+++++||++|.+++||++ +++|++||+|||++||.+. +....+
T Consensus 130 ~~~~~e~~~~~~~~~~~~~~~lg~~G~~~vef~~-----------------~~dg~~~~iEin~R~~~~~----~~~~~a 188 (214)
T d1ulza3 130 LILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIA-----------------DQEGNLYFIEMNTRIQVEH----PVSEMV 188 (214)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE-----------------CTTCCEEEEEEECSCCTTH----HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCccceEEEEEE-----------------CCCCCEEEEEecCcCCCch----hhhHHH
Confidence 4578899999999999999999999999999986 6788999999999998541 223346
Q ss_pred hCCCHHHHHHHHHHHHhhh
Q 002207 440 VGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 440 ~G~s~~~ll~~li~~a~~r 458 (953)
+|+|+ +..++..++.+
T Consensus 189 ~Gidl---~~~~v~~alG~ 204 (214)
T d1ulza3 189 TGIDI---VKWQIKIAAGE 204 (214)
T ss_dssp HCCCH---HHHHHHHHTTC
T ss_pred HCcCH---HHHHHHHHCCC
Confidence 79974 56667777776
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=7.2e-21 Score=200.41 Aligned_cols=214 Identities=13% Similarity=0.045 Sum_probs=146.2
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
||..||++|+++|||+|..+ .. . ++++|||||||++++||+||++|+|.+++.+++..+...
T Consensus 1 DK~~~k~~l~~~Gip~P~~~--~~-------~---------~~i~~PvVVKP~~g~gs~Gv~~v~~~~el~~a~~~~~~~ 62 (238)
T d2r7ka2 1 ERSLEGKLLREAGLRVPKKY--ES-------P---------EDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKR 62 (238)
T ss_dssp CHHHHHHHHHHTTCCCCCEE--SS-------G---------GGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCCcccc--cC-------H---------hHCCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHH
Confidence 89999999999999999743 11 1 237899999999999999999999999987776655432
Q ss_pred C-----CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC
Q 002207 285 G-----IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359 (953)
Q Consensus 285 ~-----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P 359 (953)
. .+..++||+||+| .|+++.++...........++..+.-.... +... ....+....++..+.......|
T Consensus 63 ~~~~~~~~~~v~vEe~i~G-~e~~v~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~ 137 (238)
T d2r7ka2 63 GILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNID-GLVR---IPAKDQLEMNINPSYVITGNIP 137 (238)
T ss_dssp TSCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHH-HHTT---SCHHHHHTCCCCCCEEEEEEEE
T ss_pred HhhccCCCCcEEEEEeecC-ceEEEEEeecccccceEEEeeccCCccEEE-EEEE---cCHHheeccCccccCccccccC
Confidence 1 1357999999998 999999986432222111111111000000 0000 0011122334443332233345
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC-CCCC---
Q 002207 360 PRFPIVVINSIREGASLLFQRL------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS-GMEQ--- 429 (953)
Q Consensus 360 a~l~~~~~~~i~~~a~~~~~aL------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P-G~t~--- 429 (953)
+.++++..+++++++.+++++| |++|++++||++ |++|++||+||||++ |.|.
T Consensus 138 ~~l~~~~~~~i~~~~~~i~~~l~~~~~~~~~G~~~ve~~~-----------------~~dg~~~viEinpR~~G~~~~~~ 200 (238)
T d2r7ka2 138 VVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLC-----------------NENLELVVFEMSARVDGGTNSFM 200 (238)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEE-----------------CTTSCEEEEEEESSBCGGGGGGT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcccCccccccHhhHh-----------------hcCCCEEEEEEECCCCCCCccee
Confidence 5699999999999999999999 899999999987 678999999999974 5543
Q ss_pred -cchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 430 -TSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 430 -~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
.+-||.+.....++..+-+...|..|+..
T Consensus 201 ~~~~~~~~~~~~~~~~g~~ia~~i~~~~~~ 230 (238)
T d2r7ka2 201 NGGPYSFLYNGEPLSMGQRIAREIKMALQL 230 (238)
T ss_dssp TCCTTHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHhCcchhhhHHHHHHHHhhhc
Confidence 45578877777888888888888887665
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=5.5e-21 Score=204.85 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=152.8
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEec--------CCc--------------cchhhhhhhhhhcCCCCCCCcEEEeeCCCCC
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQ--------GSE--------------VNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~--------~~~--------------~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs 261 (953)
.||..+|++++++|||+.|+.... ... ...+++.++.+ +++||+||||++++|
T Consensus 1 gdK~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~-----~igfPvvVKP~~~~g 75 (267)
T d1w96a3 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK-----RIGFPVMIKASEGGG 75 (267)
T ss_dssp CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHH-----HHCSSEEEEETTCCT
T ss_pred CCHHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHH-----hcCCCEEEEeecccC
Confidence 389999999999999997632100 000 00112222222 368999999999999
Q ss_pred ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcc
Q 002207 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAI 341 (953)
Q Consensus 262 S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~ 341 (953)
|+||.+|++.+|+.++....+....++.+||||||+|.+|+.+.++.++.+ ..+.+ .. ..
T Consensus 76 s~Gv~iv~~~~el~~a~~~a~~~s~~~~vlVEe~I~G~~~~~~~~~~~~~~---~~v~~-~~-~~--------------- 135 (267)
T d1w96a3 76 GKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYG---TNISL-FG-RD--------------- 135 (267)
T ss_dssp TTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCSCEEEEEEEEECTTS---CEEEE-EE-EE---------------
T ss_pred CeeEEeecccchhhhhhhhhhhhcccchhhhhhhccchhhhhhhheeccCc---ceeee-cc-cc---------------
Confidence 999999999999887666655544578999999999866677777764332 22221 11 11
Q ss_pred cccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEee
Q 002207 342 FNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421 (953)
Q Consensus 342 ~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEI 421 (953)
..+...+. . ...+..|..++++..+++.+.+.+++++||+.|.+++||+++ .++|++|||||
T Consensus 136 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~lg~~g~~~vd~~~~----------------~~~g~~yviEi 197 (267)
T d1w96a3 136 CSVQRRHQ-K-IIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYS----------------HDDGKFYFLEL 197 (267)
T ss_dssp EEEEETTE-E-EEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEC----------------TTTCCEEEEEE
T ss_pred cccccccc-c-ccceeecccCchHHHHHHHHHHHHHHHHhCCccccceeeeee----------------CCCCcEEEEEe
Confidence 11111111 1 133445667999999999999999999999999999999873 25789999999
Q ss_pred cCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC-CCCC-------CCCCcceecccccccCCC
Q 002207 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF-PNLA-------SYNSVSSHLPGRSSGSKP 481 (953)
Q Consensus 422 N~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~-~~~~-------~~~~~~~~~~~~~~~~~~ 481 (953)
||+++-+ +|....++|+++ +..+++.|+..- ..+. ........++.|++.+++
T Consensus 198 NpR~~~~----~~~~~~atGvdl---~~~~i~~a~G~pl~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 258 (267)
T d1w96a3 198 NPRLQVE----HPTTEMVSGVNL---PAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDA 258 (267)
T ss_dssp ECSCCTT----THHHHHHHCCCH---HHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHH
T ss_pred ccccccc----eeEEeeeeCCCH---HHHHHHHHCCCChhhcchhhhhcCCCCCCccCeEeeeeCCCC
Confidence 9998744 244556789975 555677777642 0110 001123667777777663
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.6e-20 Score=200.34 Aligned_cols=201 Identities=12% Similarity=0.066 Sum_probs=150.0
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
||.++|++|+++|||||++..+.+.++ +.++++ +++||+||||..+++|.|+.+|++.+|+.+...+.+..
T Consensus 1 Dr~~~r~~~~~~gip~~~~~~~~~~~e----a~~~~~-----~ig~PvviKp~~~~gg~G~~~v~~~~el~~~~~~a~~~ 71 (275)
T d1a9xa5 1 DRRRFDVAMKKIGLETARSGIAHTMEE----ALAVAA-----DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL 71 (275)
T ss_dssp SHHHHHHHHHHTTCCCCSEEEESSHHH----HHHHHH-----HHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCceEeCCHHH----HHHHHH-----HcCCCEEEEECCCCCCCceEEeeCHHHHHHHHHHHHhh
Confidence 899999999999999999998876543 333333 36889999999999999999999999988777766555
Q ss_pred CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CC
Q 002207 285 GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FP 363 (953)
Q Consensus 285 ~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~ 363 (953)
..+++++||+||+|++|+++.++.+++++ .++....+. .......+ ++.....|+. ++
T Consensus 72 ~~~~~v~iEe~l~g~~e~~v~~~~d~~g~---~~~~~~~~~---------------~~~~~~~~---~~~~~~aP~~~L~ 130 (275)
T d1a9xa5 72 SPTKELLIDESLIGWKEYEMEVVRDKNDN---CIIVCSIEN---------------FDAMGIHT---GDSITVAPAQTLT 130 (275)
T ss_dssp CTTSCEEEEECCTTSEEEEEEEEECTTCC---EEEEEEEEE---------------SSCTTSCG---GGSCEEESCCSCC
T ss_pred CCCCcEEEeeecCCchhheeeeEEecCCC---EEEEEeecc---------------ccccCccc---CceeEEcCCCcCC
Confidence 56789999999998789999999865443 222222211 00111111 1133456665 99
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCC
Q 002207 364 IVVINSIREGASLLFQRLGLC-DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 442 (953)
Q Consensus 364 ~~~~~~i~~~a~~~~~aLg~~-G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~ 442 (953)
++++++|++.|.++.++||+. |..+++|+++ .++|++||+|+||+++.+ .|.....+|+
T Consensus 131 ~~~~~~i~~~a~~i~~~lg~~~G~~~~ef~~~----------------~~~~~~~~iE~npR~~~~----~~~~~~~tgi 190 (275)
T d1a9xa5 131 DKEYQIMRNASMAVLREIGVETGGSNVQFAVN----------------PKNGRLIVIEMNPRVSRS----SALASKATGF 190 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEC----------------TTTCCEEEEEEESSCCHH----HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcCceECceEEEEEEe----------------CCCCEEEEEEecCCCCce----ehhhhHhhCC
Confidence 999999999999999999995 9999999873 357899999999887633 2445567899
Q ss_pred CHHHHHHHHHHHHhhh
Q 002207 443 SHSNILRTIIGHACSR 458 (953)
Q Consensus 443 s~~~ll~~li~~a~~r 458 (953)
+. +...++.|+..
T Consensus 191 dl---v~~~~~~a~G~ 203 (275)
T d1a9xa5 191 PI---AKVAAKLAVGY 203 (275)
T ss_dssp CH---HHHHHHHHTTC
T ss_pred CH---HHHHHHHHcCC
Confidence 75 45556666653
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5e-21 Score=199.32 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
.|..+|++|+++|||||++..+.+.+.. .++++ ..+||+||||..+++|+||.++++.+++.++....+..
T Consensus 1 SK~f~K~~~~~~~IPt~~~~~~~~~~ea----~~~~~-----~~~~P~VvK~~~~~~gkGv~i~~~~~e~~~a~~~~~~~ 71 (224)
T d1gsoa3 1 SKAFTKDFLARHKIPTAEYQNFTEVEPA----LAYLR-----EKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAG 71 (224)
T ss_dssp CHHHHHHHHHHTTCCBCCEEEESSSSHH----HHHHH-----HHCSSEEEEC------CCEEEESSHHHHHHHHTTTTCS
T ss_pred CHHHHHHHHHHcCCCCCCceEeCCHHHH----HHHHH-----HcCCCEEEEeCCcccccceeeehhHHHHHHHHHHHHhc
Confidence 4889999999999999999999876543 33333 26789999999999999999999999988777665432
Q ss_pred C----CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC
Q 002207 285 G----IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360 (953)
Q Consensus 285 ~----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa 360 (953)
. .++.++|||||.| +|+++.++.++. ..+.+++. . +...+||++..+..++ +....|+
T Consensus 72 ~~~~~~~~~vliEefl~G-~E~s~~~i~dg~----~~~~~~~~--~----------d~kr~~d~~~gp~tgg-mg~~~P~ 133 (224)
T d1gsoa3 72 NAFGDAGHRIVIEEFLDG-EEASFIVMVDGE----HVLPMATS--Q----------DHKRVGDKDTGPNTGG-MGAYSPA 133 (224)
T ss_dssp CCTTCTTCCEEEEECCCE-EEEEEEEEEESS----CEEEEEEE--E----------EEEEEETTTEEEEEEE-EEEEESC
T ss_pred ccccccCceEEeeccccc-ccceeEEEeccC----ceEeeecc--c----------cccccccccccccccc-ccccCCC
Confidence 1 2367999999998 999999996432 22222221 1 1345788888777655 6677887
Q ss_pred C-CC----HHHHHHHHHHHHHHHHHhCC--CCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc-ch
Q 002207 361 R-FP----IVVINSIREGASLLFQRLGL--CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT-SF 432 (953)
Q Consensus 361 ~-l~----~~~~~~i~~~a~~~~~aLg~--~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~-S~ 432 (953)
+ ++ +++.+.+.+.+.++.++.|+ +|+.++++++ +++|++||||+|+++|...+ .+
T Consensus 134 p~~~~~l~~~~~~~i~~~~~~~~~~~g~~~~G~l~~~~mi-----------------t~~G~p~vlE~N~R~Gdpe~~~i 196 (224)
T d1gsoa3 134 PVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI-----------------DKQGNPKVIEFNCRFGDLETQPI 196 (224)
T ss_dssp TTCCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEE-----------------ETTCCEEEEEEESSCCTTTHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCceeeeeeccceee-----------------eeCCCEEEEEEecCCCCCcceee
Confidence 5 33 44555566666777888885 5899999876 78899999999999997765 44
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 002207 433 LFQQASKVGFSHSNILRTIIG 453 (953)
Q Consensus 433 ~p~~a~~~G~s~~~ll~~li~ 453 (953)
+|. ..-++-+++..+++
T Consensus 197 l~~----l~~dl~e~~~~~~~ 213 (224)
T d1gsoa3 197 MLR----MKSDLVELCLAACE 213 (224)
T ss_dssp HHH----BCSCHHHHHHHHHT
T ss_pred hhh----hcCCHHHHHHHHHh
Confidence 443 23365555555543
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.84 E-value=6.2e-20 Score=189.98 Aligned_cols=200 Identities=14% Similarity=0.158 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHCCCCccCeE--EEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKD--VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~a 754 (953)
|..||++ |+++||||+|+. .+++. +.+.++.+++ +||+||||.++++|.||.++++.+|+..+.+.
T Consensus 1 K~~~k~~---~~~aGvP~~p~~~~~v~s~--------~ea~~~~~~i-g~P~vvKP~~~~~s~gv~~v~~~~el~~a~~~ 68 (214)
T d1ulza3 1 KARSKEV---MKKAGVPVVPGSDGVLKSL--------EEAKALAREI-GYPVLLKATAGGGGRGIRICRNEEELVKNYEQ 68 (214)
T ss_dssp HHHHHHH---HHHTTCCBCCBCSSSCCCH--------HHHHHHHHHH-CSSEEEEECSSSSCCSCEEESSHHHHHHHHHH
T ss_pred CHHHHHH---HHHcCCCcCCCcCCCCCCH--------HHHHHHHHHc-CCCEEEeeccccCCccceeeeccHHHHHHHHH
Confidence 7899999 999999986642 23332 2245566788 69999999999999999999999998864332
Q ss_pred H-HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCcee
Q 002207 755 L-EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 833 (953)
Q Consensus 755 l-~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~ 833 (953)
. ..+... .....+|||+||+|. .+..+.++.+......
T Consensus 69 ~~~~~~~~-----------------~~~~~viiEe~i~G~------------------------e~~~~~~~~d~~~~~~ 107 (214)
T d1ulza3 69 ASREAEKA-----------------FGRGDLLLEKFIENP------------------------KHIEYQVLGDKHGNVI 107 (214)
T ss_dssp HHHHHHHT-----------------TSCCCEEEEECCCSC------------------------EEEEEEEEECTTSCEE
T ss_pred HHHHHHHh-----------------cCCCCceeheeecCc------------------------ceeeEEEEEcCCCeEE
Confidence 2 222222 125789999999997 2444555555432221
Q ss_pred eCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeC
Q 002207 834 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913 (953)
Q Consensus 834 ~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEIN 913 (953)
...... +.+. ..........++. ..+++...++++.+.+++++||+.|.+++||+++. +|++||||+|
T Consensus 108 ~i~~~~-------~~~~--~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~lg~~G~~~vef~~~~-dg~~~~iEin 175 (214)
T d1ulza3 108 HLGERD-------CSIQ--RRNQKLVEIAPSL--ILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMN 175 (214)
T ss_dssp EEEEEE-------EEEE--ETTEEEEEEESCS--SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEE
T ss_pred EEeccc-------cccC--ccccceeEEeecc--cccHHHHHHHHHHHHHHHHHcCCccceEEEEEECC-CCCEEEEEec
Confidence 111110 0000 0011112233333 25788999999999999999999999999999986 7899999999
Q ss_pred CCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 914 t~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
++||.+. .+..+|. | + +++..++++++-
T Consensus 176 ~R~~~~~--~~~~~a~---G--i--dl~~~~v~~alG 203 (214)
T d1ulza3 176 TRIQVEH--PVSEMVT---G--I--DIVKWQIKIAAG 203 (214)
T ss_dssp CSCCTTH--HHHHHHH---C--C--CHHHHHHHHHTT
T ss_pred CcCCCch--hhhHHHH---C--c--CHHHHHHHHHCC
Confidence 9998653 2444442 2 2 566667777664
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=5e-20 Score=191.04 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=143.8
Q ss_pred cHHHHHHHHHHCCCCCCCeE---EecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh
Q 002207 205 DKYDASLEMSKQGFITVPSF---LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~ 281 (953)
||..+|+.|+++||||+|+. ++++. +++.++.+ .++||+||||.+++||.|+.+|++.+|+.++....
T Consensus 1 dK~~~~~~~~~~GvP~vp~~~~~~~~s~----dea~~~a~-----~iG~PvivKp~~~~ggrGv~~v~~~~el~~a~~~~ 71 (216)
T d2j9ga3 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDM----DKNRAIAK-----RIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMT 71 (216)
T ss_dssp SHHHHHHHHHHHTCCBCCBCSSCCCSCH----HHHHHHHH-----HHCSSEEEEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCCCCCCCCCCH----HHHHHHHH-----HcCCCEEEecccccCCceeEeecchhHHHHHHHHH
Confidence 89999999999999986643 22222 23334433 36889999999999999999999999987665543
Q ss_pred Hh----cCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEE
Q 002207 282 IL----EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357 (953)
Q Consensus 282 ~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~ 357 (953)
+. ...++.++||+||+|.+++.+.++.++.++ .+.+.-.... .. .+.. .....
T Consensus 72 ~~ea~~~~~~~~vlvE~~i~g~~~~~~~i~~dg~~~---~~~~~~~~~~-----------------~~-~~~~--~~~~~ 128 (216)
T d2j9ga3 72 RAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGN---AIYLAERDCS-----------------MQ-RRHQ--KVVEE 128 (216)
T ss_dssp HHHTC--CCCCCEEEEECCSSCEEEEEEEEEESSSC---EEEEEEEEEE-----------------EE-ETTE--EEEEE
T ss_pred HHHHHHhcCCCceEeeeeecCcccceeEEEEcCCCC---eeeccccccC-----------------cc-cccC--CeEEe
Confidence 22 234678999999999788888888765443 2221111111 11 1111 13455
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHH
Q 002207 358 TPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436 (953)
Q Consensus 358 ~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~ 436 (953)
.|+. .+++..+.+++++.++++.+|++|.+++||++ + +|++||+||||+++.+ .|..
T Consensus 129 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~-----------------~-~~~~~viEvnpR~~~~----~~~~ 186 (216)
T d2j9ga3 129 APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-----------------E-NGEFYFIEMNTRIQVE----HPVT 186 (216)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE-----------------E-TTEEEEEEEECSCCTT----HHHH
T ss_pred ccCccccchhhhhhHHHHHHHHHHcCccCcceeEeEe-----------------c-CCeEEEEeecCccccc----hhhh
Confidence 6775 77888999999999999999999999999986 4 6789999999999844 2445
Q ss_pred HHHhCCCHHHHHHHHHHHHhhh
Q 002207 437 ASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 437 a~~~G~s~~~ll~~li~~a~~r 458 (953)
..++|+| ++...|+.|+..
T Consensus 187 ~~~tGvd---lv~~~i~~alG~ 205 (216)
T d2j9ga3 187 EMITGVD---LIKEQLRIAAGQ 205 (216)
T ss_dssp HHHHCCC---HHHHHHHHHTTC
T ss_pred hHHHCcC---HHHHHHHHHCCC
Confidence 6678996 677788888876
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.8e-20 Score=193.63 Aligned_cols=190 Identities=15% Similarity=0.116 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
.|.++|++ |+++|||||+|..+++.+ .+.++.+++ +||+||||..+++|+||.++++.+++.+ |+
T Consensus 1 SK~f~K~~---~~~~~IPt~~~~~~~~~~--------ea~~~~~~~-~~P~VvK~~~~~~gkGv~i~~~~~e~~~---a~ 65 (224)
T d1gsoa3 1 SKAFTKDF---LARHKIPTAEYQNFTEVE--------PALAYLREK-GAPIVIKADGLAAGKGVIVAMTLEEAEA---AV 65 (224)
T ss_dssp CHHHHHHH---HHHTTCCBCCEEEESSSS--------HHHHHHHHH-CSSEEEEC------CCEEEESSHHHHHH---HH
T ss_pred CHHHHHHH---HHHcCCCCCCceEeCCHH--------HHHHHHHHc-CCCEEEEeCCcccccceeeehhHHHHHH---HH
Confidence 38899999 999999999999987643 133455678 6999999999999999999999888875 56
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+..+.... . ....+.++||+||.|+ |++|.++.+++....++
T Consensus 66 ~~~~~~~~---~----------~~~~~~vliEefl~G~-------------------------E~s~~~i~dg~~~~~~~ 107 (224)
T d1gsoa3 66 HDMLAGNA---F----------GDAGHRIVIEEFLDGE-------------------------EASFIVMVDGEHVLPMA 107 (224)
T ss_dssp TTTTCSCC---T----------TCTTCCEEEEECCCEE-------------------------EEEEEEEEESSCEEEEE
T ss_pred HHHHhccc---c----------cccCceEEeecccccc-------------------------cceeEEEeccCceEeee
Confidence 55543210 0 0114789999999997 99999998776654433
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHH----HHHHHHHHHHHcCC--cceEEEEEEEEcCCCcEEE
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK----CKQRIELIANALQL--EGFSRIDAFVNVDNGEVLI 909 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~----i~~~a~~~~~aLg~--~G~ariDf~v~~~~g~~~v 909 (953)
+. .....+||++.+++.|....+.|++. +++.+.++ +.+.+.++.++.|+ .|+.+++|+++. +|++||
T Consensus 108 ~~---~d~kr~~d~~~gp~tggmg~~~P~p~--~~~~l~~~~~~~i~~~~~~~~~~~g~~~~G~l~~~~mit~-~G~p~v 181 (224)
T d1gsoa3 108 TS---QDHKRVGDKDTGPNTGGMGAYSPAPV--VTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDK-QGNPKV 181 (224)
T ss_dssp EE---EEEEEEETTTEEEEEEEEEEEESCTT--CCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TCCEEE
T ss_pred cc---cccccccccccccccccccccCCCch--hhHHHHHHHHHHHHHHHHHHHHhcCceeeeeeccceeeee-CCCEEE
Confidence 22 23345888888888888888899874 45554444 44455666777775 599999999995 689999
Q ss_pred EeeCCCCCCCCCchH
Q 002207 910 IEVNTVPGMTPSTVL 924 (953)
Q Consensus 910 iEINt~PGlt~~S~l 924 (953)
||+|+++|....-.+
T Consensus 182 lE~N~R~Gdpe~~~i 196 (224)
T d1gsoa3 182 IEFNCRFGDLETQPI 196 (224)
T ss_dssp EEEESSCCTTTHHHH
T ss_pred EEEecCCCCCcceee
Confidence 999999998765433
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.2e-19 Score=194.41 Aligned_cols=206 Identities=11% Similarity=0.108 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEE-------Ee-Ccccc----------CCchhhHHHHHHhhcCCCcEEEecCCCCCCc
Q 002207 676 DKVATSLALNHLADLGVLTINKDV-------RR-KEDLL----------KTPIVDIWHELTSKLQCKTLCVKPARDGCST 737 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~-------v~-~~~~~----------~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~ 737 (953)
||..+|++ ++++|||+.++.- .. ..... .....+.+.++.+++ +||+||||++++||+
T Consensus 2 dK~~ak~l---A~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~i-gfPvvVKP~~~~gs~ 77 (267)
T d1w96a3 2 DKISSTIV---AQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRI-GFPVMIKASEGGGGK 77 (267)
T ss_dssp SHHHHHHH---HHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHH-CSSEEEEETTCCTTT
T ss_pred CHHHHHHH---HHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhc-CCCEEEEeecccCCe
Confidence 78888887 7888888755310 00 00000 001123345566789 699999999999999
Q ss_pred ceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCce
Q 002207 738 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817 (953)
Q Consensus 738 GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~ 817 (953)
||.+|++.+||.. +++.++.+. .+..+|||+||+|.
T Consensus 78 Gv~iv~~~~el~~---a~~~a~~~s-----------------~~~~vlVEe~I~G~------------------------ 113 (267)
T d1w96a3 78 GIRQVEREEDFIA---LYHQAANEI-----------------PGSPIFIMKLAGRA------------------------ 113 (267)
T ss_dssp TEEEECSHHHHHH---HHHHHHHHS-----------------TTCCEEEEECCCSC------------------------
T ss_pred eEEeecccchhhh---hhhhhhhhc-----------------ccchhhhhhhccch------------------------
Confidence 9999999999986 555555542 15789999999996
Q ss_pred eEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q 002207 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRID 897 (953)
Q Consensus 818 ~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariD 897 (953)
.|+.+.++++............. .+. ++..+... ..|++. ++++..+++.+.+.+++++||+.|.+++|
T Consensus 114 ~~~~~~~~~~~~~~~v~~~~~~~-------~~~-~~~~~~~~-~~~~~~--~~~~~~~~~~~~a~~~~~~lg~~g~~~vd 182 (267)
T d1w96a3 114 RHLEVQLLADQYGTNISLFGRDC-------SVQ-RRHQKIIE-EAPVTI--AKAETFHEMEKAAVRLGKLVGYVSAGTVE 182 (267)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEE-------EEE-ETTEEEEE-EESCCS--SCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hhhhhhheeccCcceeeeccccc-------ccc-cccccccc-eeeccc--CchHHHHHHHHHHHHHHHHhCCcccccee
Confidence 36667777665332222111111 111 11111122 233332 68899999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 898 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 898 f~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
|+++.++|++|||||||+++-+ +.+..++. .+ +|+...+++|+
T Consensus 183 ~~~~~~~g~~yviEiNpR~~~~--~~~~~~at-----Gv--dl~~~~i~~a~ 225 (267)
T d1w96a3 183 YLYSHDDGKFYFLELNPRLQVE--HPTTEMVS-----GV--NLPAAQLQIAM 225 (267)
T ss_dssp EEECTTTCCEEEEEEECSCCTT--THHHHHHH-----CC--CHHHHHHHHHT
T ss_pred eeeeCCCCcEEEEEeccccccc--eeEEeeee-----CC--CHHHHHHHHHC
Confidence 9998768999999999987654 44555543 12 56666666665
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.9e-19 Score=190.82 Aligned_cols=179 Identities=19% Similarity=0.202 Sum_probs=127.2
Q ss_pred HHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHH
Q 002207 680 TSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECL 759 (953)
Q Consensus 680 tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~ 759 (953)
++++ |+++|||+|+|..+++.+ .+.++.+++ +||++|||+.++++.|+.+|++.+||.. +++.+.
T Consensus 2 F~~~---l~~lgi~~p~~~~v~s~~--------ea~~~a~~i-GfPvivKps~~~gG~G~~iv~~~~el~~---~~~~a~ 66 (259)
T d1a9xa6 2 FQHA---VERLKLKQPANATVTAIE--------MAVEKAKEI-GYPLVVRASYVLGGRAMEIVYDEADLRR---YFQTAV 66 (259)
T ss_dssp HHHH---HHHHTCCCCCEEECCSHH--------HHHHHHHHH-CSSEEEEC-------CEEEECSHHHHHH---HHHHCC
T ss_pred hHHH---HHHCCCCCCCceEECCHH--------HHHHHHHHh-CCCEEEEECCCCCCCccEeecCHHHHHH---Hhhhhh
Confidence 5666 899999999999987633 245567788 6999999999999999999999999986 455554
Q ss_pred hhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEE
Q 002207 760 LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT 839 (953)
Q Consensus 760 ~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~ 839 (953)
.. ..+.++++|+||++. +|+++.++++++. ..+.+.++
T Consensus 67 ~~-----------------~~~~~vlie~~i~~~------------------------~Eiev~~i~Dg~~-~~i~~i~e 104 (259)
T d1a9xa6 67 SV-----------------SNDAPVLLDHFLDDA------------------------VEVDVDAICDGEM-VLIGGIME 104 (259)
T ss_dssp -------------------------EEEBCCTTC------------------------EEEEEEEEECSSC-EEEEEEEE
T ss_pred cc-----------------cccchhhhhhhcCCC------------------------eEEEEEEEEeCCc-EEEEeeee
Confidence 33 125789999999985 6999999998644 34555566
Q ss_pred EecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 840 VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 840 i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.....++.. +.+....|++. +++++.+++++.+.+++++||+.|.++|||+++ ++++||||+||++.-|
T Consensus 105 ~i~~~gvhs-------gds~~~~p~~~--l~~~~~~~l~~~a~kia~~l~~~G~~~vef~v~--~~~~y~iEvNpR~~~~ 173 (259)
T d1a9xa6 105 HIEQAGVHS-------GDSACSLPAYT--LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAART 173 (259)
T ss_dssp ESSCTTSCG-------GGCCEEESCSS--CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC--SSCEEEEEEECSCCTT
T ss_pred ccccCccee-------EeccccccCcc--CCHHHHHHHHHHHHHHHHHhhhccceeEEEEEE--CCEEEEEEcccccCCc
Confidence 555444433 22333456553 799999999999999999999999999999996 5789999999877654
Q ss_pred CCchHHHHH
Q 002207 920 PSTVLIHQA 928 (953)
Q Consensus 920 ~~S~l~~~a 928 (953)
..+..++
T Consensus 174 --~~~~~k~ 180 (259)
T d1a9xa6 174 --VPFVSKA 180 (259)
T ss_dssp --HHHHHHH
T ss_pred --eeeeeHh
Confidence 3444444
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=5.8e-19 Score=189.63 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=138.9
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..+|++ |+++|||||++..+++.+ .+.++.+++ +||++|||+.++++.|+.+|++.++|.. ++
T Consensus 1 Dr~~~r~~---~~~~gip~~~~~~~~~~~--------ea~~~~~~i-g~PvviKp~~~~gg~G~~~v~~~~el~~---~~ 65 (275)
T d1a9xa5 1 DRRRFDVA---MKKIGLETARSGIAHTME--------EALAVAADV-GFPCIIRPSFTMGGSGGGIAYNREEFEE---IC 65 (275)
T ss_dssp SHHHHHHH---HHHTTCCCCSEEEESSHH--------HHHHHHHHH-CSSEEEEETTCCTTTTCEEESSHHHHHH---HH
T ss_pred CHHHHHHH---HHHCCCCCCCceEeCCHH--------HHHHHHHHc-CCCEEEEECCCCCCCceEEeeCHHHHHH---HH
Confidence 78999998 899999999998886532 234566788 6999999999999999999999999886 56
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+++.... ....++||+||+|. +|+++.++++++....+.
T Consensus 66 ~~a~~~~-----------------~~~~v~iEe~l~g~------------------------~e~~v~~~~d~~g~~~~~ 104 (275)
T d1a9xa5 66 ARGLDLS-----------------PTKELLIDESLIGW------------------------KEYEMEVVRDKNDNCIIV 104 (275)
T ss_dssp HHHHHHC-----------------TTSCEEEEECCTTS------------------------EEEEEEEEECTTCCEEEE
T ss_pred HHHHhhC-----------------CCCcEEEeeecCCc------------------------hhheeeeEEecCCCEEEE
Confidence 6665442 25789999999996 599999998875554444
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEEcCCCcEEEEeeCC
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~-G~ariDf~v~~~~g~~~viEINt 914 (953)
+..+.....+. +.+......|++. +++++.+++++.+.+++++||+. |.+.++|+++.++|++|++|+||
T Consensus 105 ~~~~~~~~~~~-------~~~~~~~~aP~~~--L~~~~~~~i~~~a~~i~~~lg~~~G~~~~ef~~~~~~~~~~~iE~np 175 (275)
T d1a9xa5 105 CSIENFDAMGI-------HTGDSITVAPAQT--LTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 175 (275)
T ss_dssp EEEEESSCTTS-------CGGGSCEEESCCS--CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEES
T ss_pred EeeccccccCc-------ccCceeEEcCCCc--CCHHHHHHHHHHHHHHHHHcCceECceEEEEEEeCCCCEEEEEEecC
Confidence 44333211111 1233445677763 89999999999999999999995 99999999987789999999997
Q ss_pred CCCC
Q 002207 915 VPGM 918 (953)
Q Consensus 915 ~PGl 918 (953)
.+..
T Consensus 176 R~~~ 179 (275)
T d1a9xa5 176 RVSR 179 (275)
T ss_dssp SCCH
T ss_pred CCCc
Confidence 6543
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.1e-19 Score=182.58 Aligned_cols=180 Identities=14% Similarity=0.035 Sum_probs=131.1
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~ 284 (953)
||..||++|+++|||||+|..+.+.++. .++++ .++||+||||..+++|.|..++.+.+++...+.
T Consensus 1 DK~~~K~~l~~~GIptp~~~~v~s~~d~----~~~~~-----~ig~P~vvKp~~~~~~~~~~~v~~~~~~~~~~~----- 66 (198)
T d3etja3 1 DRLTQKQLFDKLHLPTAPWQLLAERSEW----PAVFD-----RLGELAIVKRRTGGYDGRGQWRLRANETEQLPA----- 66 (198)
T ss_dssp SHHHHHHHHHHTTCCBCCEEEECCGGGH----HHHHH-----HHCSCEEEEESSSCBTTBSEEEECGGGGGGSCG-----
T ss_pred CHHHHHHHHHHCCcCCCCceEECCHHHH----HHHHH-----HcCCCeeeeecccccccceeeecchhhHHHHHh-----
Confidence 8999999999999999999999876543 33332 268899999999987777766666555443332
Q ss_pred CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCH
Q 002207 285 GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364 (953)
Q Consensus 285 ~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~ 364 (953)
..+..+++|+|+.+++|+++.++.+..+ ......+.+. .....+ ......|+.+++
T Consensus 67 ~~~~~~i~ee~i~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------------~~~~~~----~~~~~~p~~~~~ 122 (198)
T d3etja3 67 ECYGECIVEQGINFSGEVSLVGARGFDG---STVFYPLTHN-----------------LHQDGI----LRTSVAFPQANA 122 (198)
T ss_dssp GGTTTEEEEECCCCSEEEEEEEEECTTS---CEEECCCEEE-----------------EEETTE----EEEEEECSSCCH
T ss_pred ccCceEEEeeeccccccccceeeecccc---eeeeeceeec-----------------cccccc----eeeeeecccccc
Confidence 2467899999999778999999864322 1111111110 111111 134567889999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 365 ~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+...++.+++.++++++++.|..++||++ ++ +++||+|||++|+-+. ++ ...++|+|.
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-----------------~~-~~~~v~Evn~Rp~~~g--~~--~~~~~~~s~ 180 (198)
T d3etja3 123 QQQARAEEMLSAIMQELGYVGVMAMECFV-----------------TP-QGLLINELAPRVHNSG--HW--TQNGASISQ 180 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEE-----------------ET-TEEEEEEEESSCCGGG--TT--HHHHSSSCH
T ss_pred chhhhhhhhhhHHHHhhhhcccchhheee-----------------cC-CcEEEEEEECCccccc--ce--EeecccCCH
Confidence 99999999999999999999999999986 44 4699999999998543 22 345789994
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4.5e-19 Score=183.76 Aligned_cols=201 Identities=14% Similarity=0.216 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHCCCCccCeE---EEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKD---VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~---~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~ 752 (953)
||..+|++ ++++||||+|+. ++++ .+.+.++.+++ +||++|||+.+++|+|+.+|++.+||.++
T Consensus 1 dK~~~~~~---~~~~GvP~vp~~~~~~~~s--------~dea~~~a~~i-G~PvivKp~~~~ggrGv~~v~~~~el~~a- 67 (216)
T d2j9ga3 1 DKVSAIAA---MKKAGVPCVPGSDGPLGDD--------MDKNRAIAKRI-GYPVIIKASGGGGGRGMRVVRGDAELAQS- 67 (216)
T ss_dssp SHHHHHHH---HHHHTCCBCCBCSSCCCSC--------HHHHHHHHHHH-CSSEEEEEEEEETTEEEEEECSHHHHHHH-
T ss_pred CHHHHHHH---HHHcCcCCCCCCCCCCCCC--------HHHHHHHHHHc-CCCEEEecccccCCceeEeecchhHHHHH-
Confidence 89999999 999999976643 2221 23345567788 69999999999999999999999999874
Q ss_pred HHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCce
Q 002207 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 832 (953)
Q Consensus 753 ~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~ 832 (953)
++..+.... . ...++.++||+||+|. +++.+.++.+.....
T Consensus 68 --~~~~~~ea~-----~--------~~~~~~vlvE~~i~g~------------------------~~~~~~i~~dg~~~~ 108 (216)
T d2j9ga3 68 --ISMTRAEAK-----A--------AFSNDMVYMEKYLENP------------------------RHVEIQVLADGQGNA 108 (216)
T ss_dssp --HHHHHHHTC---------------CCCCCEEEEECCSSC------------------------EEEEEEEEEESSSCE
T ss_pred --HHHHHHHHH-----H--------hcCCCceEeeeeecCc------------------------ccceeEEEEcCCCCe
Confidence 443332100 0 0126789999999996 366777776643322
Q ss_pred eeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEee
Q 002207 833 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912 (953)
Q Consensus 833 ~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEI 912 (953)
........ ... .+. .......|++. .+++..+.+++++.++++.+++.|.+++||+++ +|++||||+
T Consensus 109 ~~~~~~~~-------~~~-~~~-~~~~~~~P~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~--~~~~~viEv 175 (216)
T d2j9ga3 109 IYLAERDC-------SMQ-RRH-QKVVEEAPAPG--ITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEM 175 (216)
T ss_dssp EEEEEEEE-------EEE-ETT-EEEEEEESCTT--CCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE--TTEEEEEEE
T ss_pred eecccccc-------Ccc-ccc-CCeEEeccCcc--ccchhhhhhHHHHHHHHHHcCccCcceeEeEec--CCeEEEEee
Confidence 11111111 111 111 12345667764 678889999999999999999999999999998 588999999
Q ss_pred CCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 913 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 913 Nt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||+++-+. .+..++. .+ ++++..|+.|+-
T Consensus 176 npR~~~~~--~~~~~~t-----Gv--dlv~~~i~~alG 204 (216)
T d2j9ga3 176 NTRIQVEH--PVTEMIT-----GV--DLIKEQLRIAAG 204 (216)
T ss_dssp ECSCCTTH--HHHHHHH-----CC--CHHHHHHHHHTT
T ss_pred cCccccch--hhhhHHH-----Cc--CHHHHHHHHHCC
Confidence 99998653 3444432 23 677778877763
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.79 E-value=5.1e-19 Score=186.07 Aligned_cols=182 Identities=14% Similarity=0.043 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..||++ |+++|||||+.+ .. .+++ +||+||||++++||.||++|+|.++|.. ++
T Consensus 1 DK~~~k~~---l~~~Gip~P~~~--~~---------------~~~i-~~PvVVKP~~g~gs~Gv~~v~~~~el~~---a~ 56 (238)
T d2r7ka2 1 ERSLEGKL---LREAGLRVPKKY--ES---------------PEDI-DGTVIVKFPGARGGRGYFIASSTEEFYK---KA 56 (238)
T ss_dssp CHHHHHHH---HHHTTCCCCCEE--SS---------------GGGC-CSCEEEECSCCCC---EEEESSHHHHHH---HH
T ss_pred CHHHHHHH---HHHCCCCCcccc--cC---------------HhHC-CCCEEEEECCCCCCCCeEEeCCHHHHHH---HH
Confidence 89999999 999999999743 11 2457 6999999999999999999999999986 55
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCc-eee
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM-HSL 834 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~-~~~ 834 (953)
+.+.+..- ..+ .....++||+||+|. |+++.++...... ..+
T Consensus 57 ~~~~~~~~-~~~-----------~~~~~v~vEe~i~G~-------------------------e~~v~~~~~~~~~~~~v 99 (238)
T d2r7ka2 57 EDLKKRGI-LTD-----------EDIANAHIEEYVVGT-------------------------NFCIHYFYSPLKDEVEL 99 (238)
T ss_dssp HHHHHTTS-CCH-----------HHHHHCEEEECCCSE-------------------------EEEEEEEEETTTTEEEE
T ss_pred HHHHHHHh-hcc-----------CCCCcEEEEEeecCc-------------------------eEEEEEeecccccceEE
Confidence 55554310 000 013579999999998 6666655432111 000
Q ss_pred CceEEEe--cCCcc------ccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc------CCcceEEEEEEE
Q 002207 835 MPSVTVK--ESGDI------LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL------QLEGFSRIDAFV 900 (953)
Q Consensus 835 ~p~~~i~--~~~~~------~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL------g~~G~ariDf~v 900 (953)
....... .-..+ +..+.++..+......|+.. ++++..+++++.+++++++| |+.|++++||++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~i~~~~~~i~~~l~~~~~~~~~G~~~ve~~~ 177 (238)
T d2r7ka2 100 LGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV--IRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLC 177 (238)
T ss_dssp EEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC--CCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEE
T ss_pred EeeccCCccEEEEEEEcCHHheeccCccccCccccccCcc--ccHHHHHHHHHHHHHHHHHHHHhcccCccccccHhhHh
Confidence 0000000 00011 11223333333344445442 67889999999999999998 889999999999
Q ss_pred EcCCCcEEEEeeCCC-CCCCCC
Q 002207 901 NVDNGEVLIIEVNTV-PGMTPS 921 (953)
Q Consensus 901 ~~~~g~~~viEINt~-PGlt~~ 921 (953)
+. +|++||+||||+ +|.|+.
T Consensus 178 ~~-dg~~~viEinpR~~G~~~~ 198 (238)
T d2r7ka2 178 NE-NLELVVFEMSARVDGGTNS 198 (238)
T ss_dssp CT-TSCEEEEEEESSBCGGGGG
T ss_pred hc-CCCEEEEEEECCCCCCCcc
Confidence 96 799999999995 667654
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=1.3e-18 Score=182.21 Aligned_cols=208 Identities=15% Similarity=0.046 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh-
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL- 283 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~- 283 (953)
||.+||++|+++|||+|+.+ .. . ++++||+||||+.+++|.|+.+|++.+++.+.......
T Consensus 1 DK~~~k~~l~~~Gip~P~~~--~~-------~---------~~i~~P~IVKP~~g~gs~Gv~~v~~~~e~~~~~~~~~~~ 62 (235)
T d2r85a2 1 DRNLERKWLKKAGIRVPEVY--ED-------P---------DDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGI 62 (235)
T ss_dssp SHHHHHHHHHHTTCCCCCBC--SC-------G---------GGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcCCCCchhh--hC-------H---------HHcCCCEEEEECCCCCCCCeEEEechHHHHHHHHHHHhh
Confidence 89999999999999999742 11 1 23789999999999999999999999887766655432
Q ss_pred --cCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCccccc------ccCccCCCceE
Q 002207 284 --EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNY------RRKYLPTQQVA 355 (953)
Q Consensus 284 --~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy------~~Ky~~~~~~~ 355 (953)
......+++|+|++| .|+.+.++.+.............+... . ...++.. ...........
T Consensus 63 ~~~~~~~~~iiee~i~G-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~ 131 (235)
T d2r85a2 63 KRKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDRRYES-N---------VDAIGRIPAKDQLEFDMDITYTVI 131 (235)
T ss_dssp CSGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEEEEEE-E---------GGGGGGSCHHHHTTSCCCCCEEEE
T ss_pred hhhCCCcchhHHhhcCC-eEEEEEEeecccccceEEEEeecCCcc-e---------eeEEEeccceeEecccCCCCccee
Confidence 123578999999998 999999886532211111110001000 0 0111110 01111111122
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHHHh-----CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC-CCCC
Q 002207 356 YHTPPRFPIVVINSIREGASLLFQRL-----GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS-GMEQ 429 (953)
Q Consensus 356 ~~~Pa~l~~~~~~~i~~~a~~~~~aL-----g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P-G~t~ 429 (953)
...|..++.+..+.+++.+.++++++ |++|++++||++ ++||++||+||||++ |.++
T Consensus 132 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~G~~~ve~~~-----------------~~dg~~~viEiNpR~~Gg~~ 194 (235)
T d2r85a2 132 GNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVF-----------------TPDLEFVVFEISARIVAGTN 194 (235)
T ss_dssp EEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEE-----------------CTTSCEEEEEEECSCCGGGG
T ss_pred eccCcccchhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEEE-----------------cCCCCEEEEEEeCCCCCCCc
Confidence 33455678888888888888888877 688999999986 678999999999985 4432
Q ss_pred c----chHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 430 T----SFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 430 ~----S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
. +-|+.......++..+-+..-|..|+..
T Consensus 195 ~~~~~~~y~~~~~~~~l~~g~ri~~ei~~~~~~ 227 (235)
T d2r85a2 195 IFVNGSPYTWLRYDRPVSTGRRIAMEIREAIEN 227 (235)
T ss_dssp GGTTCCTTGGGTCSSCCCHHHHHHHHHHHHHHT
T ss_pred ceecCcCCCHHHHhcchhhhHHHHHHHHhhccc
Confidence 2 2233332233344444444445556554
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.3e-17 Score=169.03 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=123.5
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..||++ |+++|||||+|..+.+.+ .+.++.+++ +||+||||..+++|.|+.++.+.+++..+
T Consensus 1 DK~~~K~~---l~~~GIptp~~~~v~s~~--------d~~~~~~~i-g~P~vvKp~~~~~~~~~~~v~~~~~~~~~---- 64 (198)
T d3etja3 1 DRLTQKQL---FDKLHLPTAPWQLLAERS--------EWPAVFDRL-GELAIVKRRTGGYDGRGQWRLRANETEQL---- 64 (198)
T ss_dssp SHHHHHHH---HHHTTCCBCCEEEECCGG--------GHHHHHHHH-CSCEEEEESSSCBTTBSEEEECGGGGGGS----
T ss_pred CHHHHHHH---HHHCCcCCCCceEECCHH--------HHHHHHHHc-CCCeeeeecccccccceeeecchhhHHHH----
Confidence 89999999 999999999999997643 245566788 69999999999888777776666665421
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+... ...+++|+|+.+. +|+++.++.+........
T Consensus 65 --~~~~-------------------~~~~i~ee~i~~~------------------------~~~~~~~~~~~~~~~~~~ 99 (198)
T d3etja3 65 --PAEC-------------------YGECIVEQGINFS------------------------GEVSLVGARGFDGSTVFY 99 (198)
T ss_dssp --CGGG-------------------TTTEEEEECCCCS------------------------EEEEEEEEECTTSCEEEC
T ss_pred --Hhcc-------------------CceEEEeeecccc------------------------ccccceeeecccceeeee
Confidence 1111 4679999999976 488888886543322222
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~ 915 (953)
......... ........|+. ++++...++.+++.+++++|++.|..++||+++ ++++||+|||++
T Consensus 100 ~~~~~~~~~----------~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~v~Evn~R 164 (198)
T d3etja3 100 PLTHNLHQD----------GILRTSVAFPQ---ANAQQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINELAPR 164 (198)
T ss_dssp CCEEEEEET----------TEEEEEEECSS---CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESS
T ss_pred ceeeccccc----------cceeeeeeccc---cccchhhhhhhhhhHHHHhhhhcccchhheeec--CCcEEEEEEECC
Confidence 221111000 01122345665 589999999999999999999999999999998 358999999999
Q ss_pred CCCCC
Q 002207 916 PGMTP 920 (953)
Q Consensus 916 PGlt~ 920 (953)
|+-+.
T Consensus 165 p~~~g 169 (198)
T d3etja3 165 VHNSG 169 (198)
T ss_dssp CCGGG
T ss_pred ccccc
Confidence 97644
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=6.2e-18 Score=173.73 Aligned_cols=177 Identities=12% Similarity=-0.022 Sum_probs=117.7
Q ss_pred CCHHHHHHhccHHH--HHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHH
Q 002207 195 TGSRACRQAFDKYD--ASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 272 (953)
Q Consensus 195 s~~~a~~i~~DK~~--~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~ 272 (953)
++..+...|.||.. .+.++...++++|.+......... ....+. ...+||+||||.+|++|.||.++++.+
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~--~~~~~~-----~~~~~PvVvKP~~g~~g~Gv~~v~~~~ 73 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYP--NHREML-----TLPTFPVVVKIGHAHSGMGKVKVENHY 73 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES--SGGGGS-----SCCCSSEEEEESSCSTTTTEEEECSHH
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeeccccc--chhHHh-----hhcCCceEEecCCCCCCCCeEEEeecc
Confidence 46789999999954 344544455544433333221110 111111 236789999999999999999999999
Q ss_pred HHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCC
Q 002207 273 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352 (953)
Q Consensus 273 el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~ 352 (953)
++.......+. +++.++||+||++.+|++|.+++ +. .+. .. ... .-.+|..++..+.
T Consensus 74 ~l~~~~~~~~~--~~~~~~vqe~I~~~~dirv~vig----~~--~~~--~~--~~~-----------~~~~~~~n~~~~~ 130 (206)
T d1i7na2 74 DFQDIASVVAL--TQTYATAEPFIDAKYDIRVQKIG----NN--YKA--YM--RTS-----------ISGNWKTNTGSAM 130 (206)
T ss_dssp HHHHHHHHHHH--HTCCEEEEECCCEEEEEEEEEET----TE--EEE--EE--EES-----------SCTTTSCSCCCSS
T ss_pred hhhhHHHHHhh--ccCeEEEEEeecccceEEEEEEe----cc--eeE--EE--eec-----------cccccccccccCc
Confidence 87766554433 46789999999865899999993 21 111 11 111 1234566665543
Q ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 353 ~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
..... .++ .+++.+.++++.+++.|+++|||++ ++||++||+|||+.|.
T Consensus 131 -~~~~~---~~~----~~~~~~~~~~~~~~~~~~~gvD~~~-----------------~~dG~~yvlEvN~~~~ 179 (206)
T d1i7na2 131 -LEQIA---MSD----RYKLWVDACSEMFGGLDICAVKAVH-----------------GKDGKDYIFEVMDCSM 179 (206)
T ss_dssp -EEEEC---CCH----HHHHHHHHHTTGGGCCSEEEEEEEE-----------------ETTSCEEEEEEECTTC
T ss_pred -ccccc---CCh----HHHHHHHHHhhhccccceeeEEEEE-----------------cCCCCEEEEEEcCCCc
Confidence 32222 223 3467778888999999999999876 6899999999999874
|
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=9.1e-18 Score=172.47 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=116.7
Q ss_pred ChHHHHHhcChHHH--HHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCC
Q 002207 667 GVMASKTCMDKVAT--SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744 (953)
Q Consensus 667 ~~~as~l~~DK~~t--k~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~ 744 (953)
+..+...|.||.++ +.+ +...++++|.+..+....... +.+....+ +||+||||.++++|.||.++++
T Consensus 2 s~~si~~~~dK~~v~~~l~---~~~~~l~~~~~p~~~~~~~~~------~~~~~~~~-~~PvVvKP~~g~~g~Gv~~v~~ 71 (206)
T d1i7na2 2 SLESIYNFCDKPWVFAQMV---AIFKTLGGEKFPLIEQTYYPN------HREMLTLP-TFPVVVKIGHAHSGMGKVKVEN 71 (206)
T ss_dssp CHHHHHHTSSHHHHHHHHH---HHHHHHCTTTSCBCCCEEESS------GGGGSSCC-CSSEEEEESSCSTTTTEEEECS
T ss_pred CHHHHHHhcCcHHHHHHHH---HHhcccCCCccceeecccccc------hhHHhhhc-CCceEEecCCCCCCCCeEEEee
Confidence 56788999999653 333 233334333332222111100 11223345 6999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEE
Q 002207 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGV 824 (953)
Q Consensus 745 ~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~v 824 (953)
.+++.. +++.++.+ +..++||+||++. .|++|.+
T Consensus 72 ~~~l~~---~~~~~~~~-------------------~~~~~vqe~I~~~------------------------~dirv~v 105 (206)
T d1i7na2 72 HYDFQD---IASVVALT-------------------QTYATAEPFIDAK------------------------YDIRVQK 105 (206)
T ss_dssp HHHHHH---HHHHHHHH-------------------TCCEEEEECCCEE------------------------EEEEEEE
T ss_pred cchhhh---HHHHHhhc-------------------cCeEEEEEeeccc------------------------ceEEEEE
Confidence 999886 45555554 5789999999864 4999999
Q ss_pred EcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC
Q 002207 825 IGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904 (953)
Q Consensus 825 l~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~ 904 (953)
+++. .....+....+ +|..++..+......+ + +++++.+.++++.+++.|+++|||+++. +
T Consensus 106 ig~~-----~~~~~~~~~~~---~~~~n~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~gvD~~~~~-d 166 (206)
T d1i7na2 106 IGNN-----YKAYMRTSISG---NWKTNTGSAMLEQIAM------S----DRYKLWVDACSEMFGGLDICAVKAVHGK-D 166 (206)
T ss_dssp ETTE-----EEEEEEESSCT---TTSCSCCCSSEEEECC------C----HHHHHHHHHHTTGGGCCSEEEEEEEEET-T
T ss_pred Eecc-----eeEEEeecccc---ccccccccCccccccC------C----hHHHHHHHHHhhhccccceeeEEEEEcC-C
Confidence 9764 22222332222 3455555444332221 2 2456777888899999999999999985 7
Q ss_pred CcEEEEeeCCCCC
Q 002207 905 GEVLIIEVNTVPG 917 (953)
Q Consensus 905 g~~~viEINt~PG 917 (953)
|++||+|||+.|.
T Consensus 167 G~~yvlEvN~~~~ 179 (206)
T d1i7na2 167 GKDYIFEVMDCSM 179 (206)
T ss_dssp SCEEEEEEECTTC
T ss_pred CCEEEEEEcCCCc
Confidence 9999999999774
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.7e-17 Score=166.01 Aligned_cols=176 Identities=22% Similarity=0.225 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..+++++ ++++|||||+|..+.+.+ .+.++.+++ +||+||||+++++|.|+.+|++.+|++++.+..
T Consensus 1 ~~~~~rrla--~~~~Gip~p~~~~v~s~~--------dl~~~~~~i-g~PvVvKP~~g~gs~gv~~v~~~~el~~a~~~~ 69 (206)
T d1kjqa3 1 NREGIRRLA--AEELQLPTSTYRFADSES--------LFREAVADI-GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYA 69 (206)
T ss_dssp SHHHHHHHH--HTTSCCCBCCEEEESSHH--------HHHHHHHHH-CSSEEEEESCC---CCCEEECSGGGHHHHHHHH
T ss_pred ChHHHHHHH--HHHCCCCCCCCeEECCHH--------HHHHHHHHh-CCCEEEeeccCCccCCceEEcCHHHHHHHHHHH
Confidence 788888872 368999999999998643 355667788 699999999999999999999999998754443
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
...... ....+++|+++.+. .++.+.+..+........
T Consensus 70 ~~~~~~------------------~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~ 107 (206)
T d1kjqa3 70 QQGGRA------------------GAGRVIVEGVVKFD------------------------FEITLLTVSAVDGVHFCA 107 (206)
T ss_dssp HHHSGG------------------GCCCEEEEECCCCS------------------------EEEEEEEEEETTEEEECC
T ss_pred Hhhccc------------------Ccceeeeeeccccc------------------------eeeeeeeeecCCCceeec
Confidence 332211 14568888888775 366666655433322222
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~ 915 (953)
........ ........|.+ .+.+...++++.+..+.+++++.|+.++||+.+ ++++||+|||++
T Consensus 108 ~~~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~--~~~~~viEin~R 171 (206)
T d1kjqa3 108 PVGHRQED-----------GDYRESWQPQQ---MSPLALERAQEIARKVVLALGGYGLFGVELFVC--GDEVIFSEVSPR 171 (206)
T ss_dssp CEEEEEET-----------TEEEEEEECCC---CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEE--TTEEEEEEEESS
T ss_pred cceeeecc-----------Cccceeecccc---CCHHHHHHHHHHHHhhhhhhhceeeeccccccc--cCCceEEEeecC
Confidence 22111111 11122234444 478888899999999999999999999999998 467999999999
Q ss_pred CCCCC
Q 002207 916 PGMTP 920 (953)
Q Consensus 916 PGlt~ 920 (953)
|+.+.
T Consensus 172 ~~~~~ 176 (206)
T d1kjqa3 172 PHDTG 176 (206)
T ss_dssp CCGGG
T ss_pred ccccc
Confidence 98754
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2e-17 Score=168.83 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=131.8
Q ss_pred cHHHHHHHH-HHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh
Q 002207 205 DKYDASLEM-SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283 (953)
Q Consensus 205 DK~~~k~~l-~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~ 283 (953)
||..+++++ +++|||||+|..+.+.++ +.+++++ ++||+||||+++++|.|+.+|++.+|+.+.......
T Consensus 1 ~~~~~rrla~~~~Gip~p~~~~v~s~~d----l~~~~~~-----ig~PvVvKP~~g~gs~gv~~v~~~~el~~a~~~~~~ 71 (206)
T d1kjqa3 1 NREGIRRLAAEELQLPTSTYRFADSESL----FREAVAD-----IGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQ 71 (206)
T ss_dssp SHHHHHHHHHTTSCCCBCCEEEESSHHH----HHHHHHH-----HCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHH
T ss_pred ChHHHHHHHHHHCCCCCCCCeEECCHHH----HHHHHHH-----hCCCEEEeeccCCccCCceEEcCHHHHHHHHHHHHh
Confidence 788888876 679999999999987543 3444433 678999999999999999999999886655433221
Q ss_pred --cCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC
Q 002207 284 --EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361 (953)
Q Consensus 284 --~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~ 361 (953)
......+++|+++.+..++.+.+..+.++ . ...... . .++..........|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~--------------------~~~~~~~~~~~~~~~~ 126 (206)
T d1kjqa3 72 GGRAGAGRVIVEGVVKFDFEITLLTVSAVDG---V-HFCAPV-G--------------------HRQEDGDYRESWQPQQ 126 (206)
T ss_dssp HSGGGCCCEEEEECCCCSEEEEEEEEEETTE---E-EECCCE-E--------------------EEEETTEEEEEEECCC
T ss_pred hcccCcceeeeeeccccceeeeeeeeecCCC---c-eeeccc-e--------------------eeeccCccceeecccc
Confidence 12345788899988767777777654221 1 111111 0 0111111133446777
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhC
Q 002207 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVG 441 (953)
Q Consensus 362 l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G 441 (953)
.+.+...++++.+.++..++++.|+.++||+. + ++.+||+|||++||.+.+ + ...++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~-----------------~-~~~~~viEin~R~~~~~~--~--~~~~~~ 184 (206)
T d1kjqa3 127 MSPLALERAQEIARKVVLALGGYGLFGVELFV-----------------C-GDEVIFSEVSPRPHDTGM--V--TLISQD 184 (206)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEE-----------------E-TTEEEEEEEESSCCGGGG--G--HHHHBS
T ss_pred CCHHHHHHHHHHHHhhhhhhhceeeecccccc-----------------c-cCCceEEEeecCcccccc--e--ehhhcC
Confidence 89999999999999999999999999999975 3 445999999999986532 2 334789
Q ss_pred CCHHHHHHHHHHHHhh
Q 002207 442 FSHSNILRTIIGHACS 457 (953)
Q Consensus 442 ~s~~~ll~~li~~a~~ 457 (953)
+|.-++ .++.++.
T Consensus 185 v~~~e~---~ir~~~G 197 (206)
T d1kjqa3 185 LSEFAL---HVRAFLG 197 (206)
T ss_dssp SCHHHH---HHHHHTT
T ss_pred CCHHHH---HHHHHcC
Confidence 985443 4554444
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=5.2e-18 Score=171.08 Aligned_cols=170 Identities=19% Similarity=0.201 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~ 756 (953)
|+.||++ |+++|||||++..+++.+ .+.++.+++ +||+|+||+++++|.||.++.+.++..... ...
T Consensus 1 K~~~~~~---l~~~GipvP~t~~~~~~~--------~~~~~~~~~-g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~-~~~ 67 (192)
T d1uc8a2 1 KWATSVA---LAKAGLPQPKTALATDRE--------EALRLMEAF-GYPVVLKPVIGSWGRLLAXXXXXXXXXXXX-XXK 67 (192)
T ss_dssp HHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-CSSEEEECSBCCBCSHHHHHHHHHC---------
T ss_pred CHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHh-CCCEEEECCcCCcccceeeccccccchhhH-HHH
Confidence 8899999 999999999999886532 345666788 699999999999999998776666655321 111
Q ss_pred HHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc
Q 002207 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836 (953)
Q Consensus 757 ~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p 836 (953)
.+... .....+|||+||+|.+. ++.+.++++ ... .
T Consensus 68 ~~~~~-----------------~~~~~~lvqefi~g~~~-----------------------~~~v~~~~g--~~~---~ 102 (192)
T d1uc8a2 68 EVLGG-----------------FQHQLFYIQEYVEKPGR-----------------------DIRVFVVGE--RAI---A 102 (192)
T ss_dssp ----C-----------------TTTTCEEEEECCCCSSC-----------------------CEEEEEETT--EEE---E
T ss_pred HHHhc-----------------cCCCCEEEEEecCCCCe-----------------------eEEEEEECC--EEE---e
Confidence 11111 12467999999999621 344444443 221 1
Q ss_pred eEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCC
Q 002207 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916 (953)
Q Consensus 837 ~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~P 916 (953)
.. .... ..+..+...... ..+.. .+++ ....+.++.++++ .|+++|||+++ ++++||+|||++|
T Consensus 103 ~~-~~~~---~~~~~~~~~~~~--~~~~~---~~~~----~~~~~~~~~~~~~-~g~~~vD~~~~--~~~~~vlEiN~r~ 166 (192)
T d1uc8a2 103 AI-YRRS---AHWITNTARGGQ--AENCP---LTEE----VARLSVKAAEAVG-GGVVAVDLFES--ERGLLVNEVNHTM 166 (192)
T ss_dssp EE-EC-------------------CEECC---CCHH----HHHHHHHHHHHTT-CSEEEEEEEEE--TTEEEEEEEETTC
T ss_pred EE-Eeee---cccccccccccc--ccccc---chhh----hhhhhhhHHHhhh-ccccceEEEec--CCCEEEEEEcCCC
Confidence 11 1111 111111111111 11222 2232 3334444555554 58999999998 4679999999999
Q ss_pred CCCC
Q 002207 917 GMTP 920 (953)
Q Consensus 917 Glt~ 920 (953)
|++.
T Consensus 167 g~~~ 170 (192)
T d1uc8a2 167 EFKN 170 (192)
T ss_dssp CCTT
T ss_pred chhH
Confidence 9865
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=4.5e-18 Score=171.55 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHH--HHHhHh
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKK--AKGIIL 283 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~--a~~~~~ 283 (953)
|+.|++.|+++|||+|+++.+.+.+. +.+++++ .+||+||||+.+++|.||.++.+.++.... ..+.+.
T Consensus 1 K~~~~~~l~~~GipvP~t~~~~~~~~----~~~~~~~-----~g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~~~~~~~~ 71 (192)
T d1uc8a2 1 KWATSVALAKAGLPQPKTALATDREE----ALRLMEA-----FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLG 71 (192)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHHH-----HCSSEEEECSBCCBCSHHHHHHHHHC------------
T ss_pred CHHHHHHHHHcCcCCCCEEEECCHHH----HHHHHHH-----hCCCEEEECCcCCcccceeeccccccchhhHHHHHHHh
Confidence 89999999999999999998876543 3334332 678999999999999999766554432211 111222
Q ss_pred cCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCC
Q 002207 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363 (953)
Q Consensus 284 ~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~ 363 (953)
...+..+|||+||+| .++++.++..+ +..+... .. ....+..++... ....+...+
T Consensus 72 ~~~~~~~lvqefi~g-~~~~~~v~~~~----g~~~~~~-----~~-----------~~~~~~~~~~~~---~~~~~~~~~ 127 (192)
T d1uc8a2 72 GFQHQLFYIQEYVEK-PGRDIRVFVVG----ERAIAAI-----YR-----------RSAHWITNTARG---GQAENCPLT 127 (192)
T ss_dssp CTTTTCEEEEECCCC-SSCCEEEEEET----TEEEEEE-----EC----------------------------CEECCCC
T ss_pred ccCCCCEEEEEecCC-CCeeEEEEEEC----CEEEeEE-----Ee-----------eecccccccccc---cccccccch
Confidence 234567999999997 55455544321 1222110 00 011112222111 111233344
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCC
Q 002207 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFS 443 (953)
Q Consensus 364 ~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s 443 (953)
++. ...+.++.++++ .|+++|||++ ++ +.+||+|||++||++. +..++|++
T Consensus 128 ~~~----~~~~~~~~~~~~-~g~~~vD~~~-----------------~~-~~~~vlEiN~r~g~~~------~~~~~G~d 178 (192)
T d1uc8a2 128 EEV----ARLSVKAAEAVG-GGVVAVDLFE-----------------SE-RGLLVNEVNHTMEFKN------SVHTTGVD 178 (192)
T ss_dssp HHH----HHHHHHHHHHTT-CSEEEEEEEE-----------------ET-TEEEEEEEETTCCCTT------HHHHHCCC
T ss_pred hhh----hhhhhhHHHhhh-ccccceEEEe-----------------cC-CCEEEEEEcCCCchhH------HHHHHCcC
Confidence 443 344455555554 5899999986 43 4599999999999764 24568998
Q ss_pred HHHHHHHHHHHHhh
Q 002207 444 HSNILRTIIGHACS 457 (953)
Q Consensus 444 ~~~ll~~li~~a~~ 457 (953)
+. ..|++.|+.
T Consensus 179 ~~---~~ii~~a~~ 189 (192)
T d1uc8a2 179 IP---GEILKYAWS 189 (192)
T ss_dssp HH---HHHHHHHHH
T ss_pred HH---HHHHHHHHH
Confidence 54 455555553
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=2.1e-17 Score=172.82 Aligned_cols=180 Identities=14% Similarity=0.014 Sum_probs=112.6
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..||++ |+++|||||+.+ .. .+++ +||+||||+.+++|.||++|++.+++.+ ++
T Consensus 1 DK~~~k~~---l~~~Gip~P~~~--~~---------------~~~i-~~P~IVKP~~g~gs~Gv~~v~~~~e~~~---~~ 56 (235)
T d2r85a2 1 DRNLERKW---LKKAGIRVPEVY--ED---------------PDDI-EKPVIVKPHGAKGGKGYFLAKDPEDFWR---KA 56 (235)
T ss_dssp SHHHHHHH---HHHTTCCCCCBC--SC---------------GGGC-CSCEEEEECC----TTCEEESSHHHHHH---HH
T ss_pred CHHHHHHH---HHHcCCCCchhh--hC---------------HHHc-CCCEEEEECCCCCCCCeEEEechHHHHH---HH
Confidence 89999999 999999999732 10 2457 6999999999999999999999999886 45
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+.+..... ....+.+++|+|++|. |+.+.++.+........
T Consensus 57 ~~~~~~~~--------------~~~~~~~iiee~i~G~-------------------------~~~~~~~~~~~~~~~~v 97 (235)
T d2r85a2 57 EKFLGIKR--------------KEDLKNIQIQEYVLGV-------------------------PVYPHYFYSKVREELEL 97 (235)
T ss_dssp HHHHCCCS--------------GGGCCSEEEEECCCCE-------------------------EEEEEEEEETTTTEEEE
T ss_pred HHHHhhhh--------------hCCCcchhHHhhcCCe-------------------------EEEEEEeecccccceEE
Confidence 55443210 0114679999999997 66666665432211111
Q ss_pred ceEEE---ecCCccccccccc------cCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc-----CCcceEEEEEEEE
Q 002207 836 PSVTV---KESGDILSLEEKF------QGGTGINLTPPPASIMSTEALDKCKQRIELIANAL-----QLEGFSRIDAFVN 901 (953)
Q Consensus 836 p~~~i---~~~~~~~d~~~Ky------~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL-----g~~G~ariDf~v~ 901 (953)
..... .....++.....+ .........|+. .++.+..++++++++++++++ ++.|++++||+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~~~~~G~~~ve~~~~ 175 (235)
T d2r85a2 98 MSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPI--VLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFT 175 (235)
T ss_dssp EEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEEEC--CCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEC
T ss_pred EEeecCCcceeeEEEeccceeEecccCCCCcceeeccCc--ccchhHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEEEc
Confidence 11110 0011111111111 111111122322 146677777888887777776 6889999999999
Q ss_pred cCCCcEEEEeeCCC-CCCCCC
Q 002207 902 VDNGEVLIIEVNTV-PGMTPS 921 (953)
Q Consensus 902 ~~~g~~~viEINt~-PGlt~~ 921 (953)
. +|++||+|||++ .|.++.
T Consensus 176 ~-dg~~~viEiNpR~~Gg~~~ 195 (235)
T d2r85a2 176 P-DLEFVVFEISARIVAGTNI 195 (235)
T ss_dssp T-TSCEEEEEEECSCCGGGGG
T ss_pred C-CCCEEEEEEeCCCCCCCcc
Confidence 5 799999999996 455554
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=3.3e-07 Score=91.46 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=104.8
Q ss_pred CCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCC-
Q 002207 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG- 298 (953)
Q Consensus 220 tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~G- 298 (953)
+|+++..++.+ ++.+++++ .+|+|+||..|+++.||.++.+.+.................+++++|++.
T Consensus 13 ~P~Tlit~~~~----~~~~f~~~------~g~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 82 (192)
T d1gsaa2 13 TPETLVTRNKA----QLKAFWEK------HSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI 82 (192)
T ss_dssp SCCEEEESCHH----HHHHHHHH------HSSEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG
T ss_pred CCCeEEECCHH----HHHHHHHH------cCCeEEEEcCCCeEEEEEEeecCchhhhHHHHHHHhcCccccccccccccc
Confidence 78898876654 34444443 24899999999999999999754332222222222234567888999852
Q ss_pred -CeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHH
Q 002207 299 -GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377 (953)
Q Consensus 299 -g~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~ 377 (953)
++++.+.|++ +. ++. .. +...+ .--+++.....++... |..++++. +++...+.++
T Consensus 83 ~~~d~Rv~vv~----~~--~~~--a~-~r~~~----------~~~~~~~n~~~Gg~~~---~~~~~~~~-~~~a~~~~~~ 139 (192)
T d1gsaa2 83 KDGDKRVLVVD----GE--PVP--YC-LARIP----------QGGETRGNLAAGGRGE---PRPLTESD-WKIARQIGPT 139 (192)
T ss_dssp GGCEEEEEEET----TE--ECS--EE-EEEEC----------CSSCSCCCGGGTCEEE---EEECCHHH-HHHHHHHHHH
T ss_pred cCceeEEEEEC----Cc--ceE--EE-EEecc----------cCCcchhhhhccCcce---eecccHHH-HHHHHHHHHH
Confidence 2899999994 22 111 11 11111 1123455555555332 22344444 4556666666
Q ss_pred HHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCC--CCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI--SGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 378 ~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~--PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
++++|+. |+.||++ ++ |++|||+. || +..+.+.+|++..+.+-..|+.
T Consensus 140 l~~~gl~-~~gVDii--------------------~~--~~~EiNv~s~~g------~~~l~~~~g~~ia~~ivd~l~~ 189 (192)
T d1gsaa2 140 LKEKGLI-FVGLDII--------------------GD--RLTEINVTSPTC------IREIEAEFPVSITGMLMDAIEA 189 (192)
T ss_dssp HHHTTCC-EEEEEEE--------------------TT--EEEEEECSSCCC------HHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHhhcCc-eEEEEee--------------------CC--eEEEEEcCCcHH------HHHHHHHHCCCHHHHHHHHHHH
Confidence 7777886 9999974 12 68999964 45 3456678999987766555544
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=3.3e-06 Score=83.92 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=92.4
Q ss_pred ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCccccccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 773 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~ 773 (953)
+|++...++.+ .+.++.++.| |+|+||..+.++.||.++.+.+..... .+......
T Consensus 13 ~P~Tlit~~~~--------~~~~f~~~~g--~vV~Kpl~gs~G~gv~~~~~~~~~~~~--~~~~~~~~------------ 68 (192)
T d1gsaa2 13 TPETLVTRNKA--------QLKAFWEKHS--DIILKPLDGMGGASIFRVKEGDPNLGV--IAETLTEH------------ 68 (192)
T ss_dssp SCCEEEESCHH--------HHHHHHHHHS--SEEEECSSCCTTTTCEEECTTCTTHHH--HHHHHTTT------------
T ss_pred CCCeEEECCHH--------HHHHHHHHcC--CeEEEEcCCCeEEEEEEeecCchhhhH--HHHHHHhc------------
Confidence 78887765432 2445566663 999999999999999999866554321 22221111
Q ss_pred ccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc-eEEEecCCcccccccc
Q 002207 774 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SVTVKESGDILSLEEK 852 (953)
Q Consensus 774 ~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p-~~~i~~~~~~~d~~~K 852 (953)
....+++++|++.. ...++.+-|+++. ... .++..+..+ ++...
T Consensus 69 ------~~~~~~~q~~~~~~----------------------~~~d~Rv~vv~~~-----~~~a~~r~~~~~~--~~~~n 113 (192)
T d1gsaa2 69 ------GTRYCMAQNYLPAI----------------------KDGDKRVLVVDGE-----PVPYCLARIPQGG--ETRGN 113 (192)
T ss_dssp ------TTSCEEEEECCGGG----------------------GGCEEEEEEETTE-----ECSEEEEEECCSS--CSCCC
T ss_pred ------Cccccccccccccc----------------------cCceeEEEEECCc-----ceEEEEEecccCC--cchhh
Confidence 14668889998742 0138999999865 222 234333222 33344
Q ss_pred ccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC--CCC
Q 002207 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV--PGM 918 (953)
Q Consensus 853 y~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~--PGl 918 (953)
...|.....++. + +..+++...+.++++++|+. ++.||++ . + |++|||.. ||+
T Consensus 114 ~~~Gg~~~~~~~-----~-~~~~~~a~~~~~~l~~~gl~-~~gVDii-~---~--~~~EiNv~s~~g~ 168 (192)
T d1gsaa2 114 LAAGGRGEPRPL-----T-ESDWKIARQIGPTLKEKGLI-FVGLDII-G---D--RLTEINVTSPTCI 168 (192)
T ss_dssp GGGTCEEEEEEC-----C-HHHHHHHHHHHHHHHHTTCC-EEEEEEE-T---T--EEEEEECSSCCCH
T ss_pred hhccCcceeecc-----c-HHHHHHHHHHHHHHHhhcCc-eEEEEee-C---C--eEEEEEcCCcHHH
Confidence 444443333332 2 33455666666667777886 8999975 1 3 78899854 564
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=3e-07 Score=83.15 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=79.7
Q ss_pred CcCeEEEEec-----CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICG-----GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~G-----G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||.. |++.|+|++ +.+++++|++.||+++.+.-++ +...++....-.+|.+++....
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~---~~~a~~aLk~~g~~~IliN~NP---------eTVstd~d~aD~lYfeplt~e~ 70 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYC---CVHASLALREDGYETIMVNCNP---------ETVSTDYDTSDRLYFEPVTLED 70 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHH---HHHHHHHHHHTTCEEEEECCCT---------TSSTTSTTSSSEEECCCCSHHH
T ss_pred CCCEEEEECCCcCcccccchhhHH---HHHHHHHHHhcCCeEEEEecCh---------hhhhcChhhcCceEEccCCHHH
Confidence 3468999976 668999996 8899999999999998765333 2233221111134555544211
Q ss_pred CcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccH
Q 002207 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDK 206 (953)
Q Consensus 151 ~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK 206 (953)
....++ .++||.|++.+.|+.+-+-. .-|+..|++.+|+++.+...|.|+
T Consensus 71 --v~~Ii~--~E~p~~ii~~~GGQtalnla--~~L~~~gv~iLGt~~~~Id~aEDR 120 (121)
T d1a9xa4 71 --VLEIVR--IEKPKGVIVQYGGQTPLKLA--RALEAAGVPVIGTSPDAIDRAEDR 120 (121)
T ss_dssp --HHHHHH--HHCCSEEECSSSTHHHHTTH--HHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred --HHHHHH--HhCCCEEEeehhhhhHHHHH--HHHHHcCCcEECCCHHHHHHHHCc
Confidence 112222 45899999999999886643 457899999999999999999987
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=2.9e-07 Score=84.35 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=77.4
Q ss_pred CcCeEEEEec-----CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICG-----GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~G-----G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
..+||+||.+ |++.|+|++ +.+++++|++.||+++.+. +|. +.+.++....-.+|.++++...
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~---~~~a~~alke~g~~~iliN--~NP-------~TVstd~d~aD~lYfePlt~e~ 73 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVINVN--SNP-------ATIMTDPEMADATYIEPIHWEV 73 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHH---HHHHHHHHHHHTCEEEEEC--SCT-------TCGGGCGGGSSEEECSCCCHHH
T ss_pred CCCEEEEECCCcCcccccchhHHH---HHHHHHHHHHcCCeEEEec--Cch-------HhhhcChhhcceeeeecCCHHH
Confidence 3479999976 568999997 8899999999999988664 432 2222221111124455544211
Q ss_pred CcchhHHHhhccCcCEEEEcCCCCCCCchHHH----HHHHcCCccEECCCHHHHHHh
Q 002207 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQ----EVLEKYNVPFVGTGSRACRQA 203 (953)
Q Consensus 151 ~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq----~lle~~gIpyvGs~~~a~~i~ 203 (953)
..++++ .++||.|++.+.|+.+-+..++ +.|+.+|++.+|+++.+...|
T Consensus 74 --v~~Ii~--~E~pd~il~~~GGQtalnla~~L~~~giL~~~~v~iLGt~~~sId~a 126 (127)
T d1a9xa3 74 --VRKIIE--KERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKA 126 (127)
T ss_dssp --HHHHHH--HHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred --HHHHHH--HhCcCCeEEEeeeehHhHHHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence 112222 4589999999999998766543 678999999999999988765
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00019 Score=73.28 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=70.6
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-cEEEeeC--CCCC--ceeEEEeCCHHHHHHHHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPT--RAGS--SIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~--~~gs--S~GV~~v~~~~el~~~a~~ 280 (953)
-+.+|++|+++|||+|++.++.+.++. .+... +++| |||+|.. .++. .-||.++.+.+|+.+.+.+
T Consensus 5 E~eaK~lL~~yGIpvp~~~~a~s~~ea----~~~a~-----~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~~a~~ 75 (238)
T d2nu7b2 5 EYQAKQLFARYGLPAPVGYACTTPREA----EEAAS-----KIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAEN 75 (238)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSHHHH----HHHHH-----HHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHH----HHHHH-----HhCCCcEEEEEeecccccccceEEEeccccHHHHHHHHH
Confidence 478899999999999999998876542 22222 2564 9999963 2222 2388889999998878777
Q ss_pred hHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 281 IILEG-----------IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
.+... .-..++||+.+++++|+-+++..+..
T Consensus 76 ~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~ 117 (238)
T d2nu7b2 76 WLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRS 117 (238)
T ss_dssp HTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred HhCcceeeeccccCCcccceeeecceeecccceEEEEEEecc
Confidence 65310 12368999999877999999987643
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.08 E-value=0.00079 Score=68.83 Aligned_cols=96 Identities=19% Similarity=0.094 Sum_probs=69.5
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-cEEEeeCC--CCCc---------eeEEEeCCHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR--AGSS---------IGVTVAYGVID 273 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~~--~gsS---------~GV~~v~~~~e 273 (953)
-+.+|++|+++|||+|++.++.+.++. .+.+++ ++| |+|+|+-- ++.| -||..+.|.+|
T Consensus 6 E~eaK~lL~~yGIpvp~~~~a~s~~ea----~~~a~~-----ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee 76 (246)
T d1eucb2 6 EYQSKKLMSDNGVKVQRFFVADTANEA----LEAAKR-----LNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEV 76 (246)
T ss_dssp HHHHHHHHHTTTCCCCCEEEESSHHHH----HHHHHH-----HTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHH
T ss_pred HHHHHHHHHHcCCCCCCeeEECCHHHH----HHHHHH-----hCCCeEEEEEeeccccccccccccCCcceEEEecChhH
Confidence 688999999999999999998876532 222222 454 89999842 2211 36777899999
Q ss_pred HHHHHHHhHhc-----C------CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 274 SLKKAKGIILE-----G------IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 274 l~~~a~~~~~~-----~------~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+.+.+.+.+.. . .-..++||+.+.+++|+-+++..+.
T Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~ 124 (246)
T d1eucb2 77 VGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 124 (246)
T ss_dssp HHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEG
T ss_pred HHHHhhhhhcchhhhhhccccccccccceehhcccccceeeeeeeecc
Confidence 88887665421 0 1357899999988899999998753
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00017 Score=65.65 Aligned_cols=54 Identities=22% Similarity=0.216 Sum_probs=40.1
Q ss_pred ccChHHHHHH-hhcCCcEEEEecCCCCCCccHHH----HHHHHcCCCEeCCChHHHHHh
Q 002207 621 RHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQ----SLLEAEGVPYTGPGVMASKTC 674 (953)
Q Consensus 621 ~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq----~llE~~gIPy~G~~~~as~l~ 674 (953)
+++.+.+.+. .+|++|.|++.+.|+.+-+-.++ +.|+.+|++..|.++.+...+
T Consensus 68 Plt~e~v~~Ii~~E~pd~il~~~GGQtalnla~~L~~~giL~~~~v~iLGt~~~sId~a 126 (127)
T d1a9xa3 68 PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKA 126 (127)
T ss_dssp CCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred cCCHHHHHHHHHHhCcCCeEEEeeeehHhHHHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence 3445554444 56889999999999877655443 678999999999999877543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00029 Score=63.26 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=42.8
Q ss_pred ccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcCh
Q 002207 621 RHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677 (953)
Q Consensus 621 ~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK 677 (953)
+++.+.+.+. .+|++|.|++.+.|+.+-+ +..-|+..|++..|.++.+...+.|+
T Consensus 65 plt~e~v~~Ii~~E~p~~ii~~~GGQtaln--la~~L~~~gv~iLGt~~~~Id~aEDR 120 (121)
T d1a9xa4 65 PVTLEDVLEIVRIEKPKGVIVQYGGQTPLK--LARALEAAGVPVIGTSPDAIDRAEDR 120 (121)
T ss_dssp CCSHHHHHHHHHHHCCSEEECSSSTHHHHT--THHHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred cCCHHHHHHHHHHhCCCEEEeehhhhhHHH--HHHHHHHcCCcEECCCHHHHHHHHCc
Confidence 3444444443 5688999999999987764 55568999999999999999888875
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.0057 Score=61.90 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC--CCCC--CcceEEeCCcccHHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA--RDGC--STGVARLCCAEDLTVYV 752 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~--~~gs--S~GV~~v~~~~eL~~~~ 752 (953)
-+..|++ |+++|||||++.++++.+ .+.++..++|.+|+++|.. .++. .-||..+.+.++...
T Consensus 5 E~eaK~l---L~~yGIpvp~~~~a~s~~--------ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~-- 71 (238)
T d2nu7b2 5 EYQAKQL---FARYGLPAPVGYACTTPR--------EAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRA-- 71 (238)
T ss_dssp HHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHH--
T ss_pred HHHHHHH---HHHcCCCCCCceEECCHH--------HHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHH--
Confidence 4567888 999999999999987643 2445667884249999963 2222 247888777666553
Q ss_pred HHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 753 ~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+..+.+.. .......+ .+...-..++||+.+++. +|+-+++..+.
T Consensus 72 -~a~~~~~~---~~~~~~~~---~~g~~v~~vlve~~~~~~------------------------~E~~lg~~~D~ 116 (238)
T d2nu7b2 72 -FAENWLGK---RLVTYQTD---ANGQPVNQILVEAATDIA------------------------KELYLGAVVDR 116 (238)
T ss_dssp -HHHHHTTS---EECCTTSC---TTCEECCCEEEEECCCEE------------------------EEEEEEEEEET
T ss_pred -HHHHHhCc---ceeeeccc---cCCcccceeeecceeecc------------------------cceEEEEEEec
Confidence 33333211 00000000 000013568999999865 58888887665
|
| >d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Thermococcus kodakaraensis [TaxId: 311400]
Probab=96.37 E-value=0.013 Score=56.50 Aligned_cols=196 Identities=11% Similarity=0.047 Sum_probs=103.7
Q ss_pred HHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCC
Q 002207 208 DASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID 287 (953)
Q Consensus 208 ~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~ 287 (953)
..+++|+++|||.|+.+ ...+. +...|||||-....++.|-+++.+.++..... ...
T Consensus 2 l~~k~Le~AGip~Pk~~--~Pedi---------------~~d~~ViVK~~gAkggrGyFia~~~e~~~~~~------~~~ 58 (213)
T d2pbza2 2 LQDKALEGAGIPRVEVV--EPEDA---------------KPDELYFVRIEGPRGGSGHFIVEGSELEERLS------TLE 58 (213)
T ss_dssp HHHHHHHHHTCCBCCBC--CSCCC---------------CSSCCEEEECCC------------EECSCCCC---------
T ss_pred hhHHHHHhCCCCCCccc--Ccccc---------------CCCceEEEEeccccCcceEEEEcCHHHHHhhh------hcc
Confidence 35689999999999743 22210 13569999999888889999998865422111 124
Q ss_pred CcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHH
Q 002207 288 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367 (953)
Q Consensus 288 ~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~ 367 (953)
.++.|||||-| .-+....+-..-.+ ..- +.-.....+. .+++....++..+ .-..-+.|+.+-+.+.
T Consensus 59 e~~~IeEyv~G-~~~~~~yFySpi~~--~lE-llg~DrR~~~--------~dg~~r~pa~~~~-~~v~Gn~p~viRESLL 125 (213)
T d2pbza2 59 EPYRVERFIPG-VYLYVHFFYSPILE--RLE-LLGVDERVLI--------ADGNARWPVKPLP-YTIVGNRAIALRESLL 125 (213)
T ss_dssp -CCEEEECCCS-CEEEEEEEEETTTT--EEE-EEEEEEEEET--------TCSSSSSCCSCCC-CCEEEEEECEECGGGH
T ss_pred cceEEEEEecc-ceeeeeeecccccc--cee-eEeeeeeeec--------ccccccccccCCC-eEEEcCccceehHHHH
Confidence 56899999998 66666655321111 111 1111122211 1223222233222 1134457887777777
Q ss_pred HHHHHHHHHHHHH---h---CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCC-CCCCC-cchHHHHHHH
Q 002207 368 NSIREGASLLFQR---L---GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQ-TSFLFQQASK 439 (953)
Q Consensus 368 ~~i~~~a~~~~~a---L---g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~-~S~~p~~a~~ 439 (953)
.++-+++.+..++ + |+.|....+.++ | .++++.||-++ +|-|. +|-|..+.-.
T Consensus 126 ~~vf~~ge~fV~a~k~l~~pG~iGPFcLq~~~-----------------d--~~~~vfevS~RI~gGtN~gsPYs~l~~~ 186 (213)
T d2pbza2 126 PQLYDYGLAFVRTMRELEPPGVIGPFALHFAY-----------------D--GSFKAIGIASRIDGGSNADHWYSELYWG 186 (213)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCSEEEEEEEC-----------------S--SSCEEEEEESSBCSGGGSCCCCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccceEEEEE-----------------c--CCEEEEEEeeeecCCCCCCCCCchhhcC
Confidence 7777766665554 3 778999999765 3 35888999874 34443 3444444334
Q ss_pred hCCCHHHHHHHHHHHHhhh
Q 002207 440 VGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 440 ~G~s~~~ll~~li~~a~~r 458 (953)
..+|...=|.+=|..|.+.
T Consensus 187 epmS~GrRIA~EIk~A~e~ 205 (213)
T d2pbza2 187 ERLSMGRRIARELRLAEEE 205 (213)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHc
Confidence 5677777777777877765
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.19 E-value=0.0094 Score=60.47 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC--CCCC---------cceEEeCCc
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR--DGCS---------TGVARLCCA 745 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~--~gsS---------~GV~~v~~~ 745 (953)
-+..|++ |+++|||+|++.++++.+ .+.+..+++|.+|+|+|+-- ++.| -||..+.|.
T Consensus 6 E~eaK~l---L~~yGIpvp~~~~a~s~~--------ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ 74 (246)
T d1eucb2 6 EYQSKKL---MSDNGVKVQRFFVADTAN--------EALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 74 (246)
T ss_dssp HHHHHHH---HHTTTCCCCCEEEESSHH--------HHHHHHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCH
T ss_pred HHHHHHH---HHHcCCCCCCeeEECCHH--------HHHHHHHHhCCCeEEEEEeeccccccccccccCCcceEEEecCh
Confidence 6788888 999999999999987643 23445567843589999731 1111 366677777
Q ss_pred ccHHH
Q 002207 746 EDLTV 750 (953)
Q Consensus 746 ~eL~~ 750 (953)
+++.+
T Consensus 75 ee~~~ 79 (246)
T d1eucb2 75 EVVGQ 79 (246)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77654
|
| >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.98 E-value=0.024 Score=50.07 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=70.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc-cccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA-QGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (953)
+||+|-.=| || |..++++.++.|++.+.++-+.|....+...+ |..+.+.... ........+
T Consensus 3 kkvLIANRG-----Ei----A~Ri~ra~~elgi~tvav~s~~D~~s~~~~~a--------d~~~~ig~~~~~sYln~~~I 65 (114)
T d1ulza2 3 NKVLVANRG-----EI----AVRIIRACKELGIPTVAIYNEVESTARHVKLA--------DEAYMIGTDPLDTYLNKQRI 65 (114)
T ss_dssp SSEEECCCH-----HH----HHHHHHHHHHHTCCEEEEECGGGTTCHHHHHS--------SEEEECCSSTTHHHHCHHHH
T ss_pred ceeeEecCC-----HH----HHHHHHHHHHhcCCeEEEecchhhcCcchhhc--------ceeeecCCChhhhhhcHHHH
Confidence 367776522 33 88899999999999999886655433221111 1111111000 000011111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhcc
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFD 205 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~D 205 (953)
++. ...++|.|+|.. |...||..+...++..||-|+|+++.++....|
T Consensus 66 i~~A~~~~~daihPGy-GFLSEna~Fa~~~~~~gi~FIGP~~~~i~~mGD 114 (114)
T d1ulza2 66 INLALEVGADAIHPGY-GFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114 (114)
T ss_dssp HHHHHHTTCCEEECCS-STTTTCHHHHHHHHHTTCEESSSCHHHHHHHHS
T ss_pred HHHHHHhCCCeEecch-hhhhhHHHHHHHHHHCCCEEECcCHHHHHHhCC
Confidence 211 234799999987 788899999999999999999999999887655
|
| >d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Thermococcus kodakaraensis [TaxId: 311400]
Probab=93.46 E-value=0.23 Score=47.51 Aligned_cols=161 Identities=14% Similarity=0.006 Sum_probs=75.8
Q ss_pred HHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCC
Q 002207 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNS 766 (953)
Q Consensus 687 l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~ 766 (953)
|+++|||.|+.. .+.+. +. .-|++||-....+++|-..+.+.++.+.. ..
T Consensus 7 Le~AGip~Pk~~--~Pedi--------------~~-d~~ViVK~~gAkggrGyFia~~~e~~~~~----~~--------- 56 (213)
T d2pbza2 7 LEGAGIPRVEVV--EPEDA--------------KP-DELYFVRIEGPRGGSGHFIVEGSELEERL----ST--------- 56 (213)
T ss_dssp HHHHTCCBCCBC--CSCCC--------------CS-SCCEEEECCC------------EECSCCC----C----------
T ss_pred HHhCCCCCCccc--Ccccc--------------CC-CceEEEEeccccCcceEEEEcCHHHHHhh----hh---------
Confidence 899999999743 33331 11 35899999988888999999886654320 00
Q ss_pred cccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcc
Q 002207 767 FSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 846 (953)
Q Consensus 767 ~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~ 846 (953)
..+.+.|||||-|..+.+ .+--+-+.+ ....+.-..+.....++
T Consensus 57 -------------~~e~~~IeEyv~G~~~~~---------------------~yFySpi~~--~lEllg~DrR~~~~dg~ 100 (213)
T d2pbza2 57 -------------LEEPYRVERFIPGVYLYV---------------------HFFYSPILE--RLELLGVDERVLIADGN 100 (213)
T ss_dssp ----------------CCEEEECCCSCEEEE---------------------EEEEETTTT--EEEEEEEEEEEETTCSS
T ss_pred -------------cccceEEEEEeccceeee---------------------eeecccccc--ceeeEeeeeeeeccccc
Confidence 135689999999974433 111111110 00000001122112222
Q ss_pred ccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHH---Hc---CCcceEEEEEEEEcCCCcEEEEeeCC-CCCCC
Q 002207 847 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN---AL---QLEGFSRIDAFVNVDNGEVLIIEVNT-VPGMT 919 (953)
Q Consensus 847 ~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~---aL---g~~G~ariDf~v~~~~g~~~viEINt-~PGlt 919 (953)
....++.+.-...-..|+. +-+.++.++-+++.+..+ .+ |+-|..-++..++ .++++.||-+ ++|=|
T Consensus 101 ~r~pa~~~~~~v~Gn~p~v---iRESLL~~vf~~ge~fV~a~k~l~~pG~iGPFcLq~~~d---~~~~vfevS~RI~gGt 174 (213)
T d2pbza2 101 ARWPVKPLPYTIVGNRAIA---LRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALHFAYD---GSFKAIGIASRIDGGS 174 (213)
T ss_dssp SSSCCSCCCCCEEEEEECE---ECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEEEECS---SSCEEEEEESSBCSGG
T ss_pred ccccccCCCeEEEcCccce---ehHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEEEEc---CCEEEEEEeeeecCCC
Confidence 2222222111111123443 346666676666665553 33 6778888998775 4689999975 44444
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.1 Score=45.80 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=67.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|-.=| || |..|++++++.|++.+.+|-+.|....+... .|..+.+.+.. ........
T Consensus 3 ~kvLIANRG-----ei----A~Ri~ra~~elgi~tvavys~~D~~~~h~~~--------ade~v~lg~~~~~~sYl~~~~ 65 (114)
T d2j9ga2 3 DKIVIANRG-----EI----ALRILRACKELGIKTVAVHSSADRDLKHVLL--------ADETVCIGPAPSVKSYLNIPA 65 (114)
T ss_dssp SEEEECCCH-----HH----HHHHHHHHHHHTCEEEEEEEGGGTTCHHHHH--------SSEEEEEECSSGGGTTTCHHH
T ss_pred ceeeEecCC-----HH----HHHHHHHHHHhCCceEEEeccccccccceec--------CCceeecCCCchhhhhcCHHH
Confidence 367776522 33 7789999999999999998766643322111 11111111100 01111122
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHH
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i 202 (953)
+++. ....+|.|.|.. |...||..+...++..||-|+|+++.++..
T Consensus 66 Ii~~A~~~~~dAiHPGy-GFLSEn~~Fa~~~~~agi~FIGP~~~~i~~ 112 (114)
T d2j9ga2 66 IISAAEITGAVAIHPGY-GFLSENANFAEQVERSGFIFIGPKAETIRL 112 (114)
T ss_dssp HHHHHHHHTCSEEECCS-STTTTCHHHHHHHHHTTCEESSCCHHHHHH
T ss_pred HHHHHHHhCCceeecch-hhhhhhHHHHHHHHHCCCEEECcCHHHHHH
Confidence 2221 234799999987 678899999999999999999999998765
|
| >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: Lysine biosynthesis enzyme LysX, N-terminal domain domain: Lysine biosynthesis enzyme LysX, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.30 E-value=0.15 Score=42.67 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhhccCcCEEEEcCCCCCC
Q 002207 97 SARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176 (953)
Q Consensus 97 Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~G 176 (953)
.-+.+.+++++.||++..++...- ++. +..... . ...+|+|+|-.- ..+
T Consensus 12 eEk~L~~a~~~rG~~~~~id~~~~--~~~-----------------l~~~~~------~-----~~~~D~Vi~R~~-s~~ 60 (88)
T d1uc8a1 12 DERMLFERAEALGLPYKKVYVPAL--PMV-----------------LGERPK------E-----LEGVTVALERCV-SQS 60 (88)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGGGC--CEE-----------------TTBCCG------G-----GTTCCEEEECCS-SHH
T ss_pred HHHHHHHHHHHCCCeEEEEehhhc--EEE-----------------ccCCCC------c-----cCCCCEEEEecc-ccc
Confidence 367789999999999987753221 111 110000 0 125899999862 223
Q ss_pred CchHHHHHHHcCCccEECCCHHHHHHhcc
Q 002207 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFD 205 (953)
Q Consensus 177 Edg~iq~lle~~gIpyvGs~~~a~~i~~D 205 (953)
.--.+-..||.+|+|.+ +++.++..|.|
T Consensus 61 ~~~~v~~~lE~~Gv~v~-Ns~~aI~~c~D 88 (88)
T d1uc8a1 61 RGLAAARYLTALGIPVV-NRPEVIEACGD 88 (88)
T ss_dssp HHHHHHHHHHHTTCCEE-SCHHHHHHHHB
T ss_pred hHHHHHHHHHHCCCcEe-ccHHHHHhhCC
Confidence 22357789999999987 67899998876
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.65 E-value=1.5 Score=37.86 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=58.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
..||+||.||+= |+-...+.++.||+++.++-+.+. |+....+. + ....+.....+
T Consensus 11 ~~kigIlGgGQL---------~rMla~aA~~lG~~v~v~d~~~~~------PA~~va~~-----~----i~~~~~d~~~l 66 (111)
T d1kjqa2 11 ATRVMLLGSGEL---------GKEVAIECQRLGVEVIAVDRYADA------PAMHVAHR-----S----HVINMLDGDAL 66 (111)
T ss_dssp CCEEEEESCSHH---------HHHHHHHHHTTTCEEEEEESSTTC------GGGGGSSE-----E----EECCTTCHHHH
T ss_pred CCEEEEEeCCHH---------HHHHHHHHHHCCCEEEEEcCCCCC------chhhcCCe-----E----EECCCCCHHHH
Confidence 358999999964 888999999999999877654442 22111000 0 00000001111
Q ss_pred HHhh-ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhc
Q 002207 157 AEHL-AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAF 204 (953)
Q Consensus 157 ~~~~-~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~ 204 (953)
.+.. ..++|+|-.-+.- -+-..-..||..|+++ -+++.+.++||
T Consensus 67 ~~~~~~~~~DviT~E~En---I~~~~L~~le~~g~~v-~Ps~~al~it~ 111 (111)
T d1kjqa2 67 RRVVELEKPHYIVPEIEA---IATDMLIQLEEEGLNV-VPCARATKLTM 111 (111)
T ss_dssp HHHHHHHCCSEEEECSSC---SCHHHHHHHHHTTCEE-SSCHHHHHHHH
T ss_pred HHHHHhhCCceEEEEecC---cCHHHHHHHHHCCCeE-CCCHHHHHhhC
Confidence 1111 1368999766631 1223345668889885 57899999987
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.32 E-value=2.6 Score=39.91 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
+||+ |+||... -|+.+++.|.+.||+|..+.
T Consensus 4 kkIl-V~GatG~-------iG~~v~~~Ll~~g~~V~~~~ 34 (205)
T d1hdoa_ 4 KKIA-IFGATGQ-------TGLTTLAQAVQAGYEVTVLV 34 (205)
T ss_dssp CEEE-EESTTSH-------HHHHHHHHHHHTTCEEEEEE
T ss_pred CEEE-EECCCCH-------HHHHHHHHHHHCcCEEEEEE
Confidence 4777 4555542 39999999999999998664
|