Citrus Sinensis ID: 002304

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------94
MEEQIAQNCEQSLSVSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG
cHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccHHHHHHcccccccccccEEEcccccEEEEEEEEEEccccccEEEEEEEEccccEEEEEcccccccccccccEEEEEEcccccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcccc
ccHHHHHHccccccccccccHHHHHHHHHHHEccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHcHcHccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEEEEEEEcccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEcccEEEEEEEcccHcccccccEEEEEEEEEccccccEEEEEEEEEEEEcccccccccccccccccEEEEccccEEEEEEEEcc
MEEQIAQNCEQSLSVSKRHSLRALSSIRslinnpntsnsTLSSLLETLTRSlqltdsdsltrhHELTLLAglslrhphfsplisnslrsnsllfssySPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNaerfnvrpHLLFTVClgltkdpypYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIdeknridcsdVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLgatkekkfhslgaaecFEISASAaagtfvhgfedEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLenlkiypqdeadVFSVLFFIGRSHGNFAACIIKEVCqeiepdsddklgfDNARVAAFLVLAISVplsceqnvrsippqIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRlsnfseanfkgedtplheaksddpncttevsigadihmqkssdeasksrswiHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFkaesrgfdgALLFSLQYFKVLKLLTKGWeqfvpaknihhyeQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLhqqgstepsnFVTAVKKSLFEINishtsyrpslFNQLLNSFSLSQLVFHGRLEHvhaelgvpdnssenpvifvsglpvsipfeITLYNISSVNRLWLRMTMSDETTQFVFldsnllggckdakkftyvapfyrtpkasftLRVCIGMECLFEdihsvkgnggpkRALAYLCNEKEVYFSRVSRG
MEEQIAQNCEQSLSVSKRHSLRALSSirslinnpntsnSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACideknridcsdVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILklvktpkleFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGedtplheaksddpnCTTEVSIGadihmqkssdeasksrswihgklketatsrcqlEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG
MEEQIAQNCEQSLSVSKRHslralssirslinnpntsnstlsslletltrslqltDSDSLTRHHELTLLAGLSLRHPHFsplisnslrsnsllfssysprlaaaaalaVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKeeelhvlelmlvSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPslfnqllnsfslsqlVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG
*************************************************************RHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNF**********************************************************RCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYF******
*********************RALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIA****KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIE******LGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSL******************LHEAKSDDPN***********HMQKSSDEASKSRSWIH****************DEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKS*********SYRPSLFNQLLNSFSLSQLVFHGRLEHVHAE*G******ENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFED***********RALAYLCNEKEVYFSRVSR*
*******************SLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIH************SWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG
****IAQNCEQSLSVSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHS*GAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEQIAQNCEQSLSVSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAAAALAVISDHTVDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKASFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query939 2.2.26 [Sep-21-2011]
Q68F70969 Integrator complex subuni N/A no 0.320 0.310 0.307 2e-27
Q8CIM8964 Integrator complex subuni yes no 0.298 0.290 0.323 8e-26
Q96HW7963 Integrator complex subuni yes no 0.298 0.290 0.323 1e-25
Q2T9F4439 Integrator complex subuni no no 0.252 0.539 0.304 3e-22
Q96LV5439 Integrator complex subuni no no 0.252 0.539 0.308 4e-22
Q54LH5 1233 Integrator complex subuni yes no 0.192 0.146 0.282 7e-16
>sp|Q68F70|INT4_XENLA Integrator complex subunit 4 OS=Xenopus laevis GN=ints4 PE=2 SV=1 Back     alignment and function desciption
 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 159 DPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVR---VVSE 215
           D  P VR AA+  ++ L +      + L Q    +A +LL D  + VR AAV    V+S+
Sbjct: 208 DQDPRVRTAAIKAMLQLHER----GLKLQQAMYNQACKLLTDDYEQVRSAAVELSWVLSQ 263

Query: 216 -WGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTL 274
            + + ++        I   D  F ++C M+ D    VRV+A   LG +  +S   L QTL
Sbjct: 264 LYSESIVPIPSSNEEIRLVDDAFGKVCHMVSDGSWVVRVQACKLLGSMLQVSPHFLEQTL 323

Query: 275 SKKVLGATKEKKFHSLGAAECF---EISA----------------------SAAAGTFVH 309
            KK++   + K+     A E +   E S+                      S A G FVH
Sbjct: 324 DKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWGDDAPKEELDTGAVNLIDSGACGAFVH 383

Query: 310 GFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTC 369
           G EDE YEVR +A  SL  L   S  FA + L+ LVDM ND+   VRLQ++ TM  +   
Sbjct: 384 GLEDEMYEVRIAAVESLCLLARSSAPFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKI--S 441

Query: 370 EHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQD 429
           +++ L +  +   L  L D S  +R A  ++L        E  +L +  LL+NL  YP D
Sbjct: 442 DNITLREDQLDTVLAVLEDKSRDIREALHELLCCTNVSTKECIQLALVELLKNLSKYPTD 501

Query: 430 EADVFSVLFFIGRSHGNFAACIIKEVC------QEIEPDSDD 465
              ++  L F+G  H      ++ E+          EPD DD
Sbjct: 502 RESIWKCLKFLGSRHPTLVLSLVPELLSTHPFFDTPEPDMDD 543
Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Xenopus laevis (taxid: 8355)
>sp|Q8CIM8|INT4_MOUSE Integrator complex subunit 4 OS=Mus musculus GN=Ints4 PE=2 SV=1 Back     alignment and function description
>sp|Q96HW7|INT4_HUMAN Integrator complex subunit 4 OS=Homo sapiens GN=INTS4 PE=1 SV=2 Back     alignment and function description
>sp|Q2T9F4|IN4L2_HUMAN Integrator complex subunit 4-like protein 2 OS=Homo sapiens GN=INTS4L2 PE=2 SV=1 Back     alignment and function description
>sp|Q96LV5|IN4L1_HUMAN Integrator complex subunit 4-like protein 1 OS=Homo sapiens GN=INTS4L1 PE=2 SV=1 Back     alignment and function description
>sp|Q54LH5|INT4_DICDI Integrator complex subunit 4 homolog OS=Dictyostelium discoideum GN=ints4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query939
3594812641007 PREDICTED: uncharacterized protein LOC10 0.984 0.917 0.557 0.0
224139272949 predicted protein [Populus trichocarpa] 0.992 0.982 0.544 0.0
255571481890 conserved hypothetical protein [Ricinus 0.941 0.993 0.539 0.0
357506205906 Integrator complex subunit [Medicago tru 0.941 0.975 0.475 0.0
449459142815 PREDICTED: uncharacterized protein LOC10 0.849 0.979 0.5 0.0
297829404932 binding protein [Arabidopsis lyrata subs 0.954 0.961 0.444 0.0
22330923936 integrator complex subunit 4 [Arabidopsi 0.954 0.957 0.442 0.0
297735606701 unnamed protein product [Vitis vinifera] 0.701 0.940 0.548 0.0
12322719768 hypothetical protein; 82071-85833 [Arabi 0.636 0.778 0.408 1e-124
242036103668 hypothetical protein SORBIDRAFT_01g03898 0.705 0.991 0.394 1e-115
>gi|359481264|ref|XP_002264741.2| PREDICTED: uncharacterized protein LOC100249976 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/966 (55%), Positives = 682/966 (70%), Gaps = 42/966 (4%)

Query: 1   MEEQIAQNCEQSLSVS---KRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDS 57
           ME+ +   CE  LS+S   KR +LRAL+S RSLI N +TS+ST+S+L ETLTR LQLT +
Sbjct: 1   MEQHLGSVCECILSLSTNDKRLNLRALASARSLIINSSTSDSTISALFETLTRFLQLT-T 59

Query: 58  DSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSLLFSSYSPRLAAA--AALAVISDHT- 114
           +    HH L LL+ ++  H   S L+ +S+RS   L  S S RL+A   A L+ I++H  
Sbjct: 60  EPRALHHTLKLLSDIAFHHSRLSGLVFHSVRS--YLLRSDSTRLSAESLAVLSSIAEHDR 117

Query: 115 --------VDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVRE 166
                   +DDRFFVSLCF  SVSVR W L NA RF +RP++L TV LG TKDPYPYVR 
Sbjct: 118 SLASAMDELDDRFFVSLCFGPSVSVRSWFLSNAFRFPIRPYVLLTVMLGFTKDPYPYVRR 177

Query: 167 AALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDE 226
            AL+GLV L K  V ED  +I+GC CRAVELL D ED VRCAAV  VSEWGKML+A + E
Sbjct: 178 VALDGLVGLSKSSVIEDCGVIEGCYCRAVELLGDAEDSVRCAAVHAVSEWGKMLVASVQE 237

Query: 227 KNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKK 286
            N+   SD VF++LCSM+RDM MEVRV AF+ALGK+G++SE +LLQTLSK+VLG TKEKK
Sbjct: 238 MNKRYWSDAVFVRLCSMVRDMSMEVRVAAFDALGKIGVVSEDILLQTLSKRVLGITKEKK 297

Query: 287 --------FHSLGA--AECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKF 336
                     SLG    + F+I A  AAG FVHG EDEFYEVR SAC SL +L ILS KF
Sbjct: 298 PLGQCSAKRKSLGQYIPKHFDIQACVAAGAFVHGLEDEFYEVRWSACHSLHTLTILSAKF 357

Query: 337 AGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCA 396
           AGEALNLL+D+LNDDS+ VRL+ALETMH M TC+HL +++ HMHMFLGTLVDNS  +R  
Sbjct: 358 AGEALNLLMDVLNDDSLNVRLRALETMHHMATCDHLKVQETHMHMFLGTLVDNSTFIRST 417

Query: 397 ARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVC 456
           ARKIL+L+K   L+ F+  IDGLLENL++YPQDEAD+ SVLF IGR+HGNF  CIIK+  
Sbjct: 418 ARKILRLMKLHDLKMFQSSIDGLLENLEVYPQDEADILSVLFDIGRNHGNFVVCIIKKFS 477

Query: 457 QEIEPDSDDKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSD 516
           QEIEP  + +L FD+ RVAA LVLAIS PLS  Q V SIP +IFSYAVTLLGRIS+AL D
Sbjct: 478 QEIEPSCEGRLDFDSVRVAALLVLAISAPLSEAQKVCSIPSRIFSYAVTLLGRISHALKD 537

Query: 517 VMNQHSLMAYLSLCSR--LSNFSEANFKGEDTPLHEAKSDDPNCT-TEVSIGADIHMQKS 573
           VMNQ++L+AYLS CS+  + + SE+ F     P+ E   D PNC+  ++   A + +Q+ 
Sbjct: 538 VMNQNTLLAYLSHCSKSTIVDNSESFF-----PMIEG--DIPNCSCIDMISPAGMSLQQG 590

Query: 574 SDEASKSRSWIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRI 633
           + E ++++  +  +   T    CQLE   E+ K++ ++L K+ ++W LVQ G   E LR+
Sbjct: 591 ASE-NENQKRLEPRKSATPLLDCQLEVHSEVAKSIKLILLKINDIWFLVQKGCMAEVLRM 649

Query: 634 LRACKEEVLTFKAESRGFDGALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLL 693
           LR+ +EE+ T+ ++S      L F+ QY +V+KLL K WE F+P +    Y  GEL  LL
Sbjct: 650 LRSFREELATYMSDSLVSADTLAFTFQYLRVVKLLAKVWEHFLPPRKTQSYRIGELNLLL 709

Query: 694 GKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYYTTMRNLSSTISHLE 753
           GKLDR+L+E+R RF GLSKEEELHVLEL+LV+C+LRLSK EIC +  T++ LS  ISH E
Sbjct: 710 GKLDRNLKEMRYRFRGLSKEEELHVLELILVTCILRLSKVEICCHNATLKKLSMIISHAE 769

Query: 754 FLHQQGSTEPSNFVTAVKKSLFEINISH--TSYRPSLFNQLLNSFSLSQLVFHGRLEHVH 811
           FLH++GS EP NFV  +KKSL EI+  +   S RP L  +LL SFSL Q    G  +H+ 
Sbjct: 770 FLHKEGSIEPYNFVVELKKSLGEIDTYNDGASCRPFLLKRLLESFSLKQFRLSGSPKHIK 829

Query: 812 AELGVPDNSSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLL 871
           AE+ +P N +E P+ F+SGLPV IP EITLYN+SS NRLWLRM + ++  +FVFLD N  
Sbjct: 830 AEIDLPGNDTE-PLPFISGLPVGIPLEITLYNVSSENRLWLRMIVHEQLMEFVFLDLNQS 888

Query: 872 GGCKDAKKFTYVAPFYRTPKA-SFTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKE 930
           GGC + +KFT++APFYRTPKA S TLRVCIGMECLFED++ +   GGP R L Y+C EKE
Sbjct: 889 GGCDEVRKFTFMAPFYRTPKAMSLTLRVCIGMECLFEDVNLITDCGGPTRELVYICQEKE 948

Query: 931 VYFSRV 936
           VY   +
Sbjct: 949 VYLGMI 954

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139272|ref|XP_002323031.1| predicted protein [Populus trichocarpa] gi|222867661|gb|EEF04792.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571481|ref|XP_002526688.1| conserved hypothetical protein [Ricinus communis] gi|223533988|gb|EEF35710.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357506205|ref|XP_003623391.1| Integrator complex subunit [Medicago truncatula] gi|355498406|gb|AES79609.1| Integrator complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|449459142|ref|XP_004147305.1| PREDICTED: uncharacterized protein LOC101203415 [Cucumis sativus] gi|449501277|ref|XP_004161326.1| PREDICTED: uncharacterized protein LOC101225075 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297829404|ref|XP_002882584.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297328424|gb|EFH58843.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22330923|ref|NP_187492.2| integrator complex subunit 4 [Arabidopsis thaliana] gi|17473697|gb|AAL38305.1| unknown protein [Arabidopsis thaliana] gi|332641160|gb|AEE74681.1| integrator complex subunit 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297735606|emb|CBI18100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|12322719|gb|AAG51343.1|AC012562_4 hypothetical protein; 82071-85833 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242036103|ref|XP_002465446.1| hypothetical protein SORBIDRAFT_01g038980 [Sorghum bicolor] gi|241919300|gb|EER92444.1| hypothetical protein SORBIDRAFT_01g038980 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query939
TAIR|locus:2077848936 SIEL "SHORT-ROOT interacting e 0.858 0.861 0.444 9.1e-171
FB|FBgn00266791022 IntS4 "Integrator 4" [Drosophi 0.167 0.153 0.320 2.5e-19
WB|WBGene000122341071 W04A4.5 [Caenorhabditis elegan 0.150 0.131 0.335 1e-18
DICTYBASE|DDB_G0286633 1233 ints4 "integrator complex subu 0.226 0.172 0.28 1.2e-18
UNIPROTKB|Q96HW7963 INTS4 "Integrator complex subu 0.204 0.199 0.331 7.1e-17
UNIPROTKB|E1BLD2964 INTS4 "Uncharacterized protein 0.204 0.199 0.331 7.1e-17
MGI|MGI:1917164964 Ints4 "integrator complex subu 0.204 0.199 0.331 7.1e-17
UNIPROTKB|D3ZZQ6964 Ints4 "Protein Ints4" [Rattus 0.204 0.199 0.331 7.1e-17
TAIR|locus:2077848 SIEL "SHORT-ROOT interacting embryonic lethal" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1660 (589.4 bits), Expect = 9.1e-171, P = 9.1e-171
 Identities = 368/828 (44%), Positives = 506/828 (61%)

Query:   115 VDDRFFVSLCFASSVSVRLWLLRNAERFNVRPHLLFTVCLGLTKDPYPYVREAALNGLVC 174
             +DD  F S+C  + +S RLWLLRNA+RFNV   +LFT+ LG +KDPYPY+R+ AL+GL+ 
Sbjct:   126 IDDEVFASICLGAPISSRLWLLRNADRFNVPSSVLFTLFLGFSKDPYPYIRKVALDGLIN 185

Query:   175 LLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEK-NRIDCS 233
             +     F     ++GC  RAVELL D ED VR +AVR VS WGK++IA  +E+ NR DC+
Sbjct:   186 ICNAGDFNHTHAVEGCYTRAVELLSDAEDSVRSSAVRAVSVWGKVMIASKEEEMNRRDCT 245

Query:   234 DVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAA 293
             D VF+QLCS++RDM ++VRVE F A G +G  SE ++LQTLSKKVLGA K KK  +L + 
Sbjct:   246 DAVFLQLCSVVRDMSVDVRVEVFKAFGIIGTASESIILQTLSKKVLGAGKGKKPQNLLSN 305

Query:   294 ECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSV 353
                ++S+  AAG ++HGFEDEFYEVR++A  S  SL + S KF  EA+ LL+DML DD +
Sbjct:   306 GSADVSS--AAGVYIHGFEDEFYEVREAAVDSFHSLSVNSIKFPDEAVYLLMDMLYDDYM 363

Query:   354 TVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFR 413
              VRL+AL+ +H +    +L +++ +M  FL  +VD SE +R  AR ILKL K P L+   
Sbjct:   364 VVRLKALKALHHIADLGNLKIQETYMPAFLDAIVDTSENIRVEARNILKLAKLPDLKLVN 423

Query:   414 LFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKLGFDNAR 473
               IDG+L++L++YPQDE D+ S LF  G++H NF   ++K   +++   S  K  F++ +
Sbjct:   424 KCIDGVLKSLEMYPQDEPDILSALFHFGQNHTNFLVSMVKRFSEKLGTASGSKAEFNSRQ 483

Query:   474 VAAFLVLAISVPLSCEQNVRSIPPQIFSYAVTLLGRISYALSDVMNQHSLMAYLSLCSRL 533
             ++A L L IS PLS +Q++ SIPP  FSY++ +LG+ S  L D+M+Q  L+AYL+ C+ L
Sbjct:   484 LSASLTLIISAPLSNKQSITSIPPLAFSYSLAMLGKFSSGLHDMMDQDMLLAYLTHCAIL 543

Query:   534 SNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRSWIHGKLKETAT 593
             S+ S   F   D   H  +  D N      +  +  +    D  ++S+            
Sbjct:   544 SSSSGTEFNKGDVFFHAYR--DSNA----DLAGNPVLLPGKDIPAESKYM---------A 588

Query:   594 SRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRGFDG 653
              + +LE  ++  K +N +L K++  W L QSG SKEALR LRACK+E+ T  A+S    G
Sbjct:   589 CKAELEIGNQALKFVNHILLKIKAAWLLSQSGCSKEALRALRACKQELATLTADSSISKG 648

Query:   654 ALLFSLQYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKX 713
              L F  QY  V++LL + W  F  +++I      E+E L+ +++  L E+RCRF GLS  
Sbjct:   649 TLDFICQYVHVIELLVQVWPHFNYSRHISTCSSVEVELLMEEVEIKLMEIRCRFTGLS-T 707

Query:   714 XXXXXXXXXXXSCLLRLSKFEICFYYTTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKS 773
                         CLLRL KFEIC   + M  LSSTIS LE  H+Q  T+PS+F+T  KKS
Sbjct:   708 EESLVLELVIFGCLLRLYKFEICCRLSCMEKLSSTISQLELHHEQQCTKPSDFLTETKKS 767

Query:   774 LFEINISH--TSYRPXXXXXXXXXXXXXXXVFHGRLEHVHAELGVPDNSSENPVIFVSGL 831
             L E   S    S R                 F   L+ V AE+ VP N   +P+ FV GL
Sbjct:   768 LEEFGSSDDINSCRLLDLIKIFKCFSPEQFTFSVNLQCVSAEVEVPGNGPYSPISFVPGL 827

Query:   832 PVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPK 891
             PV+IP EITL N+     LWLR++ +DET QFV+LD NL  G    K+F + A  Y TP+
Sbjct:   828 PVAIPCEITLLNVPRDTCLWLRISRNDETCQFVYLDPNLYNGNGREKRFMFTAVTYMTPR 887

Query:   892 AS-FTLRVCIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSR 938
             A  FTLRV IG+ECLFEDI   K   GPK  +AYLC E+E++ S VSR
Sbjct:   888 AVVFTLRVSIGIECLFEDICYRKQRHGPKHPVAYLCKEREIHLSLVSR 935
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005768 "endosome" evidence=IDA
GO:0010496 "intercellular transport" evidence=IMP
GO:0090057 "root radial pattern formation" evidence=IMP
FB|FBgn0026679 IntS4 "Integrator 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00012234 W04A4.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286633 ints4 "integrator complex subunit 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HW7 INTS4 "Integrator complex subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLD2 INTS4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1917164 Ints4 "integrator complex subunit 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|D3ZZQ6 Ints4 "Protein Ints4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVI.83.1
hypothetical protein (929 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query939
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 3e-04
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information 
 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 49/239 (20%), Positives = 81/239 (33%), Gaps = 38/239 (15%)

Query: 193 RAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVR 252
             ++LL D +  VR +A   + E G               S+     L  ++ D    VR
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELG---------------SEEAVPLLRELLSDEDPRVR 91

Query: 253 VEAFNALGKVGM-ISEIVLLQTLSKKVLGATKEKKFHSLGA-------AECFEISASAAA 304
             A +ALG++G   +   L++ L        +     +LG            E      +
Sbjct: 92  DAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDS 151

Query: 305 GTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMH 364
           G+     +    +VR +A         L E    EA+ LL+++L D+   VR  A   + 
Sbjct: 152 GSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIELLEDEDADVRRAAASAL- 204

Query: 365 IMVTCEHLNLEDKHMHMFLGTLV-DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLEN 422
                  L  E+      L   + D S  VR AA   L  +   +          L + 
Sbjct: 205 -----GQLGSENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAV--DALAKALEDE 256

Length = 335

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 939
KOG2259823 consensus Uncharacterized conserved protein [Funct 100.0
PRK09687280 putative lyase; Provisional 99.93
PRK09687280 putative lyase; Provisional 99.92
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.85
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.84
COG1413335 FOG: HEAT repeat [Energy production and conversion 99.69
TIGR02270410 conserved hypothetical protein. Members are found 99.69
TIGR02270410 conserved hypothetical protein. Members are found 99.67
COG1413335 FOG: HEAT repeat [Energy production and conversion 99.63
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.41
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.4
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.34
KOG2259823 consensus Uncharacterized conserved protein [Funct 99.29
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.14
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 99.11
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.09
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.07
PTZ00429746 beta-adaptin; Provisional 99.06
KOG0567289 consensus HEAT repeat-containing protein [General 99.05
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 99.05
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.02
PTZ00429746 beta-adaptin; Provisional 98.97
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.79
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.71
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.64
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.6
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.55
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.53
KOG0567289 consensus HEAT repeat-containing protein [General 98.5
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.39
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.35
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 98.31
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.3
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.3
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.27
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 98.22
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.13
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.1
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.06
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.97
KOG1242569 consensus Protein containing adaptin N-terminal re 97.95
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.9
KOG1242569 consensus Protein containing adaptin N-terminal re 97.88
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 97.87
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.84
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.81
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.81
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.8
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.77
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.76
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.68
KOG18241233 consensus TATA-binding protein-interacting protein 97.65
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.65
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.65
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.57
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.54
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 97.48
KOG18241233 consensus TATA-binding protein-interacting protein 97.48
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.45
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.41
smart00638574 LPD_N Lipoprotein N-terminal Domain. 97.41
COG5116926 RPN2 26S proteasome regulatory complex component [ 97.37
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.36
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.35
KOG2025892 consensus Chromosome condensation complex Condensi 97.32
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.31
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.3
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 97.26
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 97.23
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 97.18
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.13
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.11
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.07
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.03
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.95
KOG2062929 consensus 26S proteasome regulatory complex, subun 96.91
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 96.91
KOG04141251 consensus Chromosome condensation complex Condensi 96.9
KOG2025892 consensus Chromosome condensation complex Condensi 96.88
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.88
KOG09151702 consensus Uncharacterized conserved protein [Funct 96.87
PF05804708 KAP: Kinesin-associated protein (KAP) 96.87
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 96.85
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 96.81
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.81
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.74
smart00638574 LPD_N Lipoprotein N-terminal Domain. 96.67
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.59
COG5218885 YCG1 Chromosome condensation complex Condensin, su 96.53
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.39
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.29
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 96.25
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.24
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.2
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 96.18
PF05004309 IFRD: Interferon-related developmental regulator ( 96.16
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.12
KOG4653982 consensus Uncharacterized conserved protein [Funct 96.04
KOG2032533 consensus Uncharacterized conserved protein [Funct 96.0
COG5218885 YCG1 Chromosome condensation complex Condensin, su 95.95
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 95.94
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 95.92
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 95.91
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.89
KOG1293678 consensus Proteins containing armadillo/beta-caten 95.8
KOG4535728 consensus HEAT and armadillo repeat-containing pro 95.8
KOG04141251 consensus Chromosome condensation complex Condensi 95.8
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.78
KOG1243690 consensus Protein kinase [General function predict 95.7
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.61
smart0056730 EZ_HEAT E-Z type HEAT repeats. Present in subunits 95.59
KOG09151702 consensus Uncharacterized conserved protein [Funct 95.5
KOG19491005 consensus Uncharacterized conserved protein [Funct 95.43
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 95.42
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.36
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.21
KOG2032533 consensus Uncharacterized conserved protein [Funct 95.18
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.0
PF0313027 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP 94.98
KOG04131529 consensus Uncharacterized conserved protein relate 94.94
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 94.89
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.64
KOG4535728 consensus HEAT and armadillo repeat-containing pro 94.31
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 94.29
KOG1820815 consensus Microtubule-associated protein [Cytoskel 93.93
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 93.75
PF05804708 KAP: Kinesin-associated protein (KAP) 93.35
KOG2933334 consensus Uncharacterized conserved protein [Funct 93.06
KOG4413524 consensus 26S proteasome regulatory complex, subun 93.02
PF0313027 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP 93.01
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 92.97
smart0056730 EZ_HEAT E-Z type HEAT repeats. Present in subunits 92.93
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 92.58
KOG1820815 consensus Microtubule-associated protein [Cytoskel 92.51
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 92.33
PF1036392 DUF2435: Protein of unknown function (DUF2435) 91.77
KOG1293678 consensus Proteins containing armadillo/beta-caten 91.71
PF05004309 IFRD: Interferon-related developmental regulator ( 91.66
KOG2956516 consensus CLIP-associating protein [General functi 91.53
KOG4199461 consensus Uncharacterized conserved protein [Funct 91.51
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 91.45
KOG12481176 consensus Uncharacterized conserved protein [Funct 91.22
COG5098 1128 Chromosome condensation complex Condensin, subunit 91.18
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 91.16
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.96
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.9
KOG15171387 consensus Guanine nucleotide binding protein MIP1 90.84
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 90.45
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 90.33
PF13251182 DUF4042: Domain of unknown function (DUF4042) 89.68
COG50981128 Chromosome condensation complex Condensin, subunit 88.96
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 88.95
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 88.62
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 88.29
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 87.63
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 87.27
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 87.21
KOG4653982 consensus Uncharacterized conserved protein [Funct 86.88
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 86.81
KOG0413 1529 consensus Uncharacterized conserved protein relate 85.82
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 84.83
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 84.46
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 83.97
PF14500262 MMS19_N: Dos2-interacting transcription regulator 82.65
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 82.61
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 82.22
PF14500262 MMS19_N: Dos2-interacting transcription regulator 81.51
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 81.05
KOG20111048 consensus Sister chromatid cohesion complex Cohesi 80.79
COG5537740 IRR1 Cohesin [Cell division and chromosome partiti 80.62
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-85  Score=744.91  Aligned_cols=726  Identities=26%  Similarity=0.260  Sum_probs=591.4

Q ss_pred             cccccchhhhhhhhhhhcCCCCChhhHHHHHHHHhhhcCCCCCCchhhHHHHHHhhcccccCCCCcchhhhhhhhccc--
Q 002304           15 VSKRHSLRALSSIRSLINNPNTSNSTLSSLLETLTRSLQLTDSDSLTRHHELTLLAGLSLRHPHFSPLISNSLRSNSL--   92 (939)
Q Consensus        15 ~~~~~~~~~l~~~~~l~~~~~t~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--   92 (939)
                      -....|++...|++|+++|..|++.+.|+.+..++++++= .++ +-.||+++++++++++|-.+.+|+||+.-+..+  
T Consensus        22 s~~~~s~~~t~s~ksaa~~a~~~~a~ss~~~~~ll~~l~r-~~s-~~~~~v~el~svl~~~r~l~e~q~fDs~~s~~~K~   99 (823)
T KOG2259|consen   22 SPESISLDTTASIKSAAINADTSDAVSSSVFLFLLGLLSR-GNS-AILHHVLELLSVLAFRRMLLELQIFDSDESSRKKL   99 (823)
T ss_pred             CccccccccccCchhhhhCCChhhccCHHHHHHHHHHHhc-cch-HHHHHHHHHHhhhhhHHHhhcchhccccchhhhHH
Confidence            3556899999999999999999999999999999999883 333 339999999999999999999999999886552  


Q ss_pred             ---------cccccch-hhHHHHhhh---ccCCchhHHHHHHHh---hcCCchHHHHHHhhhccc-c------CC-----
Q 002304           93 ---------LFSSYSP-RLAAAAALA---VISDHTVDDRFFVSL---CFASSVSVRLWLLRNAER-F------NV-----  144 (939)
Q Consensus        93 ---------~~~~~~~-~l~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~------~v-----  144 (939)
                               .++--|+ .+...+++-   |++.++|..++-+-+   |.+++...+.|++.+..+ .      |+     
T Consensus       100 ~~l~~~l~~~~~~~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~  179 (823)
T KOG2259|consen  100 AILLGILEADFENGSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLY  179 (823)
T ss_pred             HHHhhHhhhhhccCchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHH
Confidence                     1111110 222233332   888887766655555   555555689998887433 1      22     


Q ss_pred             ---------------ChhhHHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHH
Q 002304          145 ---------------RPHLLFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAA  209 (939)
Q Consensus       145 ---------------~~~~L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aA  209 (939)
                                     ..+.+..-+..+.+|.|++||+.|+++|..+++ |.    ++...||..+++++.|+++.||.+|
T Consensus       180 ~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~----kL~~~~Y~~A~~~lsD~~e~VR~aA  254 (823)
T KOG2259|consen  180 CFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GF----KLSKACYSRAVKHLSDDYEDVRKAA  254 (823)
T ss_pred             HHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cc----cccHHHHHHHHHHhcchHHHHHHHH
Confidence                           223344457889999999999999999999998 65    5667799999999999999999999


Q ss_pred             HHHHHHhcchhh-hhcccccccccchhHHHHHHHhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhc
Q 002304          210 VRVVSEWGKMLI-ACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFH  288 (939)
Q Consensus       210 V~aLg~lg~~~~-~~~~~~~~i~lvddaf~aLc~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~  288 (939)
                      +++++.||+..+ +...++++.++.|+||.++|++++|.+|.||++||++||.|+++|++++.|||+||+|+++|+||+.
T Consensus       255 vqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a  334 (823)
T KOG2259|consen  255 VQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA  334 (823)
T ss_pred             HHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc
Confidence            999999999873 3445567788999999999999999999999999999999999999999999999999999999886


Q ss_pred             cccch-------------------------hhhhhhhhcchHHHhhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHH
Q 002304          289 SLGAA-------------------------ECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNL  343 (939)
Q Consensus       289 ~~l~~-------------------------d~~~l~~s~a~gaLI~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~  343 (939)
                      ++..+                         +..+++.+||||||||||||||+|||++|++++|+|+..+|.||.+++++
T Consensus       335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldf  414 (823)
T KOG2259|consen  335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDF  414 (823)
T ss_pred             ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            54211                         12468889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCCCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhh
Q 002304          344 LVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVDNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENL  423 (939)
Q Consensus       344 LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L  423 (939)
                      |+||||||++.||++|+.+|.+|+.  +++++|++++.+++.|+|.+++||.+++++|+..++++.+|+++++..|++||
T Consensus       415 LvDMfNDE~~~VRL~ai~aL~~Is~--~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L  492 (823)
T KOG2259|consen  415 LVDMFNDEIEVVRLKAIFALTMISV--HLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL  492 (823)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHH--HheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            9999999999999999999999995  48999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCC-CCCCCCchhHHHHHHHHhhccccCcCCCCCCChhhhhh
Q 002304          424 KIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSD-DKLGFDNARVAAFLVLAISVPLSCEQNVRSIPPQIFSY  502 (939)
Q Consensus       424 ~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~-~e~~~dd~~yiA~Lili~~A~~s~~~~~~~ip~~~fsh  502 (939)
                      .+||+||.+||+|+++||++|+.++..++.++++. +++|. .|++++|+.|+|+||+++||+.++|..+.++|...   
T Consensus       493 ~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~k-h~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~---  568 (823)
T KOG2259|consen  493 GKYPQDRDEILRCMGRIGQNHRRLVLSNMGRFLEK-HTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAH---  568 (823)
T ss_pred             hhCCCCcHHHHHHHHHHhccChhhHHHHHHHHHHh-cccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHH---
Confidence            99999999999999999999999999999999997 77776 99999999999999999999999998777777421   


Q ss_pred             hHhhhchhhhhhhhhhhhhhhhhhhccccCCCccccccCCCCCCcccccCCCCCCCcccccccccccccccchhhhccch
Q 002304          503 AVTLLGRISYALSDVMNQHSLMAYLSLCSRLSNFSEANFKGEDTPLHEAKSDDPNCTTEVSIGADIHMQKSSDEASKSRS  582 (939)
Q Consensus       503 ~~~~~~k~y~~l~D~m~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (939)
                           .|||.|||+-+     +. ||+..++-     ... ...++..                    -++++       
T Consensus       569 -----hrhla~Lr~ss-----pn-Lv~~~pi~-----~ld-~~~q~~r--------------------i~ssd-------  604 (823)
T KOG2259|consen  569 -----HRHLAILRCSS-----PN-LVGDGPIF-----FLD-ILCQFLR--------------------IKSSD-------  604 (823)
T ss_pred             -----HHHHHHHhccC-----CC-CCCccchH-----HHH-HHHHHhh--------------------hhccc-------
Confidence                 26778888733     44 44433322     000 0000000                    01111       


Q ss_pred             hhhcchhhchhcchhhhhhHHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHhhhhcccC---cchHHHHHH
Q 002304          583 WIHGKLKETATSRCQLEEEDEIWKALNIVLAKVRNVWSLVQSGFSKEALRILRACKEEVLTFKAESRG---FDGALLFSL  659 (939)
Q Consensus       583 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~il~~v~~~~~~~~~~~~~~~~~~L~~~~~eL~~l~~~~~~---~~g~~~f~~  659 (939)
                                      +..+...+-+...+.+.++..++     +...+....+..++.++.+.++..   .+||..|..
T Consensus       605 ----------------~~te~~ae~vfm~~yr~~~~~ta-----t~~~L~~g~~~~~~~k~~~~i~~~~~~~~gt~~~~~  663 (823)
T KOG2259|consen  605 ----------------GETERQAEKVFMRMYREDDPRTA-----TIYYLYEGMVELRCKKKDDMIQRAPFLFAGTGFDAS  663 (823)
T ss_pred             ----------------ccchhhHHHHHHHHHhhccchhh-----hhHHHhccchhHhhhhhhHHHHhhhhhhhhhHHHHH
Confidence                            11223345566677777776654     455555555556666666666655   899988888


Q ss_pred             HHHHHHHHHHHHHhhhccCCCccccccchHHHHHHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHHHhhhhhhheehhhh
Q 002304          660 QYFKVLKLLTKGWEQFVPAKNIHHYEQGELEFLLGKLDRSLRELRCRFLGLSKEEELHVLELMLVSCLLRLSKFEICFYY  739 (939)
Q Consensus       660 ~Yl~~~~ll~k~~~~~~~~~~~~~~~~~~~~~~l~kL~~~~~~l~~~f~Gls~~e~~~V~el~L~a~al~L~~~~~~~~~  739 (939)
                      .....+--...+.+..+     ...+-..++.++.|..+.+++|+|+|+|++.++.                        
T Consensus       664 ~l~~~~a~ve~iq~t~~-----~~~~~v~vkell~q~vs~c~~~ph~fsgl~~~~~------------------------  714 (823)
T KOG2259|consen  664 VLCNPRAMVEYIQSTDF-----GSIRFVRVKELLPQRVSVCRRMPHRFSGLLLEED------------------------  714 (823)
T ss_pred             HHhchHHHHHHHhhhhh-----cceeeeeHHHHHHHHHHHHHhccCccCccccccc------------------------
Confidence            88877777766666554     2445578999999999999999999999765544                        


Q ss_pred             hhhHhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhhccCCCCcCchhhhhhhccccccccccCccceeeEEEEecCCC
Q 002304          740 TTMRNLSSTISHLEFLHQQGSTEPSNFVTAVKKSLFEINISHTSYRPSLFNQLLNSFSLSQLVFHGRLEHVHAELGVPDN  819 (939)
Q Consensus       740 ~~l~~~~~~i~~ve~~~~~~~~~p~~F~~~l~k~l~~~~~~g~~~~~~~~~~lLq~~~~~~~~~~~~i~~~~A~I~eP~~  819 (939)
                                                                                                      
T Consensus       715 --------------------------------------------------------------------------------  714 (823)
T KOG2259|consen  715 --------------------------------------------------------------------------------  714 (823)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceeeccCcceeeeeeEEEeccCCCceeEEEEEecCCceEEEecCCCCCCCCCceeEEEEEeecccCCCc-cceeee
Q 002304          820 SSENPVIFVSGLPVSIPFEITLYNISSVNRLWLRMTMSDETTQFVFLDSNLLGGCKDAKKFTYVAPFYRTPKA-SFTLRV  898 (939)
Q Consensus       820 dsdnp~~FtaGL~vaI~~datl~nv~~~~~lrlrv~ypD~~~Q~i~p~~~~~~g~~~~rl~T~V~~sh~~~ea-~~v~~i  898 (939)
                                  +..|+|.+++.|+.-...+|.|+.--++-+|+..+.++|..+..+-|-+.+..--+.|+-| |++.+.
T Consensus       715 ------------~q~i~crv~l~~l~~~~~i~~r~~s~~dvCq~~~lt~~d~s~~i~~kpf~~~~d~~mt~~av~~~~~~  782 (823)
T KOG2259|consen  715 ------------IQDIHCRVWLGDLPRDTPIHFRARSTVDVCQLDDLTSIDCSVVILLKPFMFCRDVQMTRTAVILIERK  782 (823)
T ss_pred             ------------ceeeeEEEEecCCCchHHHHHHHhccccchhhccccchhhhhhhhcCCceeeeccccccceeeeeecc
Confidence                        3345666666666666688888888899999999999998777777777777778889667 999999


Q ss_pred             ehhhccccccccccccCCCccccccccccceeEEEEeccCC
Q 002304          899 CIGMECLFEDIHSVKGNGGPKRALAYLCNEKEVYFSRVSRG  939 (939)
Q Consensus       899 ~l~le~~~~~i~~~~~~~gp~~~~v~Lck~~~V~~~~~~~~  939 (939)
                      ++..+|+++..+++++..||+.+++++||+-+..++.+|+|
T Consensus       783 s~~~~lligld~~rk~~~g~~~~~~l~~~~~~~pL~lpsa~  823 (823)
T KOG2259|consen  783 SPKKDLLIGLDSYRKQRHGPKHPVALLCKEREIPLSLPSAT  823 (823)
T ss_pred             cCccccCccccccccCCCCCcchhhhcccccCCCcCCCCCC
Confidence            99999999999999999999999999999999999999876

>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>smart00567 EZ_HEAT E-Z type HEAT repeats Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>smart00567 EZ_HEAT E-Z type HEAT repeats Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query939
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-10
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-08
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 7e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-07
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-06
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 1e-05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-04
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 8e-04
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 45/254 (17%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 158 KDPYPYVREAALNGLVCLLKHVVFE--DVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSE 215
           ++    +REA  NG   L K ++    D  +++    + +ELL D    V   A+ ++  
Sbjct: 4   EEEEFDIREALANGE-HLEKILIMAKYDESVLK----KLIELLDDDLWTVVKNAISIIMV 58

Query: 216 WGKMLIACIDEKNRIDCSDVVFIQLCSMIRDMRMEVRVEAFNALGKVGMISE------IV 269
                   I +        ++      + +   + +  E   A G++           I 
Sbjct: 59  --------IAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110

Query: 270 LLQTLSKKVLGATKEKKFHSLGA-AECFEISASAAAGTFVHGFEDEFYEVRKSACSSLGS 328
           +L    +     TK    ++L   A+   +  ++    F+     +  E + +A + + +
Sbjct: 111 VLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEA 170

Query: 329 LVILSEKFAGEALNLLVDMLNDDSVTVRLQALETM-HIMVTCEHLNLEDKHMHMFLGTLV 387
           +   S K+    L  ++++L+D    VR  A+E + H+    + L    K +   L  L 
Sbjct: 171 MGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL---RKVVIKRLEELN 227

Query: 388 DNSELVRCAARKIL 401
           D S LV    ++ +
Sbjct: 228 DTSSLVNKTVKEGI 241
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query939
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.91
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.9
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.89
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.88
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.84
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.84
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.81
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.73
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.7
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.67
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.67
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.65
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.65
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.64
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.64
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.62
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.61
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.61
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.6
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.6
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.6
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.59
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.56
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.55
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 99.54
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.52
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.52
1qgr_A876 Protein (importin beta subunit); transport recepto 99.51
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 99.5
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.49
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.48
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.47
1qgr_A876 Protein (importin beta subunit); transport recepto 99.47
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.44
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 99.43
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.4
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.39
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.39
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.38
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.38
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.38
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.37
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.36
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.36
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.35
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.35
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.35
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 99.34
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.32
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.27
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.27
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.24
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.24
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.22
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.18
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.17
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.1
3nmz_A458 APC variant protein; protein-protein complex, arma 99.06
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.99
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.99
3nmz_A458 APC variant protein; protein-protein complex, arma 98.99
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.95
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.94
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.92
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.91
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.9
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 98.86
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.84
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.8
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.75
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.72
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.71
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.68
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.68
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.54
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.5
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 98.37
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.35
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.11
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.11
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.95
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.89
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.83
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.74
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.58
2x19_B963 Importin-13; nuclear transport, protein transport; 97.56
2x1g_F971 Cadmus; transport protein, developmental protein, 97.55
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.39
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.35
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 97.28
2x19_B963 Importin-13; nuclear transport, protein transport; 97.25
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 97.21
2x1g_F971 Cadmus; transport protein, developmental protein, 97.13
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.04
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.99
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 96.96
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.73
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 96.5
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.39
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.37
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.33
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.23
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.04
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.02
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.99
3grl_A651 General vesicular transport factor P115; vesicle t 95.67
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 95.4
3grl_A651 General vesicular transport factor P115; vesicle t 95.22
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 95.12
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 92.79
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 90.59
3jxy_A232 Alkylpurine DNA glycosylase ALKD; heat repeat, DNA 90.26
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 89.55
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 89.26
3jxy_A232 Alkylpurine DNA glycosylase ALKD; heat repeat, DNA 88.53
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 86.41
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 84.97
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 83.94
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 82.13
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 80.34
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 80.33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
Probab=99.91  E-value=2.9e-23  Score=217.41  Aligned_cols=253  Identities=17%  Similarity=0.111  Sum_probs=195.2

Q ss_pred             HHHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhccccc
Q 002304          149 LFTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKN  228 (939)
Q Consensus       149 L~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~  228 (939)
                      .+..+.+.++|+++.||..|+.+|++++.+.          ..+.+.++|+|+++.||..|+.+||.++...        
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~----------~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--------   85 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGGQD----------AVRLAIEFCSDKNYIRRDIGAFILGQIKICK--------   85 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHH----------HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--------
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCCch----------HHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--------
Confidence            4577788899999999999999999987543          3678899999999999999999999998521        


Q ss_pred             ccccchhHHHHHH-HhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHH
Q 002304          229 RIDCSDVVFIQLC-SMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTF  307 (939)
Q Consensus       229 ~i~lvddaf~aLc-~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaL  307 (939)
                        ..+...+..|. .+++|+++.||..|+++||+++...+.                              ....+++.|
T Consensus        86 --~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------------------------------~~~~~~~~L  133 (280)
T 1oyz_A           86 --KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI------------------------------YSPKIVEQS  133 (280)
T ss_dssp             --TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------------------------------GHHHHHHHH
T ss_pred             --ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc------------------------------ccHHHHHHH
Confidence              11123334444 357999999999999999998631100                              023467789


Q ss_pred             hhccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcC
Q 002304          308 VHGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLV  387 (939)
Q Consensus       308 I~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~  387 (939)
                      +..|.|+++.||.+|+.+||+++..      .+++.|+.+++|+++.||..|+.+||+++..     .++.++.++..|+
T Consensus       134 ~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~L~~~l~  202 (280)
T 1oyz_A          134 QITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDCFVEMLQ  202 (280)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHTT
T ss_pred             HHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHHHHHHhc
Confidence            9999999999999999999999862      4899999999999999999999999999732     2568999999999


Q ss_pred             CCCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHHhhhcCCCCCCCC
Q 002304          388 DNSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEVCQEIEPDSDDKL  467 (939)
Q Consensus       388 D~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~Ll~~i~p~~~~e~  467 (939)
                      |++++||..+..+|+.++.+.      ++..|+..++. ++.|..+.++|+++|.  +..+ +.+.++++. +       
T Consensus       203 d~~~~vR~~A~~aL~~~~~~~------~~~~L~~~l~d-~~vr~~a~~aL~~i~~--~~~~-~~L~~~l~~-~-------  264 (280)
T 1oyz_A          203 DKNEEVRIEAIIGLSYRKDKR------VLSVLCDELKK-NTVYDDIIEAAGELGD--KTLL-PVLDTMLYK-F-------  264 (280)
T ss_dssp             CSCHHHHHHHHHHHHHTTCGG------GHHHHHHHHTS-SSCCHHHHHHHHHHCC--GGGH-HHHHHHHTT-S-------
T ss_pred             CCCHHHHHHHHHHHHHhCCHh------hHHHHHHHhcC-ccHHHHHHHHHHhcCc--hhhh-HHHHHHHhc-C-------
Confidence            999999999999999998543      35566666554 5679999999999997  3444 333344432 1       


Q ss_pred             CCCchhHHHHHHHHh
Q 002304          468 GFDNARVAAFLVLAI  482 (939)
Q Consensus       468 ~~dd~~yiA~Lili~  482 (939)
                        +|+.|+-..+-.+
T Consensus       265 --~~~~~~~~~~~~l  277 (280)
T 1oyz_A          265 --DDNEIITSAIDKL  277 (280)
T ss_dssp             --SCCHHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHh
Confidence              3566776655544
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 939
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 2e-05
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-05
d1lrva_233 a.118.1.5 (A:) Leucine-rich repeat variant {Azotob 1e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-04
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-04
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 0.003
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 0.004
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query939
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.81
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.75
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.68
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.68
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 99.58
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 99.57
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.51
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.46
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 99.43
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 99.21
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.21
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.19
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.17
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.17
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.17
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.16
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.16
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.15
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.13
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.12
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.1
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.09
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.94
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.91
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.9
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.85
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.82
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.77
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.71
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.57
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.19
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 97.99
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 97.43
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.03
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 93.81
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 92.8
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 92.2
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 80.81
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.1e-18  Score=175.78  Aligned_cols=236  Identities=18%  Similarity=0.113  Sum_probs=182.1

Q ss_pred             HHHHHhhhcCCCHHHHHHHHHHHHhhhhcccccchhhhhhHHHHHHHhhCCCCchHHHHHHHHHHHhcchhhhhcccccc
Q 002304          150 FTVCLGLTKDPYPYVREAALNGLVCLLKHVVFEDVDLIQGCCCRAVELLRDHEDCVRCAAVRVVSEWGKMLIACIDEKNR  229 (939)
Q Consensus       150 ~~~L~~ll~D~Dp~VRraAl~AL~~L~~~~~~~~~~l~~~i~~~l~~lL~Ddd~~VR~aAV~aLg~lg~~~~~~~~~~~~  229 (939)
                      .+.+.++++|+||.||.+|+.+|+.+++...          ++.+.++++|+++.||..|+.+|+.++...         
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~~~~----------~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~---------   81 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGGQDA----------VRLAIEFCSDKNYIRRDIGAFILGQIKICK---------   81 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----------HHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCCHhH----------HHHHHHHHcCCCHHHHHHHHHHHHHhcccc---------
Confidence            4567889999999999999999998875433          688899999999999999999999987531         


Q ss_pred             cccchhHHHHHH-HhhcCCCHHHHHHHHHHHhcccCCcHHHHHHHhhHHHhhhhhhhhhccccchhhhhhhhhcchHHHh
Q 002304          230 IDCSDVVFIQLC-SMIRDMRMEVRVEAFNALGKVGMISEIVLLQTLSKKVLGATKEKKFHSLGAAECFEISASAAAGTFV  308 (939)
Q Consensus       230 i~lvddaf~aLc-~aL~D~s~~VR~~AA~ALG~i~~vs~~~LlqtL~kklm~~lk~kr~~~~l~~d~~~l~~s~a~gaLI  308 (939)
                       ...+.+...+. .+++|+++.||..|+.+||+++......                              ...+++.+.
T Consensus        82 -~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~------------------------------~~~~~~~l~  130 (276)
T d1oyza_          82 -KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY------------------------------SPKIVEQSQ  130 (276)
T ss_dssp             -TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG------------------------------HHHHHHHHH
T ss_pred             -ccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh------------------------------hHHHHHHHH
Confidence             11122333333 4679999999999999999986311100                              133556788


Q ss_pred             hccCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhcccccchhhHHHHHHHhcCC
Q 002304          309 HGFEDEFYEVRKSACSSLGSLVILSEKFAGEALNLLVDMLNDDSVTVRLQALETMHIMVTCEHLNLEDKHMHMFLGTLVD  388 (939)
Q Consensus       309 ~~LeDE~~eVR~aAaeALGkL~~~s~~fA~~ALd~LvdmLnDe~~~VRl~Aa~ALgkI~~~~~i~l~E~aL~~LL~~L~D  388 (939)
                      ..+.|+++.||.+|+.++|..+..      .+++.+..++++.++.||..+..+++.+...     ....++.++..+.|
T Consensus       131 ~~~~d~~~~vr~~a~~~l~~~~~~------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  199 (276)
T d1oyza_         131 ITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDCFVEMLQD  199 (276)
T ss_dssp             HHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHTTC
T ss_pred             HHhcCcchHHHHHHHHHHhhcchH------HHHHHHHHhcccccchhhhhHHHHHHhhhcc-----ccccchhhhhhhhh
Confidence            889999999999999999998853      5788899999999999999999999887642     24577889999999


Q ss_pred             CCHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhccCccchHHHHHHHHHhhcccccchHHHHHHH
Q 002304          389 NSELVRCAARKILKLVKTPKLEFFRLFIDGLLENLKIYPQDEADVFSVLFFIGRSHGNFAACIIKEV  455 (939)
Q Consensus       389 ~~~dVR~aA~~aLg~i~l~~~~~l~~~l~~LL~~L~~~peDr~~I~~aL~~LG~~H~~lv~~lv~~L  455 (939)
                      ++..+|..+..+++.++...      ++..|++.+. ++++|..+.++|++||.  +..+..+..-|
T Consensus       200 ~~~~~~~~~~~al~~~~~~~------~~~~L~~~l~-d~~vr~~a~~aL~~ig~--~~~~~~L~~~l  257 (276)
T d1oyza_         200 KNEEVRIEAIIGLSYRKDKR------VLSVLCDELK-KNTVYDDIIEAAGELGD--KTLLPVLDTML  257 (276)
T ss_dssp             SCHHHHHHHHHHHHHTTCGG------GHHHHHHHHT-SSSCCHHHHHHHHHHCC--GGGHHHHHHHH
T ss_pred             hhhhhhhhhccccchhhhhh------hHHHHHHHhC-ChHHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence            99999999999999987643      3555566554 46789999999999995  45544444433
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure