Citrus Sinensis ID: 002384

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------93
MSKAEHMGVSPSQVTSSTRDHSCLKQTTPEQMCKFCAECIHSEPLESKSLLGSEAVENEPRETSIPNSEKLQAFCGDVPDSSFTDHLAPPSEDMRKSTQTNKASCSQQNTSEQKHGTELMHNEQSEQKHQLCYQIVFDKPQATSLVDNATLQPVSKDVSKSSQTGNRQALDFLSGNRCNELDVDCVHSEPLNQKHQLGSEIIQNEPAVNIARLPSDGVEENLQTISEDLTKVCPVEPSQSPPRDANKSCQAGEISCLQQSSSEQTPEFTPGISSHEPSVVNYKLGSQLEQTELGETSAGELGASLELVVKSSIEQLKQPEVPITIPSTKTSATKHLQSSSDLMEKKSCLEQSETPPNYVANNSACLGRKGKRATKSLKNNYTVRSLIGSDRVLRSRSGERPIPPESSINLADVNSIGERKQKKRNKIRRKKIVADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAAAGHNQDPNFGLASDDSDDNEYDPDGSATDEQDEGDESSSDGSSSDDSDFTSTSDEVEAPADDKTYLGLSSEDSEDDEYNPDAPELDDKVTQESSSSGSDFTSDSEDLAAVLEDNRSSGNDEGAASPLGHSNGQRYKDGGNNESLNNELLSIIKPGQDGAAPVYGKRSSERLDYKKLYDETYGNVPYDSSDDESWSDDGGPRKRTKSTKEGSSASPDGKTPVIRRRKSTKAAKEKLNETENTPKRRGRPKLNTEDSNISPAKSHEGCSTPGSRGRRHRTSYRKLGEEVTQVIWLSADAFLLYCEIYNGHHKDGNNNFIAV
ccccccccccccccccccccccccccccHHHHccccccccccccHHHcccccccccccccccccccccHHHHcccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEEcccccccccccccc
ccHHHHccccccccccccccccccccccHHHcccccccccccccHHHHcccccHHEEccccccccccHHHHHHHcccccccccccccccccHHccccccccccccccccccccccccEEEEccccccccccccEEEccccHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEccHHEEcccccccHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccEEHHcccccccccccEEEEcccccccHHHHHccccccHcccccccccccccccccHHHHHHHHHHHccccccccccHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHccccccccccEEEc
mskaehmgvspsqvtsstrdhsclkqttpeqMCKFCaecihseplesksllgseavenepretsipnseklqafcgdvpdssftdhlappsedmrkstqtnkascsqqntseqkhgTELMHNEQSEQKHQLCYQIVfdkpqatslvdnatlqpvskdvskssqtgnrqaldflsgnrcneldvdcvhseplnqkhqlgseiiqnepavniarlpsdgveeNLQTISEDltkvcpvepsqspprdankscqageisclqqssseqtpeftpgisshepsvvnyklgsqleqtelgetsagelGASLELVVKSSIeqlkqpevpitipstktsatkhlqsssdlmekkscleqsetppnyvannsaclgrkgkratkslknNYTVRSLigsdrvlrsrsgerpippessinladvnsigerkQKKRNKIRRKKIVADEYSRIRTHLRYLLNRINYEQNLIDAYssegwkglsveklkpeKELQRATSEILRRKLKIRDLFQRLDslcaggfpkslfdsegqidsediycakcgskdlsadndiilcdgacdrgfhqycleppllkedippddegwlcpgcdckvDCIDLVNelqgtrlfitDNWEKVFPeaaaghnqdpnfglasddsddneydpdgsatdeqdegdesssdgsssddsdftstsdeveapaddktylglssedseddeynpdapelddkvtqessssgsdftsdsEDLAAVLEdnrssgndegaasplghsngqrykdggnneslNNELLSIikpgqdgaapvygkrsserldykklydetygnvpydssddeswsddggprkrtkstkegssaspdgktpvirrRKSTKAAKEKLNEtentpkrrgrpklntedsnispakshegcstpgsrgrrhrtsyRKLGEEVTQVIWLSADAFLLYCEIYnghhkdgnnnfiav
mskaehmgvspsqvtsstrdhscLKQTTPEQMCKFCAECIHSEPLESKSLLGSEAVENepretsipnseKLQAFCGDVPDSSFTDHLAPPSEDMRKSTQTNKASCSQQNTSEQKHGTELMHNEQSEQKHQLCYQIVFDKPQATSLVDNATLqpvskdvskssqtgnRQALDFLSGNRCNELDVDCVHSEPLNQKHQLGSEIIQNEPAVNIARLPSDGVEENLQTISEDLTKVCPVEPSQSPPRDANKSCQAGEISCLQQSSSEQTPEFTPGISSHEPSVVNYKLGSQLEQTELGETSAGELGASLELVVKSSieqlkqpevpitipstktsaTKHLQSSSDLMEKKSCLEqsetppnyvannsaclgrkgkratkslknnytvrsligsdrvlrsrsgerpippessinladvnsigerkqkkrnkirrkkivadeysriRTHLRYLLNRINYEQNLIDAYSSEGWKGlsveklkpekelqRATSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAaaghnqdpnfGLASDDSDDNEYDPDgsatdeqdegdesssdgsssddsdftstsdeveapaddktylglssedseddeynpdapelddkvtqessssgsdftsdsEDLAAVLEDNrssgndegaasplghsngqryKDGGNNESLNNELLSIikpgqdgaapvygkrsserldyKKLYDETygnvpydssddeswsddggprkrtkstkegssaspdgktpvirrrkstkaakeklnetentpkrrgrpklntedsnispakshegcstpgsrgrrhrtsyrkLGEEVTQVIWLSADAFLLYCEIYNghhkdgnnnfiav
MSKAEHMGVSPSQVTSSTRDHSCLKQTTPEQMCKFCAECIHSEPLESKSLLGSEAVENEPRETSIPNSEKLQAFCGDVPDSSFTDHLAPPSEDMRKSTQTNKASCSQQNTSEQKHGTELMHNEQSEQKHQLCYQIVFDKPQATSLVDNATLQPVSKDVSKSSQTGNRQALDFLSGNRCNELDVDCVHSEPLNQKHQLGSEIIQNEPAVNIARLPSDGVEENLQTISEDLTKVCPVEPSQSPPRDANKSCQAGEISCLQQSSSEQTPEFTPGISSHEPSVVNYKLGSQLEQTELGETSAGELGASLELVVKSSIEQLKQPEVPITIPSTKTSATKHLQSSSDLMEKKSCLEQSETPPNYVANNSACLGRKGKRATKSLKNNYTVRSLIGSDRVLRSRSGERPIPPESSINLADVNSIGErkqkkrnkirrkkIVADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAAAGHNQDPNFGLAsddsddneydpdgsAtdeqdegdesssdgsssddsdftstsdeVEAPADDKTYLGLSSEDSEDDEYNPDAPELDDKVTQEssssgsdftsdsedLAAVLEDNRSSGNDEGAASPLGHSNGQRYKDGGnneslnnellsIIKPGQDGAAPVYGKRSSERLDYKKLYDETYGNVPYdssddeswsddGGPRKRTKSTKEGSSASPDGKTPVIRRRKSTKAAKEKLNETENTPKRRGRPKLNTEDSNISPAKSHEGCSTPGSRGRRHRTSYRKLGEEVTQVIWLSADAFLLYCEIYNGHHKDGNNNFIAV
*******************************MCKFCAECIH****************************************************************************************QLCYQIVFDKP*******************************FLSGNRCNELDVDCVH***************************************************************************************************************************************************************************************************************************************************KIVADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSV**************EILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPE********************************************************************************************************************************************************************************KLYDETY*****************************************************************************************************LGEEVTQVIWLSADAFLLYCEIYNGHHK*********
*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IRDLFQRLD********************EDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLV************************************************************************************************************************************************************************************************************************************************************************************************************************IWLSADAFLLYCEIYNGHHKDG***FI**
**********************CLKQTTPEQMCKFCAECIHSEPLESKSLLG**************NSEKLQAFCGDVPDSSFTDHLAPP**************************************HQLCYQIVFDKPQATSLVDNATLQP***********GNRQALDFLSGNRCNELDVDCVHSEPLNQKHQLGSEIIQNEPAVNIARLPSDGVEENLQTISEDLTKVCP***************QAGEIS*****************SSHEPSVVNYKLGSQLEQTELGETSAGELGASLELVVKSSIEQLKQPEVPITIPST*************************TPPNYVANNSACLGRKGKRATKSLKNNYTVRSLIGSDRVLRSRSGERPIPPESSINLADVNSI************RKKIVADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAAAGHNQDPNFGLASDDS****************************************EAPADDKTYLGLS**********************************SEDLAAVLED***********SPLGHSNGQRYKDGGNNESLNNELLSIIKPGQDGAAPVYGKRSSERLDYKKLYDETYGNVPYD******************************************************************************************TSYRKLGEEVTQVIWLSADAFLLYCEIYNGHHKDGNNNFIAV
**********************C*KQTTP*QMCKFCAECIHSEPLESKSLLGSEAVENEPRETSIPN*EKLQAFCG**PDSS*T*******************************GTEL*HN***EQKHQLCYQIVFDKPQATSLVDNATLQP************************C*******************************IARLPSDGVEENLQTIS**LTKV*PVE****************E***********************************************************************************************************************************************************************************VADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAAAG*******************************************************************************************************D*AAVLEDN**********************************************PVYGKRSSERLDYKKLYDETYGN************************************************************************************************YRKLGEEVTQVIWLSADAFLLYCEIYNGHHKDGNNNFIAV
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MSKAEHMGVSPSQVTSSTRDHSCLKQTTPEQMCKFCAECIHSEPLESKSLLGSEAVENEPRETSIPNSEKLQAFCGDVPDSSFTDHLAPPSEDMRKSTQTNKASCSQQNTSEQKHGTELMHNEQSEQKHQLCYQIVFDKPQATSLVDNATLQPVSKDVSKSSQTGNRQALDFLSGNRCNELDVDCVHSEPLNQKHQLGSEIIQNEPAVNIARLPSDGVEENLQTISEDLTKVCPVEPSQSPPRDANKSCQAGEISCLQQSSSEQTPEFTPGISSHEPSVVNYKLGSQLEQTELGETSAGELGASLELVVKSSIEQLKQPEVPITIPSTKTSATKHLQSSSDLMEKKSCLEQSETPPNYVANNSACLGRKGKRATKSLKNNYTVRSLIGSDRVLRSRSGERPIPPESSINLADVNSIGERKQKKRNKIRRKKIVADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIRDLFQRLDSLCAGGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAAAGHNQDPNFGLASDDSDDNEYDPDGSATDEQDEGDESSSDGSSSDDSDFTSTSDEVEAPADDKTYLGLSSEDSEDDEYNPDAPELDDKVTQESSSSGSDFTSDSEDLAAVLEDNRSSGNDEGAASPLGHSNGQRYKDGGNNESLNNELLSIIKPGQDGAAPVYGKRSSERLDYKKLYDETYGNVPYDSSDDESWSDDGGPRKRTKSTKEGSSASPDGKTPVIRRRKSTKAAKEKLNETENTPKRRGRPKLNTEDSNISPAKSHEGCSTPGSRGRRHRTSYRKLGEEVTQVIWLSADAFLLYCEIYNGHHKDGNNNFIAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query929 2.2.26 [Sep-21-2011]
Q04996723 Homeobox protein HAT3.1 O yes no 0.390 0.502 0.542 1e-100
P487861088 Pathogenesis-related home N/A no 0.372 0.318 0.521 3e-90
P46605719 Homeobox protein HOX1A OS N/A no 0.504 0.652 0.449 1e-87
P48785 796 Pathogenesis-related home no no 0.194 0.227 0.483 6e-50
Q96T23 1441 Remodeling and spacing fa yes no 0.063 0.040 0.439 1e-06
Q9SGH2 2176 Methyl-CpG-binding domain no no 0.090 0.038 0.366 5e-06
A6H619 1682 PHD and RING finger domai no no 0.055 0.030 0.409 7e-06
A8DZJ11441 Tyrosine-protein kinase B N/A no 0.090 0.058 0.336 8e-06
Q63625 1685 PHD and RING finger domai no no 0.055 0.030 0.409 1e-05
Q9P1Y6 1649 PHD and RING finger domai no no 0.049 0.027 0.433 2e-05
>sp|Q04996|HAT31_ARATH Homeobox protein HAT3.1 OS=Arabidopsis thaliana GN=HAT3.1 PE=2 SV=3 Back     alignment and function desciption
 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/407 (54%), Positives = 268/407 (65%), Gaps = 44/407 (10%)

Query: 413 VNSIGERKQKKRNKIRRKKIVA--DEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLS 470
            NS    + KK+NK   K  V   DEY+RI+  LRY LNRINYEQ+LIDAYS EGWKG S
Sbjct: 151 ANSTPVGRPKKKNKTMNKGQVREDDEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSS 210

Query: 471 VEKLKPEKELQRATSEILRRKLKIRDLFQRLDSLCA-GGFPKSLFDSEGQIDSEDIYCAK 529
           +EK++PEKEL+RAT EILRRKLKIRDLFQ LD+LCA G  P+SLFD++G+I SEDI+CAK
Sbjct: 211 LEKIRPEKELERATKEILRRKLKIRDLFQHLDTLCAEGSLPESLFDTDGEISSEDIFCAK 270

Query: 530 CGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVN 589
           CGSKDLS DNDIILCDG CDRGFHQYCLEPPL KEDIPPDDEGWLCPGCDCK D +DL+N
Sbjct: 271 CGSKDLSVDNDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGCDCKDDSLDLLN 330

Query: 590 ELQGTRLFITDNWEKVFPEAAA-----GHNQDPNFGLASDDS--------DDNEYDPDGS 636
           +  GT+  ++D+WEK+FPEAAA     G N D +      D         +DNE D DGS
Sbjct: 331 DSLGTKFSVSDSWEKIFPEAAAALVGGGQNLDCDLPSDDSDDEEYDPDCLNDNENDEDGS 390

Query: 637 ATDEQDEGDESSSDGSSSDDSDFTSTSDEV-----EAPADDKTYLGLSSEDSEDDEYNPD 691
                D+ +ES ++  SSD+++FTS SDE+     E     K  + L S+DSEDD+Y+PD
Sbjct: 391 -----DDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVMALPSDDSEDDDYDPD 445

Query: 692 APELDDKVTQESSSSGSDFTSDSEDLAAVLEDNRSSGNDEGAASPL---GHSNGQRYKDG 748
           AP  DD    +  SS SD TSD+EDL    + + +  N +   +PL   G    Q   D 
Sbjct: 446 APTCDD----DKESSNSDCTSDTEDLETSFKGDET--NQQAEDTPLEDPGRQTSQLQGDA 499

Query: 749 GNNESLNNELLSIIKPGQDGAAPVYGKRSSERLDYKKLYDETYGNVP 795
                    +L       DG A V  +R+ ERLDYKKLYDE Y NVP
Sbjct: 500 ---------ILESDVGLDDGPAGVSRRRNVERLDYKKLYDEEYDNVP 537
Binds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Arabidopsis thaliana (taxid: 3702)
>sp|P48786|PRH_PETCR Pathogenesis-related homeodomain protein OS=Petroselinum crispum GN=PRH PE=2 SV=1 Back     alignment and function description
>sp|P46605|HOX1A_MAIZE Homeobox protein HOX1A OS=Zea mays GN=HOX1A PE=2 SV=1 Back     alignment and function description
>sp|P48785|PRH_ARATH Pathogenesis-related homeodomain protein OS=Arabidopsis thaliana GN=PRH PE=2 SV=1 Back     alignment and function description
>sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1 Back     alignment and function description
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|A8DZJ1|BAZ1B_XENLA Tyrosine-protein kinase BAZ1B OS=Xenopus laevis GN=baz1b PE=2 SV=2 Back     alignment and function description
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
225429315968 PREDICTED: homeobox protein HAT3.1-like 0.659 0.633 0.533 1e-151
296083100977 unnamed protein product [Vitis vinifera] 0.659 0.627 0.533 1e-151
224060647930 predicted protein [Populus trichocarpa] 0.881 0.880 0.445 1e-140
255573075896 Homeobox protein HAT3.1, putative [Ricin 0.598 0.620 0.592 1e-135
356574291820 PREDICTED: homeobox protein HAT3.1-like 0.697 0.790 0.474 1e-135
356534303963 PREDICTED: uncharacterized protein LOC10 0.701 0.677 0.474 1e-133
449446105 1061 PREDICTED: uncharacterized protein LOC10 0.485 0.425 0.583 1e-130
449501740749 PREDICTED: homeobox protein HAT3.1-like 0.486 0.603 0.570 1e-129
147822101611 hypothetical protein VITISV_006312 [Viti 0.545 0.829 0.542 1e-128
16326660 HAT 3.1 [Arabidopsis thaliana] 0.398 0.560 0.551 4e-99
>gi|225429315|ref|XP_002269077.1| PREDICTED: homeobox protein HAT3.1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 351/658 (53%), Positives = 444/658 (67%), Gaps = 45/658 (6%)

Query: 275 HEPSVVNYKLGSQL--EQTELGETSAGE--LGASLELVVKSSI-EQLKQPEVPITIPSTK 329
           HEP+ ++  L + +  EQ+EL     G+  LG     V K+S+ E L  P       + K
Sbjct: 49  HEPAEISPVLSNCIVTEQSELPPEDVGDTILGLPPADVTKNSLTEHLGLPPED----AIK 104

Query: 330 TSATKHLQSSSDLMEKKSCLE---QSETPPNYVANNSACLGRKG--------KRATKSLK 378
              T+ L    +++ K S +E   QSE PP  VA  S  L + G        KR  K +K
Sbjct: 105 NDGTEQLGFFPEVVTKSSIIEKLGQSEPPPENVARYSG-LDQSGSAPKDLANKRTAKLVK 163

Query: 379 NNYTVRSLIGSDRVLRSRSGERPIPPESSINLADVNSIGERKQKKRNKIRRKKIVADEYS 438
             Y +RS +   RVLRSRS E+P   + S N   VN+   R++K R K R  K  ADE++
Sbjct: 164 RKYKLRSSVSGSRVLRSRSQEKPKASQPSDNF--VNASASRERKGRKKKRMNKTTADEFA 221

Query: 439 RIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIRDLF 498
           RIR HLRYLLNR++YEQNLIDAYS+EGWKG SVEKLKPEKELQRA+SEI RRKL+IRDLF
Sbjct: 222 RIRKHLRYLLNRMSYEQNLIDAYSAEGWKGQSVEKLKPEKELQRASSEISRRKLQIRDLF 281

Query: 499 QRLDSLCA-GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCL 557
           Q LDSLCA G FP+SLFDSEGQIDSEDI+CAKC SKD+SADNDIILCDGACDRGFHQ+CL
Sbjct: 282 QHLDSLCAEGRFPESLFDSEGQIDSEDIFCAKCESKDMSADNDIILCDGACDRGFHQFCL 341

Query: 558 EPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPE-AAAGHNQD 616
           EPPLLKE+IPPDDEGWLCP CDCKVDC+DL+N+ QGT+L + D+WEKVFPE AAAG+NQD
Sbjct: 342 EPPLLKEEIPPDDEGWLCPACDCKVDCMDLLNDSQGTKLSVIDSWEKVFPEAAAAGNNQD 401

Query: 617 PNFGLASDDSDDNEYDPDGSATDEQDEGDESSSDG-------SSSDDSDFTSTSDEVEAP 669
            N G +SDDS+DN+YDPD    DE+ +GD+SSSD          SD+SDFTS SD++   
Sbjct: 402 NNSGFSSDDSEDNDYDPDCPEVDEKGQGDKSSSDKFDESDEFDESDESDFTSASDDMVVS 461

Query: 670 ADDKTYLGLSSEDSEDDEYNPDAPELDDKVTQESSSSGSDFTSDSEDLAAVLEDNRSSGN 729
            +++  LGL S+DSEDD+++PDAPE+D++V Q   SS SDFTSDSED  A L+    S N
Sbjct: 462 PNNEQCLGLPSDDSEDDDFDPDAPEIDEQVNQ--GSSSSDFTSDSEDFTATLDRRNFSDN 519

Query: 730 DEGAASPLGHSNGQRYKDGGNNESLNNELLSIIK--PGQDGAAPVYGKRSSERLDYKKLY 787
           ++G        + QR       ++L +ELLS+++   GQD  AP+  KR  ERLDYKKL+
Sbjct: 520 EDGL-------DEQRRFGRKKKDTLKDELLSVLESNSGQDN-APLSAKRHVERLDYKKLH 571

Query: 788 DETYGNVPYDSSDDESWSDDGGPRKRTKSTKEGSSASPDGKTPVIRRRKSTKAAKEKLNE 847
           DE YGNV  DSSDDE W+++  PRKR   +   +S SP+G T +     +TK  K  L  
Sbjct: 572 DEAYGNVSSDSSDDEDWTENVIPRKRKNLSGNVASVSPNGNTSITENGTNTKDIKHDLEA 631

Query: 848 TENTPKRRGRPKLNTEDSNISPAKSHEGCSTPGSRGRRH-RTSYRKLGEEVTQVIWLS 904
              TPKRR R KLN E +N S A+SH+   +PGS G +  ++SY+KLGE VT+ ++ S
Sbjct: 632 AGCTPKRRTRQKLNFESTNNSLAESHKDSRSPGSTGEKSGQSSYKKLGEAVTERLYKS 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083100|emb|CBI22504.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224060647|ref|XP_002300247.1| predicted protein [Populus trichocarpa] gi|222847505|gb|EEE85052.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573075|ref|XP_002527467.1| Homeobox protein HAT3.1, putative [Ricinus communis] gi|223533107|gb|EEF34865.1| Homeobox protein HAT3.1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356574291|ref|XP_003555282.1| PREDICTED: homeobox protein HAT3.1-like [Glycine max] Back     alignment and taxonomy information
>gi|356534303|ref|XP_003535696.1| PREDICTED: uncharacterized protein LOC100306715 [Glycine max] Back     alignment and taxonomy information
>gi|449446105|ref|XP_004140812.1| PREDICTED: uncharacterized protein LOC101204775 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449501740|ref|XP_004161446.1| PREDICTED: homeobox protein HAT3.1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147822101|emb|CAN68079.1| hypothetical protein VITISV_006312 [Vitis vinifera] Back     alignment and taxonomy information
>gi|16326|emb|CAA49263.1| HAT 3.1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
TAIR|locus:2090694723 HAT3.1 [Arabidopsis thaliana ( 0.301 0.387 0.548 6.2e-91
TAIR|locus:2005538 796 PRHA "pathogenesis related hom 0.193 0.226 0.480 9.2e-46
RGD|1311245 1444 Rsf1 "remodeling and spacing f 0.074 0.047 0.421 1.2e-11
ZFIN|ZDB-GENE-091204-206 1369 si:dkey-21n12.3 "si:dkey-21n12 0.077 0.052 0.4 3.1e-07
RGD|708360 1685 Phrf1 "PHD and ring finger dom 0.066 0.036 0.375 1.8e-06
UNIPROTKB|Q63625 1685 Phrf1 "PHD and RING finger dom 0.066 0.036 0.375 1.8e-06
UNIPROTKB|F1STY8 1344 RSF1 "Uncharacterized protein" 0.123 0.085 0.333 2e-06
UNIPROTKB|I3LTW3113 I3LTW3 "Uncharacterized protei 0.077 0.637 0.370 2.2e-06
MGI|MGI:2444959 4903 Mll3 "myeloid/lymphoid or mixe 0.350 0.066 0.263 3.1e-06
UNIPROTKB|F1P8R2 1434 RSF1 "Uncharacterized protein" 0.123 0.080 0.333 3.8e-06
TAIR|locus:2090694 HAT3.1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 163/297 (54%), Positives = 197/297 (66%)

Query:   317 KQPEVPITIPSTKTSATKHLQSSSDLMEKKSCLEQSETPPNYVANNSAC-LGRKGKRATK 375
             +Q   P T+     + TK   S  +L+    C  Q E      A+ S+  LG  G+R   
Sbjct:    71 EQKPTPQTVKKDSNTNTKFSGSHRELVIGLPCRGQFEIHNRSRASTSSKRLGGGGER--- 127

Query:   376 SLKNNYTVRSLIGSDRVLRSRSGERPIPPESSINLADVNSIGEXXXXXXXXXXXXXIVAD 435
                 N    S     R  RS+    P    SS+ +A+   +G                 D
Sbjct:   128 ----NVLFAS---HKRAQRSKEDAGP----SSV-VANSTPVGRPKKKNKTMNKGQVREDD 175

Query:   436 EYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEKLKPEKELQRATSEILRRKLKIR 495
             EY+RI+  LRY LNRINYEQ+LIDAYS EGWKG S+EK++PEKEL+RAT EILRRKLKIR
Sbjct:   176 EYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKIR 235

Query:   496 DLFQRLDSLCA-GGFPKSLFDSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQ 554
             DLFQ LD+LCA G  P+SLFD++G+I SEDI+CAKCGSKDLS DNDIILCDG CDRGFHQ
Sbjct:   236 DLFQHLDTLCAEGSLPESLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQ 295

Query:   555 YCLEPPLLKEDIPPDDEGWLCPGCDCKVDCIDLVNELQGTRLFITDNWEKVFPEAAA 611
             YCLEPPL KEDIPPDDEGWLCPGCDCK D +DL+N+  GT+  ++D+WEK+FPEAAA
Sbjct:   296 YCLEPPLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAA 352
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0051276 "chromosome organization" evidence=RCA
GO:0003677 "DNA binding" evidence=IDA
TAIR|locus:2005538 PRHA "pathogenesis related homeodomain protein A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1311245 Rsf1 "remodeling and spacing factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-206 si:dkey-21n12.3 "si:dkey-21n12.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|708360 Phrf1 "PHD and ring finger domains 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q63625 Phrf1 "PHD and RING finger domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1STY8 RSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTW3 I3LTW3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2444959 Mll3 "myeloid/lymphoid or mixed-lineage leukemia 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8R2 RSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I002624
hypothetical protein (930 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
pfam0062851 pfam00628, PHD, PHD-finger 1e-13
smart0024947 smart00249, PHD, PHD zinc finger 1e-09
COG4547620 COG4547, CobT, Cobalamin biosynthesis protein CobT 1e-04
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 0.002
pfam04147 809 pfam04147, Nop14, Nop14-like family 0.002
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 526 YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCK 581
           YCA CG  D   D +++LCDG CDR FH  CL PPL  E+IP  +  W CP C  K
Sbjct: 1   YCAVCGKVD--DDGELLLCDG-CDRWFHLACLGPPLEPEEIPEGE--WYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 929
KOG4299613 consensus PHD Zn-finger protein [General function 99.94
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.55
KOG1244336 consensus Predicted transcription factor Requiem/N 98.53
KOG0825 1134 consensus PHD Zn-finger protein [General function 98.44
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 98.31
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 98.21
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.1
COG5141669 PHD zinc finger-containing protein [General functi 97.98
KOG0954 893 consensus PHD finger protein [General function pre 97.93
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.91
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 97.72
KOG0956 900 consensus PHD finger protein AF10 [General functio 97.67
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 97.51
KOG1512381 consensus PHD Zn-finger protein [General function 97.5
KOG0383 696 consensus Predicted helicase [General function pre 97.47
KOG1973274 consensus Chromatin remodeling protein, contains P 97.39
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.39
KOG0957707 consensus PHD finger protein [General function pre 96.97
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.75
KOG0957 707 consensus PHD finger protein [General function pre 94.31
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 93.93
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 92.51
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 89.17
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 87.16
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 86.85
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 86.57
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 85.97
COG4547620 CobT Cobalamin biosynthesis protein CobT (nicotina 85.31
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 80.64
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.94  E-value=5.4e-27  Score=263.75  Aligned_cols=348  Identities=28%  Similarity=0.382  Sum_probs=243.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhhhhHhhccCCccccccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002384          433 VADEYSRIRTHLRYLLNRINYEQNLIDAYSSEGWKGLSVEK---------LKPEKELQRATSEILRRKLKIRDLFQRLDS  503 (929)
Q Consensus       433 ~~dE~sRiR~rVRylL~kmk~EQnliDAY~~EGWkgqSREK---------irPekELqRAkkeIlK~K~~IRqLf~rLds  503 (929)
                      .+...-+...+++|++..+...|++++.|..+||++.+.+|         ++|.+++.++..+|..++..++.+.+||+.
T Consensus       150 ~~p~~~r~~n~lk~~t~~~~~~~~li~~~s~e~~~a~~~~k~~~r~~~~~~~~~~~sn~tt~~i~~r~~~~~s~~~hl~t  229 (613)
T KOG4299|consen  150 EVPDSFRDKNSLKYLTSLQNDVQELIDISSTEGWKASSDEKPPGRPFELLIRPAKESNVTTKEILNRKLTYRSLPRHLET  229 (613)
T ss_pred             cCCCcchhhhhhhhhhccccccccccchhcccccccCCcccCcccchhhhcCcchhhccchhhhhhhhhhhhhhhhhhhh
Confidence            45667788899999999999999999999999999999999         999999999999999999999999999998


Q ss_pred             hcc-CCCCCCccCCCCCcccccc--ccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002384          504 LCA-GGFPKSLFDSEGQIDSEDI--YCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDC  580 (929)
Q Consensus       504 L~s-gs~pkSL~dsDGeid~EDd--~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~  580 (929)
                      +.. +..+......++.+..++.  ||..|++.+..  ++|||||| |+++|||+||+|||..+.||.|.  |||+.|.+
T Consensus       230 ~s~~~t~~e~r~~~D~~~~~~~~~~fCsaCn~~~~F--~~~i~CD~-Cp~sFH~~CLePPl~~eniP~g~--W~C~ec~~  304 (613)
T KOG4299|consen  230 ESKEGTVEEKRRERDKNISVEDIEDFCSACNGSGLF--NDIICCDG-CPRSFHQTCLEPPLEPENIPPGS--WFCPECKI  304 (613)
T ss_pred             hhhhccchhhhhhhccccccCCHHHHHHHhCCcccc--ccceeecC-CchHHHHhhcCCCCCcccCCCCc--cccCCCee
Confidence            886 6666666666777666665  99999999876  78999996 99999999999999999999997  99999999


Q ss_pred             CCchhhHHh--------hhcCcccc--ccC--cccccchhhhc---CCCCCCCCCCCCCCCCCCCCCCCCC----CCccC
Q 002384          581 KVDCIDLVN--------ELQGTRLF--ITD--NWEKVFPEAAA---GHNQDPNFGLASDDSDDNEYDPDGS----ATDEQ  641 (929)
Q Consensus       581 K~d~ldlLn--------a~qgtefs--l~~--s~rdvFpEvAa---G~~~d~~~d~pSDdsdDdDyDP~~~----e~d~~  641 (929)
                      +..+..+.+        -.+++.|.  +..  +|..+||+...   |.-....-+|.+|++++.+|||...    +-++.
T Consensus       305 k~~in~~~~t~~~~~~~~~i~t~~~~~IDs~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~  384 (613)
T KOG4299|consen  305 KSVINPKMETLSNRGTVVDIFTQFVSKIDSHNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDEN  384 (613)
T ss_pred             eeecccchhhhhhccchHHHHHHHHHhhhccchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCcc
Confidence            999888777        55556665  444  48889998876   5545777889999999999999332    33333


Q ss_pred             CCCCCCCCC----CCCCCCCCCCCCCcc----ccCCCCCc-cccCCCCCCC--CCCCCCCCCccchhhhhcccCCCCCCC
Q 002384          642 DEGDESSSD----GSSSDDSDFTSTSDE----VEAPADDK-TYLGLSSEDS--EDDEYNPDAPELDDKVTQESSSSGSDF  710 (929)
Q Consensus       642 ~~~e~s~s~----~ssSdds~f~s~sd~----~e~~~~~~-ddLGLPSeDS--EDDDyDP~gPdsd~~~k~eSss~~SDF  710 (929)
                      +-+. |+..    +=..+.-.+....+.    +-..++-+ +-.-|||..+  +...+.|..+...-...  .+.  ++-
T Consensus       385 g~~s-sg~~~~~~~c~~~~~~s~~vl~c~ye~s~~h~dc~~~~~~~ps~ss~~k~p~~s~~v~~~~~~~e--t~n--~~~  459 (613)
T KOG4299|consen  385 GIDS-SGTELLCGRCSKTQTESVVVLDCQYEQSPEHPDCKDDSKALPSLSSKWKCPRVSPYVVSCPSGIE--TEN--NLS  459 (613)
T ss_pred             CCCc-cCcchhhcccCcchhhhhhhhccccccCCCCccccchhhhCCCCcccccCCCCCCCccccccccc--ccc--ccc
Confidence            3332 2221    000110001111111    11112222 5668999999  88888888777655433  223  333


Q ss_pred             CCchHHHHHHhhccCCCCCCCCCCCCCCCCCCccccCCCCCcccchhhhhccCCCCCccccccCcccccccchhhhhHhh
Q 002384          711 TSDSEDLAAVLEDNRSSGNDEGAASPLGHSNGQRYKDGGNNESLNNELLSIIKPGQDGAAPVYGKRSSERLDYKKLYDET  790 (929)
Q Consensus       711 TSDSdDf~a~i~~~~~sg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~dQd~~~pvs~rRqverLDYKKLydea  790 (929)
                      +.+..+|-.....  .++.-..-+.+..       ..+.++.+++...  ....+     -+..+|+||+.|||.||.|.
T Consensus       460 ~~~t~~le~~~n~--~~~e~~~~~~~~~-------~p~~qti~~qs~~--~~~~s-----~~~~~~~ve~~d~kl~~~e~  523 (613)
T KOG4299|consen  460 VHQTPALENKGNG--DCAEPLKKIPCGT-------APGVQTIQLQSDG--PHLSS-----RRLKIRNVESRDYKLLYLEP  523 (613)
T ss_pred             cccchhhhhcccc--ccccchhcccccC-------CCcceeeecccCC--ccccc-----cccceeeccCcccccccccc
Confidence            7888877643332  2322211111111       1233333333210  01111     45678999999999999999


Q ss_pred             hCCCCCCCCCCCCCCC
Q 002384          791 YGNVPYDSSDDESWSD  806 (929)
Q Consensus       791 yg~~~sDSSddEdws~  806 (929)
                      |++..--....-.|-.
T Consensus       524 ~~~~~lv~~~~~~~~k  539 (613)
T KOG4299|consen  524 IAASGLVNHTVLIIVK  539 (613)
T ss_pred             ccccccccccchhhhh
Confidence            9987555555555533

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
3ask_A226 Structure Of Uhrf1 In Complex With Histone Tail Len 7e-04
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 527 CAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGC 578
           C  CG +     +  ++CD  CD  FH YCL+PPL    +P +DE W CP C
Sbjct: 177 CHLCGGR--QDPDKQLMCD-ECDMAFHIYCLDPPL--SSVPSEDE-WYCPEC 222

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 3e-18
2yt5_A66 Metal-response element-binding transcription facto 8e-18
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 2e-14
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 2e-13
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 2e-13
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 3e-13
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 3e-13
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 8e-13
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 1e-12
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 2e-12
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 2e-12
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 3e-12
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 4e-12
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 4e-12
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 1e-11
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 3e-11
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 5e-11
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 6e-11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 6e-10
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-09
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 8e-09
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 2e-09
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 2e-08
2k16_A75 Transcription initiation factor TFIID subunit 3; p 3e-08
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 4e-08
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 1e-07
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 9e-06
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 2e-05
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 3e-05
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 5e-05
1wem_A76 Death associated transcription factor 1; structura 8e-05
1x4i_A70 Inhibitor of growth protein 3; structural genomics 9e-05
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 2e-04
1we9_A64 PHD finger family protein; structural genomics, PH 2e-04
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-04
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 3e-04
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 7e-04
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 8e-04
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 9e-04
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
 Score = 79.3 bits (195), Expect = 3e-18
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 515 DSEGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWL 574
            ++       + C  C    +++ N ++ C   C   +HQ C +P +  +++      W 
Sbjct: 7   GADDFAMEMGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHKPQVTDKEVNDPRLVWY 65

Query: 575 CPGCDCK 581
           C  C  +
Sbjct: 66  CARCTRQ 72
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 99.28
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 99.27
2yt5_A66 Metal-response element-binding transcription facto 99.24
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 99.21
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.17
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.17
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.14
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 99.13
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.12
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 99.11
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.11
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 99.1
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.1
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.1
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.08
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 99.08
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 99.07
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 98.96
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 98.93
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 98.92
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.87
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.83
2k16_A75 Transcription initiation factor TFIID subunit 3; p 98.79
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.72
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.71
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.53
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.44
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 98.41
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.28
1weu_A91 Inhibitor of growth family, member 4; structural g 98.27
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.24
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.16
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.11
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.09
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 98.04
1we9_A64 PHD finger family protein; structural genomics, PH 98.04
1wee_A72 PHD finger family protein; structural genomics, PH 97.78
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.75
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 97.65
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.63
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.59
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 97.56
1wew_A78 DNA-binding family protein; structural genomics, P 97.51
1wem_A76 Death associated transcription factor 1; structura 97.46
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 97.46
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.34
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.33
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 97.26
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 97.26
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 97.23
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 97.12
1wil_A89 KIAA1045 protein; ring finger domain, structural g 96.93
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 96.84
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 96.48
3kv5_D488 JMJC domain-containing histone demethylation prote 96.15
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 95.58
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 94.08
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 92.57
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 80.46
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
Probab=99.28  E-value=2.4e-12  Score=115.52  Aligned_cols=57  Identities=32%  Similarity=0.825  Sum_probs=48.7

Q ss_pred             CCCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384          517 EGQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD  583 (929)
Q Consensus       517 DGeid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d  583 (929)
                      +...+.++++|.+|+.+     ++||+||+ |+++||++|+.|||.  .+|.|+  |||+.|.....
T Consensus        18 ~~~~d~n~~~C~vC~~~-----g~LL~CD~-C~~~fH~~Cl~PpL~--~~P~g~--W~C~~C~~~~~   74 (88)
T 1fp0_A           18 FGTLDDSATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVLPD   74 (88)
T ss_dssp             CCSSSSSSSCCSSSCSS-----SCCEECTT-SSCEECTTSSSTTCC--CCCSSS--CCCCSCCCCCS
T ss_pred             ccccCCCCCcCcCcCCC-----CCEEECCC-CCCceecccCCCCCC--CCcCCC--cCCccccCCCc
Confidence            34456677899999987     57999995 999999999999996  599998  99999987654
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 929
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 8e-14
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 1e-13
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 2e-10
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 3e-10
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 2e-09
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 3e-08
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 8e-07
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 1e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 0.001
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 0.002
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 8e-14
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPG 577
           G +D     C  C         D+++C+  C+  FH  C  P L  +D+P ++  W C  
Sbjct: 1   GTLDDSATICRVCQKPG-----DLVMCNQ-CEFCFHLDCHLPAL--QDVPGEE--WSCSL 50

Query: 578 CDCKVDCIDLVNELQGTRL 596
           C    D  +   +LQ  +L
Sbjct: 51  CHVLPDLKEEDVDLQACKL 69
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.08
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.94
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.94
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.78
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.16
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.14
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.05
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.04
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.82
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.6
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.28
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 93.22
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 84.6
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.7e-11  Score=100.25  Aligned_cols=56  Identities=32%  Similarity=0.863  Sum_probs=46.3

Q ss_pred             CCccccccccccccccccCCCCCeEEecCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002384          518 GQIDSEDIYCAKCGSKDLSADNDIILCDGACDRGFHQYCLEPPLLKEDIPPDDEGWLCPGCDCKVD  583 (929)
Q Consensus       518 Geid~EDd~C~VCg~~ds~ddndLLLCDG~CdRaFHq~CLdPPL~kesIPeGDe~WfCp~C~~K~d  583 (929)
                      |..+....+|.+|+++     ++||+||+ |+++||++|+.|||.  .+|.++  |+|+.|.....
T Consensus         1 g~~Dd~c~~C~~C~~~-----~~ll~Cd~-C~~~~H~~C~~p~l~--~~p~~~--W~C~~C~~~~~   56 (70)
T d1fp0a1           1 GTLDDSATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVLPD   56 (70)
T ss_dssp             CSSSSSSSCCSSSCSS-----SCCEECTT-SSCEECTTSSSTTCC--CCCSSS--CCCCSCCCCCS
T ss_pred             CCcCCCCCCCCCCCCc-----CEEEECCC-CChhhccccCCCCcC--cCCCCC--EECcCCcCcCc
Confidence            4455666789999876     57999995 999999999999996  589887  99999976543
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure