Citrus Sinensis ID: 002426

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920----

MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG

ccccEEEHHHHHHHHHcccccccccEEEEEcccccccccccccEEHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEEEccccccccEEEEEccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHcccccccccccccEEEEEcccccccccccccccccHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccEEEEcccccccccccccccccccHHHHccccccccccccccccccccEEEccccccEEEEEcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccc

ccEEEEEEEEEHHHccccHHHHHcEEEEEHHEEEEccccccEEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEcccccccEEEEEccccEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEEHHHHHccccccccEEEEEEEEEccccccEEcccHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHccHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEcEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEcHHHHHHHccccccccHHHccccccccHHHccccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccHHccccHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHEEEccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHcccccHHccc

MQLRIVVFSCSVgmvssesglfdvdviVLDEvhylsdisrgtVWEEIIIYCPKEVQIICLSATVANADELAGWigqihgktelitssrrpvpltwyfstktALLPLLdekgkhmnrklsLNYLQlstsevkpykdggsrrrnsrkhadmnsnnivtsfgqhqlsknsinairrsqvpQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIlypdavrePAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRtasgriqlTSNELFQMAGRagrrgidnrghvvlvqtpyegAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDfenghlpflclqykdsegvehsvpavylgkfdsldssklknmasiNDSFALNRlaqsngddydtqdvkpsyyvalgsdntwytFTEKWIKTVYRigfpnvalaqgdalpRETMSLLLDKGEMLWEKLAdsefgglwcmegsletwswslnvpvlsslsesdeVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHEtraldintqvifplgeTAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRlwknnssiyepsttVINVINVLDEHRSSFLELQekhgveipccldsqfSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAqipklpdvdqrlqknavdasnvmdrppiselag

MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQihgktelitssrrpVPLTWYFSTKTALLPLLDEKGKHMNRKlslnylqlstsevkpykdggsrrrnsrkhadmnsnnivTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATEtlaaginmpARTAVLSSLSKRtasgriqltsnELFQMAGRagrrgidnrGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETdvltseisddaidrkSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNValaqgdalPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKkkiartegfkeykkivdtvkfteekikrlkarskrltkrieqiepsgwkeflrISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRlwknnssiyepstTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLaqipklpdvdqrlqknavdasnvmdrppiselag

MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPvlsslsesdevlHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMdcalddgdlarllrrTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG

**LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL********************************************INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS**********IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL*********************LVEQSFGNYVGSNVMLAAKDELCKIQKETDVL*********************************************MELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL**************FALN*********YDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR**RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL****************************

MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS***********************************************************VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL**************SLEEARKLVEQSFGNYVG*************IQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR**************SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFAL****************KPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPR*************WEKL******************SWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSK************GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGI***************TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG

MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK**************HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG

*QLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS**********************************************QVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKExxxxxxxxxxxxxxxxxxxxxMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFExxxxxxxxxxxxxxxxxxxxxIARTEGFKExxxxxxxxxxxxxxxxxxxxxxxxxxxxIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		924	2.2.26 [Sep-21-2011]
B9DFG3		1171	DEAD-box ATP-dependent RN	yes	no	0.988	0.779	0.724	0.0
Q9ZBD8		920	Probable helicase HelY OS	yes	no	0.454	0.456	0.333	3e-56
Q10701		906	Probable helicase HelY OS	yes	no	0.387	0.395	0.362	6e-55
P35207		1287	Antiviral helicase SKI2 O	yes	no	0.377	0.271	0.340	7e-55
O59801		1213	Putative ATP-dependent RN	yes	no	0.442	0.337	0.319	3e-54
Q15477		1246	Helicase SKI2W OS=Homo sa	yes	no	0.353	0.262	0.367	1e-51
Q23223		1026	mRNA transport homolog 4	no	no	0.345	0.310	0.342	1e-44
Q9CZU3		1040	Superkiller viralicidic a	no	no	0.338	0.300	0.340	3e-43
P42285		1042	Superkiller viralicidic a	no	no	0.338	0.300	0.340	3e-43
P47047		1073	ATP-dependent RNA helicas	no	no	0.354	0.305	0.311	4e-42

>sp\|B9DFG3\|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2	Back alignment and function desciption

 Score = 1393 bits (3606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/917 (72%), Positives = 786/917 (85%), Gaps = 4/917 (0%)

Query: 11   SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
            SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 256  SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDEL 315

Query: 71   AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
            AGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNYLQLS SE 
Sbjct: 316  AGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEA 375

Query: 131  K--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRS 188
            +     DG  +RR+ ++  D + NN+V +   + LSKN IN IRRSQVPQ+ DTLWHL+ 
Sbjct: 376  RFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQISDTLWHLQG 434

Query: 189  RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
            ++MLPAIWFIFNRRGCDAAVQY+E+  LLD+CE SEVELALK+FR+LYPDAVRE A KGL
Sbjct: 435  KNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGL 494

Query: 249  LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
            L+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSK+  + 
Sbjct: 495  LRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNE 554

Query: 309  RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
            RI+L  NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PLVSQFTASYG
Sbjct: 555  RIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYG 614

Query: 369  MVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKI 428
            MVLNL+AG+KV   S+ ++  K LQAGRSLEEA+KLVE+SFGNYV SNV +AAK EL +I
Sbjct: 615  MVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEI 674

Query: 429  QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSA 488
              + ++L+SEISD+AID+KSR+LLS   YKE+  L+EEL+ EKR R E RRRMEL+RF A
Sbjct: 675  DNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRRRMELERFLA 734

Query: 489  LKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR 548
            LK +LK  E G+LPF+CL++KDSEG E SVPAVYLG  DS   SKL+ M S+++SFALN 
Sbjct: 735  LKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMSLDESFALNL 794

Query: 549  LAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
            +      D+    +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA GDALPRE 
Sbjct: 795  IEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALALGDALPREI 854

Query: 608  MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
            M  LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVPVLSSLS+ DEVLHMS EY +
Sbjct: 855  MKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDN 914

Query: 668  AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
            A + YKEQR+K++RLKKK++R+EGF+EYKKI++    T EK+KRLKARS+RL  R+EQIE
Sbjct: 915  AAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRRLINRLEQIE 974

Query: 728  PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
            PSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRNK L+DLKP 
Sbjct: 975  PSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRNKALVDLKPP 1034

Query: 788  QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
            QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQEKH V IPCC
Sbjct: 1035 QLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQEKHEVMIPCC 1094

Query: 848  LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
            LD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLLRRTIDLLAQIPKLPD+D  LQ++A
Sbjct: 1095 LDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPDIDPVLQRSA 1154

Query: 908  VDASNVMDRPPISELAG 924
              A+++MDRPPISELAG
Sbjct: 1155 AAAADIMDRPPISELAG 1171

Essential protein required during embryogenesis. Involved in post-transcriptional gene silencing. Modulates the determination of cell fate. Necessary for normal plasmodesmata (PD) development and aperture regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|Q9ZBD8\|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY PE=3 SV=1	Back alignment and function description

>sp\|Q10701\|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1	Back alignment and function description

>sp\|P35207\|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2	Back alignment and function description

>sp\|O59801\|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1	Back alignment and function description

>sp\|Q15477\|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3	Back alignment and function description

>sp\|Q23223\|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1	Back alignment and function description

>sp\|Q9CZU3\|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1	Back alignment and function description

>sp\|P42285\|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3	Back alignment and function description

>sp\|P47047\|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		924
296086480		1064	unnamed protein product [Vitis vinifera]	0.989	0.859	0.809	0.0
225424807		1174	PREDICTED: DEAD-box ATP-dependent RNA he	0.989	0.778	0.809	0.0
255558340		1161	helicase, putative [Ricinus communis] gi	0.989	0.787	0.782	0.0
291464071		1159	increased size exclusion limit 2 [Nicoti	0.978	0.779	0.763	0.0
356497806		1162	PREDICTED: DEAD-box ATP-dependent RNA he	0.987	0.784	0.764	0.0
357486299		1201	ATP-dependent RNA helicase DOB1 [Medicag	0.982	0.756	0.748	0.0
449452156		1193	PREDICTED: LOW QUALITY PROTEIN: DEAD-box	0.981	0.760	0.743	0.0
449486574		1168	PREDICTED: DEAD-box ATP-dependent RNA he	0.981	0.776	0.744	0.0
222422993		1171	AT1G70070 [Arabidopsis thaliana]	0.989	0.780	0.724	0.0
15223032		1171	DEAD-box ATP-dependent RNA helicase ISE2	0.988	0.779	0.724	0.0

>gi\|296086480\|emb\|CBI32069.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1513 bits (3916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/917 (80%), Positives = 819/917 (89%), Gaps = 3/917 (0%)

Query: 11   SVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADEL 70
            SVGMVSS SGLF VDVIVLDEVHYLSDI RGTVWEEI+IYCPKEVQ+ICLSATVAN DEL
Sbjct: 148  SVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIYCPKEVQLICLSATVANPDEL 207

Query: 71   AGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEV 130
            AGWI QIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEKGK MNRKLSL+YLQ   S  
Sbjct: 208  AGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGKSMNRKLSLSYLQNYASGD 267

Query: 131  KPYKDGGSRRRNSRK-HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
              YKD  SRRRN +K  +DM+ ++  +  GQ  LSKN IN IRRSQVPQV+DTLWHL++R
Sbjct: 268  NSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDINTIRRSQVPQVMDTLWHLKAR 327

Query: 190  DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
            DMLPAIWFIF+R+GCDA+VQYLEDCNLLDE EMSEV+LALKRFR+ YPDAVRE A+KGLL
Sbjct: 328  DMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLALKRFRLQYPDAVRESAVKGLL 387

Query: 250  KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
            +GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+SSLSKR  SGR
Sbjct: 388  QGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGESGR 447

Query: 310  IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM 369
            IQL+SNEL QMAGRAGRRGID  GH VLVQTPY+GAEECCKLLFAGVEPLVSQFTASYGM
Sbjct: 448  IQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECCKLLFAGVEPLVSQFTASYGM 507

Query: 370  VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQ 429
            VLNLLAGAKV    +ES+D+K LQAGR+LEEARKLVEQSFGNYVGSNVMLAAK+EL K++
Sbjct: 508  VLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSFGNYVGSNVMLAAKEELTKVE 567

Query: 430  KETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSAL 489
            KE +VL+SE++DDAIDRKSR+LLSE AY E+ANLQEEL+AEKR RTELRRRMEL+R SAL
Sbjct: 568  KEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRAEKRLRTELRRRMELRRMSAL 627

Query: 490  KDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR- 548
            K +LK+ ENGHLPF+CLQYKDSE V+H VPAVYLGK DS D SK+KNM   ND FALN  
Sbjct: 628  KLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSFDGSKVKNMVYTNDCFALNAV 687

Query: 549  LAQSNGDDYDTQ-DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRET 607
            + + N DD D+Q + KPSYYVALGSDN+WY FTEKWIKTVYR GFPNVALAQGDALPRE 
Sbjct: 688  VTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTVYRTGFPNVALAQGDALPREI 747

Query: 608  MSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHD 667
            M  LLDK ++ WE+LA SE GGLWC+EGSLETWSWSLNVPVLSSLSE DEVL MS  Y++
Sbjct: 748  MRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVPVLSSLSEDDEVLKMSQAYYE 807

Query: 668  AVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIE 727
            AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D  KFTEEKIKRLKARS RL+ RIEQIE
Sbjct: 808  AVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLSSRIEQIE 867

Query: 728  PSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
            PSGWKEFL++SNVIHETRALDINT +IFPLGETAAAIRGENELWLAMVLR+K+LL LKPA
Sbjct: 868  PSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGENELWLAMVLRSKVLLGLKPA 927

Query: 788  QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
            QLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LDE R+S L+LQEKH V+IPCC
Sbjct: 928  QLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKHDVQIPCC 987

Query: 848  LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNA 907
            LDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTID+LAQIPKLPD+D  LQ NA
Sbjct: 988  LDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDIDPLLQSNA 1047

Query: 908  VDASNVMDRPPISELAG 924
            + ASNVMDRPPISELAG
Sbjct: 1048 MTASNVMDRPPISELAG 1064

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225424807\|ref\|XP_002267766.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255558340\|ref\|XP_002520197.1\| helicase, putative [Ricinus communis] gi\|223540689\|gb\|EEF42252.1\| helicase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|291464071\|gb\|ADE05573.1\| increased size exclusion limit 2 [Nicotiana benthamiana]	Back alignment and taxonomy information

>gi\|356497806\|ref\|XP_003517748.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|357486299\|ref\|XP_003613437.1\| ATP-dependent RNA helicase DOB1 [Medicago truncatula] gi\|355514772\|gb\|AES96395.1\| ATP-dependent RNA helicase DOB1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449452156\|ref\|XP_004143826.1\| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449486574\|ref\|XP_004157336.1\| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|222422993\|dbj\|BAH19480.1\| AT1G70070 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|15223032|ref|NP_177164.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana] gi|298351833|sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2; AltName: Full=Protein PIGMENT DEFECTIVE 317; Flags: Precursor gi|332196892|gb|AEE35013.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		924
TAIR\|locus:2020573		1171	EMB25 "EMBRYO DEFECTIVE 25" [A	0.994	0.784	0.697	0.0
UNIPROTKB\|Q10701		906	helY "Probable helicase HelY"	0.469	0.479	0.353	3.2e-51
SGD\|S000004390		1287	SKI2 "Ski complex component an	0.257	0.184	0.346	2.2e-48
POMBASE\|SPCC550.03c		1213	SPCC550.03c "Ski complex RNA h	0.372	0.283	0.348	4.3e-48
WB\|WBGene00008502		1266	skih-2 [Caenorhabditis elegans	0.535	0.390	0.314	1.8e-45
ZFIN\|ZDB-GENE-010430-5		1249	skiv2l "superkiller viralicidi	0.361	0.267	0.376	1.6e-44
UNIPROTKB\|F1RQW4		1246	SKIV2L "Uncharacterized protei	0.366	0.272	0.374	4.2e-43
UNIPROTKB\|F5H7B0		1053	SKIV2L "Helicase SKI2W" [Homo	0.366	0.321	0.371	4.2e-43
UNIPROTKB\|F8VS23		1053	SKIV2L "Helicase SKI2W" [Homo	0.366	0.321	0.371	4.2e-43
UNIPROTKB\|B4DM01		1088	SKIV2L "cDNA FLJ57529, highly	0.366	0.311	0.371	5e-43

TAIR\|locus:2020573 EMB25 "EMBRYO DEFECTIVE 25" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3339 (1180.4 bits), Expect = 0., P = 0.
 Identities = 646/926 (69%), Positives = 767/926 (82%)

Query:     3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
             LR +++  SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSA
Sbjct:   249 LRNMLYQ-SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSA 307

Query:    63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
             TVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNY
Sbjct:   308 TVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNY 367

Query:   123 LQLSTSEVKPYKDG--GSRRRNSRKHA-DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
             LQLS SE + ++D   G R+R S+K   D + NN+V +   + LSKN IN IRRSQVPQ+
Sbjct:   368 LQLSASEAR-FRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQI 425

Query:   180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 239
              DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+  LLD+CE SEVELALK+FR+LYPDA
Sbjct:   426 SDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDA 485

Query:   240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
             VRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+S
Sbjct:   486 VRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIS 545

Query:   300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
             SLSK+  + RI+L  NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PL
Sbjct:   546 SLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPL 605

Query:   360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
             VSQFTASYGMVLNL+AG+KV   S+ ++  K LQAGRSLEEA+KLVE+SFGNYV SNV +
Sbjct:   606 VSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTV 665

Query:   420 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 479
             AAK EL +I  + ++L+SEISD+AID+KSR+LLS   YKE+  L+EEL+ EKR R E RR
Sbjct:   666 AAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRR 725

Query:   480 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 539
             RMEL+RF ALK +LK  E G+LPF+CL++KDSEG E SVPAVYLG  DS   SKL+ M S
Sbjct:   726 RMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMS 785

Query:   540 INDSFALNRLAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 598
             +++SFALN +      D+    +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA
Sbjct:   786 LDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALA 845

Query:   599 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPXXXXXXXXXXX 658
              GDALPRE M  LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVP           
Sbjct:   846 LGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEV 905

Query:   659 XHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
              HMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++    T EK+KRLKARS+R
Sbjct:   906 LHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRR 965

Query:   719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
             L  R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRN
Sbjct:   966 LINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRN 1025

Query:   779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
             K L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQE
Sbjct:  1026 KALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQE 1085

Query:   839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQIPKLPD 898
             KH V IPCCLD QFSGMVEAWASGL+W+EMMM               TIDLLAQIPKLPD
Sbjct:  1086 KHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPD 1145

Query:   899 VDQRLQKNAVDASNVMDRPPISELAG 924
             +D  LQ++A  A+++MDRPPISELAG
Sbjct:  1146 IDPVLQRSAAAAADIMDRPPISELAG 1171

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=NAS;IMP

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0016441 "posttranscriptional gene silencing" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

UNIPROTKB\|Q10701 helY "Probable helicase HelY" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

SGD\|S000004390 SKI2 "Ski complex component and putative RNA helicase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

POMBASE\|SPCC550.03c SPCC550.03c "Ski complex RNA helicase Ski2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

WB\|WBGene00008502 skih-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-010430-5 skiv2l "superkiller viralicidic activity 2 (S. cerevisiae homolog)-like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RQW4 SKIV2L "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F5H7B0 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F8VS23 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DM01 SKIV2L "cDNA FLJ57529, highly similar to Helicase SKI2W (EC 3.6.1.-)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DFG3	ISE2_ARATH	3, ., 6, ., 4, ., 1, 3	0.7241	0.9880	0.7796	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	0.946
3rd Layer	3.6.4	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028926001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (1064 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		924
COG4581		1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	1e-107
pfam08148		178	pfam08148, DSHCT, DSHCT (NUC185) domain	4e-34
COG1204		766	COG1204, COG1204, Superfamily II helicase [General	1e-18
PRK01172		674	PRK01172, PRK01172, ski2-like helicase; Provisiona	3e-17
PRK02362		737	PRK02362, PRK02362, ski2-like helicase; Provisiona	2e-16
PRK00254		720	PRK00254, PRK00254, ski2-like helicase; Provisiona	4e-15
COG1202		830	COG1202, COG1202, Superfamily II helicase, archaea	6e-12
COG1204		766	COG1204, COG1204, Superfamily II helicase [General	1e-11
PRK01172		674	PRK01172, PRK01172, ski2-like helicase; Provisiona	1e-10
PRK02362		737	PRK02362, PRK02362, ski2-like helicase; Provisiona	4e-10
PRK00254		720	PRK00254, PRK00254, ski2-like helicase; Provisiona	5e-09
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	1e-08
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	1e-08
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	1e-08
COG1202		830	COG1202, COG1202, Superfamily II helicase, archaea	2e-08
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-06
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	2e-05
COG1205		851	COG1205, COG1205, Distinct helicase family with a	4e-04
TIGR04121		803	TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA	0.001
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	0.002
COG1201		814	COG1201, Lhr, Lhr-like helicases [General function	0.002

>gnl\|CDD\|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  355 bits (914), Expect = e-107
 Identities = 244/914 (26%), Positives = 371/914 (40%), Gaps = 131/914 (14%)

Query: 23   DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
            D++ +V DEVHY+ D  RG VWEE+II  P  V+ + LSATV NA+E A WI ++H +  
Sbjct: 229  DIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPI 288

Query: 82   ELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVKPYKDGGSRR 140
             ++++  RPVPL  +      L  L+DEK K       S N      SE     D G   
Sbjct: 289  HVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVG 348

Query: 141  RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
            R +R+                       +A   +  P++++    L   ++LPAI F F+
Sbjct: 349  RYARRTKA-----------------LRGSAKGPAGRPEIVN---KLDKDNLLPAIVFSFS 388

Query: 201  RRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PA-----IKGLLKGVA 253
            RRGC+ A Q L   +L L E +   +   +        +  RE P         LL+G+A
Sbjct: 389  RRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIA 448

Query: 254  AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
             HHAG LP  K  +EELFQ GLVKVVFATET A GINMPART V +SLSK   +G   L+
Sbjct: 449  VHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLS 508

Query: 314  SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQFTASYGMVLN 372
              E  QM+GRAGRRG+D  G V++++ P+E        L +G  +PL SQF  SY M+LN
Sbjct: 509  PGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN 568

Query: 373  LLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKET 432
            LL   +V                  L+ A  L+E+SF  +  S  +    ++L +++KE 
Sbjct: 569  LL---RVE----------------GLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKEL 609

Query: 433  DVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDI 492
            + + +E+     +   +  L                  ++ R +L   M L         
Sbjct: 610  NDIATELFGTDENDAPKLSLDY----------------EKLRKKLNEEMRL-----QAAG 648

Query: 493  LKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQS 552
            L+    G +            V+       L     L  +K       +    L  L + 
Sbjct: 649  LRALRKGRV------------VQIKDGLAALFWGRLLKLTKRYTTKLTDHELYLAVLVEP 696

Query: 553  NGDDYDTQD-VKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLL 611
            N D    +  VK   ++    ++ W       I  VY +      L     +PR  +S  
Sbjct: 697  NADFSFPRPLVKAMPHMN--RESRWLVKILFRISFVY-LLNATEILELILTMPRRLLSRQ 753

Query: 612  LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVEN 671
                       A +                   N  +L      + V+ M  +       
Sbjct: 754  GKLRRGEPSNEAIAAGL--------------DGNEKIL------ENVVEMKIQ------- 786

Query: 672  YKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG- 730
                   V+ LK +  R    +      D     E  I   +     L   IE +  S  
Sbjct: 787  --VPELTVSLLKLRFGRYHLSENPLMNFDGA---ERLI-ENELLLSDLQAEIEDLSSSIE 840

Query: 731  WKEFLRISNVIHETRALDINT---QVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPA 787
               FL     + E            V+   G  AA I  E+EL L  ++ +    DL+P 
Sbjct: 841  ALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEISSEDELLLTELIFSGEFNDLEPE 900

Query: 788  QLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC 847
            +LAA+ ++ V E  K       +   E +  + + +  L E      + Q    +EI   
Sbjct: 901  ELAALLSAFVFEE-KTDDGTAEA--PEITPALRDALLRLLELARKLNKDQNSSQIEIYPE 957

Query: 848  LDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQR 902
            L+    G+   V  WA GL++ ++    +L +G   R+ RR  +LL Q+ K   V  +  
Sbjct: 958  LNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPE 1017

Query: 903  LQKNAVDASNVMDR 916
            L++ A  A   + R
Sbjct: 1018 LEEKAYRAIQEIRR 1031

Length = 1041

>gnl\|CDD\|219729 pfam08148, DSHCT, DSHCT (NUC185) domain	Back alignment and domain information

>gnl\|CDD\|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|100801 PRK01172, PRK01172, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|235032 PRK02362, PRK02362, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|234702 PRK00254, PRK00254, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|100801 PRK01172, PRK01172, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|235032 PRK02362, PRK02362, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|234702 PRK00254, PRK00254, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		924
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	100.0
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	100.0
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	100.0
PF08148		180	DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961	100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
COG1204		766	Superfamily II helicase [General function predicti	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	100.0
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	100.0
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	99.96
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.95
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.94
PRK13767		876	ATP-dependent helicase; Provisional	99.94
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.93
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.93
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.93
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.93
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.93
PTZ00424		401	helicase 45; Provisional	99.93
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.92
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.92
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.92
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.92
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.92
PTZ00110		545	helicase; Provisional	99.92
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.92
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.91
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.91
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.91
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.91
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.9
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.9
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.9
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.89
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.88
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.86
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.86
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.86
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.86
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.86
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.85
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.85
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.83
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.83
PHA02653		675	RNA helicase NPH-II; Provisional	99.83
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.83
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.81
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.81
PRK10689		1147	transcription-repair coupling factor; Provisional	99.81
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.8
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.8
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.8
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.8
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.8
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.79
KOG0327		397	consensus Translation initiation factor 4F, helica	99.79
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.79
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.77
KOG4284		980	consensus DEAD box protein [Transcription]	99.77
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.77
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.77
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.77
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.71
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.7
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	99.7
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.7
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.67
COG1205		851	Distinct helicase family with a unique C-terminal	99.66
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	99.64
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	99.64
PHA02558		501	uvsW UvsW helicase; Provisional	99.63
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.63
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.61
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.6
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.6
PRK05298		652	excinuclease ABC subunit B; Provisional	99.6
PF13234		268	rRNA_proc-arch: rRNA-processing arch domain; PDB:	99.55
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	99.54
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.52
PRK13766		773	Hef nuclease; Provisional	99.5
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.49
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.46
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.45
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.45
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.44
PRK09401		1176	reverse gyrase; Reviewed	99.44
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.44
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.43
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.42
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.41
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	99.4
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.39
PRK14701		1638	reverse gyrase; Provisional	99.38
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	99.37
PRK09694		878	helicase Cas3; Provisional	99.36
PRK04914		956	ATP-dependent helicase HepA; Validated	99.33
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.3
KOG0354		746	consensus DEAD-box like helicase [General function	99.29
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.29
PRK05580		679	primosome assembly protein PriA; Validated	99.26
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.24
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.22
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.22
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.18
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.11
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.09
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.05
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.04
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.04
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.01
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	98.9
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	98.9
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	98.83
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	98.61
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	98.4
PRK12904		830	preprotein translocase subunit SecA; Reviewed	98.34
PRK13107		908	preprotein translocase subunit SecA; Reviewed	98.31
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.27
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	98.0
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	97.87
COG1198		730	PriA Primosomal protein N' (replication factor Y)	97.75
COG4096		875	HsdR Type I site-specific restriction-modification	97.64
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	97.61
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.53
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	97.45
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	97.29
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	97.24
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	97.19
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	97.14
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	96.99
KOG1123		776	consensus RNA polymerase II transcription initiati	96.92
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.76
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	96.61
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	96.52
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	96.37
PRK12326		764	preprotein translocase subunit SecA; Reviewed	96.35
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	96.23
smart00487		201	DEXDc DEAD-like helicases superfamily.	96.15
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	95.5
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	95.32
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	94.39
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	94.37
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	94.32
PRK14873		665	primosome assembly protein PriA; Provisional	93.05
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	92.81
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	92.6
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	91.16
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	90.33
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	89.98
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	89.55
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	89.41
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	89.07
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	87.63
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	87.62
CHL00122		870	secA preprotein translocase subunit SecA; Validate	85.44
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	83.87
PF13871		278	Helicase_C_4: Helicase_C-like	82.01
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	80.64
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	80.58
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	80.49

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=9.1e-149  Score=1247.39  Aligned_cols=777  Identities=25%  Similarity=0.368  Sum_probs=631.6

Q ss_pred             ceeeeeccccCCcCCCCCCCCccEEEEccccccCCCCchHHHHHHHHhCCCCccEEEEcccCCCHHHHHHHhcccCC-ce
Q 002426            3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT   81 (924)
Q Consensus         3 ~~~~MLy~~~~~~~~~~~L~~v~~VVlDE~H~l~D~~RG~v~Eeii~~lp~~~qiV~LSATi~N~~e~a~wL~~~~~-~~   81 (924)
                      |+=||||||+      +.+++|.||||||+|||.|.+||+||||.|+.||+++++|||||||||+.+||+|++.+|. ||
T Consensus       221 ILRsMLYRGS------EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPc  294 (1041)
T KOG0948|consen  221 ILRSMLYRGS------EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPC  294 (1041)
T ss_pred             HHHHHHhccc------hHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCc
Confidence            4568999975      5589999999999999999999999999999999999999999999999999999999976 99


Q ss_pred             EEecCCCCcccceEEecc--cccccccccccccccchhhh--hhhhhhccccCCCCcCCCCcccccccccCCCCCccccc
Q 002426           82 ELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLS--LNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTS  157 (924)
Q Consensus        82 ~vv~s~~RpvpL~~~~~~--~~~l~~l~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (924)
                      |||+|++||+||+||+++  ++++|.++|++++|....+.  +..+...+..+ +++...++.+++..+++         
T Consensus       295 HVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~-~~~~~~~k~~kG~~~~~---------  364 (1041)
T KOG0948|consen  295 HVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD-GKKKANKKGRKGGTGGK---------  364 (1041)
T ss_pred             eEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc-cccccccccccCCcCCC---------
Confidence            999999999999999765  78999999999998765442  33332222221 11111111111111110         


Q ss_pred             cccccCchhhhhhhhccCchhHHHHHHHHHhCCCCCeEEEEcChHhHHHHHHHhhhCCCCCHHhHHHHHHHHHHHHhhCC
Q 002426          158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP  237 (924)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p~IVF~~Sr~~ce~~a~~L~~~~l~~~~e~~~i~~~l~~~~~~~~  237 (924)
                                     .....+++.+++++..+++.|+|||+|||++||.+|.++.+++|++++|++.+..++++++..++
T Consensus       365 ---------------~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls  429 (1041)
T KOG0948|consen  365 ---------------GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS  429 (1041)
T ss_pred             ---------------CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC
Confidence                           01234788899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccch-----hHHhhhccceEEEcCCCCHHHHHHHHHHhhCCCeeEEEEccccccccCCCCceEEEecceecCCCCcccC
Q 002426          238 DAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL  312 (924)
Q Consensus       238 ~~~~~-----~~~~~L~~GVa~hH~gl~~~~R~~VE~lF~~G~ikVL~AT~tla~GINmPa~~VVI~~~~k~dg~~~~pl  312 (924)
                      ++++.     .++++|+||||+|||||+|+.|+.||.+|++|++||||||+||++|+||||+||||++++||||..++|+
T Consensus       430 eeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwi  509 (1041)
T KOG0948|consen  430 EEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWI  509 (1041)
T ss_pred             hhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeee
Confidence            98876     5667899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCCccEEEEEeCCCCCHHHHHHHHhCCCcccccccCCchhHHHHHhhhhhhccccCchhhHHHH
Q 002426          313 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL  392 (924)
Q Consensus       313 s~~ey~Qm~GRAGR~G~D~~G~vill~~~~~~~~~~~~l~~~~~~pL~S~~~~~~~~~Lnll~~~~v~~~~~~~~~~~~~  392 (924)
                      +.+||+||+|||||||+|..|+||++.+..+++..+..++.|.++||.|+|+.+|||+||||+                 
T Consensus       510 ssGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlR-----------------  572 (1041)
T KOG0948|consen  510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLR-----------------  572 (1041)
T ss_pred             cccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHH-----------------
Confidence            999999999999999999999999999999999999999999999999999999999999998                 


Q ss_pred             HhCCCHHHHHHHHHhhHHhhhcchhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHhhhccHHHHHHHHHHHHHHHHHHH
Q 002426          393 QAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKR  472 (924)
Q Consensus       393 ~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~  472 (924)
                      .++.+|   +.++++||+|||+....+..+.++.+++++++.+.       +.+       +..+.+|+.|+.++.+..+
T Consensus       573 vEei~p---e~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~-------i~~-------E~~v~~yh~l~~ql~~~~k  635 (1041)
T KOG0948|consen  573 VEEISP---EYMLERSFHQFQNYKALPDIEEKLKQLEEELDSIN-------IPN-------EEEVKEYHDLELQLEKYGK  635 (1041)
T ss_pred             HccCCH---HHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhccc-------CCC-------hHHHHHHHHHHHHHHHHHH
Confidence            457776   88999999999999887777777777766666554       222       6689999999999987743


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhccCCCcceEEeeeeCCCCcEeecceEEecccCCcchhhhhhc---------------
Q 002426          473 FRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNM---------------  537 (924)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------------  537 (924)
                         ++++.+ .            -|..++||++      .||.+.+   ..+ ..++.||.+.++               
T Consensus       636 ---~i~~~~-~------------~P~~~l~fLq------~GRlV~v---~~g-~~d~~WGvvv~f~k~~~~~~~~~~~~p  689 (1041)
T KOG0948|consen  636 ---DIREVI-T------------HPKYCLPFLQ------PGRLVKV---KVG-GDDFFWGVVVNFIKRKNSSKNSDQVGP  689 (1041)
T ss_pred             ---HHHHHH-c------------Ccchhccccc------CCceEEE---ecC-CCCCceeEEEEEEeccCCCCCccccCC
Confidence               334432 1            1677888876      3332211   111 112223333221               


Q ss_pred             --cccchhhhhhhhccCCCCCCCCCCCCCccccccCCCCcee--eeccceeeeEee--cCCCCccccccCCCChHHHhhh
Q 002426          538 --ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWY--TFTEKWIKTVYR--IGFPNVALAQGDALPRETMSLL  611 (924)
Q Consensus       538 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~  611 (924)
                        .|+++.++.|.....+...  .....|+.   .+..+.|.  ++....+..|+.  ..+|      ++..|.+.+.++
T Consensus       690 ~e~Y~vdvll~~~~~~~~~~~--~~~~~p~~---~~ek~~~~vvpv~l~~i~~is~~r~~iP------~dl~~~d~r~~~  758 (1041)
T KOG0948|consen  690 HESYIVDVLLHCSTESSPVGA--KKVNVPPR---PNEKGEMEVVPVLLTLIDAISSIRLYIP------KDLRSVDARLSV  758 (1041)
T ss_pred             CcceEEEEEeeeecccccccc--CcCCCCCC---CCCCCceEEEeeeHHHHhhhhHHHhcCc------ccccCcchHHHH
Confidence              4566666666432211100  00011110   11223333  455555666655  2233      233333332221


Q ss_pred             hhhhhhHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHHHHHHHHHHHhccC
Q 002426          612 LDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEG  691 (924)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~  691 (924)
                             .+.  .+++..           ++++|+|+|||+.+      |.+.    ...+....++++.|+.++..||.
T Consensus       759 -------~k~--v~e~~~-----------rfp~gip~LdPv~d------M~I~----~~~~~~~~~k~e~lE~~l~~hp~  808 (1041)
T KOG0948|consen  759 -------LKA--VQEVKS-----------RFPDGIPLLDPVKD------MNIK----DVEFKKLVKKIESLEARLESHPL  808 (1041)
T ss_pred             -------HHH--HHHHHH-----------hcCCCCCCcChhhc------cCcc----chHHHHHHHHHHHHHHhhccCcc
Confidence                   111  233333           45889999999985      8887    45667888999999999999999


Q ss_pred             CchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHhHcCcccCCCCccChhhHHHHhhhCCchH
Q 002426          692 FKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENEL  770 (924)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyld~~~~~vt~kGr~a~~I~~~~EL  770 (924)
                      |..+.  +++.++.+.++.+|..++++|+++++..+.. +++|..+|++||++|||++.++ +|.+|||+||||+++|||
T Consensus       809 ~k~~~--~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~dd-vie~KGrvACEIsSgDEL  885 (1041)
T KOG0948|consen  809 HKSSE--LEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDD-VIELKGRVACEISSGDEL  885 (1041)
T ss_pred             cCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCC-eEEEcceEEEEecccchH
Confidence            98765  3556668999999999999999999999887 5666669999999999999885 999999999999999999


Q ss_pred             HHHHHHHhcccCCCCHHhHHHHHhhhhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---
Q 002426          771 WLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCC---  847 (924)
Q Consensus       771 lltell~~g~~~~L~p~~lAAllS~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~l~~~~~---  847 (924)
                      ++|||||+|+|++|+|+|+||+||||||++   +.    .....+.++|+.++.+|++.|++|++|+.+|+++++.+   
T Consensus       886 lLTEliFnG~Fndl~~eq~aaLLSCfVf~e---ks----~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv  958 (1041)
T KOG0948|consen  886 LLTELIFNGIFNDLPVEQAAALLSCFVFQE---KS----SEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYV  958 (1041)
T ss_pred             HHHHHHHhccccCCCHHHHHHHHhheeehh---cc----cccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHH
Confidence            999999999999999999999999999988   55    23557789999999999999999999999999999975   


Q ss_pred             --CCchHHHHHHHHhCCCCHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHHHhccCCCcccc
Q 002426          848 --LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDRPPISE  921 (924)
Q Consensus       848 --~~~~l~~~v~~Wa~G~~f~~i~~~t~l~eGdivR~~rRl~elL~Ql~~~~~~--~~~L~~~a~~A~~~i~R~~v~~  921 (924)
                        |+|+||++||+||+|+||.+||++|++|||+|||++|||+||||||.+||++  |.+|.+|+.+|+..|+||+||+
T Consensus       959 ~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFA 1036 (1041)
T KOG0948|consen  959 ESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFA 1036 (1041)
T ss_pred             HhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeeh
Confidence              9999999999999999999999999999999999999999999999999987  9999999999999999999986

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases []	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		924
4a4z_A		997	Crystal Structure Of The S. Cerevisiae Dexh Helicas		1e-55
3l9o_A		1108	Crystal Structure Of Mtr4, A Co-Factor Of The Nucle		3e-43
2xgj_A		1010	Structure Of Mtr4, A Dexh Helicase Involved In Nucl		4e-43
2va8_A		715	Dna Repair Helicase Hel308 Length = 715		9e-25
2p6r_A		702	Crystal Structure Of Superfamily 2 Helicase Hel308		3e-16
2zj2_A		720	Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt		5e-14
4f92_B		1724	Brr2 Helicase Region S1087l Length = 1724		4e-10
4f91_B		1724	Brr2 Helicase Region Length = 1724		4e-10

>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997