Citrus Sinensis ID: 002460
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 919 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | yes | no | 0.926 | 0.859 | 0.561 | 0.0 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.912 | 0.788 | 0.310 | 1e-121 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.908 | 0.839 | 0.296 | 1e-116 | |
| Q9CA56 | 895 | Pentatricopeptide repeat- | no | no | 0.822 | 0.844 | 0.310 | 1e-109 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.797 | 0.844 | 0.309 | 1e-107 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.727 | 0.900 | 0.311 | 1e-107 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.801 | 0.835 | 0.311 | 1e-107 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.789 | 0.706 | 0.298 | 1e-107 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.752 | 0.838 | 0.321 | 1e-105 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.755 | 0.779 | 0.308 | 1e-105 |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/960 (56%), Positives = 663/960 (69%), Gaps = 109/960 (11%)
Query: 55 QWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKM 114
QWF LR+AI++SDL+LGK THARIL + P+RFL NNL++MYS+CGSL YARR+FDKM
Sbjct: 41 QWFGFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKM 100
Query: 115 PDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGY 174
PDRDL+SWNSILAAYA S E EN+ + F LFR LR+ + +TSR+TL+P+LKLCL SGY
Sbjct: 101 PDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 160
Query: 175 VWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRA 234
VWASE+ HGYA KIGL DEFV+GALVNIY KFGK++E K LF+ M RDVVLW +ML+A
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA 220
Query: 235 YAENGFGEEVFHLFVDLHRSGLCPDDESVQC---VLGVISDLGKRHEEQVQAYAIKLLLY 291
Y E GF EE L H SGL P++ +++ + G SD G QV+++A
Sbjct: 221 YLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAG-----QVKSFA------ 269
Query: 292 NNN-----SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTD 346
N N S ++ NK LS YL G ++CF +M+ S+V+ D VTF++ LA D
Sbjct: 270 NGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVD 329
Query: 347 NLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMG------------------------- 381
+L LGQQ+H LK G + V NSLINMY K+
Sbjct: 330 SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIA 389
Query: 382 ------------CV------CGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTV 423
C+ CGL+ DQ+T+ SVL+A+SSLPEGL LSKQ+HVHAIK + V
Sbjct: 390 GIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNV 449
Query: 424 ADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHM 483
+DSFVSTALID Y RN M EAE LFE + FDL WNAM+ GY S++ HK L+LF+ M
Sbjct: 450 SDSFVSTALIDAYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALM 508
Query: 484 HTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAM 543
H GER D+ T+AT K CG L + QGKQ+HAYA+KSG++LDL VSSGILDMYVKCG M
Sbjct: 509 HKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 568
Query: 544 VDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKAS 603
AQ F+ IP PDDVAWTTMISGC++NGEE+ A ++ QMRL GV+PDEFT A L KAS
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628
Query: 604 SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWN 663
SCLTALEQGRQIHAN +KL+C++DPFVG SLVDMYAKCG+I+DAY LFK+++M N WN
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688
Query: 664 AMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREK 723
AMLVGLAQHG G+ETL+LF+ MK+ G++PD VTFIGVLSACS++GLVSEAY++ M
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 724 YGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKW 783
YGI+PE+EHYS L DALGRAG K+A LI SM EASASM+R LL ACRVQGDTETGK
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 784 VAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA----------- 832
VA KL+ LEP DSSAYVLLSN++AAA++WD++ AR MK VKKDP
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Query: 833 ------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLAR 880
+LI+ KV+ +I+ IK+ GYVP+TDF L+DVEEEEKERALYYHSEKLA
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928
Query: 881 AYGLISTPPSSVI---------------------LSNKEPLY--ANRFHHLRDGMCPCAD 917
A+GL+STPPS+ I + N+E + ANRFH +DG+C C D
Sbjct: 929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 300/966 (31%), Positives = 456/966 (47%), Gaps = 127/966 (13%)
Query: 72 GKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAYAH 131
G+ H++IL + L+ L Y G L A ++FD+MP+R + +WN ++ A
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELA- 162
Query: 132 SGEGNAENVTEGFRLF-RSLRESITFTSRLTLAPLLKLCLSSGYVW-ASETVHGYALKIG 189
+ + E F LF R + E++T + T + +L+ C + E +H L G
Sbjct: 163 ----SRNLIGEVFGLFVRMVSENVT-PNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 217
Query: 190 LVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFV 249
L V L+++YS+ G + A+ +FDG++ +D W M+ ++N E LF
Sbjct: 218 LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 277
Query: 250 DLHRSGLCPDDESVQCVL----------------GVISDLGKRHEEQVQAYAIKLLLYNN 293
D++ G+ P + VL G++ LG + V + L +
Sbjct: 278 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 337
Query: 294 N-------------SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALA 340
N + V +N ++G Q G A+E F M ++ DS T +
Sbjct: 338 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 397
Query: 341 AVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK--------------------- 379
A + L GQQ+H T K GF S + +L+N+Y+K
Sbjct: 398 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457
Query: 380 ---MGCVCGLRTD-------------------QFTLASVLRASSSLPEGLHLSKQIHVHA 417
M GL D Q+T S+L+ L + L L +QIH
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD-LELGEQIHSQI 516
Query: 418 IKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKAL 477
IK + +++V + LID+Y + G + A + G D+ +W MI GY N KAL
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576
Query: 478 ELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMY 537
F M G R DE+ + AV AC L LK+G+Q+HA A SGF DL + ++ +Y
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 636
Query: 538 VKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFA 597
+CG + ++ F A D++AW ++SG +G + AL ++ +M G+ + FTF
Sbjct: 637 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 696
Query: 598 ILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR 657
VKA+S ++QG+Q+HA + K S+ V +L+ MYAKCG+I DA F ++ +
Sbjct: 697 SAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 756
Query: 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENF 717
N V WNA++ ++HG G E L F+ M V P+ VT +GVLSACS+ GLV + F
Sbjct: 757 NEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816
Query: 718 HLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGD 777
M +YG+ P+ EHY +VD L RAG A E I MP + A + R LL AC V +
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKN 876
Query: 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP------ 831
E G++ A L+ LEP DS+ YVLLSN++A + +WD R +MK K VKK+P
Sbjct: 877 MEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIE 936
Query: 832 -----------------ADLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYH 874
AD I + L KR E GYV D +L +++ E+K+ ++ H
Sbjct: 937 VKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIH 996
Query: 875 SEKLARAYGLISTPPSSVI---------------------LSNKEPLY--ANRFHHLRDG 911
SEKLA ++GL+S P + I +SN+E + A RFHH G
Sbjct: 997 SEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGG 1056
Query: 912 MCPCAD 917
C C D
Sbjct: 1057 ACSCKD 1062
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 290/977 (29%), Positives = 468/977 (47%), Gaps = 142/977 (14%)
Query: 76 HARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAYAHSGEG 135
H+R+ + D +L NNL+ Y G V AR++FD+MP R+ +SW I++ Y+ +GE
Sbjct: 24 HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83
Query: 136 NAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWA--SETVHGYALKIGLVWD 193
E R + + F+++ +L+ C G V +HG K+ D
Sbjct: 84 K-----EALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVD 138
Query: 194 EFVSGALVNIYSK-FGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLH 252
VS L+++Y K G + A F ++ ++ V W ++ Y++ G F +F +
Sbjct: 139 AVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQ 198
Query: 253 RSGLCPDD---------------------ESVQCVL---GVISDL-------GKRHEEQV 281
G P + E + C + G+++DL +
Sbjct: 199 YDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGS 258
Query: 282 QAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAA 341
+YA K+ N V N + G ++ A + F++M S + ++++ L++
Sbjct: 259 LSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSS 317
Query: 342 -----VAGTDNLNLGQQIHGTTLKSGFYSAVI-VGNSLINMYSKMGCVCGLR------TD 389
+A L G+++HG + +G ++ +GN L+NMY+K G + R TD
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD 377
Query: 390 Q-------------------------------------FTLASVLRASSSLPEGLHLSKQ 412
+ FTL S L + +SL L +Q
Sbjct: 378 KDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWA-KLGQQ 436
Query: 413 IHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNN 472
IH ++K + VS AL+ +Y G + E +F + D +WN++I S
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSER 496
Query: 473 S-HKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSS 531
S +A+ F + +G++L+ IT ++ + A L + GKQ+H A+K+ + +
Sbjct: 497 SLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN 556
Query: 532 GILDMYVKCGAMVDAQSIFNDIPAP-DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV 590
++ Y KCG M + IF+ + D+V W +MISG + N AL + M +G
Sbjct: 557 ALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQR 616
Query: 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650
D F +A ++ A + + LE+G ++HA ++ SD VG +LVDMY+KCG ++ A
Sbjct: 617 LDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRF 676
Query: 651 FKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSVTFIGVLSACSYTGL 709
F M +RN+ WN+M+ G A+HG GEE LKLFE MK G PD VTF+GVLSACS+ GL
Sbjct: 677 FNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGL 736
Query: 710 VSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALL 769
+ E +++F M + YG+ P +EH+S + D LGRAG + + I MP + + + R +L
Sbjct: 737 LEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVL 796
Query: 770 GA-CRVQG-DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827
GA CR G E GK AE L LEP ++ YVLL N++AA +W+D+ AR +MK +V
Sbjct: 797 GACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADV 856
Query: 828 KKDP-----------------------ADLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEE 864
KK+ AD+I+ K++ L +++++ GYVP T F L D+E+
Sbjct: 857 KKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQ 916
Query: 865 EEKERALYYHSEKLARAYGLISTPPSSVILSNKEPLY----------------------- 901
E KE L YHSEKLA A+ L + S++ + + L
Sbjct: 917 ENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILR 976
Query: 902 -ANRFHHLRDGMCPCAD 917
+NRFHH +DG C C+D
Sbjct: 977 DSNRFHHFQDGACSCSD 993
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 260/838 (31%), Positives = 412/838 (49%), Gaps = 82/838 (9%)
Query: 68 DLLLGKSTHARILNSSQIP-DRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSIL 126
+L K A +L +P D FLT +L++ YS GS+ A +LFD +P D++S N ++
Sbjct: 63 NLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMI 122
Query: 127 AAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYAL 186
+ Y E R F + + ++ ++ C + SE V + +
Sbjct: 123 SGYKQH-----RLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTI 177
Query: 187 KIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFH 246
K+G + E V AL++++SK + +A +F +V W ++ N VF
Sbjct: 178 KMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFD 237
Query: 247 LFVDLHRSGLCPDDESVQCVLGVISDLGK-RHEEQVQAYAIK------------LLLYNN 293
LF ++ PD + VL + L K R + VQA IK + LY
Sbjct: 238 LFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAK 297
Query: 294 ---------------NSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVA 338
N +VV W LSGY + D A+E F M S V+ ++ T
Sbjct: 298 CGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSV 357
Query: 339 LAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVC-------------- 384
++A + Q+H KSGFY V +LI+MYSK G +
Sbjct: 358 ISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQR 417
Query: 385 ------------------------------GLRTDQFTLASVLRASSSLPEGLHLSKQIH 414
GLRTD+F++ S+L S+ + L+L KQ+H
Sbjct: 418 QNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLL----SVLDCLNLGKQVH 473
Query: 415 VHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSH 474
+ +K+ V D V ++L +Y + GS+ E+ LF+ D A W +MI G+
Sbjct: 474 GYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLR 533
Query: 475 KALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGIL 534
+A+ LFS M G DE T+A + C L +GK++H Y +++G + + + S ++
Sbjct: 534 EAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALV 593
Query: 535 DMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594
+MY KCG++ A+ +++ +P D V+ +++ISG +G ++ M +SG D F
Sbjct: 594 NMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSF 653
Query: 595 TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM 654
+ ++KA++ G Q+HA + K+ ++P VG SL+ MY+K G+I+D F Q+
Sbjct: 654 AISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQI 713
Query: 655 DMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAY 714
+ + + W A++ AQHG E L+++ MK G +PD VTF+GVLSACS+ GLV E+Y
Sbjct: 714 NGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESY 773
Query: 715 ENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRV 774
+ + M + YGIEPE HY +VDALGR+GR +EA I +M + A + LL AC++
Sbjct: 774 FHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKI 833
Query: 775 QGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832
G+ E GK A+K + LEP D+ AY+ LSNI A +WD+V R MK V+K+P
Sbjct: 834 HGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPG 891
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust.
Identities = 269/870 (30%), Positives = 421/870 (48%), Gaps = 137/870 (15%)
Query: 175 VWASETVHGYALKIGLVWDEFVSG-ALVNIYSKFGKIREAKF-----LFDGMQERDVVLW 228
+W ++ + K + + +G A V IY FG + ++ LFD RD +
Sbjct: 7 IWRPPSLENFKPKFRI----YANGVAQVRIYC-FGTVSSSRLYNAHNLFDKSPGRDRESY 61
Query: 229 KVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDL-GKRHEEQVQAYAIK 287
+L ++ +G +E LF+++HR G+ D VL V + L + Q+ IK
Sbjct: 62 ISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIK 121
Query: 288 LLLYNNNS----------------------------NVVLWNKKLSGYLQVGDNHGAIEC 319
++ S NVV W +SGY + N +
Sbjct: 122 FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTL 181
Query: 320 FVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379
F+ M Q +S TF AL +A G Q+H +K+G + V NSLIN+Y K
Sbjct: 182 FMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLK 241
Query: 380 MGCV---------------------------CGL----------------RTDQFTLASV 396
G V GL R + + ASV
Sbjct: 242 CGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASV 301
Query: 397 LRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF- 455
++ ++L E L ++Q+H +K + D + TAL+ Y + +M +A LF+
Sbjct: 302 IKLCANLKE-LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVG 360
Query: 456 DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMH 515
++ +W AMI G++ ++ +A++LFS M G R +E T + + A L + ++H
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVH 416
Query: 516 AYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEED 575
A +K+ +E V + +LD YVK G + +A +F+ I D VAW+ M++G GE +
Sbjct: 417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETE 476
Query: 576 LALSIYHQMRLSGVVPDEFTFAILVKASSCLTA-LEQGRQIHANLIKLDCSSDPFVGISL 634
A+ ++ ++ G+ P+EFTF+ ++ + A + QG+Q H IK S V +L
Sbjct: 477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSAL 536
Query: 635 VDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS 694
+ MYAK GNIE A +FK+ ++ V WN+M+ G AQHG + L +F++MK V+ D
Sbjct: 537 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596
Query: 695 VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELIL 754
VTFIGV +AC++ GLV E + F +M I P EH S +VD RAG+ ++A ++I
Sbjct: 597 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIE 656
Query: 755 SMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDD 814
+MP A +++ R +L ACRV TE G+ AEK++A++P DS+AYVLLSN++A + W +
Sbjct: 657 NMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQE 716
Query: 815 VTSARGEMKRKNVKKDPA-----------------------DLIFAKVEGLIKRIKEGGY 851
R M +NVKK+P D I+ K+E L R+K+ GY
Sbjct: 717 RAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGY 776
Query: 852 VPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPPSSVIL----------------- 894
PDT +VL D+++E KE L HSE+LA A+GLI+TP S +L
Sbjct: 777 EPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKL 836
Query: 895 ----SNKEPLY--ANRFHHL-RDGMCPCAD 917
+E + +NRFHH DG+C C D
Sbjct: 837 IAKIEEREIVVRDSNRFHHFSSDGVCSCGD 866
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 245/786 (31%), Positives = 379/786 (48%), Gaps = 117/786 (14%)
Query: 179 ETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAEN 238
+ +HG ++ + F+ +V+ Y+ A+ +FD + + ++ W +L AY++
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 239 GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVV 298
G E+ F L PD + V
Sbjct: 86 GLISEMESTFEKL------PDRDGVT---------------------------------- 105
Query: 299 LWNKKLSGYLQVGDNHGAIECFVNMIRS-NVQYDSVTFLVALAAVAGTDNLNLGQQIHGT 357
WN + GY G A++ + M+R + VT + L + +++LG+QIHG
Sbjct: 106 -WNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQ 164
Query: 358 TLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHA 417
+K GF S ++VG+ L+ MY+ +GC+ + + L
Sbjct: 165 VIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDD---------------------- 202
Query: 418 IKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKAL 477
+N + +S + L C G + +A LF + D +W AMI G + + +A+
Sbjct: 203 -RNTVMYNSLMGGLLA---C--GMIEDALQLFRGMEK-DSVSWAAMIKGLAQNGLAKEAI 255
Query: 478 ELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMY 537
E F M G ++D+ + + ACG L + +GKQ+HA +++ F+ + V S ++DMY
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315
Query: 538 VKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFA 597
KC + A+++F+ + + V+WT M+ G G + A+ I+ M+ SG+ PD +T
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375
Query: 598 ILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR 657
+ A + +++LE+G Q H I V SLV +Y KCG+I+D+ LF +M++R
Sbjct: 376 QAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435
Query: 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENF 717
+ V W AM+ AQ G ET++LF+ M HG++PD VT GV+SACS GLV + F
Sbjct: 436 DAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495
Query: 718 HLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGD 777
LM +YGI P + HYS ++D R+GR +EA I MPF A LL ACR +G+
Sbjct: 496 KLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555
Query: 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA----- 832
E GKW AE L+ L+P + Y LLS+I+A+ +WD V R M+ KNVKK+P
Sbjct: 556 LEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIK 615
Query: 833 ------------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYH 874
D I+AK+E L +I + GY PDT FV DVEE K + L YH
Sbjct: 616 WKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYH 675
Query: 875 SEKLARAYGLISTPPSSVI---------------------LSNKEPLY--ANRFHHLRDG 911
SE+LA A+GLI P I ++ +E L A RFH +DG
Sbjct: 676 SERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDG 735
Query: 912 MCPCAD 917
C C D
Sbjct: 736 TCSCGD 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 267/857 (31%), Positives = 418/857 (48%), Gaps = 120/857 (14%)
Query: 181 VHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQE-RDVVLWKVMLRAYAENG 239
+H + +GL +F SG L++ YS F + + +F + ++V LW ++RA+++NG
Sbjct: 26 IHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNG 85
Query: 240 FGEEVFHLFVDLHRSGLCPDDESVQCVLGVIS-----DLGKRHEEQVQAYAIKLLLYNNN 294
E + L S + PD + V+ + ++G EQ+ + L+ N
Sbjct: 86 LFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGN 145
Query: 295 S------------------------NVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQY 330
+ ++V WN +SGY G A+E + + S +
Sbjct: 146 ALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205
Query: 331 DSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKM---------- 380
DS T L A + GQ +HG LKSG S V+V N L+ MY K
Sbjct: 206 DSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVF 265
Query: 381 ------------GCVCG--------------------LRTDQFTLASVLRASSSLPEGLH 408
+CG + D T++SVLRA L + L
Sbjct: 266 DEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRD-LS 324
Query: 409 LSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYI 468
L+K I+ + +K V +S V LIDVY + G M A +F + + D +WN++I GYI
Sbjct: 325 LAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYI 384
Query: 469 LSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLC 528
S + +A++LF M E+ D IT + L LK GK +H+ +KSG +DL
Sbjct: 385 QSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLS 444
Query: 529 VSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSG 588
VS+ ++DMY KCG + D+ IF+ + D V W T+IS CV G+ L + QMR S
Sbjct: 445 VSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSE 504
Query: 589 VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAY 648
VVPD TF + + + L A G++IH L++ S+ +G +L++MY+KCG +E++
Sbjct: 505 VVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSS 564
Query: 649 ILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTG 708
+F++M R+ V W M+ +G GE+ L+ F DM+ G+ PDSV FI ++ ACS++G
Sbjct: 565 RVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSG 624
Query: 709 LVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRAL 768
LV E F M+ Y I+P +EHY+ +VD L R+ + +A E I +MP + AS+ ++
Sbjct: 625 LVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASV 684
Query: 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828
L ACR GD ET + V+ +++ L P D +L SN +AA +WD V+ R +K K++
Sbjct: 685 LRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHIT 744
Query: 829 KDP-----------------------ADLIFAKVEGLIKRIKEGGYVPDTDFVLLDV-EE 864
K+P ++ I+ +E L + + GY+PD V ++ EE
Sbjct: 745 KNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEE 804
Query: 865 EEKERALYYHSEKLARAYGLISTPPSSVI---------------------LSNKEPLY-- 901
EEK R + HSE+LA A+GL++T P + + + +E L
Sbjct: 805 EEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRD 864
Query: 902 ANRFHHLRDGMCPCADN 918
ANRFH +DG C C D
Sbjct: 865 ANRFHLFKDGTCSCKDR 881
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 255/855 (29%), Positives = 407/855 (47%), Gaps = 129/855 (15%)
Query: 59 ILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRD 118
+L +++ G+ H ++ + + L+ MY++C + ARR+F+ + D +
Sbjct: 166 VLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPN 225
Query: 119 LISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWAS 178
+ W + + Y +G E +F +R+
Sbjct: 226 TVCWTCLFSGYVKAGLPE-----EAVLVFERMRDE------------------------- 255
Query: 179 ETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAEN 238
G D ++N Y + GK+++A+ LF M DVV W VM+ + +
Sbjct: 256 ----------GHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKR 305
Query: 239 GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVIS-----DLGKRHEEQVQAYAIKLLLYNN 293
G F ++ +S + ++ VL I DLG V A AIKL L +N
Sbjct: 306 GCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGL----VVHAEAIKLGLASN 361
Query: 294 ----------------------------NSNVVLWNKKLSGYLQVGDNHGAIECFVNMIR 325
N V WN + GY G++H +E F++M
Sbjct: 362 IYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKS 421
Query: 326 SNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCV-- 383
S D TF L+ A + +L +G Q H +K + VGN+L++MY+K G +
Sbjct: 422 SGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALED 481
Query: 384 -----------------------------------------CGLRTDQFTLASVLRASSS 402
CG+ +D LAS L+A +
Sbjct: 482 ARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTH 541
Query: 403 LPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNA 462
+ GL+ KQ+H ++K D ++LID+Y + G + +A +F + + + + NA
Sbjct: 542 V-HGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNA 600
Query: 463 MIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSG 522
+I GY NN +A+ LF M T G EIT AT V+AC L G Q H K G
Sbjct: 601 LIAGYS-QNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRG 659
Query: 523 FELD---LCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVA-WTTMISGCVDNGEEDLAL 578
F + L +S +L MY+ M +A ++F+++ +P + WT M+SG NG + AL
Sbjct: 660 FSSEGEYLGIS--LLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEAL 717
Query: 579 SIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMY 638
Y +MR GV+PD+ TF +++ S L++L +GR IH+ + L D +L+DMY
Sbjct: 718 KFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMY 777
Query: 639 AKCGNIEDAYILFKQMDMR-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTF 697
AKCG+++ + +F +M R N V WN+++ G A++G E+ LK+F+ M+ + PD +TF
Sbjct: 778 AKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITF 837
Query: 698 IGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP 757
+GVL+ACS+ G VS+ + F +M +YGIE V+H + +VD LGR G +EA + I +
Sbjct: 838 LGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQN 897
Query: 758 FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTS 817
+ A + +LLGACR+ GD G+ AEKL+ LEP +SSAYVLLSNI+A+ W+ +
Sbjct: 898 LKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANA 957
Query: 818 ARGEMKRKNVKKDPA 832
R M+ + VKK P
Sbjct: 958 LRKVMRDRGVKKVPG 972
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/771 (32%), Positives = 385/771 (49%), Gaps = 79/771 (10%)
Query: 197 SGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGL 256
+ +++ + K G + A+ LFD M +R VV W +++ YA N +E F LF + RS
Sbjct: 82 TNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSS 141
Query: 257 C--PDDESVQCVLGVISD-LGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDN 313
C PD + +L +D + + QV A+A+KL ++ N + + N L Y +V
Sbjct: 142 CTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLG-FDTNPFLTVSNVLLKSYCEVRRL 200
Query: 314 HGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSL 373
A F + + DSVTF + L G + K G Y+ I
Sbjct: 201 DLACVLFEEI----PEKDSVTF----------NTLITGYE------KDGLYTESI----- 235
Query: 374 INMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALI 433
+++ KM G + FT + VL+A L + L +Q+H ++ D+ V ++
Sbjct: 236 -HLFLKMR-QSGHQPSDFTFSGVLKAVVGLHD-FALGQQLHALSVTTGFSRDASVGNQIL 292
Query: 434 DVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI 493
D Y ++ + E LF+ D ++N +I Y ++ +L F M G
Sbjct: 293 DFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNF 352
Query: 494 TIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDI 553
AT + L L+ G+Q+H A+ + + L V + ++DMY KC +A+ IF +
Sbjct: 353 PFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSL 412
Query: 554 PAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613
P V+WT +ISG V G L ++ +MR S + D+ TFA ++KAS+ +L G+
Sbjct: 413 PQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGK 472
Query: 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHG 673
Q+HA +I+ + F G LVDMYAKCG+I+DA +F++M RN V WNA++ A +G
Sbjct: 473 QLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNG 532
Query: 674 NGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHY 733
+GE + F M G++PDSV+ +GVL+ACS+ G V + E F M YGI P+ +HY
Sbjct: 533 DGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHY 592
Query: 734 SFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEP 793
+ ++D LGR GR EA +L+ MPFE M ++L ACR+ + + AEKL ++E
Sbjct: 593 ACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEK 652
Query: 794 F-DSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-------------------- 832
D++AYV +SNI+AAA +W+ V + M+ + +KK PA
Sbjct: 653 LRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTH 712
Query: 833 ---DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPP 889
D I K+ L I+ GY PDT V+ DV+E+ K +L YHSE+LA A+ LISTP
Sbjct: 713 PNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPE 772
Query: 890 SS--VILSNKEPLY---------------------ANRFHHLRDGMCPCAD 917
V++ N +RFHH +G+C C D
Sbjct: 773 GCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGD 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 257/834 (30%), Positives = 407/834 (48%), Gaps = 140/834 (16%)
Query: 221 QERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRH-EE 279
Q R W +LR+ + E +VD+ G+ PD+ + +L ++DL +
Sbjct: 58 QSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGK 117
Query: 280 QVQAYAIK--------------LLLYN---------------NNSNVVLWNKKLSGYLQV 310
Q+ A+ K + LY + N V WN +S
Sbjct: 118 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 177
Query: 311 GDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAG---TDNLNLGQQIHGTTLKSGFYSAV 367
A+E F M+ NV+ S T + + A + + L +G+Q+H L+ G ++
Sbjct: 178 EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF 237
Query: 368 IVGNSLINMYSKMG-------------------------CVC------------------ 384
I+ N+L+ MY K+G +C
Sbjct: 238 II-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296
Query: 385 GLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTV-ADSFVSTALIDVYCRNGSMA 443
G+ D+FT++SVL A S L E L K++H +A+KN ++ +SFV +AL+D+YC +
Sbjct: 297 GVEPDEFTISSVLPACSHL-EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355
Query: 444 EAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERL-DEITIATAVKAC 502
+F+ + WNAMI GY + + +AL LF M S L + T+A V AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 503 GCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWT 562
+ + +H + +K G + D V + ++DMY + G + A IF + D V W
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 475
Query: 563 TMISGCVDNGEEDLALSIYHQM------------RLSGVVPDEFTFAILVKASSCLTALE 610
TMI+G V + + AL + H+M R+S + P+ T ++ + + L+AL
Sbjct: 476 TMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS-LKPNSITLMTILPSCAALSALA 534
Query: 611 QGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLA 670
+G++IHA IK + ++D VG +LVDMYAKCG ++ + +F Q+ +N + WN +++
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Query: 671 QHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV 730
HGNG+E + L M GV+P+ VTFI V +ACS++G+V E F++M+ YG+EP
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSS 654
Query: 731 EHYSFLVDALGRAGRTKEAGELILSMPFE-ASASMHRALLGACRVQGDTETGKWVAEKLM 789
+HY+ +VD LGRAGR KEA +L+ MP + A +LLGA R+ + E G+ A+ L+
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714
Query: 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP------------------ 831
LEP +S YVLL+NI+++A WD T R MK + V+K+P
Sbjct: 715 QLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGD 774
Query: 832 -----ADLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLIS 886
++ + +E L +R+++ GYVPDT VL +VEE+EKE L HSEKLA A+G+++
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILN 834
Query: 887 TPPSSVILSNKEPLYAN-----------------------RFHHLRDGMCPCAD 917
T P ++I K N RFH ++G C C D
Sbjct: 835 TSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 919 | ||||||
| 359475985 | 1580 | PREDICTED: pentatricopeptide repeat-cont | 0.934 | 0.543 | 0.611 | 0.0 | |
| 15234095 | 990 | pentatricopeptide repeat-containing prot | 0.926 | 0.859 | 0.561 | 0.0 | |
| 357465899 | 973 | Pentatricopeptide repeat-containing prot | 0.952 | 0.899 | 0.556 | 0.0 | |
| 449486805 | 1573 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.932 | 0.544 | 0.572 | 0.0 | |
| 449447363 | 1573 | PREDICTED: pentatricopeptide repeat-cont | 0.932 | 0.544 | 0.572 | 0.0 | |
| 297798624 | 997 | pentatricopeptide repeat-containing prot | 0.929 | 0.856 | 0.557 | 0.0 | |
| 356518183 | 1582 | PREDICTED: pentatricopeptide repeat-cont | 0.944 | 0.548 | 0.555 | 0.0 | |
| 356509847 | 1611 | PREDICTED: pentatricopeptide repeat-cont | 0.948 | 0.541 | 0.553 | 0.0 | |
| 255550217 | 1439 | pentatricopeptide repeat-containing prot | 0.770 | 0.492 | 0.590 | 0.0 | |
| 296081733 | 865 | unnamed protein product [Vitis vinifera] | 0.781 | 0.830 | 0.488 | 0.0 |
| >gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/952 (61%), Positives = 701/952 (73%), Gaps = 93/952 (9%)
Query: 59 ILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRD 118
+LR AIST +LLLGK THARI+ S D FL+NNL+TMYS+CGSL AR++FD P+RD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686
Query: 119 LISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWAS 178
L++WN+IL AYA S + N N EG LFR LR S+ T+R+TLAP+LKLCL+SG +WA+
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746
Query: 179 ETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAEN 238
E VHGYA+KIGL WD FVSGALVNIYSK G++R+A+ LFD M+ERDVVLW +ML+ Y +
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806
Query: 239 GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVIS----DLGKRHEEQVQAYAIKLLLYNNN 294
G +E F LF + HRSGL PD+ SVQ +L +S D GK +QVQAYA KL L ++N
Sbjct: 807 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDN 866
Query: 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQI 354
+V WNKKLS L GDN GAIECFVNM N+ YD+VT LV LAAVAGTD+L LG+Q+
Sbjct: 867 PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926
Query: 355 HGTTLKSGFYSAVIVGNSLINMYSKMGCV------------------------C------ 384
HG +KSG S V V NSL+NMYSKMGC C
Sbjct: 927 HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLE 986
Query: 385 -------------GLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTA 431
GL+ D FTLASVLRA SSL +GL++S+QIHVHA+K +ADSFV+T
Sbjct: 987 EESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATT 1046
Query: 432 LIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD 491
LIDVY ++G M EAE+LF+NKD DLA WNAM+FGYI+ N+ KALELFS +H SGE+ D
Sbjct: 1047 LIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSD 1106
Query: 492 EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFN 551
+IT+ATA KACGCL++L QGKQ+HA+A+K+GF+ DL V+SGILDMY+KCG MV+A +FN
Sbjct: 1107 QITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN 1166
Query: 552 DIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQ 611
I APDDVAWT+MISGCVDNG ED AL IYH+MR S V+PDE+TFA L+KASSC+TALEQ
Sbjct: 1167 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ 1226
Query: 612 GRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQ 671
GRQ+HAN+IKLDC SDPFVG SLVDMYAKCGNIEDAY LFK+M++RN LWNAMLVGLAQ
Sbjct: 1227 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 1286
Query: 672 HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVE 731
HGN EE + LF+ MK+HG+EPD V+FIG+LSACS+ GL SEAYE H M YGIEPE+E
Sbjct: 1287 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 1346
Query: 732 HYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791
HYS LVDALGRAG +EA ++I +MPF+ASAS++RALLGACR+QGD ETGK VA +L AL
Sbjct: 1347 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFAL 1406
Query: 792 EPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP-------------------- 831
EPFDS+AYVLLSNI+AAAN+WDDVT AR MKRKNVKKDP
Sbjct: 1407 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRS 1466
Query: 832 ---ADLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTP 888
AD+I+ KVE ++K I+E GYVPDT+FVLLDVE+EEKER+LYYHSEKLA AYGLISTP
Sbjct: 1467 HPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTP 1526
Query: 889 PSSVI---------------------LSNKEPLY--ANRFHHLRDGMCPCAD 917
S+ I + +E + ANRFHH RDG+C C D
Sbjct: 1527 ASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGD 1578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana] gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana] gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/960 (56%), Positives = 663/960 (69%), Gaps = 109/960 (11%)
Query: 55 QWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKM 114
QWF LR+AI++SDL+LGK THARIL + P+RFL NNL++MYS+CGSL YARR+FDKM
Sbjct: 41 QWFGFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKM 100
Query: 115 PDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGY 174
PDRDL+SWNSILAAYA S E EN+ + F LFR LR+ + +TSR+TL+P+LKLCL SGY
Sbjct: 101 PDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 160
Query: 175 VWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRA 234
VWASE+ HGYA KIGL DEFV+GALVNIY KFGK++E K LF+ M RDVVLW +ML+A
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA 220
Query: 235 YAENGFGEEVFHLFVDLHRSGLCPDDESVQC---VLGVISDLGKRHEEQVQAYAIKLLLY 291
Y E GF EE L H SGL P++ +++ + G SD G QV+++A
Sbjct: 221 YLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAG-----QVKSFA------ 269
Query: 292 NNN-----SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTD 346
N N S ++ NK LS YL G ++CF +M+ S+V+ D VTF++ LA D
Sbjct: 270 NGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVD 329
Query: 347 NLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMG------------------------- 381
+L LGQQ+H LK G + V NSLINMY K+
Sbjct: 330 SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIA 389
Query: 382 ------------CV------CGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTV 423
C+ CGL+ DQ+T+ SVL+A+SSLPEGL LSKQ+HVHAIK + V
Sbjct: 390 GIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNV 449
Query: 424 ADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHM 483
+DSFVSTALID Y RN M EAE LFE + FDL WNAM+ GY S++ HK L+LF+ M
Sbjct: 450 SDSFVSTALIDAYSRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALM 508
Query: 484 HTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAM 543
H GER D+ T+AT K CG L + QGKQ+HAYA+KSG++LDL VSSGILDMYVKCG M
Sbjct: 509 HKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 568
Query: 544 VDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKAS 603
AQ F+ IP PDDVAWTTMISGC++NGEE+ A ++ QMRL GV+PDEFT A L KAS
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628
Query: 604 SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWN 663
SCLTALEQGRQIHAN +KL+C++DPFVG SLVDMYAKCG+I+DAY LFK+++M N WN
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688
Query: 664 AMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREK 723
AMLVGLAQHG G+ETL+LF+ MK+ G++PD VTFIGVLSACS++GLVSEAY++ M
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 724 YGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKW 783
YGI+PE+EHYS L DALGRAG K+A LI SM EASASM+R LL ACRVQGDTETGK
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 784 VAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA----------- 832
VA KL+ LEP DSSAYVLLSN++AAA++WD++ AR MK VKKDP
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Query: 833 ------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLAR 880
+LI+ KV+ +I+ IK+ GYVP+TDF L+DVEEEEKERALYYHSEKLA
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928
Query: 881 AYGLISTPPSSVI---------------------LSNKEPLY--ANRFHHLRDGMCPCAD 917
A+GL+STPPS+ I + N+E + ANRFH +DG+C C D
Sbjct: 929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/969 (55%), Positives = 672/969 (69%), Gaps = 94/969 (9%)
Query: 43 QKSHFSSSSSSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCG 102
+K S SS QWFSILRHAI+ SDL+LGK THA I+ S PDR++TNNL+TMY++CG
Sbjct: 3 RKCSVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCG 62
Query: 103 SLVYARRLFDKMP--DRDLISWNSILAAYAHSGE-GNAENVTEGFRLFRSLRESITFTSR 159
SL AR+LFD P DRDL+++N+ILAAYAH+GE + E E F +FR LR+S+ T+R
Sbjct: 63 SLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTR 122
Query: 160 LTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDG 219
TL+PL KLCL G ASE + GYA+KIGL WD FV+GALVNIY+KF +IREA+ LFD
Sbjct: 123 HTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDR 182
Query: 220 MQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISD--LGKRH 277
M RDVVLW VM++AY E G G+EV LF HRSGL PD SV+ +L + + +R
Sbjct: 183 MPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERE 242
Query: 278 EEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLV 337
EQV+AYA KL + +++S+V +WNK LS YLQ G+ A++CF +MI+S V DS+T++V
Sbjct: 243 LEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIV 302
Query: 338 ALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCV-------------- 383
L+ VA ++L LG+QIHG ++ G+ V V NS INMY K G V
Sbjct: 303 ILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVD 362
Query: 384 ------------------CGLR-----------TDQFTLASVLRASSSLPEGLHLSKQIH 414
C LR DQFT+ SVLRA SSL E + +Q+H
Sbjct: 363 LISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVH 422
Query: 415 VHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSH 474
A+K V DSFVSTALIDVY + G M EAE LF N+DGFDLA+WNAM+ G+ +S+N
Sbjct: 423 TCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYR 482
Query: 475 KALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGIL 534
+AL LFS MH GE+ D+IT A A KA GCL+ L+QGKQ+HA +K F DL V SGIL
Sbjct: 483 EALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGIL 542
Query: 535 DMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594
DMY+KCG M A+ +FN IP+PDDVAWTT+ISGCV+NGEE+ AL YHQMRL+GV PDE+
Sbjct: 543 DMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEY 602
Query: 595 TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM 654
TFA LVKA S LTALEQG+QIHAN++KL+C+ DPFV SLVDMYAKCGNIEDAY LF++M
Sbjct: 603 TFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRM 662
Query: 655 DMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAY 714
+ R+ LWNAM+VGLAQHGN EE L F +MK+ GV PD VTFIGVLSACS++GL S+AY
Sbjct: 663 NTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAY 722
Query: 715 ENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRV 774
+NF M++ YG+EPE+EHYS LVDAL RAG +EA +++ SMPFEASA+M+R LL ACRV
Sbjct: 723 KNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRV 782
Query: 775 QGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-- 832
QGD ETG+ VAEKL ++P DS+AYVLLSNI+AAANQW++ SAR MKR NVKK+P
Sbjct: 783 QGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFS 842
Query: 833 ---------------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERAL 871
DLI+ KVE ++KRIKE GYVPDT+F L+D+EEE+KE AL
Sbjct: 843 WIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESAL 902
Query: 872 YYHSEKLARAYGLISTPPSSVI------------------LSN---KEPLY--ANRFHHL 908
YHSEKLA AYGL+ TPPS+ + +SN +E + ANRFHH
Sbjct: 903 SYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHF 962
Query: 909 RDGMCPCAD 917
R G+C C D
Sbjct: 963 RSGICSCGD 971
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/953 (57%), Positives = 667/953 (69%), Gaps = 96/953 (10%)
Query: 61 RHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLI 120
R AI+ +DL LGK HARI+ S +PDR+LTNNL+TMYS+CGSL AR++FDK DRDL+
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678
Query: 121 SWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASET 180
+WNSILAAYA + + ENV EGFRLF LRE +RLTLAPLLKLCL SG+V SET
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738
Query: 181 VHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGF 240
VHGYA+KIG D FVSGALVNIY K+G + +A+ LFD M ERD VLW VML+AY EN F
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798
Query: 241 GEEVFHLFVDLHRSGLCPDDESVQCVLG-VISDLG---KRHEEQVQAYAIKLLLYNNNSN 296
+E F HRSG PD ++ CV+G V SD+ KRH EQV+AYA+K+ ++ SN
Sbjct: 799 QDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN 858
Query: 297 VVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHG 356
+ WNKKL+ +L G AI+CF ++RS + +DSVT ++ L+A G D+L+LG+QIH
Sbjct: 859 IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA 918
Query: 357 TTLKSGFYSAVIVGNSLINMYSKMGCV--------------------------------- 383
+KS F V V NSL+NMYSK G V
Sbjct: 919 LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEME 978
Query: 384 --C--------GLRTDQFTLASVLRASSSLPEGLH--LSKQIHVHAIKNDTVADSFVSTA 431
C GL+ DQFTLASVLRA S+ EG + L Q+HV+AIK + DSFVSTA
Sbjct: 979 AICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTA 1038
Query: 432 LIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD 491
LID+Y + G M EAE+L K FDLA+WNA++FGYI SN S KALE FS MH G +D
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPID 1098
Query: 492 EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFN 551
EIT+ATA+KA GCL+ LKQGKQ+ AYA+K GF DL VSSG+LDMY+KCG M +A +F
Sbjct: 1099 EITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG 1158
Query: 552 DIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQ 611
+I PD+VAWTTMISG ++NG+ED ALS+YH MR+SGV PDE+TFA L+KASSCLTALEQ
Sbjct: 1159 EISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQ 1218
Query: 612 GRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQ 671
G+QIHAN++KLD S D FVG SLVDMY KCG+++DAY +F++MD+R V WNAML+GLAQ
Sbjct: 1219 GKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQ 1278
Query: 672 HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVE 731
HG+ +E L LF M+++G++PD VTFIGVLSACS++GL SEAY+ F M + YGI PE+E
Sbjct: 1279 HGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIE 1338
Query: 732 HYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791
HYS LVDALGRAGR +EA +I SMPF+ASASM+RALLGACR +GD ET K VA+KL+AL
Sbjct: 1339 HYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLAL 1398
Query: 792 EPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP-------------------- 831
+P DSSAYVLLSNI+AA+ QWDDVT AR MK KNVKKDP
Sbjct: 1399 DPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRS 1458
Query: 832 ---ADLIFAKVEGLIKRIK-EGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLIST 887
A LI+ K+E L+KRI+ EG YVPDTDF LLDVEEEEKERALYYHSEKLA A+GLIST
Sbjct: 1459 HPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLIST 1518
Query: 888 PPSSVI---------------------LSNKEPLY--ANRFHHLRDGMCPCAD 917
PPS+ I L+ +E + ANRFHH R+G C C D
Sbjct: 1519 PPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGD 1571
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/953 (57%), Positives = 667/953 (69%), Gaps = 96/953 (10%)
Query: 61 RHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLI 120
R AI+ +DL LGK HARI+ S +PDR+LTNNL+TMYS+CGSL AR++FDK DRDL+
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678
Query: 121 SWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASET 180
+WNSILAAYA + + ENV EGFRLF LRE +RLTLAPLLKLCL SG+V SET
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738
Query: 181 VHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGF 240
VHGYA+KIG D FVSGALVNIY K+G + +A+ LFD M ERD VLW VML+AY EN F
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798
Query: 241 GEEVFHLFVDLHRSGLCPDDESVQCVLG-VISDLG---KRHEEQVQAYAIKLLLYNNNSN 296
+E F HRSG PD ++ CV+G V SD+ KRH EQV+AYA+K+ ++ SN
Sbjct: 799 QDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN 858
Query: 297 VVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHG 356
+ WNKKL+ +L G AI+CF ++RS + +DSVT ++ L+A G D+L+LG+QIH
Sbjct: 859 IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHA 918
Query: 357 TTLKSGFYSAVIVGNSLINMYSKMGCV--------------------------------- 383
+KS F V V NSL+NMYSK G V
Sbjct: 919 LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEME 978
Query: 384 --C--------GLRTDQFTLASVLRASSSLPEGLH--LSKQIHVHAIKNDTVADSFVSTA 431
C GL+ DQFTLASVLRA S+ EG + L Q+HV+AIK + DSFVSTA
Sbjct: 979 AICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTA 1038
Query: 432 LIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD 491
LID+Y + G M EAE+L K FDLA+WNA++FGYI SN S KALE FS MH G +D
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPID 1098
Query: 492 EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFN 551
EIT+ATA+KA GCL+ LKQGKQ+ AYA+K GF DL VSSG+LDMY+KCG M +A +F
Sbjct: 1099 EITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG 1158
Query: 552 DIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQ 611
+I PD+VAWTTMISG ++NG+ED ALS+YH MR+SGV PDE+TFA L+KASSCLTALEQ
Sbjct: 1159 EISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQ 1218
Query: 612 GRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQ 671
G+QIHAN++KLD S D FVG SLVDMY KCG+++DAY +F++MD+R V WNAML+GLAQ
Sbjct: 1219 GKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQ 1278
Query: 672 HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVE 731
HG+ +E L LF M+++G++PD VTFIGVLSACS++GL SEAY+ F M + YGI PE+E
Sbjct: 1279 HGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIE 1338
Query: 732 HYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791
HYS LVDALGRAGR +EA +I SMPF+ASASM+RALLGACR +GD ET K VA+KL+AL
Sbjct: 1339 HYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLAL 1398
Query: 792 EPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP-------------------- 831
+P DSSAYVLLSNI+AA+ QWDDVT AR MK KNVKKDP
Sbjct: 1399 DPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRS 1458
Query: 832 ---ADLIFAKVEGLIKRIK-EGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLIST 887
A LI+ K+E L+KRI+ EG YVPDTDF LLDVEEEEKERALYYHSEKLA A+GLIST
Sbjct: 1459 HPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLIST 1518
Query: 888 PPSSVI---------------------LSNKEPLY--ANRFHHLRDGMCPCAD 917
PPS+ I L+ +E + ANRFHH R+G C C D
Sbjct: 1519 PPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGD 1571
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/957 (55%), Positives = 658/957 (68%), Gaps = 103/957 (10%)
Query: 55 QWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKM 114
Q F LR AISTSDL+LGK THARIL + P+RFL NNL++MYS+CGSL YARR+FDKM
Sbjct: 48 QCFGFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKM 107
Query: 115 PDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGY 174
P+RDL+SWNSILAAYA S EG ENV E F LFR LR+ + +TSR+TL+P+LKLCL SGY
Sbjct: 108 PERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 167
Query: 175 VWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRA 234
V ASE+ HGYA KIGL D+FV+GALVNIY KFGK++E + LF+ M RDVVLW +ML+A
Sbjct: 168 VCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKA 227
Query: 235 YAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNN 294
Y E GF EE L H SGL P++ +++ + + D QV+++ N N
Sbjct: 228 YLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGD--DSEAGQVKSFE------NGN 279
Query: 295 -----SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLN 349
S ++ NK LSGYL G ++CF++M+ S+++ D VTF++ LA D+L
Sbjct: 280 DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLA 339
Query: 350 LGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCV-------------------------- 383
LGQQ+H LK G + V NSLINMY K+ +
Sbjct: 340 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIA 399
Query: 384 -----------------CGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADS 426
CGL+ D +T+ SVL+A+SSLPEGL LSKQIHVHAIK + VADS
Sbjct: 400 QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADS 459
Query: 427 FVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTS 486
FVSTALID Y RN M EAE LF ++ FDL WNAM+ GY S++ HK LELF+ MH
Sbjct: 460 FVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQ 518
Query: 487 GERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDA 546
GER D+ T+AT +K CG L + QGKQ+HAYA+KSG++LDL VSSGILDMYVKCG M A
Sbjct: 519 GERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAA 578
Query: 547 QSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCL 606
Q F+ IP PDDVAWTT+ISGC++NGEE+ AL ++ QMRL GV+PDEFT A L KASSCL
Sbjct: 579 QFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCL 638
Query: 607 TALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAML 666
TALEQGRQIHAN +KL+C+SDPFVG SLVDMYAKCG+I+DAY LFK+++M N WNAML
Sbjct: 639 TALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAML 698
Query: 667 VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGI 726
VGLAQHG G+E L+LF+ M++ G++PD VTFIGVLSACS++GLVSEAY+ M YGI
Sbjct: 699 VGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGI 758
Query: 727 EPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAE 786
+PE+EHYS L DALGRAG KEA LI SM EASASM+R LL ACRVQGDTETGK VA
Sbjct: 759 KPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVAT 818
Query: 787 KLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-------------- 832
KL+ LEP DSSAYVLLSN++AAA++WD++ AR MK VKKDP
Sbjct: 819 KLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFV 878
Query: 833 ---------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYG 883
+LI+ KV+ +I+ IK+ GYVP+TDF L+DVEEEEKERALYYHSEKLA A+G
Sbjct: 879 VDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFG 938
Query: 884 LISTPPSSVI---------------------LSNKEPLY--ANRFHHLRDGMCPCAD 917
L+STPPS+ I + ++E + ANRFH +DG+C C D
Sbjct: 939 LLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGD 995
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/976 (55%), Positives = 668/976 (68%), Gaps = 108/976 (11%)
Query: 40 PFLQKSHFSSSSSSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYS 99
PF+ +H S QWFSILRHAI+ SDL LGK HARIL S PDRFLTNNL+TMYS
Sbjct: 615 PFIPPAHLIHSIP--QWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYS 672
Query: 100 RCGSLVYARRLFDKMPD--RDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFT 157
+CGSL AR+LFD PD RDL++WN+IL+A+A + +GF LFR LR S
Sbjct: 673 KCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA-------DKARDGFHLFRLLRRSFVSA 725
Query: 158 SRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLF 217
+R TLAP+ K+CL S A+E++HGYA+KIGL WD FV+GALVNIY+KFG+IREA+ LF
Sbjct: 726 TRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLF 785
Query: 218 DGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVI----SDL 273
DGM RDVVLW VM++AY + G E LF + +R+GL PDD ++ C L + ++
Sbjct: 786 DGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL-CTLARVVKSKQNV 844
Query: 274 GKRHEEQVQAYAIKLLLYNN---NSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQY 330
+ +Q++AY KL +Y++ S+V+ WNK LS +LQ G+ A++CFV+MI S V
Sbjct: 845 LEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVAC 904
Query: 331 DSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRT-- 388
D +TF+V L+ VAG + L LG+QIHG ++SG V VGN LINMY K G V RT
Sbjct: 905 DGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVF 964
Query: 389 -----------------------------------------DQFTLASVLRASSSLPEGL 407
DQFT+ASVLRA SSL G
Sbjct: 965 WQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGC 1024
Query: 408 HLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGY 467
HL+ QIH A+K V DSFVST LIDVY ++G M EAE+LF N+DGFDLA+WNAM+ GY
Sbjct: 1025 HLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGY 1084
Query: 468 ILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDL 527
I+S + KAL L+ M SGER ++IT+A A KA G L+ LKQGKQ+ A +K GF LDL
Sbjct: 1085 IVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDL 1144
Query: 528 CVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLS 587
V SG+LDMY+KCG M A+ IFN+IP+PDDVAWTTMISGCV+NG+E+ AL YH MRLS
Sbjct: 1145 FVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLS 1204
Query: 588 GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA 647
V PDE+TFA LVKA S LTALEQGRQIHAN +KL+C+ DPFV SLVDMYAKCGNIEDA
Sbjct: 1205 KVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDA 1264
Query: 648 YILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYT 707
LFK+ + WNAM+VGLAQHGN EE L+ FE+MK+ GV PD VTFIGVLSACS++
Sbjct: 1265 RGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHS 1324
Query: 708 GLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRA 767
GLVSEAYENF+ M++ YGIEPE+EHYS LVDAL RAGR +EA ++I SMPFEASASM+R
Sbjct: 1325 GLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRT 1384
Query: 768 LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827
LL ACRVQ D ETGK VAEKL+ALEP DS+AYVLLSN++AAANQW++V SAR M++ NV
Sbjct: 1385 LLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANV 1444
Query: 828 KKDPA-----------------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEE 864
KKDP D+I+ KVE ++KRI+E GY+PDTDF L+DVEE
Sbjct: 1445 KKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEE 1504
Query: 865 EEKERALYYHSEKLARAYGLISTPPSSV--ILSN-------------------KEPLY-- 901
E+KE +LYYHSEKLA AYGL+ TPPS+ ++ N +E +
Sbjct: 1505 EDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRD 1564
Query: 902 ANRFHHLRDGMCPCAD 917
ANRFHH R G+C C D
Sbjct: 1565 ANRFHHFRSGVCSCGD 1580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/971 (55%), Positives = 668/971 (68%), Gaps = 99/971 (10%)
Query: 40 PFLQKSHFSSSSSSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYS 99
P ++H S Q FSILR AI+ SDL LGK HARIL S PDRF+TNNL+TMY+
Sbjct: 645 PLTPRAHLIHSLP--QCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYA 702
Query: 100 RCGSLVYARRLFDKMPD--RDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFT 157
+CGSL AR+LFD PD RDL++WN+IL+A A +A+ +GF LFR LR S+ T
Sbjct: 703 KCGSLSSARKLFDTTPDTNRDLVTWNAILSALA----AHADKSHDGFHLFRLLRRSVVST 758
Query: 158 SRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLF 217
+R TLAP+ K+CL S ASE++HGYA+KIGL WD FV+GALVNIY+KFG IREA+ LF
Sbjct: 759 TRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLF 818
Query: 218 DGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRH 277
DGM RDVVLW VM++AY + E LF + HR+G PDD +++ + V+
Sbjct: 819 DGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNIL 878
Query: 278 E-EQVQAYAIKLLLYNNN-SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTF 335
E +Q +AYA KL +Y+++ S+V++WNK LS +LQ G+ A++CFV+MI S V D +TF
Sbjct: 879 ELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTF 938
Query: 336 LVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRT------- 388
+V L VAG + L LG+QIHG ++SG V VGN LINMY K G V R+
Sbjct: 939 VVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNE 998
Query: 389 ------------------------------------DQFTLASVLRASSSLPEGLHLSKQ 412
DQFT+ASVLRA SSL G +L+ Q
Sbjct: 999 VDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQ 1058
Query: 413 IHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNN 472
IH A+K V DSFVSTALIDVY + G M EAE+LF N+DGFDLA+WNA++ GYI+S +
Sbjct: 1059 IHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGD 1118
Query: 473 SHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSG 532
KAL L+ M SGER D+IT+ A KA G L+ LKQGKQ+HA +K GF LDL V+SG
Sbjct: 1119 FPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSG 1178
Query: 533 ILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD 592
+LDMY+KCG M A+ +F++IP+PDDVAWTTMISGCV+NG+E+ AL YHQMRLS V PD
Sbjct: 1179 VLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPD 1238
Query: 593 EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFK 652
E+TFA LVKA S LTALEQGRQIHAN++KL+C+ DPFV SLVDMYAKCGNIEDA LFK
Sbjct: 1239 EYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFK 1298
Query: 653 QMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSE 712
+ + R WNAM+VGLAQHGN +E L+ F+ MK+ GV PD VTFIGVLSACS++GLVSE
Sbjct: 1299 RTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSE 1358
Query: 713 AYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGAC 772
AYENF+ M++ YGIEPE+EHYS LVDAL RAGR +EA ++I SMPFEASASM+R LL AC
Sbjct: 1359 AYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNAC 1418
Query: 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832
RVQ D ETGK VAEKL+ALEP DS+AYVLLSN++AAANQW++V SAR M++ NVKKDP
Sbjct: 1419 RVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPG 1478
Query: 833 -----------------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKER 869
D+I+ KVE ++KRI+E GYVPDTDF L+DVEEE+KE
Sbjct: 1479 FSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKEC 1538
Query: 870 ALYYHSEKLARAYGLISTPPSSVI---------------------LSNKEPLY--ANRFH 906
+LYYHSEKLA AYGL+ TPPS+ + + +E + ANRFH
Sbjct: 1539 SLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFH 1598
Query: 907 HLRDGMCPCAD 917
H R+G+C C D
Sbjct: 1599 HFRNGICSCGD 1609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550217|ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544645|gb|EEF46161.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/769 (59%), Positives = 556/769 (72%), Gaps = 61/769 (7%)
Query: 5 LQANLKPRHKHTYVIFSSFTKDTYRNLPSFSLSLLPFLQKSHFSSSSSSSQWFSILRHAI 64
L++NLKP IFS + +Y SLL F + SS SSSQ FS+LR A+
Sbjct: 669 LKSNLKPDS-----IFSLKSPHSY--------SLLSFPFRFSSLSSPSSSQCFSLLRAAV 715
Query: 65 STSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNS 124
STS+L LGK HA I+ S DRFL NNL+TMYS+CGS+ AR+LFD+ PDRDL++WN+
Sbjct: 716 STSNLHLGKCIHANIITSGLTSDRFLANNLITMYSKCGSVSSARQLFDRTPDRDLVTWNA 775
Query: 125 ILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGY 184
+L+AYA S E ++V EGF +FR LRE TS+LTLAP+LKLCL SGYV AS+ VHGY
Sbjct: 776 VLSAYARSDESEYDHVVEGFHIFRLLRERFVSTSKLTLAPMLKLCLLSGYVCASQAVHGY 835
Query: 185 ALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEV 244
A+KIGL D FVSGALVNIYSKFG +REA+ LFD MQERDVVLW VML+AY E G +E
Sbjct: 836 AVKIGLELDVFVSGALVNIYSKFGLVREARGLFDIMQERDVVLWNVMLKAYVEMGLVKEA 895
Query: 245 FHLFVDLHRSGLCPDDESVQCVLGVIS----DLGKRHEEQVQAYAIKLLLYNNNSNVVLW 300
F H+SGL PDD S++CV+ IS D G+R+ EQ+QAYA KL ++N++VV+W
Sbjct: 896 LSFFSQFHQSGLRPDDASMRCVVSGISEVGYDTGRRYIEQIQAYATKLFFCDDNTDVVMW 955
Query: 301 NKKLSGYLQVGDNHGAIECFVNMI-RSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTL 359
NKKLS YLQ G A++CF+NM+ S+V+YD+VT +V LAA GT +L LG+ IHG TL
Sbjct: 956 NKKLSEYLQAGAFWAAVDCFINMLTSSHVKYDNVTLVVVLAAATGTGDLMLGKLIHGMTL 1015
Query: 360 KSGFYSAVIVGNSLINMYSKMGCVC----------------------------------- 384
KSGF S V V NSLINMYSKMG V
Sbjct: 1016 KSGFDSVVSVANSLINMYSKMGFVSLAHTVFTGMNELDLISWNSMISCYAQNGLQKESVN 1075
Query: 385 --------GLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVY 436
GL+ D FTLASVL+A SSL EGL LSKQIHV+ K +A++FVSTALIDVY
Sbjct: 1076 LLVGLLRDGLQPDHFTLASVLKACSSLTEGLFLSKQIHVYVTKTSIIAENFVSTALIDVY 1135
Query: 437 CRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIA 496
R+G MAEAE++FENK+ FDLA WNAM+FGYI+ + K L+LF+ MH GE DE T+A
Sbjct: 1136 SRSGLMAEAEFIFENKNKFDLAAWNAMMFGYIICGDHDKGLKLFAFMHEKGESCDEYTLA 1195
Query: 497 TAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAP 556
TA KACG L+ L+QGKQ+HA A+K G DL +SSGILDMY+KCG M D +F++IP P
Sbjct: 1196 TAAKACGSLVRLEQGKQIHALAIKFGLNSDLFLSSGILDMYIKCGNMEDGHLLFDNIPVP 1255
Query: 557 DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIH 616
DDVAWT MISGCV+NG+ED ALS+Y QMRLSG++PDE+TFA L+KASSCLTALEQGRQIH
Sbjct: 1256 DDVAWTIMISGCVENGDEDRALSVYRQMRLSGILPDEYTFATLIKASSCLTALEQGRQIH 1315
Query: 617 ANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGE 676
AN+IKL+C+SDPFVG SL+DMYAKCG IEDAY LF++MD+RN V+WNAMLV LAQHG+GE
Sbjct: 1316 ANVIKLECASDPFVGTSLIDMYAKCGIIEDAYCLFRRMDVRNIVVWNAMLVSLAQHGHGE 1375
Query: 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYG 725
E L LF+ M++H ++PD VTFIGVLSACS++G VSEAY +FH M + YG
Sbjct: 1376 EALHLFKVMQSHSIKPDKVTFIGVLSACSHSGHVSEAYGHFHSMHKDYG 1424
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/816 (48%), Positives = 514/816 (62%), Gaps = 98/816 (12%)
Query: 165 LLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERD 224
LL+ +S+ + + H + G D F+S L+ +YSK G + A+ +FD ERD
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142
Query: 225 VVLWKVMLRAYA-----ENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLG-KRHE 278
+V W +L AYA +G +E HLF L S ++ VL + + G
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202
Query: 279 EQVQAYAIKLLLYNNNSNVVLWNKKLSG-----YLQVGDNHGAIECFVNMIRSNVQYDSV 333
E V YAIK+ L W+ +SG Y + G A F + +R + D V
Sbjct: 203 EGVHGYAIKIGLE--------WDVFVSGALVNIYSKCGRMRDARLLF-DWMR---ERDVV 250
Query: 334 TFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTL 393
+ + L + LG + L S F+ + GLR D+F++
Sbjct: 251 LWNMMLKGY-----VQLGLEKEAFQLFSEFHRS------------------GLRPDEFSV 287
Query: 394 ASVLRASS-SLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENK 452
+L + + L L KQ+H A+K+ +D V+ +L+++Y + G A +F +
Sbjct: 288 QLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDM 347
Query: 453 DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDE-----ITIATAVKACGCLLM 507
DL +WN+MI S+ +++ LF + G + D IT+ATA KACGCL++
Sbjct: 348 KHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVL 407
Query: 508 LKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISG 567
L QGKQ+HA+A+K+GF+ DL V+SGILDMY+KCG MV+A +FN I APDDVAWT+MISG
Sbjct: 408 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 467
Query: 568 CVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSD 627
CVDNG ED AL IYH+MR S V+PDE+TFA L+KASSC+TALEQGRQ+HAN+IKLDC SD
Sbjct: 468 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 527
Query: 628 PFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKA 687
PFVG SLVDMYAKCGNIEDAY LFK+M++RN LWNAMLVGLAQHGN EE + LF+ MK+
Sbjct: 528 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 587
Query: 688 HGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTK 747
HG+EPD V+FIG+LSACS+ GL SEAYE H M YGIEPE+EHYS LVDALGRAG +
Sbjct: 588 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 647
Query: 748 EAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807
EA ++I +MPF+ASAS++RALLGACR+QGD ETGK VA +L ALEPFDS+AYVLLSNI+A
Sbjct: 648 EADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYA 707
Query: 808 AANQWDDVTSARGEMKRKNVKKDP-----------------------ADLIFAKVEGLIK 844
AAN+WDDVT AR MKRKNVKKDP AD+I+ KVE ++K
Sbjct: 708 AANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMK 767
Query: 845 RIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPPSSVI----------- 893
I+E GYVPDT+FVLLDVE+EEKER+LYYHSEKLA AYGLISTP S+ I
Sbjct: 768 TIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGD 827
Query: 894 ----------LSNKEPLY--ANRFHHLRDGMCPCAD 917
+ +E + ANRFHH RDG+C C D
Sbjct: 828 CHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGD 863
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 919 | ||||||
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.486 | 0.451 | 0.674 | 4.2e-278 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.457 | 0.432 | 0.344 | 1.1e-121 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.479 | 0.508 | 0.359 | 5.6e-118 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.485 | 0.541 | 0.353 | 8e-117 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.508 | 0.438 | 0.378 | 4.5e-115 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.425 | 0.526 | 0.382 | 4.9e-115 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.521 | 0.511 | 0.318 | 9.9e-113 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.494 | 0.441 | 0.376 | 2.1e-111 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.524 | 0.546 | 0.360 | 5.7e-111 | |
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.511 | 0.571 | 0.323 | 4.1e-110 |
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1575 (559.5 bits), Expect = 4.2e-278, Sum P(4) = 4.2e-278
Identities = 302/448 (67%), Positives = 360/448 (80%)
Query: 384 CGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMA 443
CGL+ DQ+T+ SVL+A+SSLPEGL LSKQ+HVHAIK + V+DSFVSTALID Y RN M
Sbjct: 410 CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMK 469
Query: 444 EAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACG 503
EAE LFE + FDL WNAM+ GY S++ HK L+LF+ MH GER D+ T+AT K CG
Sbjct: 470 EAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528
Query: 504 CLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTT 563
L + QGKQ+HAYA+KSG++LDL VSSGILDMYVKCG M AQ F+ IP PDDVAWTT
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 588
Query: 564 MISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLD 623
MISGC++NGEE+ A ++ QMRL GV+PDEFT A L KASSCLTALEQGRQIHAN +KL+
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648
Query: 624 CSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFE 683
C++DPFVG SLVDMYAKCG+I+DAY LFK+++M N WNAMLVGLAQHG G+ETL+LF+
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708
Query: 684 DMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRA 743
MK+ G++PD VTFIGVLSACS++GLVSEAY++ M YGI+PE+EHYS L DALGRA
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 744 GRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803
G K+A LI SM EASASM+R LL ACRVQGDTETGK VA KL+ LEP DSSAYVLLS
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 804 NIFAAANQWDDVTSARGEMKRKNVKKDP 831
N++AAA++WD++ AR MK VKKDP
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDP 856
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.1e-121, Sum P(5) = 1.1e-121
Identities = 145/421 (34%), Positives = 244/421 (57%)
Query: 411 KQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILS 470
K++H +++K + V + V+ A + Y + GS++ A+ +F + +WNA+I G+ S
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 471 NNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVS 530
N+ +L+ M SG D T+ + + AC L L+ GK++H + +++ E DL V
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 534
Query: 531 SGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV 590
+L +Y+ CG + Q++F+ + V+W T+I+G + NG D AL ++ QM L G+
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594
Query: 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650
+ + A S L +L GR+ HA +K D F+ SL+DMYAK G+I + +
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 654
Query: 651 FKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLV 710
F + ++T WNAM++G HG +E +KLFE+M+ G PD +TF+GVL+AC+++GL+
Sbjct: 655 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 714
Query: 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILS-MPFEASASMHRALL 769
E M+ +G++P ++HY+ ++D LGRAG+ +A ++ M EA + ++LL
Sbjct: 715 HEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLL 774
Query: 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKK 829
+CR+ + E G+ VA KL LEP YVLLSN++A +W+DV R M +++K
Sbjct: 775 SSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRK 834
Query: 830 D 830
D
Sbjct: 835 D 835
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 5.6e-118, Sum P(4) = 5.6e-118
Identities = 161/448 (35%), Positives = 262/448 (58%)
Query: 386 LRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEA 445
+R + + ASV++ ++L E L ++Q+H +K + D + TAL+ Y + +M +A
Sbjct: 291 VRLSESSFASVIKLCANLKE-LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDA 349
Query: 446 EYLFENKDGF-DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGC 504
LF+ ++ +W AMI G++ ++ +A++LFS M G R +E T + + A
Sbjct: 350 LRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA--- 406
Query: 505 LLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTM 564
L + ++HA +K+ +E V + +LD YVK G + +A +F+ I D VAW+ M
Sbjct: 407 -LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465
Query: 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA-LEQGRQIHANLIKLD 623
++G GE + A+ ++ ++ G+ P+EFTF+ ++ + A + QG+Q H IK
Sbjct: 466 LAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR 525
Query: 624 CSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFE 683
S V +L+ MYAK GNIE A +FK+ ++ V WN+M+ G AQHG + L +F+
Sbjct: 526 LDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 585
Query: 684 DMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRA 743
+MK V+ D VTFIGV +AC++ GLV E + F +M I P EH S +VD RA
Sbjct: 586 EMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRA 645
Query: 744 GRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803
G+ ++A ++I +MP A +++ R +L ACRV TE G+ AEK++A++P DS+AYVLLS
Sbjct: 646 GQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLS 705
Query: 804 NIFAAANQWDDVTSARGEMKRKNVKKDP 831
N++A + W + R M +NVKK+P
Sbjct: 706 NMYAESGDWQERAKVRKLMNERNVKKEP 733
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 8.0e-117, Sum P(4) = 8.0e-117
Identities = 159/450 (35%), Positives = 256/450 (56%)
Query: 385 GLRT-DQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMA 443
GLR D T+ S+L A + + + IH ++IK+ ++ FVS LID+Y G +
Sbjct: 241 GLRAMDSVTVVSLLSACTEAGD-FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299
Query: 444 EAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACG 503
+ + +F+ DL +WN++I Y L+ +A+ LF M S + D +T+ +
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359
Query: 504 CLLMLKQGKQMHAYAMKSGFEL-DLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWT 562
L ++ + + + ++ G+ L D+ + + ++ MY K G + A+++FN +P D ++W
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWN 419
Query: 563 TMISGCVDNGEEDLALSIYHQMRLSG-VVPDEFTFAILVKASSCLTALEQGRQIHANLIK 621
T+ISG NG A+ +Y+ M G + ++ T+ ++ A S AL QG ++H L+K
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479
Query: 622 LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKL 681
D FV SL DMY KCG +EDA LF Q+ N+V WN ++ HG+GE+ + L
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 539
Query: 682 FEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741
F++M GV+PD +TF+ +LSACS++GLV E F +M+ YGI P ++HY +VD G
Sbjct: 540 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYG 599
Query: 742 RAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVL 801
RAG+ + A + I SM + AS+ ALL ACRV G+ + GK +E L +EP +VL
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 659
Query: 802 LSNIFAAANQWDDVTSARGEMKRKNVKKDP 831
LSN++A+A +W+ V R K ++K P
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTP 689
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 4.5e-115, Sum P(3) = 4.5e-115
Identities = 179/473 (37%), Positives = 263/473 (55%)
Query: 389 DQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYL 448
+Q+T S+L+ L + L L +QIH IK + +++V + LID+Y + G + A +
Sbjct: 489 NQYTYPSILKTCIRLGD-LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDI 547
Query: 449 FENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLML 508
G D+ +W MI GY N KAL F M G R DE+ + AV AC L L
Sbjct: 548 LIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 607
Query: 509 KQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGC 568
K+G+Q+HA A SGF DL + ++ +Y +CG + ++ F A D++AW ++SG
Sbjct: 608 KEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 667
Query: 569 VDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDP 628
+G + AL ++ +M G+ + FTF VKA+S ++QG+Q+HA + K S+
Sbjct: 668 QQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 727
Query: 629 FVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAH 688
V +L+ MYAKCG+I DA F ++ +N V WNA++ ++HG G E L F+ M
Sbjct: 728 EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787
Query: 689 GVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKE 748
V P+ VT +GVLSACS+ GLV + F M +YG+ P+ EHY +VD L RAG
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847
Query: 749 AGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA 808
A E I MP + A + R LL AC V + E G++ A L+ LEP DS+ YVLLSN++A
Sbjct: 848 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 907
Query: 809 ANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKEGGYVPDTDFVLLD 861
+ +WD R +MK K VKK+P + +E +K YV D + L D
Sbjct: 908 SKKWDARDLTRQKMKEKGVKKEPGQ---SWIE--VKNSIHSFYVGDQNHPLAD 955
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 4.9e-115, Sum P(4) = 4.9e-115
Identities = 150/392 (38%), Positives = 227/392 (57%)
Query: 440 GSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAV 499
G + +A LF + D +W AMI G + + +A+E F M G ++D+ + +
Sbjct: 219 GMIEDALQLFRGMEK-DSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDV 559
ACG L + +GKQ+HA +++ F+ + V S ++DMY KC + A+++F+ + + V
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 560 AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANL 619
+WT M+ G G + A+ I+ M+ SG+ PD +T + A + +++LE+G Q H
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397
Query: 620 IKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETL 679
I V SLV +Y KCG+I+D+ LF +M++R+ V W AM+ AQ G ET+
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETI 457
Query: 680 KLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739
+LF+ M HG++PD VT GV+SACS GLV + F LM +YGI P + HYS ++D
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDL 517
Query: 740 LGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY 799
R+GR +EA I MPF A LL ACR +G+ E GKW AE L+ L+P + Y
Sbjct: 518 FSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 577
Query: 800 VLLSNIFAAANQWDDVTSARGEMKRKNVKKDP 831
LLS+I+A+ +WD V R M+ KNVKK+P
Sbjct: 578 TLLSSIYASKGKWDSVAQLRRGMREKNVKKEP 609
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 9.9e-113, Sum P(4) = 9.9e-113
Identities = 155/487 (31%), Positives = 258/487 (52%)
Query: 385 GLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAE 444
G + T S L A + P+ + +H + + + + AL+ +Y + G M+E
Sbjct: 357 GKSVNYVTFTSALAACFT-PDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 415
Query: 445 AEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGC 504
+ + D+ WNA+I GY + KAL F M G + IT+ + + AC
Sbjct: 416 SRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC-- 473
Query: 505 LL---MLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAW 561
LL +L++GK +HAY + +GFE D V + ++ MY KCG + +Q +FN + + + W
Sbjct: 474 LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITW 533
Query: 562 TTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIK 621
M++ +G + L + +MR GV D+F+F+ + A++ L LE+G+Q+H +K
Sbjct: 534 NAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 593
Query: 622 LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKL 681
L D F+ + DMY+KCG I + + R+ WN ++ L +HG EE
Sbjct: 594 LGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCAT 653
Query: 682 FEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741
F +M G++P VTF+ +L+ACS+ GLV + + ++ +G+EP +EH ++D LG
Sbjct: 654 FHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLG 713
Query: 742 RAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVL 801
R+GR EA I MP + + + R+LL +C++ G+ + G+ AE L LEP D S YVL
Sbjct: 714 RSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVL 773
Query: 802 LSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKEGGYV-PDTDFVLL 860
SN+FA +W+DV + R +M KN+KK A + K++ + G P T +
Sbjct: 774 SSNMFATTGRWEDVENVRKQMGFKNIKKKQA-CSWVKLKDKVSSFGIGDRTHPQTMEIYA 832
Query: 861 DVEEEEK 867
+E+ +K
Sbjct: 833 KLEDIKK 839
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
Identities = 173/460 (37%), Positives = 272/460 (59%)
Query: 375 NMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434
+++ +M +CG+ +D LAS L+A + + GL+ KQ+H ++K D ++LID
Sbjct: 515 DLFKRMN-LCGIVSDGACLASTLKACTHV-HGLYQGKQVHCLSVKCGLDRDLHTGSSLID 572
Query: 435 VYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEIT 494
+Y + G + +A +F + + + + NA+I GY NN +A+ LF M T G EIT
Sbjct: 573 MYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYS-QNNLEEAVVLFQEMLTRGVNPSEIT 631
Query: 495 IATAVKACGCLLMLKQGKQMHAYAMKSGFELD-LCVSSGILDMYVKCGAMVDAQSIFNDI 553
AT V+AC L G Q H K GF + + +L MY+ M +A ++F+++
Sbjct: 632 FATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSEL 691
Query: 554 PAPDDVA-WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQG 612
+P + WT M+SG NG + AL Y +MR GV+PD+ TF +++ S L++L +G
Sbjct: 692 SSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG 751
Query: 613 RQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR-NTVLWNAMLVGLAQ 671
R IH+ + L D +L+DMYAKCG+++ + +F +M R N V WN+++ G A+
Sbjct: 752 RAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAK 811
Query: 672 HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVE 731
+G E+ LK+F+ M+ + PD +TF+GVL+ACS+ G VS+ + F +M +YGIE V+
Sbjct: 812 NGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVD 871
Query: 732 HYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791
H + +VD LGR G +EA + I + + A + +LLGACR+ GD G+ AEKL+ L
Sbjct: 872 HVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIEL 931
Query: 792 EPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP 831
EP +SSAYVLLSNI+A+ W+ + R M+ + VKK P
Sbjct: 932 EPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVP 971
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
Identities = 175/486 (36%), Positives = 278/486 (57%)
Query: 346 DNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPE 405
D +++ + T+ G+ +V S + M+ + + + D T++SVLRA L +
Sbjct: 266 DEMDVRDSVSYNTMICGYLKLEMVEES-VRMFLEN--LDQFKPDLLTVSSVLRACGHLRD 322
Query: 406 GLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIF 465
L L+K I+ + +K V +S V LIDVY + G M A +F + + D +WN++I
Sbjct: 323 -LSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIIS 381
Query: 466 GYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFEL 525
GYI S + +A++LF M E+ D IT + L LK GK +H+ +KSG +
Sbjct: 382 GYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICI 441
Query: 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMR 585
DL VS+ ++DMY KCG + D+ IF+ + D V W T+IS CV G+ L + QMR
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMR 501
Query: 586 LSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIE 645
S VVPD TF + + + L A G++IH L++ S+ +G +L++MY+KCG +E
Sbjct: 502 KSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLE 561
Query: 646 DAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705
++ +F++M R+ V W M+ +G GE+ L+ F DM+ G+ PDSV FI ++ ACS
Sbjct: 562 NSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
Query: 706 YTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMH 765
++GLV E F M+ Y I+P +EHY+ +VD L R+ + +A E I +MP + AS+
Sbjct: 622 HSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIW 681
Query: 766 RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825
++L ACR GD ET + V+ +++ L P D +L SN +AA +WD V+ R +K K
Sbjct: 682 ASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741
Query: 826 NVKKDP 831
++ K+P
Sbjct: 742 HITKNP 747
|
|
| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 4.1e-110, Sum P(4) = 4.1e-110
Identities = 153/473 (32%), Positives = 260/473 (54%)
Query: 361 SGFYSAVIVGNSLINMYSKMGCV--CGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAI 418
+G S + + + C+ G + +T + L+AS L +K +H +
Sbjct: 216 AGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLG-AFDFAKGVHGQIL 274
Query: 419 KNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALE 478
K V D V L+ +Y + G M++A +F D+ W+ MI + + ++A++
Sbjct: 275 KTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVD 334
Query: 479 LFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYV 538
LF M + +E T+++ + C G+Q+H +K GF+LD+ VS+ ++D+Y
Sbjct: 335 LFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYA 394
Query: 539 KCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAI 598
KC M A +F ++ + ++V+W T+I G + GE A S++ + + V E TF+
Sbjct: 395 KCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSS 454
Query: 599 LVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN 658
+ A + L +++ G Q+H IK + + V SL+DMYAKCG+I+ A +F +M+ +
Sbjct: 455 ALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETID 514
Query: 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFH 718
WNA++ G + HG G + L++ + MK +P+ +TF+GVLS CS GL+ + E F
Sbjct: 515 VASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFE 574
Query: 719 LMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDT 778
M +GIEP +EHY+ +V LGR+G+ +A +LI +P+E S + RA+L A Q +
Sbjct: 575 SMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNE 634
Query: 779 ETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP 831
E + AE+++ + P D + YVL+SN++A A QW +V S R MK VKK+P
Sbjct: 635 EFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEP 687
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SMZ2 | PP347_ARATH | No assigned EC number | 0.5614 | 0.9260 | 0.8595 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 919 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-118 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-117 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-57 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-55 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-45 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-118
Identities = 182/553 (32%), Positives = 291/553 (52%), Gaps = 46/553 (8%)
Query: 411 KQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILS 470
K ++ H + D ++ ++ ++ + G + +A LF+ +LA+W +I G + +
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202
Query: 471 NNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVS 530
N +A LF M G + T ++A L + G+Q+H +K+G D VS
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 531 SGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV 590
++DMY KCG + DA+ +F+ +P VAW +M++G +G + AL +Y++MR SGV
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650
D+FTF+I+++ S L LE +Q HA LI+ D +LVD+Y+K G +EDA +
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 651 FKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLV 710
F +M +N + WNA++ G HG G + +++FE M A GV P+ VTF+ VLSAC Y+GL
Sbjct: 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLG 770
+ +E F M E + I+P HY+ +++ LGR G EA +I PF+ + +M ALL
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
Query: 771 ACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK----- 825
ACR+ + E G+ AEKL + P + YV+L N++ ++ + + +KRK
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
Query: 826 ------NVKKDPADLIFA------------KVEGLIKRIKEGGYVPDTDFVLLDVEEEEK 867
VKK K++ L+K I E GYV + + +L DV+E+E+
Sbjct: 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEE 622
Query: 868 ERALYYHSEKLARAYGLISTPPSS--------------------VILSNKEPLY---ANR 904
+ + YHSEKLA A+GLI+T + + L K + A+R
Sbjct: 623 KVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASR 682
Query: 905 FHHLRDGMCPCAD 917
FHH + G C C D
Sbjct: 683 FHHFKLGKCSCGD 695
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 378 bits (972), Expect = e-117
Identities = 244/841 (29%), Positives = 389/841 (46%), Gaps = 111/841 (13%)
Query: 139 NVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSG 198
+ + +L S++E L +LC V V AL +
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125
Query: 199 ALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCP 258
A+++++ +FG++ A ++F M ERD+ W V++ YA+ G+ +E L+ + +G+ P
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 259 DDESVQCVL---GVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHG 315
D + CVL G I DL + E V A+ ++ + +V + N ++ Y++ GD
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGRE--VHAHVVR---FGFELDVDVVNALITMYVKCGDVVS 240
Query: 316 AIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLIN 375
A F M R + I N++I+
Sbjct: 241 ARLVFDRMPRRDC---------------------------------------ISWNAMIS 261
Query: 376 MYSKMG-CVCGLR-----------TDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTV 423
Y + G C+ GL D T+ SV+ A L + L +++H + +K
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFA 320
Query: 424 ADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHM 483
D V +LI +Y GS EAE +F + D +W AMI GY + KALE ++ M
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 484 HTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAM 543
DEITIA+ + AC CL L G ++H A + G + V++ +++MY KC +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 544 VDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKAS 603
A +F++IP D ++WT++I+G N AL + QM L+ + P+ T + A
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
Query: 604 SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWN 663
+ + AL G++IHA++++ D F+ +L+D+Y +CG + A+ F + ++ V WN
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWN 558
Query: 664 AMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREK 723
+L G HG G ++LF M GV PD VTFI +L ACS +G+V++ E FH M EK
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
Query: 724 YGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKW 783
Y I P ++HY+ +VD LGRAG+ EA I MP ++ ALL ACR+ E G+
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678
Query: 784 VAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDP------------ 831
A+ + L+P Y+LL N++A A +WD+V R M+ + DP
Sbjct: 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738
Query: 832 ADL-----------IFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLAR 880
A L I +EG +++K G + ++E + + HSE+LA
Sbjct: 739 AFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDD-IFCGHSERLAI 797
Query: 881 AYGLISTPPSSVILSNKEPLY------------------------ANRFHHLRDGMCPCA 916
A+GLI+T P I K LY +FHH +DG C C
Sbjct: 798 AFGLINTVPGMPIWVTKN-LYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCG 856
Query: 917 D 917
D
Sbjct: 857 D 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-57
Identities = 168/647 (25%), Positives = 272/647 (42%), Gaps = 119/647 (18%)
Query: 72 GKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAYAH 131
G +R L+S L N +++M+ R G LV+A +F KMP+RDL SWN ++ YA
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 132 SGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLV 191
+G E L+ + + T +L+ C + VH + ++ G
Sbjct: 165 AGY-----FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219
Query: 192 WDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDL 251
D V AL+ +Y K G + A+ +FD M RD + W M+ Y ENG E LF +
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 252 HRSGLCPDDESVQCVLGVISDLG-KRHEEQVQAYAIK------LLLYNN----------- 293
+ PD ++ V+ LG +R ++ Y +K + + N+
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 294 -----------NSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAV 342
+ V W +SGY + G A+E + M + NV D +T L+A
Sbjct: 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 343 AGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSS 402
A +L++G ++H + G S V+V N+LI MYSK C+
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI------------------- 440
Query: 403 LPEGLHLSKQIHV-HAIKNDTVADSFVS-TALIDVYCRNGSMAEAEYLFENKDGFDLATW 460
K + V H I V +S T++I N EA F
Sbjct: 441 -------DKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQ--------- 480
Query: 461 NAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMK 520
M+ L NS +T+ A+ AC + L GK++HA+ ++
Sbjct: 481 --MLLT--LKPNS-------------------VTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 521 SGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSI 580
+G D + + +LD+YV+CG M A + FN D V+W +++G V +G+ +A+ +
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 581 YHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQ----------IHANLIKLDCSSDPFV 630
+++M SGV PDE TF L+ A S + QG + I NL C
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC------ 630
Query: 631 GISLVDMYAKCGNIEDAYILFKQMDMR-NTVLWNAMLVGLAQHGNGE 676
+VD+ + G + +AY +M + + +W A+L H + E
Sbjct: 631 ---VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 2e-55
Identities = 145/530 (27%), Positives = 241/530 (45%), Gaps = 58/530 (10%)
Query: 58 SILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDR 117
+LR DL G+ HA ++ D + N L+TMY +CG +V AR +FD+MP R
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 118 DLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWA 177
D ISWN++++ Y +GE EG LF ++RE +T+ ++ C G
Sbjct: 252 DCISWNAMISGYFENGECL-----EGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 178 SETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAE 237
+HGY +K G D V +L+ +Y G EA+ +F M+ +D V W M+ Y +
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 238 NGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLG------KRHEEQVQAYAIKLLLY 291
NG ++ + + + + PD+ ++ VL + LG K HE + L+ Y
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK---GLISY 423
Query: 292 NNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNV-QYDSVTFLVALAAVAGTDNLNL 350
VV+ N + Y + A+E F N+ +V + S+
Sbjct: 424 -----VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI----------------- 461
Query: 351 GQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLS 410
I G L + + A+I + +M + L+ + TL + L A + + L
Sbjct: 462 ---IAGLRLNNRCFEALI-------FFRQM--LLTLKPNSVTLIAALSACARI-GALMCG 508
Query: 411 KQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILS 470
K+IH H ++ D F+ AL+D+Y R G M A F N D+ +WN ++ GY+
Sbjct: 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAH 567
Query: 471 NNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQM-HAYAMKSGFELDLCV 529
A+ELF+ M SG DE+T + + AC M+ QG + H+ K +L
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 530 SSGILDMYVKCGAMVDAQSIFNDIP-APDDVAWTTMISGC-----VDNGE 573
+ ++D+ + G + +A + N +P PD W +++ C V+ GE
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 4e-45
Identities = 95/291 (32%), Positives = 155/291 (53%), Gaps = 2/291 (0%)
Query: 468 ILSNNSHKALELFSHMHTSGE-RLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELD 526
+ +ALELF + L T V+AC L ++ K ++ + SGFE D
Sbjct: 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157
Query: 527 LCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRL 586
+ + +L M+VKCG ++DA+ +F+++P + +W T+I G VD G A +++ +M
Sbjct: 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 587 SGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIED 646
G + TF ++++AS+ L + G+Q+H ++K D FV +L+DMY+KCG+IED
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 647 AYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSY 706
A +F M + TV WN+ML G A HG EE L L+ +M+ GV D TF ++ S
Sbjct: 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
Query: 707 TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP 757
L+ A + H + G ++ + LVD + GR ++A + MP
Sbjct: 338 LALLEHA-KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 1e-41
Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 41/326 (12%)
Query: 79 ILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAYAHSGEGNAE 138
+ +S PD+++ N ++ M+ +CG L+ ARRLFD+MP+R+L SW +I+ G +A
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII-----GGLVDAG 203
Query: 139 NVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSG 198
N E F LFR + E + T +L+ G A + +H LK G+V D FVS
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 199 ALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCP 258
AL+++YSK G I +A+ +FDGM E+ V W ML YA +G+ EE L+ ++ SG+
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 259 DDESVQCVLGVISDLGK-RHEEQVQAYAIK----LLLYNNNS------------------ 295
D + ++ + S L H +Q A I+ L + N +
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 296 ------NVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVA------ 343
N++ WN ++GY G A+E F MI V + VTFL L+A
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 344 -GTDNLNLGQQIHGTTLKSGFYSAVI 368
G + + H ++ Y+ +I
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMI 469
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 8e-36
Identities = 84/303 (27%), Positives = 148/303 (48%), Gaps = 1/303 (0%)
Query: 461 NAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMK 520
N+ + +AL+L M +DE + C +++G ++ + A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 521 SGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSI 580
S L + + + +L M+V+ G +V A +F +P D +W ++ G G D AL +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 581 YHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAK 640
YH+M +GV PD +TF +++ + L +GR++HA++++ D V +L+ MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 641 CGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV 700
CG++ A ++F +M R+ + WNAM+ G ++G E L+LF M+ V+PD +T V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 701 LSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEA 760
+SAC G E H K G +V + L+ G EA ++ M +
Sbjct: 295 ISACELLGDERLGRE-MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 761 SAS 763
+ S
Sbjct: 354 AVS 356
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-26
Identities = 57/222 (25%), Positives = 111/222 (50%), Gaps = 10/222 (4%)
Query: 60 LRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDL 119
LR + G+ H +L + + D F++ L+ MYS+CG + AR +FD MP++
Sbjct: 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT 290
Query: 120 ISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASE 179
++WNS+LA YA G E L+ +R+S + T + ++++ + ++
Sbjct: 291 VAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 180 TVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENG 239
H ++ G D + ALV++YSK+G++ +A+ +FD M ++++ W ++ Y +G
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 240 FGEEVFHLFVDLHRSGLCPDDESVQCVLGV-----ISDLGKR 276
G + +F + G+ P+ + VL +S+ G
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 70/262 (26%), Positives = 106/262 (40%), Gaps = 44/262 (16%)
Query: 296 NVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIH 355
N+ W + G + G+ A F M + TF+V L A AG + GQQ+H
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 356 GTTLKSGFYSAVIVGNSLINMYSKMG---------------------------------- 381
LK+G V +LI+MYSK G
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307
Query: 382 ---------CVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTAL 432
G+ DQFT + ++R S L L +KQ H I+ D +TAL
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL-LEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 433 IDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDE 492
+D+Y + G M +A +F+ +L +WNA+I GY KA+E+F M G +
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
Query: 493 ITIATAVKACGCLLMLKQGKQM 514
+T + AC + +QG ++
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 4e-13
Identities = 68/318 (21%), Positives = 120/318 (37%), Gaps = 81/318 (25%)
Query: 556 PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQI 615
D +TT+IS C +G+ D ++H+M +GV + TF
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG------------------ 511
Query: 616 HANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNT----VLWNAMLVGLAQ 671
+L+D A+ G + A+ + M +N V++NA++ Q
Sbjct: 512 -----------------ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 672 HGNGEETLKLFEDMKA--HGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE------- 722
G + + +MKA H ++PD +T ++ AC+ G V A E + ++ E
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 723 ---------------------------KYGIEPEVEHYSFLVDALGRAGRTKEAGELILS 755
K G++P+ +S LVD G AG +A E++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 756 MPFEA---SASMHRALLGACRVQGDTETGKWVAE--KLMALEPFDSSAYVLLSNIFAAAN 810
+ + +L+GAC + + + E K + L P S+ L++ + N
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL-CEGN 733
Query: 811 QWDDVTSARGEMKRKNVK 828
Q EMKR +
Sbjct: 734 QLPKALEVLSEMKRLGLC 751
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 2e-10
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 556 PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKA 602
PD V + T+I G G+ + AL ++++M+ G+ P+ +T++IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-10
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSAC 704
+ V +N ++ G + G EE LKLF +MK G++P+ T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-10
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 39 LPFLQKSHFSSSSSSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMY 98
L F ++ + +S + L L+ GK HA +L + D FL N L+ +Y
Sbjct: 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 99 SRCGSLVYARRLFDKMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTS 158
RCG + YA F+ ++D++SWN +L Y G+G E LF + ES
Sbjct: 535 VRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKG--SMAVE---LFNRMVESGVNPD 588
Query: 159 RLTLAPLLKLCLSSGYVWAS-ETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLF 217
+T LL C SG V E H K + + +V++ + GK+ EA
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 218 DGMQ-ERDVVLWKVMLRA 234
+ M D +W +L A
Sbjct: 649 NKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 7e-07
Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 28/225 (12%)
Query: 579 SIYHQMRLSGVVPDEFTFAILVKASSCLT----------------ALEQGRQIHANLIKL 622
+ + V + F FA L++ + T AL R + +K
Sbjct: 411 KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470
Query: 623 DCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR----NTVLWNAMLVGLAQHGNGEET 678
DC + +L+ AK G ++ + +F +M N + A++ G A+ G +
Sbjct: 471 DCK----LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 679 LKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMR-EKYGIEPEVEHYSFLV 737
+ M++ V+PD V F ++SAC +G V A++ M+ E + I+P+ L+
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 738 DALGRAG---RTKEAGELILSMPFEASASMHRALLGACRVQGDTE 779
A AG R KE ++I + + ++ + +C +GD +
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 561 WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620
+T ++ C G+ D ALSIY M+ GV PDE F+ LV + L++ +I +
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILF---KQMDMRNTV-LWNAMLVGLAQHGNGE 676
K SL+ + N + A L+ K + +R TV NA++ L +
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 677 ETLKLFEDMKAHGVEPDSVTFIGVLSAC 704
+ L++ +MK G+ P+++T+ +L A
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 559 VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDE 593
V + T+I G G + AL ++ +M+ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS 694
V +N ++ GL + G EE L+LF++MK G+EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 842 LIKRIKEGGYVPDTDFVLLDVEEEEKER------ALYYHSEKLARAYGLISTPPSSV 892
L +RIK G VP+T + DV+ EE L H+EK A AYGL++T V
Sbjct: 25 LFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHAEKQALAYGLLTTRIIKV 81
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGV 690
V +N+++ G + G EE L+LF++MK GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 559 VAWTTMISGCVDNGEEDLALSIYHQMRLSGV 589
V + ++ISG G+ + AL ++ +M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 5e-04
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 456 DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKAC 502
D+ T+N +I GY +AL+LF+ M G + + T + +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 6e-04
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 692 PDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGR 742
PD VT+ ++ G V EA + F+ M+++ GI+P V YS L+D L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP 692
+NA+L+ LA+ G+ + L + E+MKA G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 296 NVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTF 335
+VV +N + GY + G A++ F M + ++ + T+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 919 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.32 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.32 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.29 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.11 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.09 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.02 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.97 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.95 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.92 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.83 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.81 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.68 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.57 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.54 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.42 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.31 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.76 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.69 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.63 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.38 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.28 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.22 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.17 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.16 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.95 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.94 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.9 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.7 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.62 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.49 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.22 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.94 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.83 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.88 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.76 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.65 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.48 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.29 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.67 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.58 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.45 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.12 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.07 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.82 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.57 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.46 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.37 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.76 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.22 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.14 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.06 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.88 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.71 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.17 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.63 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.43 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.36 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.82 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.74 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.65 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.43 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.06 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.02 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.32 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.03 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.61 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 86.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.02 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.81 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.47 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.82 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.68 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 83.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 83.31 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.27 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.64 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 81.08 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.06 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 80.25 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-131 Score=1194.53 Aligned_cols=763 Identities=31% Similarity=0.523 Sum_probs=744.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHh
Q 002460 116 DRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEF 195 (919)
Q Consensus 116 ~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~ 195 (919)
.++..++|.+|.+|++.| .+++|+.+|+.|.+.|+.|+..||..++++|.+.+.+..|.++|..+.+.|..++..
T Consensus 48 ~~~~~~~n~~i~~l~~~g-----~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHG-----QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch
Confidence 567788999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcc
Q 002460 196 VSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGK 275 (919)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (919)
++|+||++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|.+|+..+.
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred h-hHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHH
Q 002460 276 R-HEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQI 354 (919)
Q Consensus 276 ~-~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~ 354 (919)
. .+.+++..+.+.+. .+|+.+||++|.+|++.|++++|.++|++|. .||.+||+++|.+|++.|+.++|.++
T Consensus 203 ~~~~~~~~~~~~~~g~---~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 203 LARGREVHAHVVRFGF---ELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hhhHHHHHHHHHHcCC---CcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 5 78899998888764 4789999999999999999999999999996 58999999999999999999999999
Q ss_pred HHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHH
Q 002460 355 HGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434 (919)
Q Consensus 355 ~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~ 434 (919)
+..|.+.|+.||..+|+.+|.++++.| ..+.++++|..+.+.|+.||..+||+||+
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g------------------------~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLG------------------------DERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcC------------------------ChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 999999999999999999999999976 56789999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQM 514 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 514 (919)
+|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh
Q 002460 515 HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594 (919)
Q Consensus 515 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 594 (919)
|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|+. +++||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCC
Q 002460 595 TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGN 674 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 674 (919)
||+++|.+|++.|.++.+.++|..+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELIL 754 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~ 754 (919)
.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+|+|+++||.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999778999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch--
Q 002460 755 SMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-- 832 (919)
Q Consensus 755 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-- 832 (919)
+|+.+||..+|++|+++|+.||+.+.|+.+++++++++|++++.|++|+|+|+..|+|++|.++++.|+++|++|+||
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------HHHHHHHHHHHHHHHhCCcccCCCcccccCCHHHHHHhHhhhhHHHHHHHhhccCCCCC
Q 002460 833 ---------------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPPSS 891 (919)
Q Consensus 833 ---------------------~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~ 891 (919)
++||.+|+++..+|++.||+||+..++ +++||+||..|++||||||+|||||+||||+
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~ 808 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGM 808 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCC
Confidence 889999999999999999999999988 5588999999999999999999999999999
Q ss_pred cEEEEcC---------------------C--ccCCccccccCCccCCCC
Q 002460 892 VILSNKE---------------------P--LYANRFHHLRDGMCPCAD 917 (919)
Q Consensus 892 ~~~~~kn---------------------i--rd~~r~h~f~~g~csc~d 917 (919)
||||+|| | ||++|||||+||+|||||
T Consensus 809 ~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 809 PIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999 4 999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-107 Score=963.75 Aligned_cols=566 Identities=34% Similarity=0.568 Sum_probs=549.5
Q ss_pred CCcchhhhHhHhhhhcCChhhHHHHHHHHHhhc-CCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHH
Q 002460 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSN-VQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSL 373 (919)
Q Consensus 295 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 373 (919)
++..+|+++|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466789999999999999999999999999765 7899999999999999999999999999999888877776666666
Q ss_pred HHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 002460 374 INMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKD 453 (919)
Q Consensus 374 i~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~ 453 (919)
+++|+++ |++++|.++|++|+
T Consensus 165 i~~y~k~-----------------------------------------------------------g~~~~A~~lf~~m~ 185 (697)
T PLN03081 165 LLMHVKC-----------------------------------------------------------GMLIDARRLFDEMP 185 (697)
T ss_pred HHHHhcC-----------------------------------------------------------CCHHHHHHHHhcCC
Confidence 6665555 57899999999999
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHH
Q 002460 454 GFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGI 533 (919)
Q Consensus 454 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 533 (919)
++|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++++|..+.+.|+.+|..++|+|
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHH
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 613 (919)
+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
++|..+.+.|+.||..++++||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002460 694 SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACR 773 (919)
Q Consensus 694 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 773 (919)
.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+++|++++|.+++++|+.+|+..+|++|+.+|+
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch---------------------
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA--------------------- 832 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~--------------------- 832 (919)
.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~ 585 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHP 585 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHHHHhCCcccCCCcccccCCHHHHHHhHhhhhHHHHHHHhhccCCCCCcEEEEcC------------
Q 002460 833 --DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPPSSVILSNKE------------ 898 (919)
Q Consensus 833 --~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~~~~kn------------ 898 (919)
++||++|+++..+|++.||+||+.+++||+++++|+..+++||||||+|||||+||||+||||+||
T Consensus 586 ~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 665 (697)
T PLN03081 586 QSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIK 665 (697)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------C--ccCCccccccCCccCCCCCC
Q 002460 899 ---------P--LYANRFHHLRDGMCPCADNC 919 (919)
Q Consensus 899 ---------i--rd~~r~h~f~~g~csc~d~~ 919 (919)
| ||++|||||+||+|||||||
T Consensus 666 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 666 FIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 3 99999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-90 Score=838.69 Aligned_cols=645 Identities=25% Similarity=0.402 Sum_probs=620.9
Q ss_pred CCCCCChhhHHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHH
Q 002460 47 FSSSSSSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSIL 126 (919)
Q Consensus 47 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li 126 (919)
.+.+|+..+|..++++|.+.+.+..|.++|+.+++.|..++..++|+||++|+++|+++.|+++|++|++||+++||+||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 002460 127 AAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSK 206 (919)
Q Consensus 127 ~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 206 (919)
.+|++.| ++++|+++|++|...|+.||.+||+++|++|++.+++..+.++|..+.+.|+.||+.++|+||++|++
T Consensus 160 ~~~~~~g-----~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 160 GGYAKAG-----YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHhCC-----CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcch-hHHHHHHHH
Q 002460 207 FGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKR-HEEQVQAYA 285 (919)
Q Consensus 207 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~~~~~~~~ 285 (919)
+|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.+.. .+.+++..+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975 788999988
Q ss_pred HHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCc
Q 002460 286 IKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYS 365 (919)
Q Consensus 286 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 365 (919)
.+.+. .||+.+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++++.|.+.|+.|
T Consensus 315 ~~~g~---~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 315 VKTGF---AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHhCC---ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 88764 4889999999999999999999999999996 5899999999999999999999999999999999999
Q ss_pred cchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 002460 366 AVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEA 445 (919)
Q Consensus 366 ~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 445 (919)
|..++++++.+|++.| .++.+.++|+.+.+.|+.|+..++|+||++|+++|++++|
T Consensus 388 d~~t~~~ll~a~~~~g------------------------~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 388 DEITIASVLSACACLG------------------------DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred CceeHHHHHHHHhccc------------------------hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999977 6789999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 002460 446 EYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFEL 525 (919)
Q Consensus 446 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 525 (919)
.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|.++.++++|..+.+.|+.+
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999986 699999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcc
Q 002460 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSC 605 (919)
Q Consensus 526 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 605 (919)
|..++|+|+++|+++|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHH-HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeehHHHHHHHhcCCHHHHHHHHH
Q 002460 606 LTALEQGRQIHANLI-KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD-MRNTVLWNAMLVGLAQHGNGEETLKLFE 683 (919)
Q Consensus 606 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 683 (919)
.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999998 78999999999999999999999999999999996 7999999999999999999999999999
Q ss_pred HHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002460 684 DMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH 732 (919)
Q Consensus 684 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 732 (919)
++.+ +.|+.. .|..+.+.|+..|++++|.++.+.|.++ |+++++..
T Consensus 682 ~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 682 HIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCCc
Confidence 9988 578654 6777788999999999999999999997 99887643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=641.06 Aligned_cols=474 Identities=25% Similarity=0.436 Sum_probs=444.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcH
Q 002460 116 DRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESI-TFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDE 194 (919)
Q Consensus 116 ~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~ 194 (919)
.++.++||++|.+|++.| ++++|+++|+.|...+ ..||..||+.++++|++.++++.+.++|..|.+.|+.||+
T Consensus 84 ~~~~~~~~~~i~~l~~~g-----~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACG-----RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CCCceeHHHHHHHHHcCC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 467889999999999999 9999999999999865 8899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhc
Q 002460 195 FVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLG 274 (919)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (919)
.+||+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l-------- 230 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM-------- 230 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999988887776666666
Q ss_pred chhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHH
Q 002460 275 KRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQI 354 (919)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~ 354 (919)
+.+|++.|+.+.|+++
T Consensus 231 ----------------------------------------------------------------l~a~~~~~~~~~~~~l 246 (697)
T PLN03081 231 ----------------------------------------------------------------LRASAGLGSARAGQQL 246 (697)
T ss_pred ----------------------------------------------------------------HHHHhcCCcHHHHHHH
Confidence 8888888888888888
Q ss_pred HHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHH
Q 002460 355 HGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434 (919)
Q Consensus 355 ~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~ 434 (919)
|..+.+.|+.+|..++|+||++|+++|
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g----------------------------------------------------- 273 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCG----------------------------------------------------- 273 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCC-----------------------------------------------------
Confidence 888888887777666666666665554
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQM 514 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 514 (919)
++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|+++
T Consensus 274 ------~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 ------DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred ------CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh
Q 002460 515 HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594 (919)
Q Consensus 515 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 594 (919)
|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHH-cCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeehHHHHHHHhc
Q 002460 595 TFAILVKASSCLTALEQGRQIHANLIK-LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD-MRNTVLWNAMLVGLAQH 672 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~ 672 (919)
||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+ .|+..+|++|+.+|..+
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999975 6999999999999999999999999999999997 68899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 002460 673 GNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP 728 (919)
Q Consensus 673 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 728 (919)
|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.++ |+..
T Consensus 508 g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 508 KNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 999999999999875 5675 568999999999999999999999999886 7754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=637.95 Aligned_cols=529 Identities=17% Similarity=0.208 Sum_probs=464.3
Q ss_pred CCCCcchhhHHHHHHHhCCChhHHHHHhccCCCCCcchH-----HHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCC
Q 002460 84 QIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISW-----NSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTS 158 (919)
Q Consensus 84 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~-----n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~ 158 (919)
..++...|..+++.|+++|++++|+++|++|++++++.| +.++.+|++.| ..++|+.+|+.|.. ||
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-----~~~eAl~lf~~M~~----pd 436 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-----AVKEAFRFAKLIRN----PT 436 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-----CHHHHHHHHHHcCC----CC
Confidence 346677889999999999999999999999998776655 45667799999 89999999999974 99
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCC----CCCceeHHHHHHH
Q 002460 159 RLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQ----ERDVVLWKVMLRA 234 (919)
Q Consensus 159 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~ 234 (919)
..||+.+|++|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4899999999999
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChh
Q 002460 235 YAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNH 314 (919)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~ 314 (919)
|++.|++++|+++|++|.+.|+.||.+||+.+ |.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL-------------------------------------I~a~~k~G~~d 559 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-------------------------------------ISACGQSGAVD 559 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------------------HHHHHHCCCHH
Confidence 99999999999999999999999875555554 88889999999
Q ss_pred hHHHHHHHHHh--hcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhh
Q 002460 315 GAIECFVNMIR--SNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFT 392 (919)
Q Consensus 315 ~A~~l~~~m~~--~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~ 392 (919)
+|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.|+
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-------------------------- 613 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-------------------------- 613 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--------------------------
Confidence 99999999976 67889999999999999998888888888888877766554
Q ss_pred HHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 002460 393 LASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNN 472 (919)
Q Consensus 393 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 472 (919)
..+||++|.+|++.|+
T Consensus 614 ----------------------------------------------------------------~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 614 ----------------------------------------------------------------PEVYTIAVNSCSQKGD 629 (1060)
T ss_pred ----------------------------------------------------------------hHHHHHHHHHHHhcCC
Confidence 4456666666677778
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhcc
Q 002460 473 SHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFND 552 (919)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 552 (919)
+++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCc
Q 002460 553 IP----APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDP 628 (919)
Q Consensus 553 m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 628 (919)
|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.||.
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 95 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHH----HHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 002460 629 FVGISLVDMY----AKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSAC 704 (919)
Q Consensus 629 ~~~~~li~~y----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 704 (919)
.+|++|+.++ .++++..++...|+.+...+...|+ ++|+.+|++|++.|+.||..||+.++.++
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 9999999774 3444444444444443333444444 56999999999999999999999999888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM---PFEASAS 763 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m---~~~p~~~ 763 (919)
+..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++| ++.|+..
T Consensus 858 ~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888888888888887664 7777889999999998543 47899999998 5666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-68 Score=626.42 Aligned_cols=534 Identities=17% Similarity=0.205 Sum_probs=475.5
Q ss_pred CChhhHHHHHHHhhcCCCchhhhHHHHHHHhcCC-CCCcchhhHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHH
Q 002460 51 SSSSQWFSILRHAISTSDLLLGKSTHARILNSSQ-IPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAY 129 (919)
Q Consensus 51 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~ 129 (919)
++...|..++..|.+.|++..|.+++..|.+.|+ .++...++.++..|++.|.+++|..+|+.|+.||..+||.+|.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4556788899999999999999999999999995 567788899999999999999999999999999999999999999
Q ss_pred HhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 002460 130 AHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGK 209 (919)
Q Consensus 130 ~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (919)
++.| ++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.||..+||+||.+|++.|+
T Consensus 448 ~k~g-----~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 448 ASSQ-----DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HhCc-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCC----CCceeHHHHHHHHHHcCCchHHHHHHHHHHH--CCCCCChhhHHHHHHHhhhhcchhHHHHHH
Q 002460 210 IREAKFLFDGMQE----RDVVLWKVMLRAYAENGFGEEVFHLFVDLHR--SGLCPDDESVQCVLGVISDLGKRHEEQVQA 283 (919)
Q Consensus 210 ~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 283 (919)
+++|.++|++|.+ ||.++||+||.+|++.|++++|.++|++|.. .|+.||.+|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT--------------------- 581 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT--------------------- 581 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH---------------------
Confidence 9999999999964 8999999999999999999999999999986 577887555
Q ss_pred HHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCC
Q 002460 284 YAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGF 363 (919)
Q Consensus 284 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 363 (919)
||+||.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++++.|.+.|+
T Consensus 582 ----------------ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 582 ----------------VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred ----------------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 5555999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 002460 364 YSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMA 443 (919)
Q Consensus 364 ~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 443 (919)
.||..+|++||++|++.| .++.+.+++..|.+.|+.||..+|++||.+|+++|+++
T Consensus 646 ~PD~~TynsLI~a~~k~G------------------------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAG------------------------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred CCCHHHHHHHHHHHHhCC------------------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999977 57889999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 002460 444 EAEYLFENKD----GFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM 519 (919)
Q Consensus 444 ~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 519 (919)
+|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|.+|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999984 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCChhHHHHHHHHHH----HcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH
Q 002460 520 KSGFELDLCVSSGILDMYV----KCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFT 595 (919)
Q Consensus 520 ~~g~~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 595 (919)
+.|+.||..+|++|+.++. +++...++...|+.+...+...|+ ++|+.+|++|++.|+.||..|
T Consensus 782 k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999999998743 344444444444443333444443 569999999999999999999
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCH
Q 002460 596 FAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNG 675 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 675 (919)
|+.+|.+++..+..+.+..+++.+...+..|+..+|++| |.++.+. .
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L-------------------------------i~g~~~~--~ 896 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTL-------------------------------VDGFGEY--D 896 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHH-------------------------------HHhhccC--h
Confidence 999886666666666665555555555555555555544 4444221 3
Q ss_pred HHHHHHHHHHHHcCCCCChh
Q 002460 676 EETLKLFEDMKAHGVEPDSV 695 (919)
Q Consensus 676 ~~A~~~~~~m~~~g~~p~~~ 695 (919)
++|..+|++|.+.|+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 67999999999999999865
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=369.59 Aligned_cols=754 Identities=12% Similarity=0.029 Sum_probs=551.7
Q ss_pred ChhhHHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC----CCcchHHHHHH
Q 002460 52 SSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD----RDLISWNSILA 127 (919)
Q Consensus 52 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~n~li~ 127 (919)
+...+..+...+...|+++.|...+..+.+.++. +......+...|.+.|++++|..+|..... .....+..+..
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 133 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGL 133 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHH
Confidence 4455666777888899999999999999887754 344556677788888999999888877652 23345666677
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 002460 128 AYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKF 207 (919)
Q Consensus 128 ~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (919)
.|...| ++++|...|+++.+... .+...+..+...+...|+++.|..+++.+++.. +.+...+..+...+...
T Consensus 134 ~~~~~~-----~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 206 (899)
T TIGR02917 134 AYLGLG-----QLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSL 206 (899)
T ss_pred HHHHcC-----CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhc
Confidence 778888 88888888888876432 234466667777788888888888888887764 45666777778888888
Q ss_pred CChhHHHHHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHH-Hhhhhcch-hHHHHH
Q 002460 208 GKIREAKFLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLG-VISDLGKR-HEEQVQ 282 (919)
Q Consensus 208 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~-~~~~~~ 282 (919)
|+.++|...|++..+ .+...|..++..+.+.|++++|...++++.+.. |+......... .....++. .+...+
T Consensus 207 g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 207 GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888887654 355667778888888888888888888877643 22211111100 00111111 111111
Q ss_pred HHHHH------------------------------HhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCc
Q 002460 283 AYAIK------------------------------LLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDS 332 (919)
Q Consensus 283 ~~~~~------------------------------~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 332 (919)
...++ ......+.+...+..+...+.+.|++++|...++++.+.. ..+.
T Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 363 (899)
T TIGR02917 285 QDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDP 363 (899)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 11111 1111223445566777777778888888888887776543 2345
Q ss_pred hhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccC----------CCCCchhhHHHHHHhhcC
Q 002460 333 VTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVC----------GLRTDQFTLASVLRASSS 402 (919)
Q Consensus 333 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~----------~~~p~~~~~~~~l~~~~~ 402 (919)
..+..+...+.+.|+.++|.+.+..+.+... .+...+..+...+...|+.. ...|+.......+.....
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 5666777777788888888888887766532 23445556666666666542 111221111111111111
Q ss_pred CccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 002460 403 LPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALEL 479 (919)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 479 (919)
..+..+.+..++..+... .+.++.++..+...|.+.|++++|...|+++.. .+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 245566677777666553 345677888888888899999999988887543 3556677788888888999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---C
Q 002460 480 FSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---P 556 (919)
Q Consensus 480 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~ 556 (919)
|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 98887754 3456677778888888889999998888887765 45566777888889999999999999888763 4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHH
Q 002460 557 DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVD 636 (919)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 636 (919)
+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 66788889999999999999999999988753 3355667788888888999999999998887754 345677788889
Q ss_pred HHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 637 MYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
.+.+.|++++|..+++.+.. .+...|..+...+...|++++|++.|+++.+. .|+..++..+..++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988863 35667888888899999999999999999884 56667778888889999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 714 YENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-P-FEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ . .++++.++..+...+...|+ ++|...+++++++
T Consensus 756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999988873 4456888888999999999999999999887 2 33467788899999999999 8899999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 792 EPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 792 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999998887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=364.62 Aligned_cols=745 Identities=11% Similarity=-0.001 Sum_probs=566.8
Q ss_pred hhHHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHH
Q 002460 54 SQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD---RDLISWNSILAAYA 130 (919)
Q Consensus 54 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~ 130 (919)
..+..+...+...|++..|...+.++++... .+...+..+...+...|++++|..+++++.+ ++...|..+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3455555666778889999999988887653 3445677788888889999999999887642 35567777778888
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCh
Q 002460 131 HSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKI 210 (919)
Q Consensus 131 ~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (919)
..| ++++|...|++..... +.+..++..+...+...|+++.|...++.+.+.... +..........+...|++
T Consensus 205 ~~g-----~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 205 SLG-----NIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNY 277 (899)
T ss_pred hcC-----CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCH
Confidence 888 8999999998887643 234556667777788888888888888888876532 333333344455667888
Q ss_pred hHHHHHHhcCCCCC---ceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhhhcch-hHHHHHHHH
Q 002460 211 REAKFLFDGMQERD---VVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDD-ESVQCVLGVISDLGKR-HEEQVQAYA 285 (919)
Q Consensus 211 ~~A~~~f~~m~~~~---~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~-~~~~~~~~~ 285 (919)
++|...|+++.+.+ ...+..+...+.+.|++++|...|++..+. .|+. ..+..+...+...++. .........
T Consensus 278 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887765422 223444555677778888888888877663 2333 3333333444444543 233333322
Q ss_pred HHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCc
Q 002460 286 IKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYS 365 (919)
Q Consensus 286 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 365 (919)
. ..++.+...|+.+...+.+.|++++|.++|+++.+... .+...+..+...+...|+.+.|.+.+..+.+.....
T Consensus 356 ~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 356 L----GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred H----hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc
Confidence 2 23345566777777778888888888888877765421 133445555566667777777777777776654222
Q ss_pred cchHHhHHHHHhHhcCccC----------CCCCch-hhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHH
Q 002460 366 AVIVGNSLINMYSKMGCVC----------GLRTDQ-FTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434 (919)
Q Consensus 366 ~~~~~~~li~~~~k~g~~~----------~~~p~~-~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~ 434 (919)
......++..|.+.|+.+ ...|+. ..+..+...+. ..+..+.+...+..+++.. +.+...+..+..
T Consensus 431 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 431 -GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 233445556666665541 111222 22222222222 2567788888988887754 335667788999
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQG 511 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 511 (919)
.+.+.|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998654 366789999999999999999999999998764 34566777888999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 002460 512 KQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSG 588 (919)
Q Consensus 512 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 588 (919)
..++..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+..
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999988754 56778899999999999999999999998753 466789999999999999999999999998753
Q ss_pred CCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeehHHH
Q 002460 589 VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--MRNTVLWNAML 666 (919)
Q Consensus 589 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li 666 (919)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 3457788899999999999999999999998876 4566778889999999999999999999986 45567788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRT 746 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~ 746 (919)
.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+.+.+. .+++...+..+..++...|+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-
Confidence 99999999999999999999852 335668888899999999999999999999874 34568899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 747 KEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 747 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
++|++.++++ ...| ++.+|..+..++...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8899999986 4444 5677888999999999999999999999999999999999999999999999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=253.55 Aligned_cols=641 Identities=12% Similarity=0.033 Sum_probs=411.2
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC--CCcc-hH----------
Q 002460 56 WFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD--RDLI-SW---------- 122 (919)
Q Consensus 56 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~---------- 122 (919)
+....+.+...++.+.+.+.+.++..... .|..+...+...+.+.|+.++|.+.+++..+ |+.. .+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 55556777788899999999998876542 2456677788888999999999999998753 3322 11
Q ss_pred ------HHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHh
Q 002460 123 ------NSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRL-TLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEF 195 (919)
Q Consensus 123 ------n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~ 195 (919)
-.+...+.+.| ++++|+..|+++.... +|+.. ............|+.++|...++.+++.. +.+..
T Consensus 110 ~~~~~~l~~A~ll~~~g-----~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~ 182 (1157)
T PRK11447 110 PEGRQALQQARLLATTG-----RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTG 182 (1157)
T ss_pred CchhhHHHHHHHHHhCC-----CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHH
Confidence 12223466677 7888888877776432 22211 11111111223466666666666666653 33444
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcc
Q 002460 196 VSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGK 275 (919)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (919)
....|...+...|+.++|...|+++.+.... +...+...+..+...+..|+
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~---------------- 233 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDA---------------- 233 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChh----------------
Confidence 5556666666666666666666655332110 00111111111111111111
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHH
Q 002460 276 RHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIH 355 (919)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~ 355 (919)
.+..+...+..+-.....+.|...+.++......|+.... ..-.++...|++++|...+
T Consensus 234 --------------------~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~-~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 234 --------------------SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR-AQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred --------------------hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH-HHHHHHHHCCCHHHHHHHH
Confidence 1111222222222222334444444444333222322111 1122233445555555555
Q ss_pred HHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 002460 356 GTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDV 435 (919)
Q Consensus 356 ~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~ 435 (919)
+..++.. +.+...+..|...
T Consensus 293 ~~aL~~~------------------------------------------------------------P~~~~a~~~Lg~~ 312 (1157)
T PRK11447 293 QQAVRAN------------------------------------------------------------PKDSEALGALGQA 312 (1157)
T ss_pred HHHHHhC------------------------------------------------------------CCCHHHHHHHHHH
Confidence 4444321 1134445556666
Q ss_pred HHhcCCHHHHHHHHhcCCCC--Cc---chHHH------------HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 002460 436 YCRNGSMAEAEYLFENKDGF--DL---ATWNA------------MIFGYILSNNSHKALELFSHMHTSGERLDEITIATA 498 (919)
Q Consensus 436 ~~~~g~~~~A~~~f~~~~~~--~~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 498 (919)
|.+.|++++|...|++..+. +. ..|.. ....+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~L 391 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGL 391 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 66666777777766654321 11 11222 2345667888888888888887753 2334455666
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCC------------hhhHHHHHH
Q 002460 499 VKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPD------------DVAWTTMIS 566 (919)
Q Consensus 499 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------------~~~~~~li~ 566 (919)
-..+...|++++|.+.+..+++.. +.+...+..+...|. .++.++|...++.+.... ...+..+..
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777788888888888888888764 334556666777774 457888888888765321 123455677
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHH
Q 002460 567 GCVDNGEEDLALSIYHQMRLSGVVP-DEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIE 645 (919)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 645 (919)
.+...|++++|++.|++.++. .| +...+..+...+.+.|++++|...++.+++... .+...+..+...+.+.|+.+
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHH
Confidence 788999999999999999875 34 345566788889999999999999999887543 33444445666678899999
Q ss_pred HHHHHHHhCCCCC----e---------eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH
Q 002460 646 DAYILFKQMDMRN----T---------VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSE 712 (919)
Q Consensus 646 ~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 712 (919)
+|...++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+...|+.++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 9999999886321 1 1123456678899999999999872 23355577788889999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 713 AYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 713 a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
|.+.|+...+. .| +...+..++.+|...|++++|++.++.. ...| +..++..+..++...|++++|...+++++
T Consensus 622 A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999863 45 4788999999999999999999999987 3445 45677778888889999999999999999
Q ss_pred hhCCCCCc------hHHHHHHHHhhcCCcchHHHHHHHHH-hCCCC
Q 002460 790 ALEPFDSS------AYVLLSNIFAAANQWDDVTSARGEMK-RKNVK 828 (919)
Q Consensus 790 ~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~-~~~~~ 828 (919)
+..|+++. .+..++.++...|++++|...++... ..|+.
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 98876654 56678999999999999999887764 34554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-22 Score=246.64 Aligned_cols=620 Identities=12% Similarity=0.036 Sum_probs=425.4
Q ss_pred HHHHHhCCChhHHHHHhccCC--CC-CcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhc
Q 002460 95 MTMYSRCGSLVYARRLFDKMP--DR-DLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLS 171 (919)
Q Consensus 95 i~~y~~~g~~~~A~~~f~~m~--~~-~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (919)
++.+-..++.+.|++.++++. .| |...+..++..+.+.| +.++|...+++..+. .|+...+..+..
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----~~~~A~~~l~~l~~~--~P~~~~~~~~~~---- 103 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----DSDGAQKLLDRLSQL--APDSNAYRSSRT---- 103 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhh--CCCChHHHHHHH----
Confidence 445667889999999998864 33 5667788888889999 999999999998874 355443322111
Q ss_pred CCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHH--H--HHHHHHHcCCchHHHHH
Q 002460 172 SGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWK--V--MLRAYAENGFGEEVFHL 247 (919)
Q Consensus 172 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n--~--li~~~~~~g~~~~A~~l 247 (919)
.+... .|+......+...+.+.|+.++|.+.|+...+.+..... . ........|+.++|++.
T Consensus 104 -------------~~~~~-~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~ 169 (1157)
T PRK11447 104 -------------TMLLS-TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQ 169 (1157)
T ss_pred -------------HHHhc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHH
Confidence 11111 233334455666778888888888888887653221111 1 11111235888889999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhc
Q 002460 248 FVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSN 327 (919)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 327 (919)
|+++.+. .|+ +...+..+...+...|++++|++.|+++.+..
T Consensus 170 L~~ll~~--~P~------------------------------------~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~ 211 (1157)
T PRK11447 170 LQRLNAD--YPG------------------------------------NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP 211 (1157)
T ss_pred HHHHHHh--CCC------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Confidence 9888773 354 23344556777788888888988888886532
Q ss_pred CCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccch
Q 002460 328 VQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGL 407 (919)
Q Consensus 328 ~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~ 407 (919)
.. +...-..........+....+...+... +..+-. ....
T Consensus 212 ~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~---------------l~~~p~------------------------~~~~ 251 (1157)
T PRK11447 212 AG-RDAAAQLWYGQIKDMPVSDASVAALQKY---------------LQVFSD------------------------GDSV 251 (1157)
T ss_pred Cc-hHHHHHHHHHHHhccCCChhhHHHHHHH---------------HHHCCC------------------------chHH
Confidence 10 0000000111111111111111111111 111100 1112
Q ss_pred hhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 002460 408 HLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMH 484 (919)
Q Consensus 408 ~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (919)
..+...+.........|+.. ...+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22333333332222223221 22345667789999999999987544 366789999999999999999999999998
Q ss_pred HCCCCC-CHhHHH------------HHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhc
Q 002460 485 TSGERL-DEITIA------------TAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFN 551 (919)
Q Consensus 485 ~~g~~p-~~~t~~------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 551 (919)
+..... +...+. ..-..+...|++++|...+..+++.. +.+...+..|...|...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 754221 111111 12335668899999999999999875 4556778889999999999999999999
Q ss_pred cCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--------CCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 552 DIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV--------PDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 552 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
+..+ .+...+..+...|. .++.++|+..++++...... .....+..+...+...|++++|.+.++.++
T Consensus 410 ~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 410 QALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8764 34556777777774 46789999988775432110 011234455667788999999999999998
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-- 695 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 695 (919)
+... .+..++..+...|.+.|++++|...|+++.. | +...+..+...+...|+.++|+..++++......++..
T Consensus 489 ~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 489 ALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 8653 3456677799999999999999999998753 3 45556666666778999999999998865432222221
Q ss_pred -------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 002460 696 -------TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHR 766 (919)
Q Consensus 696 -------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~ 766 (919)
.+..+...+...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++. ...| +...+.
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 233456678899999999998772 2345667788999999999999999999987 4455 567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
.+...+...|+.++|+..++++.+..|+++..+..++.++...|++++|.++++.+....-
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999999999999999999999999999999999999999999999998876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-20 Score=216.41 Aligned_cols=255 Identities=13% Similarity=0.066 Sum_probs=153.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHH
Q 002460 557 DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVD 636 (919)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 636 (919)
+...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44556666655555 6666677766665543 345444333344445667777777766665443 223333444556
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeehHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 637 MYAKCGNIEDAYILFKQMDMRNTVLWNAMLV---GLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
.+.+.|++++|...|++....++..++.... .....|++++|+..|++.++ +.|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6666777777777776665433333332222 22233777777777777766 356655666666667777777777
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 714 YENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
...|+.... +.|+ ...+..+...+...|++++|++.+++. ...| ++..+..+..++...|++++|+..++++++
T Consensus 629 ~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777766654 3443 556666666666777777777766664 3344 445666666667777777777777777777
Q ss_pred hCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 791 LEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 791 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
++|+++.+....+++.....+++.|.+-+++
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 7777666666677777766666666665543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-19 Score=207.88 Aligned_cols=574 Identities=9% Similarity=-0.004 Sum_probs=376.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCC--ceeHHHHHHHHHHcCCchHHHHHH
Q 002460 171 SSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERD--VVLWKVMLRAYAENGFGEEVFHLF 248 (919)
Q Consensus 171 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~~~n~li~~~~~~g~~~~A~~l~ 248 (919)
..|++++|...++.+++.... +..++..|...|.+.|+.++|+..+++..+.| -..|..++..+ +++++|.+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 448888888888888887643 37888999999999999999999999887633 23333333333 9999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHh-hhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhc
Q 002460 249 VDLHRSGLCPDDESVQCVLGVI-SDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSN 327 (919)
Q Consensus 249 ~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 327 (919)
+++.+. .|+..-...++... .... .-.|.+. ++|.+.++ .....
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~-----------------------------~l~y~q~---eqAl~AL~-lr~~~ 176 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQN-----------------------------ALRLAQL---PVARAQLN-DATFA 176 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccc-----------------------------hhhhhhH---HHHHHHHH-HhhhC
Confidence 999883 45433222221110 0000 0113333 44444444 33333
Q ss_pred CCCCchhHHHH-hhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhc-CccCCCCCchhhHHHHHHhhcCCcc
Q 002460 328 VQYDSVTFLVA-LAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKM-GCVCGLRTDQFTLASVLRASSSLPE 405 (919)
Q Consensus 328 ~~pd~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~-g~~~~~~p~~~~~~~~l~~~~~~~~ 405 (919)
..|+..+.... ...+.+.++++.+..++..+.+.+... ..-...|-..|... +
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~------------------------ 231 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQL------------------------ 231 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhC------------------------
Confidence 44445444444 667777777777777777777765433 22233333344431 2
Q ss_pred chhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHhCCChh------
Q 002460 406 GLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF-----DLATWNAMIFGYILSNNSH------ 474 (919)
Q Consensus 406 ~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~------ 474 (919)
. +.+..++. .....|+.++..+.+.|.+.|+.++|.+++++++.- +..+|--++ .+.+...
T Consensus 232 ~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~ 303 (987)
T PRK09782 232 D-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALAN 303 (987)
T ss_pred H-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccc
Confidence 1 23333322 233467888999999999999999999999987653 334444443 3333220
Q ss_pred -----------HHHHHHHHHHHC----------CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHH
Q 002460 475 -----------KALELFSHMHTS----------GERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGI 533 (919)
Q Consensus 475 -----------~A~~~~~~m~~~----------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 533 (919)
-.+++.+..... ...|.......-..+....+...++.+.+..+.+.. +-+....--+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~ 382 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQL 382 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 011111111111 123333321111111122345555666666655542 2344444445
Q ss_pred HHHHHHcCCHHHHHHHhccCCC--C----ChhhHHHHHHHHHHcCC---hhHHHHH------------HH----------
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPA--P----DDVAWTTMISGCVDNGE---EDLALSI------------YH---------- 582 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~~~------------~~---------- 582 (919)
.-...+.|+.++|..+|+..-. + +...-+-++..|.+++. ..+++.+ ..
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 5556788999999999987654 2 23344567788877766 4444333 11
Q ss_pred HHHh-cCCCC---CHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--
Q 002460 583 QMRL-SGVVP---DEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM-- 656 (919)
Q Consensus 583 ~m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 656 (919)
.... .+..| +...+..+..++.. +..++|...+....... |+......+...+...|++++|...|+++..
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 1111 11223 34455555555554 78888999777776654 4444433455556789999999999998763
Q ss_pred CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 002460 657 RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF 735 (919)
Q Consensus 657 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 735 (919)
++...+..+..++.+.|+.++|...|++.++. .|+.. .+..+...+...|++++|...+++..+ +.|+...|..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~ 614 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVA 614 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 44556777888899999999999999999985 45543 344444555677999999999999875 4678889999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 002460 736 LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 813 (919)
+..++.+.|+.++|+..+++. ...| +...+..+..++...|+.++|+..++++++++|+++.++..++.+|...|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999987 5566 45677788888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 002460 814 DVTSARGEMKRK 825 (919)
Q Consensus 814 ~a~~~~~~m~~~ 825 (919)
+|...+++..+.
T Consensus 695 eA~~~l~~Al~l 706 (987)
T PRK09782 695 ATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHhc
Confidence 999999877643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=181.88 Aligned_cols=379 Identities=14% Similarity=0.090 Sum_probs=290.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH-
Q 002460 425 DSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVK- 500 (919)
Q Consensus 425 d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 500 (919)
-..+|..+.+.+-..|++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+-+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 3567888889999999999999999876553 567899999999999999999999988876 4576655444333
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChhHH
Q 002460 501 ACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPD---DVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 501 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 577 (919)
.....|.+.+|...+..+++.. +--..+|+.|...+-..|++..|+.-|++..+-| ...|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 2234678888888888777654 2235567888888888888888888888876533 33677778888888888888
Q ss_pred HHHHHHHHhcCCCCC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC
Q 002460 578 LSIYHQMRLSGVVPD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM 656 (919)
Q Consensus 578 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 656 (919)
+..|.+.... .|+ .+.+..+...|-..|.++.|...+++.++... .-...|+.|..++-..|++.+|...+.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 8888877653 454 34566666667778888888888888777542 2345777788888888888888888887762
Q ss_pred --C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hh
Q 002460 657 --R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VE 731 (919)
Q Consensus 657 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 731 (919)
| -..+.+.|...|...|.+++|..+|....+ +.|.-. .++.|...|-.+|++++|+..+++.. .+.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 2 355777888888888888888888888877 677644 67888888888888888888888775 57787 67
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAA 809 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 809 (919)
.|+.+...|-..|+.++|.+.+.+. .+.|.. ..++.|...++..|++.+|+..++.+++++|+.|.+|-.|+....--
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8888888888888888888888776 566643 46777888888888888888888888888888888888888777777
Q ss_pred CCcch
Q 002460 810 NQWDD 814 (919)
Q Consensus 810 g~~~~ 814 (919)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 77766
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-19 Score=183.61 Aligned_cols=379 Identities=13% Similarity=0.109 Sum_probs=312.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchH
Q 002460 434 DVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD-EITIATAVKACGCLLMLK 509 (919)
Q Consensus 434 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 509 (919)
..+.+..+++....--..... .-..+|..+...+-..|+.++|+.+++.|.+. +|+ ...|..+-.++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCc
Confidence 445555555554332222111 13457899999999999999999999999984 554 457888888999999999
Q ss_pred HHHHHHHHHHHhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 002460 510 QGKQMHAYAMKSGFELDL-CVSSGILDMYVKCGAMVDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 510 ~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
.|.+.+...++.. |+. .+.+.+.......|++++|...+.+..+ | =.+.|+.|...+-.+|+..+|++.|++..
T Consensus 168 ~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 168 LAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred ccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 9999999988764 443 3445566677778999999988876553 4 35689999999999999999999999988
Q ss_pred hcCCCCCH-hHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--CC-eee
Q 002460 586 LSGVVPDE-FTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--RN-TVL 661 (919)
Q Consensus 586 ~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~ 661 (919)
+ +.|+- ..|..+-..+...+.++.|...+.++..... ....++..|.-.|-..|.+|-|+..+++... |+ ..+
T Consensus 246 k--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 246 K--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred c--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 7 45543 4677788888888888888888877766542 2344555688889999999999999999874 33 669
Q ss_pred ehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 002460 662 WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDA 739 (919)
Q Consensus 662 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 739 (919)
||.|..++-..|++.+|...|.+.+. +.|+.. ..+.|..++...|.+++|..+|....+ +.|. ....+.|...
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASI 397 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHH
Confidence 99999999999999999999999998 678765 788999999999999999999998864 5676 7788999999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHH
Q 002460 740 LGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTS 817 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 817 (919)
|-.+|++++|+..+++. .++|+. ..++.+...+...|+++.|...+.+++.++|.-+.++..|+.+|-.+|+..+|+.
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 99999999999999986 788875 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 002460 818 ARGEMKR 824 (919)
Q Consensus 818 ~~~~m~~ 824 (919)
-++....
T Consensus 478 sY~~aLk 484 (966)
T KOG4626|consen 478 SYRTALK 484 (966)
T ss_pred HHHHHHc
Confidence 8876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=189.42 Aligned_cols=290 Identities=14% Similarity=0.116 Sum_probs=206.3
Q ss_pred HHHHcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---HhHHHHHHHHHcccccH
Q 002460 536 MYVKCGAMVDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD---EFTFAILVKASSCLTAL 609 (919)
Q Consensus 536 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 609 (919)
.+...|++++|...|+++.+ | +..+|..+...|...|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556666666666666653 2 334566666666677777777777776665432221 13455556666666777
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCe--------eeehHHHHHHHhcCCHHHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNT--------VLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~ 681 (919)
++|..++..+.+.. +.+...++.++.+|.+.|++++|.+.++.+...+. ..|..+...+.+.|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776666542 23455666777777777777777777777653211 1345567777888999999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 002460 682 FEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE--VEHYSFLVDALGRAGRTKEAGELILSM-P 757 (919)
Q Consensus 682 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~r~g~~~eA~~~~~~m-~ 757 (919)
|+++.+. .|+ ...+..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998874 454 446777778888999999999999988763 343 466788889999999999999999887 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhh---cCCcchHHHHHHHHHhCCCCCCch
Q 002460 758 FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA---ANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 758 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
..|+...+..+...+...|++++|..+++++++..|+++. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5677767778888899999999999999999999997664 4444444432 568999999999999988888885
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-16 Score=185.10 Aligned_cols=389 Identities=12% Similarity=0.019 Sum_probs=270.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcc
Q 002460 429 STALIDVYCRNGSMAEAEYLFENKD--GFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD-EITIATAVKACGCL 505 (919)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 505 (919)
+......|.+.|++++|...|++.. .|+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 3445566777777777777777633 245566777777777777777777777777664 333 34566666677777
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-----------------------------C
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-----------------------------P 556 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----------------------------~ 556 (919)
|++++|...+..+...+-..+.... .++.-+.+......+...++.-+. .
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 7777776665544333211111111 111111111111122222211110 0
Q ss_pred Ch---hhHHHHHHH---HHHcCChhHHHHHHHHHHhcC-CCCC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCc
Q 002460 557 DD---VAWTTMISG---CVDNGEEDLALSIYHQMRLSG-VVPD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDP 628 (919)
Q Consensus 557 ~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 628 (919)
+. ..+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..++... ...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcH
Confidence 00 011111111 122468999999999998865 3343 34566777778889999999999999887642 234
Q ss_pred hhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 002460 629 FVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSAC 704 (919)
Q Consensus 629 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 704 (919)
..+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHH
Confidence 567778899999999999999999876 34577899999999999999999999999998 4675 45677788889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhc
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA-------S-MHRALLGACRVQ 775 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-------~-~~~~ll~~~~~~ 775 (919)
...|++++|...|+..... .+.+...|..+..++...|++++|++.+++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999998763 2334788999999999999999999999885 444421 1 112222223446
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
|++++|...++++++++|++..++..|+.+|...|++++|.+.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-13 Score=153.79 Aligned_cols=688 Identities=15% Similarity=0.110 Sum_probs=356.5
Q ss_pred chhhHHHHHHHhCCChhHHHHHhccCCC------CCc---chH--HHHHHHHHhcC------CCCCCChhHHHHHHHHHH
Q 002460 89 FLTNNLMTMYSRCGSLVYARRLFDKMPD------RDL---ISW--NSILAAYAHSG------EGNAENVTEGFRLFRSLR 151 (919)
Q Consensus 89 ~~~~~li~~y~~~g~~~~A~~~f~~m~~------~~~---~~~--n~li~~~~~~g------~~~~~~~~~A~~~~~~m~ 151 (919)
.+|......|.+.|..++...+++.-.. .|+ ..| +.+-..|++.+ ....+.+..|..+|....
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 3577777788888888888888876541 121 122 22222232222 000112334444554433
Q ss_pred hcCCCCC-cccHHHHHHHhhcCC--ChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCC------
Q 002460 152 ESITFTS-RLTLAPLLKLCLSSG--YVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQE------ 222 (919)
Q Consensus 152 ~~g~~p~-~~t~~~ll~~~~~~g--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------ 222 (919)
.-....+ ..++.... |...| +++.|.+.+..+.+.. ++++...---.......|++..|..+|.....
T Consensus 122 ki~m~~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 2211111 11111111 12223 2467777777777664 23332221112223345888899988887432
Q ss_pred CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcch-hHHHHHHHHHHHhhhcCCCCcchhh
Q 002460 223 RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKR-HEEQVQAYAIKLLLYNNNSNVVLWN 301 (919)
Q Consensus 223 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~n 301 (919)
+|+. -.+-.++.+.|+.+.|+..|.+..+ +.|+.+.-...|.-+...-.. .....-...+...+..+..|.+.-|
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~ 274 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALN 274 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHH
Confidence 2332 1222456688899999999998887 556333222222222221111 1222222223334556667889999
Q ss_pred hHhHhhhhcCChhhHHHHHHHHHhhcCCC--CchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHh
Q 002460 302 KKLSGYLQVGDNHGAIECFVNMIRSNVQY--DSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379 (919)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k 379 (919)
.|.+.|.-.|+++.++.+...+......- -...|--+-.++-..|+++.|.+.+-...+..-..-+..+--|..+|.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 99999999999999999999888654221 1235666778888999999999998766554322212333456677777
Q ss_pred cCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHhcCCCC
Q 002460 380 MGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNG----SMAEAEYLFENKDGF 455 (919)
Q Consensus 380 ~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~ 455 (919)
.|++ +.+..-+..+.+.. +-+..+...|...|+..+ ..+.|..+......+
T Consensus 355 ~~dl------------------------e~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 355 RGDL------------------------EESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred hchH------------------------HHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 6643 22222222222211 123344444444454443 345555555444333
Q ss_pred ---CcchHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHh---CCCC
Q 002460 456 ---DLATWNAMIFGYILSNNSHKALELFSHMH----TSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKS---GFEL 525 (919)
Q Consensus 456 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~ 525 (919)
|...|-.+...|-+. ++..++..|.... ..+-.+.+...+.+-...-..|++..|...+..+... ...+
T Consensus 410 ~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 334454444444433 3333355444332 3343455555555555555666666666666555443 1112
Q ss_pred Ch------hHHHHHHHHHHHcCCHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCCHhH
Q 002460 526 DL------CVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDV-AWTTMISGCVDNGEEDLALSIYHQMRLS-GVVPDEFT 595 (919)
Q Consensus 526 ~~------~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t 595 (919)
|. .+--.|...+-..++.+.|.+.|..+.+ |+-+ .|--+...-...+...+|...+++.... .-.|+..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 21 1112233444444556666666665543 2211 2222221112234455566666555442 12233222
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHc-CCCCCchhhcHHHHHHHH------------cCCHHHHHHHHHhCCC---CCe
Q 002460 596 FAILVKASSCLTALEQGRQIHANLIKL-DCSSDPFVGISLVDMYAK------------CGNIEDAYILFKQMDM---RNT 659 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~------------~g~~~~A~~~~~~~~~---~~~ 659 (919)
.+-..+.....+..|..-+..+.+. ...+|.+..-+|.+.|.. .+..++|+++|.++.. +|.
T Consensus 569 --l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 569 --LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred --HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 2222333444444444433333322 112455555555554432 2345667777776652 355
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
.+=|-+...++..|++.+|..+|.+..+.. .-+..+|..+..+|...|.+-.|++.|+...+++.-.-+.....+|..+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 566667777777777777777777777653 2344566777777777777777777777777766655567777777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 740 LGRAGRTKEAGELILSM-PFEASAS--MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
+-++|.+.+|.+.+... ...|... .++..+ ...+..+.++...+ ..+=.+-...+..+.|.
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~----------v~kkla~s~lr~~k------~t~eev~~a~~~le~a~ 789 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL----------VLKKLAESILRLEK------RTLEEVLEAVKELEEAR 789 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH----------HHHHHHHHHHhccc------ccHHHHHHHHHHHHHHH
Confidence 77777777777665543 3333221 111111 11223333333333 12223444556778888
Q ss_pred HHHHHHHhCCCC
Q 002460 817 SARGEMKRKNVK 828 (919)
Q Consensus 817 ~~~~~m~~~~~~ 828 (919)
++|..|...+-+
T Consensus 790 r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 790 RLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcCCC
Confidence 888888776655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=176.49 Aligned_cols=290 Identities=13% Similarity=0.096 Sum_probs=199.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHc
Q 002460 464 IFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELD---LCVSSGILDMYVKC 540 (919)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~ 540 (919)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566788888888888887753 12333555566666666666666666666655322111 13445556666666
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHH
Q 002460 541 GAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHA 617 (919)
Q Consensus 541 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 617 (919)
|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.++++.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 666666666665543 3444556666666666666666666666555432221100
Q ss_pred HHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 002460 618 NLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD- 693 (919)
Q Consensus 618 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 693 (919)
....+..+...|.+.|++++|...|+++.+ | +...+..+...|.+.|++++|+++|+++.+. .|+
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 247 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEY 247 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Chhh
Confidence 011234467778888888888888888763 2 3557777888999999999999999999875 344
Q ss_pred -hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 002460 694 -SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGA 771 (919)
Q Consensus 694 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~ 771 (919)
..++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+...+..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 356788889999999999999999998764 577777788999999999999999999875 667888888888877
Q ss_pred HHh---cCCHHHHHHHHHHHHh
Q 002460 772 CRV---QGDTETGKWVAEKLMA 790 (919)
Q Consensus 772 ~~~---~g~~~~a~~~~~~~~~ 790 (919)
+.. +|+.+++...++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 654 4577888777777664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-15 Score=178.54 Aligned_cols=352 Identities=11% Similarity=0.010 Sum_probs=274.3
Q ss_pred HhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHH
Q 002460 437 CRNGSMAEAEYLFENKDGF------DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQ 510 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 510 (919)
.+..+++.---.|...++. +..-...++..+.+.|++++|+.+++........+. ..+..+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 3445566555556555442 233455677888999999999999999988654333 344444566667999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 002460 511 GKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLS 587 (919)
Q Consensus 511 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (919)
|...+..+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++++...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 45567788889999999999999999998764 35668888999999999999999999988775
Q ss_pred CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehH
Q 002460 588 GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNA 664 (919)
Q Consensus 588 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 664 (919)
...+.. .+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 433222 2222 334778899999999999887765444445555567889999999999999998763 35667888
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 002460 665 MLVGLAQHGNGEE----TLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVD 738 (919)
Q Consensus 665 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~ 738 (919)
+...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999999999986 8999999998 56754 47888899999999999999999998763 454 667778899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 739 ALGRAGRTKEAGELILSM-PFEASASMHRA-LLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|...++++++.+|++..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999999999999887 45676544443 456788889999999999999999998643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-15 Score=177.30 Aligned_cols=394 Identities=10% Similarity=0.036 Sum_probs=295.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 002460 424 ADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVK 500 (919)
Q Consensus 424 ~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 500 (919)
.+.....-.+......|+.++|.+++.+... .+...+..+...+.+.|++++|..+|++..+.. +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444555667778888999999999988654 234458999999999999999999999988742 233455666777
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChhHH
Q 002460 501 ACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 501 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A 577 (919)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7889999999999999998874 44555 88889999999999999999998864 3 555667788888899999999
Q ss_pred HHHHHHHHhcCCCCCHh------HHHHHHHHH-----cccccH---HHHHHHHHHHHHc-CCCCCchh--hcHH---HHH
Q 002460 578 LSIYHQMRLSGVVPDEF------TFAILVKAS-----SCLTAL---EQGRQIHANLIKL-DCSSDPFV--GISL---VDM 637 (919)
Q Consensus 578 ~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~--~~~l---i~~ 637 (919)
++.+++... .|+.. ....++... ...+.+ ++|.+.++.+.+. ...|+... ..+. +..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998886653 33320 111122222 122233 6778788777754 22333211 1111 224
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---ee-eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHhccC
Q 002460 638 YAKCGNIEDAYILFKQMDMRN---TV-LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-----VTFIGVLSACSYTG 708 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g 708 (919)
+...|++++|+..|+.+...+ +. .--.+...|...|++++|+..|+++.+. .|.. .....+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcc
Confidence 457799999999999998542 11 1122577899999999999999998874 3432 34566677889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 002460 709 LVSEAYENFHLMREKYG----------IEPE---VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACR 773 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 773 (919)
++++|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999976410 1122 234567888999999999999999997 3344 5678999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
..|+.++|+..++++++++|+++..+..++.++...|+|++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-14 Score=156.59 Aligned_cols=281 Identities=13% Similarity=0.016 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHhccCCCCCh------hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--HhHHHHH
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFNDIPAPDD------VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD--EFTFAIL 599 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l 599 (919)
..|..||+.......++.|..+.+++..+|. .-+..+.+.+.+.+....+..++.+|.+.-..-+ ..++-.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5688899999999999999999999886544 3577888889999999999999999987432222 4566677
Q ss_pred HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CC---CeeeehHHHH------
Q 002460 600 VKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MR---NTVLWNAMLV------ 667 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~---~~~~~~~li~------ 667 (919)
++.-+..|..+.-.++++.+...|+.-+ ..++....+.++...|.++++... ++ +...|..++.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~ 647 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDS 647 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhcccc
Confidence 8888888999999999999888887552 334555667777777777766543 11 1112222211
Q ss_pred ------------HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 002460 668 ------------GLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF 735 (919)
Q Consensus 668 ------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 735 (919)
.|.+.|++.+|-++.+. .|+.- -+.- .-|...|.+.--....+.+.+ ..+..-
T Consensus 648 ~qk~mDls~~iq~f~k~g~~~~a~di~et---pG~r~----r~~R-Dr~~de~e~~~lEll~elt~~-------lg~~dR 712 (1088)
T KOG4318|consen 648 PQKTMDLSIPIQKFEKLGSCVDAGDITET---PGVRC----RNGR-DRDTDEGEIVPLELLLELTHE-------LGKNDR 712 (1088)
T ss_pred HHHHHhhcchhHHHHhcccccchhhcccc---Ccccc----cCCC-ccccccCccccHHHHHHHHhH-------hHHHHH
Confidence 12222222222111110 00000 0000 112222222222222222222 122334
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCch---HHHHHHHHhhc
Q 002460 736 LVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQG---DTETGKWVAEKLMALEPFDSSA---YVLLSNIFAAA 809 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~ 809 (919)
|+..|.+.|+++.|..++.+++..|+......|...++++. |+.++...-+++.++.|.++.+ |.--+-+..+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~ 792 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQT 792 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhH
Confidence 78899999999999999999998999999999999888775 6777888888888877665443 33334444444
Q ss_pred CCcchHHHHHHHHHhCCC
Q 002460 810 NQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 810 g~~~~a~~~~~~m~~~~~ 827 (919)
...+.|.+.+.+.++...
T Consensus 793 ~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 793 EQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 445567788888887743
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-15 Score=161.14 Aligned_cols=645 Identities=14% Similarity=0.068 Sum_probs=348.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCC
Q 002460 144 FRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQER 223 (919)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 223 (919)
..++..|...|+.||.+||.+++.-||..|+++.|- ++..|.-..++-...++++++.+....++.+.+. +|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 357788999999999999999999999999999998 9999998888889999999999999999988776 78
Q ss_pred CceeHHHHHHHHHHcCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhhhhcch--------hHHHHHHHHHH
Q 002460 224 DVVLWKVMLRAYAENGFGEEVFHLFVD-LH-------RSGLCPDDESVQCVLGVISDLGKR--------HEEQVQAYAIK 287 (919)
Q Consensus 224 ~~~~~n~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~~~--------~~~~~~~~~~~ 287 (919)
...+|+.|..+|.++|+... ++..++ |. ..|+.--..-|-.-+..|...-.. ..+.++...++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998765 333333 22 233333233333333333332211 12223333333
Q ss_pred HhhhcCCCCcchhhhHhHhhhhcC--ChhhHHHHHHHHHhhcC-CCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCC
Q 002460 288 LLLYNNNSNVVLWNKKLSGYLQVG--DNHGAIECFVNMIRSNV-QYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFY 364 (919)
Q Consensus 288 ~~~~~~~~~~~~~n~li~~~~~~g--~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 364 (919)
.+...++ ..|+.-...+.+.. ......++++ |.+.+. .|++.+|..++.+....|+.+.|+.++..|.+.|+.
T Consensus 161 ll~~~Pv---sa~~~p~~vfLrqnv~~ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 161 LLAKVPV---SAWNAPFQVFLRQNVVDNTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHhhCCc---ccccchHHHHHHHhccCCchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3321111 11111111122221 1122233333 223333 599999999999999999999999999999999998
Q ss_pred ccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 002460 365 SAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAE 444 (919)
Q Consensus 365 ~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 444 (919)
.+..-+-.|+-+ .+....+..+...|...|+.|+..|+...+-.+.+.|....
T Consensus 237 ir~HyFwpLl~g---------------------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---------------------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred cccccchhhhhc---------------------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 888777777655 34667788889999999999999999888777777665433
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCCChh-----HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 002460 445 AEYLFENKDGFDLATWNAMIFGYILSNNSH-----KALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM 519 (919)
Q Consensus 445 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 519 (919)
+....+.--......+..+..+...+.+.+ -.+..+++..-.|+......|..... ....|.-+...++.+.+.
T Consensus 290 ~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 290 GEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred cccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhc
Confidence 332221111112223333333322222211 12222333333343333322222222 222455666666666554
Q ss_pred HhCCC---CChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChh-hHH--H------------HHHHHHHcCChhHHHHHH
Q 002460 520 KSGFE---LDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDV-AWT--T------------MISGCVDNGEEDLALSIY 581 (919)
Q Consensus 520 ~~g~~---~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~--~------------li~~~~~~g~~~~A~~~~ 581 (919)
.--.. .++..+..++.-| |.++..+... .++ . .+.-++..-+...++.-+
T Consensus 369 npt~r~s~~~V~a~~~~lrqy------------Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~l 436 (1088)
T KOG4318|consen 369 NPTLRDSGQNVDAFGALLRQY------------FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQL 436 (1088)
T ss_pred CCccccCcchHHHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHH
Confidence 32211 1222333333333 3333222111 111 0 000011111111111111
Q ss_pred HHHHh----cCCCC-------CHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 582 HQMRL----SGVVP-------DEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 582 ~~m~~----~g~~p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
..... .-..| =...-+.++..|++.-+..+++..-+.....-+. ..|..||+..+...++++|..+
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~ 513 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSF 513 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhc
Confidence 11100 00000 0011233444444444444444333332222211 4566777777777777777777
Q ss_pred HHhCCCCCe------eeehHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 651 FKQMDMRNT------VLWNAMLVGLAQHGNGEETLKLFEDMKAHGV-EPD-SVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 651 ~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
.++...+|. .-+..+.....+++....+..+++++.+.-. .|+ ..++--+++.-...|..+.-.++++-+..
T Consensus 514 ~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs 593 (1088)
T KOG4318|consen 514 VDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS 593 (1088)
T ss_pred hhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 777765532 3456666677777777777777777766321 222 23455566666666776666666665554
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH------------
Q 002460 723 KYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQ--GDTETGKWVAE------------ 786 (919)
Q Consensus 723 ~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~------------ 786 (919)
+|+.-+ .-++....+.++...|.+..+.- ..+|.+.....+.....++ .+++.+.....
T Consensus 594 -lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~ 668 (1088)
T KOG4318|consen 594 -LGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCV 668 (1088)
T ss_pred -hhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhccccc
Confidence 244332 22333444556666655554433 2344444333333333322 12222211111
Q ss_pred ------------------------------HHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHH
Q 002460 787 ------------------------------KLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIF 836 (919)
Q Consensus 787 ------------------------------~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~ 836 (919)
..+++- ++.+....|...|...|+|+.|..+|.+|. +.|. ++-.
T Consensus 669 ~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt-~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~--~~~l 742 (1088)
T KOG4318|consen 669 DAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT-HELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKS--PMKL 742 (1088)
T ss_pred chhhccccCcccccCCCccccccCccccHHHHHHHH-hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcc--hHHH
Confidence 111100 022234457789999999999999998776 4444 3444
Q ss_pred HHHHHHHHHHHhCCcccCC
Q 002460 837 AKVEGLIKRIKEGGYVPDT 855 (919)
Q Consensus 837 ~~l~~l~~~~~~~g~~p~~ 855 (919)
-+|.++.+++.+.--+|.+
T Consensus 743 ~~LAsIlr~~n~evdvPe~ 761 (1088)
T KOG4318|consen 743 FHLASILRRMNEEVDVPEI 761 (1088)
T ss_pred HHHHHHHHhhchhccchhH
Confidence 5555665555444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-14 Score=172.99 Aligned_cols=370 Identities=10% Similarity=0.000 Sum_probs=267.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 002460 425 DSFVSTALIDVYCRNGSMAEAEYLFENK---DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKA 501 (919)
Q Consensus 425 d~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 501 (919)
+...+..+...+.+.|++++|..+|++. ...+...+..++..+...|++++|+..+++..+. .|+...+..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445667777777788888888888873 2335566777888888888888888888888775 3433336666677
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-CCh------hhHHHHHHHH-----H
Q 002460 502 CGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-PDD------VAWTTMISGC-----V 569 (919)
Q Consensus 502 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~------~~~~~li~~~-----~ 569 (919)
+...|+.++|...+..+++.. +.+..+...+...+.+.|..++|.+.++.... |+. .....++..+ .
T Consensus 126 l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 778888888888888888865 34555666788888889999999999987775 211 0111222222 1
Q ss_pred HcCCh---hHHHHHHHHHHhc-CCCCCHh-HHH----HHHHHHcccccHHHHHHHHHHHHHcCCC-CCchhhcHHHHHHH
Q 002460 570 DNGEE---DLALSIYHQMRLS-GVVPDEF-TFA----ILVKASSCLTALEQGRQIHANLIKLDCS-SDPFVGISLVDMYA 639 (919)
Q Consensus 570 ~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~ 639 (919)
..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+.+ |+- ....+...|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 22334 7789999998864 2233321 111 1134455678999999999999887632 322 2223678899
Q ss_pred HcCCHHHHHHHHHhCCCCCe-------eeehHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCh---hHHH
Q 002460 640 KCGNIEDAYILFKQMDMRNT-------VLWNAMLVGLAQHGNGEETLKLFEDMKAHG-----------VEPDS---VTFI 698 (919)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~ 698 (919)
..|++++|+..|+++...+. ..+..+..++...|++++|+++++++.+.. -.|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999998764321 234556668899999999999999998742 11232 2345
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQG 776 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 776 (919)
.+...+...|+.++|+++++++... .+-+...+..+..++...|++++|++.+++. ...|+ ...+..+.......|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 6677888999999999999999763 3345788999999999999999999999987 56675 567777777888899
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHH
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
++++|+..++++++..|+++.+..
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999886543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-15 Score=172.20 Aligned_cols=325 Identities=12% Similarity=0.001 Sum_probs=264.6
Q ss_pred HhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHH
Q 002460 492 EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGC 568 (919)
Q Consensus 492 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 568 (919)
......++..+...|+++.|..++..++.....+ ......++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778888999999999999988876444 44455566777789999999999999864 3556788889999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHH
Q 002460 569 VDNGEEDLALSIYHQMRLSGVVPD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 647 (919)
.+.|++++|++.|++..+. .|+ ...+..+...+...|+.++|...+..+......+....++ + ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-C-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-H-HHHHHcCCHHHH
Confidence 9999999999999999875 444 5567788889999999999999999887765443333322 3 347889999999
Q ss_pred HHHHHhCCCCC----eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH----HHHHHH
Q 002460 648 YILFKQMDMRN----TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSE----AYENFH 718 (919)
Q Consensus 648 ~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 718 (919)
...++.+...+ ...+..+..++...|++++|+..|+++.+. .|+ ...+..+...+...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999876432 233445567889999999999999999984 564 4577788889999999986 799999
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 719 LMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 719 ~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
...+ +.|+ ...+..+..++.+.|++++|...+++. ...| +..++..+..++...|++++|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8875 4554 778999999999999999999999986 4455 45677788888999999999999999999999998
Q ss_pred CchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 796 SSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 796 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
+..+..++.++...|++++|...++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8777778999999999999999998876553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-13 Score=162.49 Aligned_cols=435 Identities=13% Similarity=0.026 Sum_probs=292.6
Q ss_pred hhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHh
Q 002460 300 WNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379 (919)
Q Consensus 300 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k 379 (919)
+......+.+.|++++|++.|++..+ +.|+...|..+-.++.+.|+++.|...+...++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----------------- 190 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----------------- 190 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----------------
Confidence 44557778899999999999998775 45677777777777888888888877776665431
Q ss_pred cCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---C
Q 002460 380 MGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---D 456 (919)
Q Consensus 380 ~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~ 456 (919)
+.+...+..+..+|...|++++|..-|...... +
T Consensus 191 -------------------------------------------p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 191 -------------------------------------------PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred -------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 124556777888888888888888777543221 1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHH
Q 002460 457 LATWNAMIFGYILSNNSHKALELFSHMHTSG--ERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGIL 534 (919)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 534 (919)
......++..+.. ..+........+.. ..|........+..+. ......-+... ...+......++
T Consensus 228 ~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~ 295 (615)
T TIGR00990 228 NEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPRPAGLEDS----NELDEETGNGQL 295 (615)
T ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc----CCcchhhhhcc----cccccccccchH
Confidence 1111122211111 22222233332221 1112111112211110 11111001100 011111111111
Q ss_pred HHH------HHcCCHHHHHHHhccCCC------CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-HhHHHHHHH
Q 002460 535 DMY------VKCGAMVDAQSIFNDIPA------PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD-EFTFAILVK 601 (919)
Q Consensus 535 ~~y------~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 601 (919)
..+ ...+++++|.+.|+...+ .+...|+.+...+...|++++|+..|++.++. .|+ ...|..+..
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~ 373 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 111 234688999999987653 24457888888999999999999999999875 454 457778888
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEET 678 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 678 (919)
.+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999988764 34567888899999999999999999998863 3466788888999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHhhcCCHHHH
Q 002460 679 LKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-E-------HYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 679 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~y~~li~~~~r~g~~~eA 749 (919)
+..|++.++. .|+ ...+..+..++...|++++|.+.|+...+ +.|+. . .++.....+...|++++|
T Consensus 453 ~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 453 MATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999884 565 56888889999999999999999999875 33321 1 122223334457999999
Q ss_pred HHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 750 GELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 750 ~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+++++. ...|+. ..+..+...+...|++++|...+++++++.+.....+ ....|.+|.++....++
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 9999985 556644 5788899999999999999999999999987643322 22345566666544443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-12 Score=143.87 Aligned_cols=407 Identities=13% Similarity=0.047 Sum_probs=270.1
Q ss_pred ccchhhhHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--C--cchHHHHHHHHHhCCChhHHH
Q 002460 404 PEGLHLSKQIHVHAIKNDTVAD--SFVSTALIDVYCRNGSMAEAEYLFENKDGF--D--LATWNAMIFGYILSNNSHKAL 477 (919)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~ 477 (919)
.+..+.+..+...++....... ...|--+..+|-..|++++|...|-+..+. | +..+--+.+.|.+.|+.+.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence 3455566666666655442211 233555677777888888888887654432 2 334455677788888888888
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHhccC----chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC------HHHH
Q 002460 478 ELFSHMHTSGERLD-EITIATAVKACGCLL----MLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGA------MVDA 546 (919)
Q Consensus 478 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~------~~~A 546 (919)
..|+..... .|| ..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...- +..|
T Consensus 363 ~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 888887764 344 345555544554443 4455666666555543 4556666666666654332 2334
Q ss_pred HHHhccC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCCCHh------HHHHHHHHHcccccHHHHHHHH
Q 002460 547 QSIFNDI-PAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLS---GVVPDEF------TFAILVKASSCLTALEQGRQIH 616 (919)
Q Consensus 547 ~~~f~~m-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~a~~~~~~~~~a~~~~ 616 (919)
..++... ...-+...|.+..-+...|.+++|...|.+.... -..+|.. +-..+.......++.+.|.+.+
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4333322 2355667788888888888888888888887654 2334432 2223444455667888888888
Q ss_pred HHHHHcCCCCCchhhcHHHHHHHHc-------CCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 617 ANLIKLDCSSDPFVGISLVDMYAKC-------GNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMK 686 (919)
Q Consensus 617 ~~~~~~~~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 686 (919)
..+++... ..|++|.+. +...+|..++.... ..++..|.-+...|.+...+..|.+-|....
T Consensus 520 k~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 520 KSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHH
Confidence 88877532 256666555 46668888888766 3567788888888888888888888777666
Q ss_pred HcC-CCCChhHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 002460 687 AHG-VEPDSVTFIGVLSACSY------------TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELI 753 (919)
Q Consensus 687 ~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~ 753 (919)
+.- ..+|..+..+|.+.|.. .+..++|+++|.+..+ .-+-+...-+-+.-.++..|++.+|.++|
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHH
Confidence 532 23566666667665543 2345677777777765 22335666777888889999999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 754 LSMP--FEASASMHRALLGACRVQGDTETGKWVAEKLMAL--EPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 754 ~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.+.. ......+|-.+...|..+|++..|.++++..+.. ..+++.....|+.+|...|+|.+|.+......
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8872 2335568889999999999999999999998874 33467778889999999999999988765444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-14 Score=141.10 Aligned_cols=448 Identities=11% Similarity=0.020 Sum_probs=266.0
Q ss_pred cchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhh--cCCChhhH-HHHHHHHHHhCCCCcHh
Q 002460 119 LISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCL--SSGYVWAS-ETVHGYALKIGLVWDEF 195 (919)
Q Consensus 119 ~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a-~~i~~~~~~~g~~~~~~ 195 (919)
+.+=|.++...++ | ...++.-+|++|+..|+..+...-..+++..+ ...++-.+ .+.+-.|.+.| +.+..
T Consensus 116 V~~E~nL~kmIS~-~-----EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~ 188 (625)
T KOG4422|consen 116 VETENNLLKMISS-R-----EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTS 188 (625)
T ss_pred hcchhHHHHHHhh-c-----ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccc
Confidence 4566777776554 5 69999999999999998887776666665443 22222222 22233333333 22222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcc
Q 002460 196 VSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGK 275 (919)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (919)
+| |.|++.+ -+|+ ..-+...+|.+||.|.|+--..+.|.+++++-++...+.+..+|+.+|.+.+-.-
T Consensus 189 sW--------K~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~- 256 (625)
T KOG4422|consen 189 SW--------KSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV- 256 (625)
T ss_pred cc--------ccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-
Confidence 33 4565544 4444 4445667999999999999999999999999999889999999999976543221
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHH----
Q 002460 276 RHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLG---- 351 (919)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a---- 351 (919)
-.+++.+|....+.||..|||+++++.++.|+++.+
T Consensus 257 ----------------------------------------~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa 296 (625)
T KOG4422|consen 257 ----------------------------------------GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA 296 (625)
T ss_pred ----------------------------------------cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH
Confidence 156667777777777777777777777777765543
Q ss_pred HHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCC----CCchh
Q 002460 352 QQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDT----VADSF 427 (919)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~----~~d~~ 427 (919)
.+++.+|.+.|++|...+|..+|..+++.++... .......+|.+.+-...+ +.|..
T Consensus 297 lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k-------------------~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 297 LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK-------------------VASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh-------------------hhHHHHHHHHHhhccCcccCCCCchhH
Confidence 4667777777777777777777777766653210 011111222222222222 22334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHH
Q 002460 428 VSTALIDVYCRNGSMAEAEYLFENKDG--------FD---LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIA 496 (919)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~f~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 496 (919)
-+..-++.|.+..+.+.|.++-.-... ++ ..-|..+....++....+.-+..|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 445556666677777777666433221 11 2235567777888888899999999998888889999999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHH--cCCh
Q 002460 497 TAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVD--NGEE 574 (919)
Q Consensus 497 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~ 574 (919)
.++++....+.++...+++..++..|...+.....-++...++.. +.|+...-.-+-...++ ..-.
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888775444433333333333222 11221110011111110 0001
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC-CCCchhhcHH---HHHHHHcCCHHHHHHH
Q 002460 575 DLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC-SSDPFVGISL---VDMYAKCGNIEDAYIL 650 (919)
Q Consensus 575 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l---i~~y~~~g~~~~A~~~ 650 (919)
+.....-.+|.+....| ..++.++-.+.+.|..++|.+++..+.+.+- .|-....|+| ++.-.+..+...|..+
T Consensus 506 e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 11111222333333333 2334444445566666666666666644332 2333344433 3344455666666666
Q ss_pred HHhCCCCC
Q 002460 651 FKQMDMRN 658 (919)
Q Consensus 651 ~~~~~~~~ 658 (919)
++-|...|
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 66665433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-13 Score=160.07 Aligned_cols=417 Identities=10% Similarity=0.011 Sum_probs=282.1
Q ss_pred cchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH-HHH--HHHHHhCCChhHHHHHHH
Q 002460 405 EGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATW-NAM--IFGYILSNNSHKALELFS 481 (919)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~~~~ 481 (919)
+....+...+.++++....-.+.++ .++..+...|+.++|+..+++...++...+ ..+ ...|...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566777777777766554433444 777777778888888888888776543333 333 346777788888888888
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--C-Ch
Q 002460 482 HMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--P-DD 558 (919)
Q Consensus 482 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~ 558 (919)
++.+.. +-+...+..+...+...++.++|.+.+..+.+.. |+...+..++..+...++..+|.+.++++.+ | +.
T Consensus 127 kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 127 SSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred HHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 887753 2224455566667777788888888877776653 3444444555555555666568888877763 3 45
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH------HHHHHHHH-----ccccc---HHHHHHHHHHHHH-cC
Q 002460 559 VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFT------FAILVKAS-----SCLTA---LEQGRQIHANLIK-LD 623 (919)
Q Consensus 559 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~a~-----~~~~~---~~~a~~~~~~~~~-~~ 623 (919)
..+..+..++.+.|-...|+++..+-... +.|...- ....+..- ....+ .+.|..-++.+.. .+
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 56667777778888888887766542111 1111100 11111100 01112 2334444444433 12
Q ss_pred CCCC-chh-hcH---HHHHHHHcCCHHHHHHHHHhCCCCC----eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCC----
Q 002460 624 CSSD-PFV-GIS---LVDMYAKCGNIEDAYILFKQMDMRN----TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGV---- 690 (919)
Q Consensus 624 ~~~~-~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---- 690 (919)
-.|. ... ..+ .+-++.+.|++.++++.|+.+.... ..+--++..+|...+++++|+.+|+++....-
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2232 111 223 3446678899999999999998432 23556788999999999999999999976431
Q ss_pred CC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 691 EP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYG----------IEPE---VEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 691 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
.| +......|..++...+++++|..+++.+.+... -.|+ ...+..++..+.-.|++.+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12 223357788899999999999999999987311 0122 345566788888999999999999997
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 757 -PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 757 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
...| |..++..+...++..|....|+..++.+..++|++..+...++.++...|+|++|..+.+...+.-
T Consensus 443 ~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 443 SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 3444 788899999999999999999999999999999999999999999999999999998887766553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-12 Score=151.30 Aligned_cols=428 Identities=10% Similarity=0.003 Sum_probs=289.2
Q ss_pred hHhhhhcCChhhHHHHHHHHHhhcCCCCc--hhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcC
Q 002460 304 LSGYLQVGDNHGAIECFVNMIRSNVQYDS--VTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMG 381 (919)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g 381 (919)
+-...+.|++++|++.|++..+.. |+. ..+ .++..+...|+.++|...++..+ .|+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~------------- 100 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNI------------- 100 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCC-------------
Confidence 334578899999999999887653 443 233 66666667788888877776654 22111
Q ss_pred ccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Ccc
Q 002460 382 CVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLA 458 (919)
Q Consensus 382 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~ 458 (919)
+......+...|...|++++|.++|+++.+. |..
T Consensus 101 -------------------------------------------~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 101 -------------------------------------------SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred -------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 1112222344566667777777777775543 344
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 002460 459 TWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYV 538 (919)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 538 (919)
.+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++.. +.+...+..++....
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5566667777777777777777777653 4454455333333333445545777777777764 445666677777777
Q ss_pred HcCCHHHHHHHhccCCC---CChhhH--HHHHHHHH---------HcCC---hhHHHHHHHHHHhc-CCCCCH-hHH---
Q 002460 539 KCGAMVDAQSIFNDIPA---PDDVAW--TTMISGCV---------DNGE---EDLALSIYHQMRLS-GVVPDE-FTF--- 596 (919)
Q Consensus 539 ~~g~~~~A~~~f~~m~~---~~~~~~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~p~~-~t~--- 596 (919)
+.|-...|.++..+-+. +...-| ...+.-.. ..++ .+.|+.-++.+... +-.|.. .-|
T Consensus 215 ~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~ 294 (822)
T PRK14574 215 RNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA 294 (822)
T ss_pred HcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH
Confidence 78877777777766552 111111 00000111 1122 24456666665542 222322 211
Q ss_pred -HHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC---------eeeehHHH
Q 002460 597 -AILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN---------TVLWNAML 666 (919)
Q Consensus 597 -~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---------~~~~~~li 666 (919)
.=-+-++...++..++.+.++.+...+.+....+-.++.++|...+++++|+.+|+++...+ ......|.
T Consensus 295 ~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 295 RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 22355777888999999999999988877677788889999999999999999999875321 22246688
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-----------CC--Chh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGV-----------EP--DSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH 732 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 732 (919)
-+|...+++++|..+++++.+.-. .| |-. .+..++..+.-.|++.+|++.++.+... -+-|...
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l 452 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNL 452 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 899999999999999999987311 13 222 3445566788999999999999999753 3346889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY 799 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 799 (919)
...+.+++...|++.+|++.++.. ...|+ ..+...+..+....+++++|+.+.+++++..|+++.+-
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999999876 45675 45566777778888999999999999999999988543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-12 Score=129.41 Aligned_cols=229 Identities=16% Similarity=0.218 Sum_probs=159.1
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHH---HHhCCCh------------------------hHHHH
Q 002460 57 FSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTM---YSRCGSL------------------------VYARR 109 (919)
Q Consensus 57 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---y~~~g~~------------------------~~A~~ 109 (919)
+++++. .+++.+..+--+|..|...|...+.-+--.|+.. |-...-+ +-|.-
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 444443 5667788888889998888766555444433332 2211111 11222
Q ss_pred HhccCCCCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhC
Q 002460 110 LFDKMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIG 189 (919)
Q Consensus 110 ~f~~m~~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g 189 (919)
+|+..| ++..++.+||+|+|+-- ..+.|.++|.+..+...+.+..+||.+|.+.+ +..++.+..+|+...
T Consensus 199 ~~E~~P-KT~et~s~mI~Gl~K~~-----~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 199 LFETLP-KTDETVSIMIAGLCKFS-----SLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HHhhcC-CCchhHHHHHHHHHHHH-----hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 333322 35567888888888887 78888888888888888888888888887654 334478888888888
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002460 190 LVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGV 269 (919)
Q Consensus 190 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 269 (919)
+.||.+++|++++..++.|+++.|++. |++++.+|++.|+.|.-.+|..+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~i--- 318 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLI--- 318 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHH---
Confidence 888888888888888888888887765 67889999999999987777777
Q ss_pred hhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhh-HHHHH----HHHHhhcCCC----CchhHHHHhh
Q 002460 270 ISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHG-AIECF----VNMIRSNVQY----DSVTFLVALA 340 (919)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~-A~~l~----~~m~~~g~~p----d~~t~~~ll~ 340 (919)
|..+++.++..+ |..++ +.+..+.++| |..-|...++
T Consensus 319 ----------------------------------ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 319 ----------------------------------IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred ----------------------------------HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 455555555432 33333 3333334444 4567788899
Q ss_pred hhcCCCChhHHHHHHHHHHH
Q 002460 341 AVAGTDNLNLGQQIHGTTLK 360 (919)
Q Consensus 341 ~~~~~g~~~~a~~~~~~~~~ 360 (919)
.|....|.+.|.++++.+..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999987654
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-16 Score=135.40 Aligned_cols=63 Identities=59% Similarity=0.823 Sum_probs=57.3
Q ss_pred HHHHHHHhCCcccCCCcccccCCHHHH--------HHhHhhhhHHHHHHHhhccCCCCCcEEEEcC--------------
Q 002460 841 GLIKRIKEGGYVPDTDFVLLDVEEEEK--------ERALYYHSEKLARAYGLISTPPSSVILSNKE-------------- 898 (919)
Q Consensus 841 ~l~~~~~~~g~~p~~~~~~~~~~~~~k--------~~~~~~hse~la~~~~~~~~~~~~~~~~~kn-------------- 898 (919)
++..++...||.|++..++|+++++++ +..+++||||||+|||||++ ||+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~ 95 (116)
T PF14432_consen 22 ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKF 95 (116)
T ss_pred HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHH
Confidence 567778889999999999999988876 67999999999999999999 99998
Q ss_pred --------C--ccCCcccccc
Q 002460 899 --------P--LYANRFHHLR 909 (919)
Q Consensus 899 --------i--rd~~r~h~f~ 909 (919)
| ||++||||||
T Consensus 96 iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 96 ISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHHHCeEEEEeCCCeeeeCC
Confidence 4 9999999997
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=125.46 Aligned_cols=277 Identities=12% Similarity=0.074 Sum_probs=202.8
Q ss_pred HHHHcCCHHHHHHHhccCCCCChhhHHHHH-----HHHHHc-CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccH
Q 002460 536 MYVKCGAMVDAQSIFNDIPAPDDVAWTTMI-----SGCVDN-GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTAL 609 (919)
Q Consensus 536 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 609 (919)
-|.+.|+++.|.++++-..+.|..+-++-. --|.+- .++.+|.+.-+..+... .-+....+.--...-..|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467788888888877766655443322211 112222 24455555544443221 11222222112223346788
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMK 686 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 686 (919)
++|.+.+.+.+...-......|| +.-.+-+.|++++|+..|-.+. ..++...-.+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 89988888888766555555555 4556788999999999998765 4567777788888999999999999998876
Q ss_pred HcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 002460 687 AHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASAS 763 (919)
Q Consensus 687 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~ 763 (919)
. +-| |+....-|...|-+.|+-..|.+++-.- |..-| +.++...|..-|....-+++|...|++. -++|+.+
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6 556 6668888999999999999999876554 44445 6899999999999999999999999997 5799999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 764 MHRALLGACR-VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 764 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
-|..++..|. +.|++++|...++.+....|+|-.....|..++...|.- ++.++-+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 9999999885 559999999999999999999999999999999888863 3444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-10 Score=123.64 Aligned_cols=614 Identities=12% Similarity=0.100 Sum_probs=304.7
Q ss_pred HHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCC-CcccHHHHHHHhhcCC
Q 002460 98 YSRCGSLVYARRLFDKMPD---RDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFT-SRLTLAPLLKLCLSSG 173 (919)
Q Consensus 98 y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 173 (919)
+++ |++++|.+++.++.+ .+...|-+|-..|-+.| +.+++..++-.. ....| |..-|..+-.-....|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-----d~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-----DIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-----cHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcc
Confidence 344 899999999888753 35668888888898888 888887765433 22333 2344555556666777
Q ss_pred ChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCc-eeH-------HHHHHHHHHcCCchHHH
Q 002460 174 YVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDV-VLW-------KVMLRAYAENGFGEEVF 245 (919)
Q Consensus 174 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~-------n~li~~~~~~g~~~~A~ 245 (919)
.+..|.-.+..+++.. +++....---..+|-+.|+...|..-|.++-+.+. +.| --++..|...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777777765 33444444456667777777777766666544222 111 11233444455555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHh
Q 002460 246 HLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIR 325 (919)
Q Consensus 246 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 325 (919)
+.++.....+ .+.-+...+|.++..|.+...++.|......+..
T Consensus 301 ~~le~~~s~~------------------------------------~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 301 KALEGALSKE------------------------------------KDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHhhc------------------------------------cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5555544311 1223344567778888888888888888877776
Q ss_pred hcCCCCchhH----------------------H----HHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHh
Q 002460 326 SNVQYDSVTF----------------------L----VALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379 (919)
Q Consensus 326 ~g~~pd~~t~----------------------~----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k 379 (919)
...++|..-+ . -+.-++......+....+...+.+..+.
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~--------------- 409 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW--------------- 409 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC---------------
Confidence 4333433322 0 1111122233333333333333333311
Q ss_pred cCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----
Q 002460 380 MGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---- 455 (919)
Q Consensus 380 ~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---- 455 (919)
+.-++..|.-+.++|...|++.+|..+|..+...
T Consensus 410 ------------------------------------------~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 410 ------------------------------------------VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ------------------------------------------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 1122333444444455555555555555443321
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHH--------HHHhCCCCC
Q 002460 456 DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCLLMLKQGKQMHAY--------AMKSGFELD 526 (919)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~--------~~~~g~~~~ 526 (919)
+...|--+..+|...|.+++|++.|.+.... .|+.. .-.++-..+...|+.++|.+.+.. ....+..|+
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 3344555555555555555555555554432 22221 112222233344455555544444 122234444
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHhccCC--------------------------CCChhhHHHHHHHHHHcCChhHHHH-
Q 002460 527 LCVSSGILDMYVKCGAMVDAQSIFNDIP--------------------------APDDVAWTTMISGCVDNGEEDLALS- 579 (919)
Q Consensus 527 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~--------------------------~~~~~~~~~li~~~~~~g~~~~A~~- 579 (919)
....-...+.|.+.|+.++=..+-..|. .......-.++.+-.+.++.....+
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 605 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKA 605 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhc
Confidence 4444445555555555444222111111 0111111122222222222111110
Q ss_pred -----HHHHHHhcCCCCCH--hHHHHHHHHHcccccHHHHHHHHHHHHHcCC--CCCc---hhhcHHHHHHHHcCCHHHH
Q 002460 580 -----IYHQMRLSGVVPDE--FTFAILVKASSCLTALEQGRQIHANLIKLDC--SSDP---FVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 580 -----~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~li~~y~~~g~~~~A 647 (919)
.+.--...|+.-+. .-+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|
T Consensus 606 l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a 685 (895)
T KOG2076|consen 606 LSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDA 685 (895)
T ss_pred ccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 01111111121111 1233344555666666666666555544321 1111 1223344445556667777
Q ss_pred HHHHHhCCCC-----C---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH--HHHHhccCCHHHHHHHH
Q 002460 648 YILFKQMDMR-----N---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV--LSACSYTGLVSEAYENF 717 (919)
Q Consensus 648 ~~~~~~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~ 717 (919)
...+..|... + ...||...+.+.+.|+-.--.+.+..... ..|+......+ ..-....+.+..|...+
T Consensus 686 ~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 686 FSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHH
Confidence 6666666532 2 33566655655555554443444433332 22322111111 12233455666666655
Q ss_pred HHhHHhcCCCCChhHHH-HHHHHHh----------hcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHH
Q 002460 718 HLMREKYGIEPEVEHYS-FLVDALG----------RAGRTKEAGELILSMP-F-EA--SASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 718 ~~m~~~~~~~p~~~~y~-~li~~~~----------r~g~~~eA~~~~~~m~-~-~p--~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
-... ...|+...++ ||.-++. |.-..-++..++.+.. . .+ ...++-.+..+|..-|=+..|.
T Consensus 764 ~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 764 MRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 4443 3445533333 2222221 1122334455554431 1 12 3456778889999999999999
Q ss_pred HHHHHHHhhCCCCCc------------hHHHHHHHHhhcCCcchHHHHHH
Q 002460 783 WVAEKLMALEPFDSS------------AYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 783 ~~~~~~~~~~p~~~~------------~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.++++++++.|.+-. +-..|.-+|..+|+.+-|..+.+
T Consensus 841 ~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 841 SYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 999999998764322 34467789999999998888774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-08 Score=106.74 Aligned_cols=427 Identities=10% Similarity=0.015 Sum_probs=229.4
Q ss_pred chhhhHhHhhhhcCChhhHHHHHHH----HHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHH
Q 002460 298 VLWNKKLSGYLQVGDNHGAIECFVN----MIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSL 373 (919)
Q Consensus 298 ~~~n~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 373 (919)
..|-+-...--.+|+.+...+++++ +...|+..+..-|..=-.+|-..|..-.++.|...++..|++...
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed------ 514 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED------ 514 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch------
Confidence 3343334444456777777776654 445666666666655555555555555555555554444432210
Q ss_pred HHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 002460 374 INMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKD 453 (919)
Q Consensus 374 i~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~ 453 (919)
-..+|..-.+.|.+.+.++-|+.+|....
T Consensus 515 ---------------------------------------------------~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 515 ---------------------------------------------------RKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred ---------------------------------------------------hHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 12344444455555556666666665433
Q ss_pred C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHH
Q 002460 454 G---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVS 530 (919)
Q Consensus 454 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 530 (919)
+ .+...|...+..=-..|..++-..+|++....- +-...-+....+..-..|++..|+.++..+.+.. +.+..+|
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiw 621 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIW 621 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHH
Confidence 2 244556666655555666666666676666532 1122222222333333455555555555555543 2244455
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc
Q 002460 531 SGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA 608 (919)
Q Consensus 531 ~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 608 (919)
-+-+..-.....++.|+.+|.+.. .+....|.--+.-.--.+..++|++++++.++. -|+..
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~-------------- 685 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH-------------- 685 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH--------------
Confidence 555555555555555555555443 244444444444444445555555555555442 23322
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHH
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDM 685 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 685 (919)
-.|-.+...|-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+.-+|..++++.
T Consensus 686 --------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 686 --------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred --------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2333344555555555555555554432 2 2334555555555555666666666665
Q ss_pred HHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 002460 686 KAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMH 765 (919)
Q Consensus 686 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~ 765 (919)
.-.+ +-|...|...+..-.+.|..+.|..+..+..++ .+-+...|.--|.+..+.++-..+.+.+++-. .|+.+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVl 820 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVL 820 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhH
Confidence 5432 124445556666666666666666665555552 33345555556666666666555555555543 344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 766 RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 766 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
-+....+....+++.|..-++++...+|++..+|..+-..+...|.-++-.+++++...
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 45555566666777777777777777777777777777777777776666666665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-09 Score=112.58 Aligned_cols=365 Identities=12% Similarity=0.069 Sum_probs=268.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCCHhHHHHHHHHHhccC
Q 002460 434 DVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSH----MHTSGERLDEITIATAVKACGCLL 506 (919)
Q Consensus 434 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~ 506 (919)
-+|++..-++.|.++++...+ .+...|.+-...=-.+|+.+....++++ +...|+..+...+..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344555566777777765433 4667777766666677877777777655 345678888888877777888888
Q ss_pred chHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 507 MLKQGKQMHAYAMKSGFELD--LCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 507 ~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.+-....+..-.+..|++.. ..+|+.-...+.+.+.++-|+.+|....+ .+...|...+..--.+|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888888887776543 45677777888888888888888876653 46667877777777788888888888
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC--CCCe
Q 002460 582 HQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--MRNT 659 (919)
Q Consensus 582 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~ 659 (919)
++.... ++-..+.+.......-..|++..|+.++..+.+.... +..++-+-+..-....++++|..+|.+.. .+..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 888775 3333444555555556678888888888888876643 66777778888888888999999988776 4567
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLV 737 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 737 (919)
..|.--+....-.++.++|++++++.++ .-|+.. .|..+...+-+.++++.|.+.|..=.+ ..|+ +..|-.|.
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLa 726 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLA 726 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHH
Confidence 7787777777778888999999988887 467765 677777788888888888887765533 3454 66788888
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 002460 738 DALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNI 805 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 805 (919)
++=.+.|.+-.|..++++. ..+.+...|-..+..-.++|+.+.|+...-++++--|++...|.--+.+
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 8888888888999988886 3344778888888888888999999888888887766544433333333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-14 Score=147.01 Aligned_cols=254 Identities=17% Similarity=0.154 Sum_probs=113.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCC
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILV-KASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGN 643 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 643 (919)
...+.+.|++++|++++++-.....+|+...|-.++ ..+-..++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344555566666666664433332234443333322 2333455666666666666554432 44455556666 68889
Q ss_pred HHHHHHHHHhCC--CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 644 IEDAYILFKQMD--MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSVTFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 644 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
+++|.+++...- .++...|..++..+.+.|+++++.++++++.+.. .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887764 3567788889999999999999999999987643 2345667788888899999999999999999
Q ss_pred HHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 721 REKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMP--FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 721 ~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
.+. .|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+.+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 864 564 7788899999999999999888887651 2446678999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
....++.++...|+.++|..++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999986543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-09 Score=120.78 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=25.6
Q ss_pred CChhHHHHHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHH
Q 002460 208 GKIREAKFLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLF 248 (919)
Q Consensus 208 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~ 248 (919)
|++++|.+++.++.+ ++...|-+|...|-+.|+.+++...+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 666666666666554 34455666666666666666665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-12 Score=135.31 Aligned_cols=271 Identities=14% Similarity=0.069 Sum_probs=125.2
Q ss_pred CHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHcccccHHHHHHHH
Q 002460 542 AMVDAQSIFNDIPA--PDDV-AWTTMISGCVDNGEEDLALSIYHQMRLSGV--VPDEFTFAILVKASSCLTALEQGRQIH 616 (919)
Q Consensus 542 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~ 616 (919)
+..+|...|..++. +|+. ...-+..+|...+++++|.++|+...+... .-+...|.++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 34566666666543 3333 223345566677777777777777665321 11334555544322110 011111
Q ss_pred -HHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002460 617 -ANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP 692 (919)
Q Consensus 617 -~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 692 (919)
+.+++. -+..+.+|.++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 111111 1233445555555555555555555555554421 334444444444555555555555555443 333
Q ss_pred Ch-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 002460 693 DS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRAL 768 (919)
Q Consensus 693 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~l 768 (919)
+. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.|+|+++++++ ..+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 22 244444445555555555555555443 23442 334444444555555555555555554 2222 22111122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
...+...++.++|...+|++.++-|+++.+|.+++.+|-+.|+.+.|..-+.-|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 222333345555555555555555555555555555555555555555444333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-10 Score=117.49 Aligned_cols=382 Identities=15% Similarity=0.102 Sum_probs=247.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcc
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKDG--FD-LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCL 505 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~ 505 (919)
-...+-|.+.|++++|++.+....+ || ++-|.....+|...|++++..+.-.+.++ +.|+-+ .+..--++.-.+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 3445567888999999999987543 55 67788888899999999888776666655 344422 222333344455
Q ss_pred CchHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CCh-----------------------
Q 002460 506 LMLKQGKQMHAYA-MKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDD----------------------- 558 (919)
Q Consensus 506 ~~~~~a~~~~~~~-~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~----------------------- 558 (919)
|+++++..-..-. +-.|+... ....+++--.+.--..++.+-+.+-.. |..
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~--s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNA--SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccc--hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 5555543221111 11111100 000111111111111222222221000 111
Q ss_pred hhHHHHHHHHHH--cC---ChhHHHHHHHHHHhcC-CCC-----CHhHHHHHHHH-------HcccccHHHHHHHHHHHH
Q 002460 559 VAWTTMISGCVD--NG---EEDLALSIYHQMRLSG-VVP-----DEFTFAILVKA-------SSCLTALEQGRQIHANLI 620 (919)
Q Consensus 559 ~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g-~~p-----~~~t~~~ll~a-------~~~~~~~~~a~~~~~~~~ 620 (919)
.+.-.+..++.. .+ .+.+|.+.+.+-.... ..+ |... ..+..+ .--.|+.-.+.+-++.++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 112222222211 11 2334444433321110 011 1111 111122 223467778888888888
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hH
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-VT 696 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 696 (919)
+....++. .|--+.-+|....+.++-...|+... ..|+.+|..-...+.-.+++++|..=|++.+. +.|+. ..
T Consensus 354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYA 430 (606)
T ss_pred hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHH
Confidence 86644333 25557778999999999999999876 34778888888888889999999999999998 67854 47
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS---------ASMHR 766 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~---------~~~~~ 766 (919)
|..+-.+..+.+.++++...|++.+.+ ++-.++.|+.....+..++++++|.+.++.. .++|+ +.+..
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 888888888999999999999999985 5556899999999999999999999999885 44444 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
+++-.-++ +|+..|+.++.++++++|....+|..|+.+-...|+.++|+++|++-
T Consensus 509 a~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 509 ALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555444 89999999999999999999999999999999999999999999754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-10 Score=113.49 Aligned_cols=356 Identities=15% Similarity=0.106 Sum_probs=223.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHH--HHH
Q 002460 422 TVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIA--TAV 499 (919)
Q Consensus 422 ~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll 499 (919)
...|...+-...-.+-+.|....|+..|.....+-+..|.+-+....-.-+.+.+.. .. .|...|...+. .+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHH
Confidence 344444444444455667778888888877655444444443322211112211111 11 11111111111 123
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 002460 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALS 579 (919)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 579 (919)
.++......+++.+-.......|++.+...-+-...++- .+.++++|+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y-------------------------------~~rDfD~a~s 283 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY-------------------------------NQRDFDQAES 283 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh-------------------------------hhhhHHHHHH
Confidence 344444455555555555555555444443333333333 3445566666
Q ss_pred HHHHHHhcCC-C-CCHhHHHHHHHHHcccccHHH-HHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC
Q 002460 580 IYHQMRLSGV-V-PDEFTFAILVKASSCLTALEQ-GRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM 656 (919)
Q Consensus 580 ~~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 656 (919)
+|+++.+... . -|..||+.++-.-.....+.- |..+. .+ . +--+.+...+.+-|+-.++.++|...|++..+
T Consensus 284 ~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 284 VFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred HHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 6666655421 1 144566655543222111111 11111 11 1 12334666677888888889999999998774
Q ss_pred ---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Chh
Q 002460 657 ---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVE 731 (919)
Q Consensus 657 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 731 (919)
....+|+.|..-|...++...|++-+++.++ +.| |...|..|..+|.-.++..=|+-+|++..+ ++| |..
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsR 433 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSR 433 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchH
Confidence 3456899999999999999999999999988 566 777899999999999999999999988864 556 588
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCCchHHHH
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSMP--FEASASMHRALLGACRVQGDTETGKWVAEKLMA-------LEPFDSSAYVLL 802 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l 802 (919)
.|.+|.+.|.+.++++||++.+.+.- .+-+...+..|...+..-++.++|...+++.++ .+|+-..+-.-|
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 89999999999999999999998872 233457888888999999999999999998887 344444455668
Q ss_pred HHHHhhcCCcchHHHHHHHHH
Q 002460 803 SNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 803 ~~~y~~~g~~~~a~~~~~~m~ 823 (919)
++-+-+.++|++|..+-....
T Consensus 514 A~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhhcchHHHHHHHHHHh
Confidence 888999999999987665444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=125.82 Aligned_cols=244 Identities=9% Similarity=0.051 Sum_probs=148.5
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHhHHH--HHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHH
Q 002460 569 VDNGEEDLALSIYHQMRLSGVVPDEFTFA--ILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIED 646 (919)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 646 (919)
.+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|.+.++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4556666666666665542 33332211 22334555566666666666555544 2334455556666666666666
Q ss_pred HHHHHHhCCCCCee-----------eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHH
Q 002460 647 AYILFKQMDMRNTV-----------LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYE 715 (919)
Q Consensus 647 A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 715 (919)
|.+++..+.+.... +|..++.......+.+...++++++.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666532111 2223333333344455555566655432 23355567777778888888888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 716 NFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 716 ~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
.+++..+. .|+.... ++......|+.+++.+.+++. +..| |+..+.++...|...+++++|+..++++++.+|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88777542 3444222 222223457888888888776 4445 445667777788888888888888888888888
Q ss_pred CCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 794 FDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 794 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
+ ...|..|+.++.+.|+.++|..++++-
T Consensus 360 ~-~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 D-AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 455778888888888888888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-11 Score=126.77 Aligned_cols=246 Identities=12% Similarity=0.075 Sum_probs=196.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC--CCCchhhcHHHHHHHHcCCHHH-HH
Q 002460 572 GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC--SSDPFVGISLVDMYAKCGNIED-AY 648 (919)
Q Consensus 572 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~ 648 (919)
-+.++|+..|.+.... +.-.......+..+|-..+++++++.+|+.+.+... ..+..+|.+.+-.+-+.=.+.- |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 333335566778899999999999999999977532 3466777777654433222221 22
Q ss_pred HHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002460 649 ILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIE 727 (919)
Q Consensus 649 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 727 (919)
.+.+ +.+..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 412 ~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 3333 2345688999999999999999999999999998 678 56689988888888999999999998764 3
Q ss_pred CChhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 728 PEVEHYSF---LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 728 p~~~~y~~---li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.++.||++ |.-.|.++++++.|+-.|+++ .+.| +.++...+...+.+.|+.++|...+++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 56667765 556788999999999999997 6777 456677777788888999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHhCC
Q 002460 803 SNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 803 ~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
+.++...+++++|...++++++.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-10 Score=123.07 Aligned_cols=254 Identities=14% Similarity=-0.016 Sum_probs=158.3
Q ss_pred hccCchHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHH
Q 002460 503 GCLLMLKQGKQMHAYAMKSGFELDLC--VSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 577 (919)
...|+.+.+.+.+..+.+. .|+.. ........+...|+.+.|...++++.+ .+......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555443 23322 222335566777777777777776653 2455666777777777888888
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC-
Q 002460 578 LSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM- 656 (919)
Q Consensus 578 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 656 (919)
++++.++.+.+..++. .+..+-. ..|..++....+..+.+...++++..+.
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 8888777776544222 1110000 0111122223333445556666666652
Q ss_pred --CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002460 657 --RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYS 734 (919)
Q Consensus 657 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 734 (919)
.++..+..+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...++ .+-|...+.
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 35666777777788888888888888877763 444421 1233344557888888888777653 233466677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 002460 735 FLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALE 792 (919)
Q Consensus 735 ~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 792 (919)
++..++.+.|++++|.+.|+++ ...|+...+..|..++...|+.++|..++++.+.+-
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888776 567888777778888888888888888888887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-09 Score=119.09 Aligned_cols=288 Identities=14% Similarity=0.053 Sum_probs=125.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 002460 469 LSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQ 547 (919)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 547 (919)
..|+++.|.+.+.+..+. .|++. .+...-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 23322 222333344455666666666655544321221223333344455555555555
Q ss_pred HHhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC
Q 002460 548 SIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC 624 (919)
Q Consensus 548 ~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 624 (919)
..++.+.+ | +...+..+...|.+.|++++|.+++.++.+.++.+.. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 55554432 2 3334444455555555555555555555544322111 1100000
Q ss_pred CCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH---H
Q 002460 625 SSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTF---I 698 (919)
Q Consensus 625 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 698 (919)
..+..+++.-......+...+.++..+. .+...+-.++..+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0000011111111223333444444442 35566666666777777777777777777663 4444321 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhc
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILS--M-PFEASASMHRALLGACRVQ 775 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~ 775 (919)
.........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|++ . ...|+..++..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111112223444444444444433211111112333444444444444444444442 1 2344444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 002460 776 GDTETGKWVAEKL 788 (919)
Q Consensus 776 g~~~~a~~~~~~~ 788 (919)
|+.++|..++++.
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-09 Score=110.78 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=89.1
Q ss_pred hHHHHH---HHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHH-HHhhcCCChhhHHHHHHHHHHhCCCCcH--
Q 002460 121 SWNSIL---AAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLL-KLCLSSGYVWASETVHGYALKIGLVWDE-- 194 (919)
Q Consensus 121 ~~n~li---~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~i~~~~~~~g~~~~~-- 194 (919)
+|+.+. .-|.-+. ...+|+..|+-.++....||...+-.-+ +.+.+.+.+..|...+...+..-...+.
T Consensus 200 tfsvl~nlaqqy~~nd-----m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ 274 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEAND-----MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDM 274 (840)
T ss_pred hHHHHHHHHHHhhhhH-----HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhh
Confidence 454443 4455555 7888888888888877777765443222 3445666777888888777665322222
Q ss_pred --hHHHHHHHHHHhcCChhHHHHHHhcCCC--CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhh
Q 002460 195 --FVSGALVNIYSKFGKIREAKFLFDGMQE--RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDES 262 (919)
Q Consensus 195 --~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (919)
.+.|.+--.+.+.|.+++|..-|+...+ ||..+--.||-++..-|+.++..+.|..|......||.-.
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 2345555566788899999988887654 6666533344455557888888888888887666666443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-07 Score=97.62 Aligned_cols=428 Identities=12% Similarity=0.059 Sum_probs=288.1
Q ss_pred CCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHH
Q 002460 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLI 374 (919)
Q Consensus 295 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 374 (919)
+++..|--.+..-.++.++..|..++++....-...|..-|- .+..=-..|++..|.++|+...+
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqiferW~~-------------- 169 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFERWME-------------- 169 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHHHHc--------------
Confidence 455667777888888889999999998876543333332221 11222234555555555555432
Q ss_pred HHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc--C
Q 002460 375 NMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFEN--K 452 (919)
Q Consensus 375 ~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~--~ 452 (919)
..||...|.+.|+.=.+-..++.|+.++++ +
T Consensus 170 -----------------------------------------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 170 -----------------------------------------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred -----------------------------------------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 456777777777777777888888888887 4
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh----ccCchHHHHHHHHHHHHhCCCCC-h
Q 002460 453 DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACG----CLLMLKQGKQMHAYAMKSGFELD-L 527 (919)
Q Consensus 453 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~ 527 (919)
..|++.+|--...-=-++|+..-|..+|....+. -.|...-..++.+++ ....++.|.-++..++..-.... .
T Consensus 203 ~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 203 VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 5678888888877778888888888888877653 223444444455554 45677888888888887632221 3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHh--------ccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh--
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIF--------NDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF-- 594 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f--------~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 594 (919)
..+......=-+.|+.....+.. +.+.. -|-.+|--.+..--..|+.+...++|++.+.. ++|-..
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 45555555555566644333322 22222 24557777777777889999999999999875 566332
Q ss_pred -----HHHHH---HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHH----HcCCHHHHHHHHHhCC--CCCee
Q 002460 595 -----TFAIL---VKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYA----KCGNIEDAYILFKQMD--MRNTV 660 (919)
Q Consensus 595 -----t~~~l---l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~ 660 (919)
.|.-+ +-.=....+++.+.++++..++ -++...+++.-+=-+|+ ++-++..|.+++.... -|...
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence 11111 1111345788889999988888 45556667766655555 6788889999988776 35666
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
++...|..-.+.++++....++++.++- .| |..++......-...|+.|.|..+|+...+...+......|...|+-
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 7777888888889999999999999884 56 66788877777778899999999999887753444445567777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh
Q 002460 740 LGRAGRTKEAGELILSM-PFEASASMHRALLGACR-----VQG-----------DTETGKWVAEKLMA 790 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~ 790 (919)
=...|.++.|..+++++ ...+-..+|-++..--. ..+ ++..|..+++.+..
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 77889999999988886 33445557777665433 223 45667777776664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-08 Score=103.78 Aligned_cols=254 Identities=11% Similarity=0.055 Sum_probs=192.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC--CCCchhhcHHHHHHHHcC
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC--SSDPFVGISLVDMYAKCG 642 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g 642 (919)
..+|....+.+++++-.......|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555667778887777777777665555544445555667788899999988888632 125556655543322222
Q ss_pred CHHH-HHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 643 NIED-AYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 643 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
++.- |..++ .+.+-.+.|...+.+-|.-.++.++|...|++.++ +.|... .|+.+..-|....+...|++-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 22222 23334566778888888889999999999999988 566544 6777888899999999999999988
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 721 REKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 721 ~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
.+ +.| |-..|--|.++|.-.+...-|+-.|++. ..+| |..+|.+|...|.+-++.++|+..+++++.....+..
T Consensus 391 vd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred Hh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 75 455 6778889999999999999999999987 5667 6789999999999999999999999999998877889
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+|+.|+++|...++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988876554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-07 Score=101.36 Aligned_cols=471 Identities=12% Similarity=0.107 Sum_probs=298.7
Q ss_pred hhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhh---cCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccC
Q 002460 308 LQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAV---AGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVC 384 (919)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~ 384 (919)
-+.++.++++.-+..-...+..-|..++..+..++ ...++.++. ++-..+...+.|...++.+.+..
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL-------- 307 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH--------
Confidence 34566778888887777777777777777766654 355666666 44444444444433333222211
Q ss_pred CCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHH
Q 002460 385 GLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWN 461 (919)
Q Consensus 385 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~ 461 (919)
...+.++....+..|..+|..|.-++.++|+++.+.+.|++...- ....|+
T Consensus 308 --------------------------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~ 361 (799)
T KOG4162|consen 308 --------------------------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWY 361 (799)
T ss_pred --------------------------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH
Confidence 112223333445678999999999999999999999999985432 456799
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHH-HHH-hccCchHHHHHHHHHHHHh--CC--CCChhHHHHHHH
Q 002460 462 AMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAV-KAC-GCLLMLKQGKQMHAYAMKS--GF--ELDLCVSSGILD 535 (919)
Q Consensus 462 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~-~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~ 535 (919)
.+-..|.-.|.-..|+.++++-....-.|+..+.-.+. ..| .+.+.+++|...-..++.. +. ......+..+.-
T Consensus 362 ~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi 441 (799)
T KOG4162|consen 362 QLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGI 441 (799)
T ss_pred HHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999998876654345444433333 333 3446777777766666652 21 122344444444
Q ss_pred HHHHcC-----------CHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHH
Q 002460 536 MYVKCG-----------AMVDAQSIFNDIP-----APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAIL 599 (919)
Q Consensus 536 ~y~~~g-----------~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 599 (919)
+|...- ...++.+.+++.. +|+++.|-++ -|+..++.+.|++..++..+.+-.-+...+..+
T Consensus 442 ~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 442 AYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 454321 1234455555442 3444444443 466778899999999999888767788888888
Q ss_pred HHHHcccccHHHHHHHHHHHHH-cCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC-----------------------
Q 002460 600 VKASSCLTALEQGRQIHANLIK-LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD----------------------- 655 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------------------- 655 (919)
.-.++..+++.+|+.+.+.... .|...... ..-++.-..-++.++|......+.
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLM--DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 8888888999999998876644 23211100 011122222444444443322221
Q ss_pred --------CCCee-eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------HHHHHHHHHhccCCHHHHHHHHH
Q 002460 656 --------MRNTV-LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--------TFIGVLSACSYTGLVSEAYENFH 718 (919)
Q Consensus 656 --------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~ 718 (919)
..|.. ++..+ .+... -+...+..-.. |...-+.|+.. .+......+...+..++|...+.
T Consensus 598 ~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred ccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 00111 11111 11111 11111100000 22222233221 34455567888899999998887
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCC
Q 002460 719 LMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKW--VAEKLMALEP 793 (919)
Q Consensus 719 ~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p 793 (919)
+.. ++.| ....|......+...|+++||.+.|... ...|+. .+..++...+...|+...|.. ++..+++++|
T Consensus 675 Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 675 EAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 775 4445 4677888888899999999999988775 667754 577788888888898888888 9999999999
Q ss_pred CCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 794 FDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 794 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.++.+|..|+.++.+.|+.++|.+.|....+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999999999999976543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=120.28 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=192.3
Q ss_pred HhcCCHHHHHHHHhcCCCC--C-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCchHHH
Q 002460 437 CRNGSMAEAEYLFENKDGF--D-LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI--TIATAVKACGCLLMLKQG 511 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 511 (919)
...|+++.|++.+.+..+. + ...+-....+..+.|++++|.+.+.+..+.. |+.. .-..........|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4679999999999876553 2 2234444567788899999999999987643 5543 333346677789999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCC---ChhhHHHH----HHHHHHcCChhHHHHHHHHH
Q 002460 512 KQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAP---DDVAWTTM----ISGCVDNGEEDLALSIYHQM 584 (919)
Q Consensus 512 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m 584 (919)
...++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+. +...+..+ ..++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 556778899999999999999999999887743 22222211 11112222222222233333
Q ss_pred HhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--CCeee-
Q 002460 585 RLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--RNTVL- 661 (919)
Q Consensus 585 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~- 661 (919)
.+.. |+ ..+.++..+..++..+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 3221 10 0112455556677777777778887777777764 33221
Q ss_pred --ehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 002460 662 --WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV---TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFL 736 (919)
Q Consensus 662 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 736 (919)
+..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... +...|+.+.+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 122222233456778888999888874 67555 455778889999999999999995333 2567998888899
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 002460 737 VDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m 756 (919)
..++.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998863
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-07 Score=101.35 Aligned_cols=187 Identities=18% Similarity=0.288 Sum_probs=136.4
Q ss_pred CHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 643 NIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 643 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+++.|.+++-.+++....+
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444444433333 3457999999999999999999887432 2566899999999999999999999887766
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 723 KYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 723 ~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
+ .-+|.++ +.||-+|++.+++.|-++++. -|+..-......-|...|.++-|+-.+. +...|..|
T Consensus 1162 k-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKL 1226 (1666)
T ss_pred h-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHH
Confidence 5 6677665 468889999999999998884 5788888888999999999998888876 45567778
Q ss_pred HHHHhhcCCcchHHHHHHHHHhCCCCCCch------HH-------------HHHHHHHHHHHHHhCCcc
Q 002460 803 SNIFAAANQWDDVTSARGEMKRKNVKKDPA------DL-------------IFAKVEGLIKRIKEGGYV 852 (919)
Q Consensus 803 ~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~------~~-------------i~~~l~~l~~~~~~~g~~ 852 (919)
+..+...|.+..|...-++......-|..+ +| ..++|+++....+..||-
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcH
Confidence 888888888887776543332222222222 11 135677777777777764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=126.85 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred cCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHHH
Q 002460 505 LLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYH 582 (919)
Q Consensus 505 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 582 (919)
.++.+.|.+.++.+...+. .++..+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444332 234445555555 56677777776665543 2455566677777777777777777777
Q ss_pred HHHhcC-CCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCC
Q 002460 583 QMRLSG-VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRN 658 (919)
Q Consensus 583 ~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 658 (919)
+..... .+++...|......+.+.|+.++|...++.+++... .+..+.+.++..+...|+.+++.++++... ..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 765432 234555566666666777777777777777766542 245556667777777777777666665543 356
Q ss_pred eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 659 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
...|..+..+|...|+.++|+..|++..+. .| |..+...+..++...|+.++|.++......
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 677777777788888888888888877763 44 555667777777778888887777666543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=113.75 Aligned_cols=196 Identities=12% Similarity=0.037 Sum_probs=160.1
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSAC 704 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 704 (919)
...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566688889999999999999987753 345678888889999999999999999998853 22455677788889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
...|++++|.+.++...+..........+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764222223566777888999999999999999886 3344 4567888888889999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 783 WVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 783 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
..++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888999999999999999998877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-07 Score=96.32 Aligned_cols=397 Identities=13% Similarity=0.080 Sum_probs=295.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 002460 427 FVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACG 503 (919)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 503 (919)
..|-....-=...+++..|+.+|++... +++..|--.+..=.++.+...|..++++....=.+.|..-| ..+..=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHH
Confidence 3343333344455678889999988654 57778988999999999999999999998774333343333 2333445
Q ss_pred ccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 504 CLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 504 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.+|++..|++++..-.. ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=-++|....|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67899999999987765 48999999999999999999999999999865 699999988888888899999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHH----cccccHHHHHHHHHHHHHcCCCCC-chhhcHHHHHHHHcCCHHHHHHHH-----
Q 002460 582 HQMRLSGVVPDEFTFAILVKAS----SCLTALEQGRQIHANLIKLDCSSD-PFVGISLVDMYAKCGNIEDAYILF----- 651 (919)
Q Consensus 582 ~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~----- 651 (919)
...++. -.|...-..++.++ .+...++.|.-+++..++.-.... ...|..+...=-+-|+....+...
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 987763 12233333333333 456678889999998887643221 344554544444556654433332
Q ss_pred ---HhCCCC---CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------HHHHHHHHH---hccCCHHHHHH
Q 002460 652 ---KQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-------TFIGVLSAC---SYTGLVSEAYE 715 (919)
Q Consensus 652 ---~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~ 715 (919)
+.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. +|.-+=.+| ....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222233 5567777888888889999999999999975 677321 222222222 35688999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 716 NFHLMREKYGIEP-EVEHYSFLVDAL----GRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 716 ~~~~m~~~~~~~p-~~~~y~~li~~~----~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
+|+...+ +.| ...++.-+=-+| .|+.++..|.+++-.. +.-|...++...+..-.+.++++....++++.+
T Consensus 388 vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999876 445 455555444333 5899999999999876 788999999999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 790 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
+..|+|..++...+.+-...|+++.|..+++...+....--|.
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999999999999999999888776544454
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-11 Score=90.79 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=48.0
Q ss_pred CCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcC
Q 002460 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAG 344 (919)
Q Consensus 295 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 344 (919)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999975
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-08 Score=102.07 Aligned_cols=273 Identities=13% Similarity=0.018 Sum_probs=191.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcC
Q 002460 563 TMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCG 642 (919)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 642 (919)
.-..-+-..+++++..+++++..+. .++....+..=|.++...|+-.+-..+-..+.+. .+....+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344445556666666666665553 1233333333333444445444433333333332 2445566777777777889
Q ss_pred CHHHHHHHHHhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHH
Q 002460 643 NIEDAYILFKQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 643 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
+..+|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|...+..+-|.++|..
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998776433 458999999999999999999999888773 222333444455568889999999999988
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 720 MREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMP--------FEA-SASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 720 m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
.. ++.|+ +..++-+.-+.-..+.+.+|...|+... ..+ -..+|+.|..+|++.+.+++|+..+++++
T Consensus 406 A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 406 AL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 74 67774 6666666666677888999998887751 112 34678899999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchH-HHHHHHHHHHHH
Q 002460 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPAD-LIFAKVEGLIKR 845 (919)
Q Consensus 790 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~-~i~~~l~~l~~~ 845 (919)
.+.|+|+.+|..++-+|...|+.+.|++.+.+.. -..|.. -+-+.|....+.
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL----~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL----ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH----hcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997543 333443 344444444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-11 Score=87.37 Aligned_cols=50 Identities=34% Similarity=0.677 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcc
Q 002460 556 PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSC 605 (919)
Q Consensus 556 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 605 (919)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-05 Score=85.95 Aligned_cols=433 Identities=15% Similarity=0.167 Sum_probs=246.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhcCCC-----CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002460 195 FVSGALVNIYSKFGKIREAKFLFDGMQE-----RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGV 269 (919)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 269 (919)
.+|-.-+....+.|++...+..|++... .....|...|.-.-..|-++-++.++++..+ +.|.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~---------- 170 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE---------- 170 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH----------
Confidence 4555666666777888888888876443 2334588778777778888888888888776 3332
Q ss_pred hhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChh
Q 002460 270 ISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLN 349 (919)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~ 349 (919)
.-+-.|..+++.+++++|.+.+........ - . ++.|
T Consensus 171 -----------------------------~~eeyie~L~~~d~~~eaa~~la~vln~d~-----f----~---sk~g--- 206 (835)
T KOG2047|consen 171 -----------------------------AREEYIEYLAKSDRLDEAAQRLATVLNQDE-----F----V---SKKG--- 206 (835)
T ss_pred -----------------------------HHHHHHHHHHhccchHHHHHHHHHhcCchh-----h----h---hhcc---
Confidence 123346667777777777777766642210 0 0 1111
Q ss_pred HHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHH
Q 002460 350 LGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVS 429 (919)
Q Consensus 350 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~ 429 (919)
.++-..|.-+-+..++.-+. . .--....+...++..-...=-..|
T Consensus 207 --------------kSn~qlw~elcdlis~~p~~-------~--------------~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 207 --------------KSNHQLWLELCDLISQNPDK-------V--------------QSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred --------------cchhhHHHHHHHHHHhCcch-------h--------------cccCHHHHHHhhcccCcHHHHHHH
Confidence 11111122222222111100 0 000011111111111111123568
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--CcchHHHHHHHHHh----------------CCC------hhHHHHHHHHHHH
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKDGF--DLATWNAMIFGYIL----------------SNN------SHKALELFSHMHT 485 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~ 485 (919)
++|.+.|.+.|.++.|..+|++.... .+.-++.+.++|++ .|+ ++-.+.-|+.+..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999874332 22223333333322 121 1223334444433
Q ss_pred CCC--------CCCH---hHHHHHHHHHhccCchHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 002460 486 SGE--------RLDE---ITIATAVKACGCLLMLKQGKQMHAYAMKSG-----FELDLCVSSGILDMYVKCGAMVDAQSI 549 (919)
Q Consensus 486 ~g~--------~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~~~~A~~~ 549 (919)
.+. +.|+ .++..-+. ...|+..+-...+..+++.- ...-...|..+...|-..|+++.|+.+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 220 1111 11211111 12345556666677766541 112234678889999999999999999
Q ss_pred hccCCCCC-------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcC----------CCC-------CHhHHHHHHHHHcc
Q 002460 550 FNDIPAPD-------DVAWTTMISGCVDNGEEDLALSIYHQMRLSG----------VVP-------DEFTFAILVKASSC 605 (919)
Q Consensus 550 f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~t~~~ll~a~~~ 605 (919)
|++..+-+ ..+|-.....=.++.+++.|+++.+.....- -.| +...|...+..-..
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 99887522 2356666666677888999999888764321 111 11223334444455
Q ss_pred cccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC----CCCe-eeehHHHHHHHhc---CCHHH
Q 002460 606 LTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD----MRNT-VLWNAMLVGLAQH---GNGEE 677 (919)
Q Consensus 606 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~~---g~~~~ 677 (919)
.|-++..+.+++.+++..+.....+.| ..-.+-...-++++.+++++-. -|++ ..||..+.-+.+. ...+.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677888888888888877643333333 3334455667899999999865 2443 3788877666542 35899
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHH--HhccCCHHHHHHHHHHhHH
Q 002460 678 TLKLFEDMKAHGVEPDSVTFIGVLSA--CSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 678 A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~ 722 (919)
|..+|++.++ |.+|...-+.-|+.+ =-.-|....|+.++++...
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999998 677766533333332 3345888888888887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-08 Score=96.49 Aligned_cols=267 Identities=14% Similarity=0.094 Sum_probs=146.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHHcCCHHHH
Q 002460 470 SNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSG-FELD--LCVSSGILDMYVKCGAMVDA 546 (919)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~~~g~~~~A 546 (919)
+.++++|+++|-+|.+.. +-...+-.++-+.+.+.|.++.|..+|.-+.++- +..+ ..+...|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 478899999999998732 1122233456677888899999999998887642 2111 23445567778888999999
Q ss_pred HHHhccCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcC
Q 002460 547 QSIFNDIPAPDD---VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLD 623 (919)
Q Consensus 547 ~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 623 (919)
+.+|..+.+... ....-|+..|.+..++++|+++-+++.+.|-.+..+-.. ..|
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---qfy-------------------- 183 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---QFY-------------------- 183 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH---HHH--------------------
Confidence 999988876333 355567888888889999998888888766555443211 111
Q ss_pred CCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 002460 624 CSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV 700 (919)
Q Consensus 624 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 700 (919)
.-|...+....+++.|..++.+....| +.+--.+...+...|+++.|.+.++...+.+..--+.+...|
T Consensus 184 --------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 184 --------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred --------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 113333333444444444444443221 222222333444555555555555555553211122244445
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 002460 701 LSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELI-LSMPFEASASMHRALLGA 771 (919)
Q Consensus 701 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~~ 771 (919)
..+|.+.|+.+++..++..+.+. .+....-..|.+......-.++|...+ +.+.-+|+...+..|+..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 55555555555555555554432 233333333333333333333343332 223445555555555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-07 Score=92.61 Aligned_cols=402 Identities=12% Similarity=0.023 Sum_probs=228.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHH-HHHhCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 002460 425 DSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIF-GYILSN-NSHKALELFSHMHTSGERLDEITIATAVKAC 502 (919)
Q Consensus 425 d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 502 (919)
|...-...+..|-..++-+.|.....+.+..-...-+.|+- -+.+.| +-.++.--+.+....-+ ..+. .|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~-~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ-VIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH-HHHHH
Confidence 44555567778888888899999998888764444444443 333333 22122222222211100 0000 00000
Q ss_pred hccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc--CCHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChh
Q 002460 503 GCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKC--GAMVDAQSIFNDIP-----APDDVAWTTMISGCVDNGEED 575 (919)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~ 575 (919)
.+.+ +..+..--..|-....++.......-+.+|+.+ ++-..|...|-... .-|+....++...+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 000000000111112233333333334444333 33333333322221 246667777788888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhH----HHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHH
Q 002460 576 LALSIYHQMRLSGVVPDEFT----FAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILF 651 (919)
Q Consensus 576 ~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 651 (919)
+|+..|++.+. +.|+.++ |..+ +.+.|+.+.-..+...+....- .+...+-.-........+++.|+.+-
T Consensus 250 ~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 250 QAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred HHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 88888887665 3444432 3333 3456667666666655544321 11111111122233456777888777
Q ss_pred HhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002460 652 KQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIE 727 (919)
Q Consensus 652 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 727 (919)
++...-| +..+-.-...+.+.|+.++|.-.|+..+. +.| +-..|..|+.+|...|.+.||.-.-+.... -+.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhh
Confidence 7666443 34444444677888899999999988877 566 556899999999999999988877666554 233
Q ss_pred CChhHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 002460 728 PEVEHYSFLV-DALG-RAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803 (919)
Q Consensus 728 p~~~~y~~li-~~~~-r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 803 (919)
.+..+...+. ..+. ..---++|..++++. ..+|+. .....+...|...|..+.+...+++.+...| |...++.|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHH
Confidence 4455555442 3332 223347788888875 677765 3556666778888889999999999998888 567888899
Q ss_pred HHHhhcCCcchHHHHHHHHHhCCCCCCch-HHHHHHHHHHHHHHH
Q 002460 804 NIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAKVEGLIKRIK 847 (919)
Q Consensus 804 ~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-~~i~~~l~~l~~~~~ 847 (919)
.+......+++|.+.|..... .+|. +...+-|+++.+.++
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr----~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR----QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh----cCccchHHHHHHHHHHhccC
Confidence 999999999999988865543 3444 334445555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.1e-09 Score=113.87 Aligned_cols=230 Identities=15% Similarity=0.122 Sum_probs=167.5
Q ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHc-----CC-CCCch-hhcHHHHHHHHcCCHHHHHHHHHhCCC-------C--
Q 002460 594 FTFAILVKASSCLTALEQGRQIHANLIKL-----DC-SSDPF-VGISLVDMYAKCGNIEDAYILFKQMDM-------R-- 657 (919)
Q Consensus 594 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 657 (919)
.|...+...|...|+++.|..+++..++. |. .|.+. +.+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777788888888888877766553 21 12222 233467788889999998888887751 1
Q ss_pred --CeeeehHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCC-Chh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--C
Q 002460 658 --NTVLWNAMLVGLAQHGNGEETLKLFEDMKA-----HGVEP-DSV-TFIGVLSACSYTGLVSEAYENFHLMREKYG--I 726 (919)
Q Consensus 658 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 726 (919)
-..+++.|..+|.+.|++++|..++++..+ .|..+ +.. -++.+...|+..+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677788889999999888888777654 22222 222 466777789999999999999988776544 2
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 002460 727 EPE----VEHYSFLVDALGRAGRTKEAGELILSM-------PF--EAS-ASMHRALLGACRVQGDTETGKWVAEKLMAL- 791 (919)
Q Consensus 727 ~p~----~~~y~~li~~~~r~g~~~eA~~~~~~m-------~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 791 (919)
.++ ..+|+.|..+|...|+++||++++++. .. .+. ....+.|..+|...++.+.|...++....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 468999999999999999999999876 11 222 346778888898888989898888877654
Q ss_pred ---CCCCC---chHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 792 ---EPFDS---SAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 792 ---~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.|+.| .+|..|+.+|.+.|++++|.++-+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44443 468899999999999999998876543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-06 Score=91.34 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=79.5
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 541 GAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 541 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4455555554444433 46888888888888888888777442 355678888888888888888888887777
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHH
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
+..-+|.+. +.||-+|++.+++.+-++++. .||......+..-|...|.++.|.-+
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 776665544 357777777777666554431 23333333344444444444444333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-06 Score=89.71 Aligned_cols=309 Identities=13% Similarity=0.109 Sum_probs=190.3
Q ss_pred HHHHHcCCHHHHHHHhccCCCCChh--hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHH
Q 002460 535 DMYVKCGAMVDAQSIFNDIPAPDDV--AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQG 612 (919)
Q Consensus 535 ~~y~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 612 (919)
.+-.....+.+|..+++.+...++. -|..+...|+..|+++.|.++|.+. + .+.-.|..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHH
Confidence 3344556677777777777655443 3566667777778888887777652 1 234456667777777777
Q ss_pred HHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002460 613 RQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP 692 (919)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 692 (919)
.++-.+. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..+..+++.++- .|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 6654332 34445556666666677788888888888888777764 477888889888888877653 45
Q ss_pred Ch--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCHHHHH
Q 002460 693 DS--VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFE----ASASMHR 766 (919)
Q Consensus 693 ~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~----p~~~~~~ 766 (919)
|. .|...+..-+...|++..|...|-+..+ |..-+++|-.++.+++|..+-+.-+-. .-...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 53 3666777778889999999988766543 667788899999999999888764211 1123343
Q ss_pred HH------HHHHHhcCCHHHHHHHH------HHHHh-----hCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC-CC
Q 002460 767 AL------LGACRVQGDTETGKWVA------EKLMA-----LEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN-VK 828 (919)
Q Consensus 767 ~l------l~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~-~~ 828 (919)
-- .....+||-++.|...+ +-+++ ....-+..+..++-.+...|++++|.+.+-+..+.+ ..
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 22 22344566666555432 12222 123346678888889999999999987664433221 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCcccCCCc--ccccCCHHHHHHhHhhhhHH
Q 002460 829 KDPADLIFAKVEGLIKRIKEGGYVPDTDF--VLLDVEEEEKERALYYHSEK 877 (919)
Q Consensus 829 ~~~~~~i~~~l~~l~~~~~~~g~~p~~~~--~~~~~~~~~k~~~~~~hse~ 877 (919)
..=.. +.-.+...+....|-.|.... ..||-+=+.-+++---|-|-
T Consensus 1029 itwcq---avpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~ 1076 (1636)
T KOG3616|consen 1029 ITWCQ---AVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED 1076 (1636)
T ss_pred chhhh---cccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh
Confidence 10000 000112223335676776544 34665544445554445443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-05 Score=85.41 Aligned_cols=306 Identities=14% Similarity=0.134 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc-------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 002460 427 FVSTALIDVYCRNGSMAEAEYLFENKDGFDLA-------TWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAV 499 (919)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 499 (919)
..|..+.+.|-..|+++.|+.+|++..+.+-. +|-.-...=.+..+++.|+.+.+.... .|.... +
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~ 460 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L 460 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h
Confidence 45677788888888888888888876554322 344444444555666777776655543 222211 1
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHH---HHHHcCChhH
Q 002460 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMIS---GCVDNGEEDL 576 (919)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~ 576 (919)
.. ...+..-++ . +..+..+|...++.--..|-++....+++.+.+--+.|=..+++ -+-.+.-+++
T Consensus 461 ~~-yd~~~pvQ~-r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 461 EY-YDNSEPVQA-R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hh-hcCCCcHHH-H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 11 111111111 0 11234556666666667777777788887776532222222221 1234555677
Q ss_pred HHHHHHHHHhcCCCCCHh-HHHHHHHHH---cccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHH
Q 002460 577 ALSIYHQMRLSGVVPDEF-TFAILVKAS---SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFK 652 (919)
Q Consensus 577 A~~~~~~m~~~g~~p~~~-t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 652 (919)
+.++|++-+..=-.|+.. .|++-|.-+ -....++.|+.+|++.++ |++|.-. ..+--.|++.
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~l----------- 595 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAKL----------- 595 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHH-----------
Confidence 777776644432234443 233222222 223356777777777776 5443322 1122233321
Q ss_pred hCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-
Q 002460 653 QMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE- 729 (919)
Q Consensus 653 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 729 (919)
--.+|-...|++++++.... +++... .|+..|.--...=-+.....+|++.++. -|+
T Consensus 596 ----------------EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~ 655 (835)
T KOG2047|consen 596 ----------------EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDS 655 (835)
T ss_pred ----------------HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChH
Confidence 11345555666666664432 444322 4555544222111122334445555442 233
Q ss_pred --hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 002460 730 --VEHYSFLVDALGRAGRTKEAGELILSMP--FEA--SASMHRALLGACRVQGDTETGKWV 784 (919)
Q Consensus 730 --~~~y~~li~~~~r~g~~~eA~~~~~~m~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~ 784 (919)
.+..--..++=.+-|..+.|..++.-.. ..| +...|.+.-.--.+|||-+.-++.
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 2222334455566788888888776541 233 566788877777888884443333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-07 Score=97.71 Aligned_cols=351 Identities=14% Similarity=0.072 Sum_probs=218.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 002460 460 WNAMIFGYILSNNSHKALELFSHMHTSGERLD-EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELD-LCVSSGILDMY 537 (919)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y 537 (919)
+-....-|.++|.+++|++.|.+..+ ..|| +..|...-.+|...|+++++.+.-...++.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34455678899999999999999988 5788 6777777778889999999988877776543 33 33455555677
Q ss_pred HHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChh--------HHHHHHHHHHh-c--CCCCCHhHHHHHHHHHccc
Q 002460 538 VKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEED--------LALSIYHQMRL-S--GVVPDEFTFAILVKASSCL 606 (919)
Q Consensus 538 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~-~--g~~p~~~t~~~ll~a~~~~ 606 (919)
-..|++++|+. .+|-.++..+|..+.-.- .|....++-.+ . .+-|+.....+.+..+...
T Consensus 194 E~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 77888887753 122223333332222211 22222222222 1 2345555444444433210
Q ss_pred -----------c--cHHHHHHHH------------HHHHHc----CCCCC-----------chhhcHHHHHHHHcCCHHH
Q 002460 607 -----------T--ALEQGRQIH------------ANLIKL----DCSSD-----------PFVGISLVDMYAKCGNIED 646 (919)
Q Consensus 607 -----------~--~~~~a~~~~------------~~~~~~----~~~~~-----------~~~~~~li~~y~~~g~~~~ 646 (919)
+ .+.++.+.+ +.+.+. -..++ ..........+.-+|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0 111111111 111110 00111 1111111223445788888
Q ss_pred HHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 647 AYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 647 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
|..-|+.... | +...|--+...|....+.++-...|.+... +.| |+.+|..=.....-.+++++|..=|++.+
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai- 421 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI- 421 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 8888887653 2 233366677788888888888888888877 555 55677666666666778888888888876
Q ss_pred hcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 002460 723 KYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPF----- 794 (919)
Q Consensus 723 ~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----- 794 (919)
.+.|. +..|--+.-++-|.+++++++..|++. .++.-+.+++-.......+++++.|.+.++++++++|.
T Consensus 422 --~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 422 --SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred --hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 45664 667777777778888999999888876 34334567777777888888999999999999999988
Q ss_pred -CCchHHHHHHHHh-hcCCcchHHHHHHHHHhCCCCCCch
Q 002460 795 -DSSAYVLLSNIFA-AANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 795 -~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
++.+++.-+-+.. -.+++..|.++.+ +.++.+|.
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~----KA~e~Dpk 535 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLR----KAIELDPK 535 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHH----HHHccCch
Confidence 6666665443322 2366666766664 44455665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-08 Score=101.10 Aligned_cols=266 Identities=15% Similarity=0.130 Sum_probs=198.1
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHH
Q 002460 570 DNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYI 649 (919)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 649 (919)
..|++.+|+++..+-.+.+-.| ...|..-..+--+.|+.+.+..+..++.+..-.++..++-+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3578888888888866665443 234555566777788888888888888877666777777778888888888888877
Q ss_pred HHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHhccCCHHHHHHHHHH
Q 002460 650 LFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-------VTFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 650 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
-.++.. ..++........+|.+.|++.....+..+|.+.|+--|+ .++..++.-+.+.+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 766554 567778888889999999999999999999988866553 3688888888877777777777777
Q ss_pred hHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 720 MREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 720 m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
... ..+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. . ..+-.|.+-++.+.=+..+++.+...|++|..
T Consensus 255 ~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 255 QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 766 35556667777888888999999999888775 3233333 2 22334667788888888888888889999988
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Q 002460 799 YVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIK 844 (919)
Q Consensus 799 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~ 844 (919)
+..|+..|.+.+.|.+|.+.++...+ ..|+.+-+..+.....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~ 372 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHH
Confidence 99999999999999999988874443 3344445555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=96.48 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=88.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 002460 470 SNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSI 549 (919)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 549 (919)
.|++.+|..+..+-.+.+-.| ...|.....+.-..|+.+.+.+...++.+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477778887777766655333 2345555566667778888888777777664456666777777778888888888776
Q ss_pred hccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH
Q 002460 550 FNDIP---APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDE 593 (919)
Q Consensus 550 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 593 (919)
.++.. ..+.........+|.+.|++.+...++.+|.+.|.--|.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 66543 457777788888888888888888888888888765444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=116.82 Aligned_cols=242 Identities=16% Similarity=0.084 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHc---------ccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCC
Q 002460 574 EDLALSIYHQMRLSGVVPDEF-TFAILVKASS---------CLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGN 643 (919)
Q Consensus 574 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 643 (919)
.++|+++|++.++. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777777653 44433 3333222221 2344677777777777654 2345566667777888888
Q ss_pred HHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHH
Q 002460 644 IEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 644 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
+++|...|++... | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888887653 3 355677788888888888888888888887 456543 333344455667888888888887
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 002460 720 MREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEASAS-MHRALLGACRVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 720 m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 796 (919)
.... ..|+ ...+..+..+|...|++++|...++++ +..|+.. .++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 2343 555677778888888888888888776 4455443 3444444555555 477777777766444334
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3444477788888887777666 555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-06 Score=86.54 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=187.2
Q ss_pred CHHHHHHHHhcCCC--CCcchHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC--chHHHHHHH
Q 002460 441 SMAEAEYLFENKDG--FDLATWNAMI-FGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLL--MLKQGKQMH 515 (919)
Q Consensus 441 ~~~~A~~~f~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~ 515 (919)
.+++|..++.+... |.....|.-+ -+|.+...++-+.++++-..+. -||+ |+..-+.+|..-. .-..+.+-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHH
Confidence 46788888877654 3344555433 4677777778777777776653 3443 4444444543221 111122222
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHc-----CCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 002460 516 AYAMKSGFELDLCVSSGILDMYVKC-----GAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV 590 (919)
Q Consensus 516 ~~~~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 590 (919)
..+.+.+-..- ..+.-.++. ..-+.|.+++-.+.+.=+..--.|+--|.++++.++|..+.+++.- ..
T Consensus 243 k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--tt 315 (557)
T KOG3785|consen 243 KELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TT 315 (557)
T ss_pred HHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CC
Confidence 22222211110 011122222 1224444444333221111222344446777777777777665421 22
Q ss_pred CCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeehHH
Q 002460 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM-----RNTVLWNAM 665 (919)
Q Consensus 591 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 665 (919)
|-......+..+ ++..-......+.-|.+.|+-+.. ..+.--.+|
T Consensus 316 P~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 316 PYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 222222222111 111111111223344444443331 123344566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 666 LVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
.+.+.-..++++.+..++....- +.-|.+.-..+..|.+..|.+.+|.++|-.+... .++.+..-...|...|.+.|+
T Consensus 366 As~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCC
Confidence 66777777788888888777664 3333333345778888889999999988776432 233333333456778889999
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 746 TKEAGELILSMPFEASASMH-RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+-|.+++-++....+..+. ....+-|.+.+.+=-|-.++..+-.++| +|..|. |+...-..++..+-.
T Consensus 444 P~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~ 513 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAGLFRQLAN 513 (557)
T ss_pred chHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHHHHHHHHc
Confidence 99999999888644444443 4444569999998888888988888888 455543 555556677777766
Q ss_pred CCCCCCchHHHHH
Q 002460 825 KNVKKDPADLIFA 837 (919)
Q Consensus 825 ~~~~~~~~~~i~~ 837 (919)
....+.|+..+.+
T Consensus 514 ~~~~~~p~~~~rE 526 (557)
T KOG3785|consen 514 HKTDPIPISQMRE 526 (557)
T ss_pred CCCCCCchhHHHH
Confidence 6666667644433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-08 Score=104.39 Aligned_cols=211 Identities=14% Similarity=0.081 Sum_probs=151.0
Q ss_pred ccHHHHHHHHHHHHHcC-CCCC--chhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHH
Q 002460 607 TALEQGRQIHANLIKLD-CSSD--PFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLK 680 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 680 (919)
+..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++... .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666665665432 2222 34566788889999999999999998763 457789999999999999999999
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 002460 681 LFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--P 757 (919)
Q Consensus 681 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~ 757 (919)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 57854 57888888899999999999999998763 454332222223345678999999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 758 FEASASMHRALLGACRVQGDTETGKWVAEKLM-------ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 758 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..|+. |.. .......|+...+. .++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332 321 12223345544332 333333 5667777899999999999999999999998877654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-06 Score=93.25 Aligned_cols=285 Identities=11% Similarity=0.024 Sum_probs=158.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 002460 457 LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDM 536 (919)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 536 (919)
+..--.-.+-+...+++.+.+++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+..+.+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444556667788888888888887653 444444555555666666666655555555554 35567778888888
Q ss_pred HHHcCCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHH
Q 002460 537 YVKCGAMVDAQSIFNDIPAPD---DVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 537 y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 613 (919)
|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+---|.+.+.++.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998765433 347888888888889999998888765442 1101111122223355566666666
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
+++..+.... +.|+.+.+-+.-+....+.+.+|..+|+....+ .+....+ ..--
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~~w 454 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KIFW 454 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-ccch
Confidence 6665555433 344555555555555555555555555544310 0000000 0001
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 002460 694 SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGAC 772 (919)
Q Consensus 694 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~ 772 (919)
..+++.|..+|.+.++.++|+..|+.... -.+-+..+|..+.-.|...|+++.|.+.|.+. .++|+..+-..+|+.+
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 23444555555555555555555555443 12224455555555555555555555555443 4455544444444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-08 Score=98.54 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHH
Q 002460 558 DVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDM 637 (919)
Q Consensus 558 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 637 (919)
...+..+...|...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4466777777888888888888888776542 1223344444444444455555555444444332
Q ss_pred HHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHH
Q 002460 638 YAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 716 (919)
..+...+..+...+...|++++|++.|++..+....| +...+..+..++...|++++|...
T Consensus 96 ------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 96 ------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1223344455555566666666666666665532222 223445555566667777777777
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 717 FHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PF-EASASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 717 ~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
++..... .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+..|
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7666542 1223456666677777777777777776664 22 22445555566666667777777777666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-06 Score=91.40 Aligned_cols=306 Identities=13% Similarity=0.035 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhcc
Q 002460 474 HKALELFSHMHTSG-ERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFND 552 (919)
Q Consensus 474 ~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 552 (919)
.++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+.++.+-..+...|..|.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 56777777776643 345555554443 345567888888888888876677778888888888888888888887765
Q ss_pred CCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHH--cCCC
Q 002460 553 IPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLS--GVVPDEFTFAILVKASSCLTALEQGRQIHANLIK--LDCS 625 (919)
Q Consensus 553 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~ 625 (919)
..+ .|-+....-|..-..-++.++|+.....+..- ...|-..+.. .| ...+....+.- ....
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g---~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EG---KLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hh---hhhhhhcccccCccccc
Confidence 432 11111111122223356667776666655431 0000000000 00 00111111100 0011
Q ss_pred CCchhhcHHHHHHHH---cCCHHHHHHHHHhCCCCC------eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hh
Q 002460 626 SDPFVGISLVDMYAK---CGNIEDAYILFKQMDMRN------TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SV 695 (919)
Q Consensus 626 ~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 695 (919)
..+.++.-+...... .-..+.....+...+.|+ ...|......+.+.++.++|...+.+... +.|- ..
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~ 685 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSAS 685 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHH
Confidence 111222212111111 111111111111112222 12466667788889999999988888776 4553 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGE--LILSM-PFEA-SASMHRALLG 770 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~--~~~~m-~~~p-~~~~~~~ll~ 770 (919)
.|......+...|..++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ ...| +...|..|..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 56666667788899999999998775 57786 7889999999999997777766 77776 6666 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
...+.|+.+.|-..+.-++++++.+|.
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999988774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-07 Score=89.37 Aligned_cols=303 Identities=13% Similarity=0.120 Sum_probs=187.2
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-CChh------hHHHHHHHHHHcCChhHHH
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-PDDV------AWTTMISGCVDNGEEDLAL 578 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~------~~~~li~~~~~~g~~~~A~ 578 (919)
.+.++|...|-.|.+.. +....+--+|.+.|-+.|..|.|+++-+.+.+ ||.. ..-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666665522 22333445566666666666666666665543 3221 2223444555666666666
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002460 579 SIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN 658 (919)
Q Consensus 579 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 658 (919)
++|..+.+.|. --...... |+..|-+..+|++|+++-++..+-+
T Consensus 128 ~~f~~L~de~e-fa~~Alqq-----------------------------------Ll~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQ-----------------------------------LLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcchh-hhHHHHHH-----------------------------------HHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 66666655331 11122333 4555555555555555555443322
Q ss_pred ee--------eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 002460 659 TV--------LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE 729 (919)
Q Consensus 659 ~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 729 (919)
.. .|.-+...+....+.+.|..++++..+. .|+.+ .-..+.......|+++.|.+.++...+. +..--
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl 248 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYL 248 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHH
Confidence 22 2333455556678899999999999985 56555 3445566788999999999999999875 33334
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh-
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA- 807 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~- 807 (919)
.++...|..+|...|+.++...++.++ ...+....-..+...-..+.-.+.|...+.+-+.-.|.--+.|.++.--..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 778888999999999999999999886 455555555555554444455667777777777888865555554443333
Q ss_pred -hcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhCCcccCCCccc
Q 002460 808 -AANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKEGGYVPDTDFVL 859 (919)
Q Consensus 808 -~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~ 859 (919)
..|++.+-....+.|....++..|. -...+-||...+-+|.
T Consensus 329 aeeg~~k~sL~~lr~mvge~l~~~~~-----------YRC~~CGF~a~~l~W~ 370 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQLRRKPR-----------YRCQNCGFTAHTLYWH 370 (389)
T ss_pred ccccchhhhHHHHHHHHHHHHhhcCC-----------ceecccCCcceeeeee
Confidence 4567888888888888766665552 2334556655554443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-08 Score=96.39 Aligned_cols=229 Identities=16% Similarity=0.104 Sum_probs=156.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHc
Q 002460 562 TTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKC 641 (919)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 641 (919)
+-|..+|.+.|.+.+|.+.|+.-++. .|-..||..+-.+|.+....+.|..++..-.+. ++-++....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555666666666666666665553 344445555555555555555555555444432 122333333455666677
Q ss_pred CCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHH
Q 002460 642 GNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFH 718 (919)
Q Consensus 642 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 718 (919)
++.++|.++++...+ .++.+..++..+|.-.++++-|+.+|+++++.|+. +...|+.+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 778888888887663 36667777777888888888888888888888754 45667777777777777777766666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 719 LMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 719 ~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
+.... +-+.++ -+.+|..|.......||+..|.+.++-++..+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 55432 111111 23467777777777899999999999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 799 YVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 799 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
++.|+-+-.+.|+.++|..+++..+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999876653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-08 Score=112.38 Aligned_cols=210 Identities=11% Similarity=-0.009 Sum_probs=157.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHH---------cCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCC
Q 002460 607 TALEQGRQIHANLIKLDCSSDPFVGISLVDMYAK---------CGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGN 674 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 674 (919)
+.+++|.+.++..++.... +...+..+..+|.. .+++++|...+++... .+..+|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3457888888888776422 33455555555442 2458899999998763 356788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-EHYSFLVDALGRAGRTKEAGEL 752 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~~~r~g~~~eA~~~ 752 (919)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++...+ +.|+. ..+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 46764 4677788889999999999999999875 45652 2333445556678999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 753 ILSMP--FEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 753 ~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+++.- ..|+ +..+..+..++...|+.++|+..++++....|.+......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98862 2354 4446666667778899999999999998888888888888888888888 477776666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-08 Score=91.36 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=135.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDAL 740 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~ 740 (919)
-.|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|...|..+.|.+.|+.... +.|+ -.+.|....-+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3466778889999999999999988 46754 4888888899999999999999988864 5664 67788888889
Q ss_pred hhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 741 GRAGRTKEAGELILSMPFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
|.+|++++|...|++.-..|. +.+|..+.....+.|+.+.|+..+++.++++|+++.+...+++.....|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999988743443 3577777777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 002460 817 SARGEMKRKNV 827 (919)
Q Consensus 817 ~~~~~m~~~~~ 827 (919)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99988877765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-07 Score=99.79 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHhccCCC----------CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhc-----CC-C
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFNDIPA----------PDDV-AWTTMISGCVDNGEEDLALSIYHQMRLS-----GV-V 590 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 590 (919)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444466666666666666666654321 2222 2334566777888888888888887642 21 1
Q ss_pred CC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhC---CCCCe-eeehHH
Q 002460 591 PD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM---DMRNT-VLWNAM 665 (919)
Q Consensus 591 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~-~~~~~l 665 (919)
|. ..++..|-.+|.+.|++++|...++.+.+. ++.. ..+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 21 235566666788888888888877665431 1110 00111 112334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCCC-hhH
Q 002460 666 LVGLAQHGNGEETLKLFEDMKAH---GVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKY-----GIEPE-VEH 732 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~ 732 (919)
+..|...+++++|..++++..+. -+.++. -++..|...|.+.|++++|.++|+++.... +..+. -.+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 44455555555555555544331 122333 267888888888888888888888876642 11222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM--------PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
++.|...|.+.++..+|.++|.+. +..|+. .++..|...|...|+++.|+++.+++..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 777888888888888888777664 344544 5788899999999999999999888874
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.00014 Score=82.55 Aligned_cols=357 Identities=14% Similarity=0.035 Sum_probs=203.0
Q ss_pred HHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 002460 443 AEAEYLFENK---DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM 519 (919)
Q Consensus 443 ~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 519 (919)
..|...+... ...+...||.|--. ...|.+.-|...|-+-.... +-...+|..+-..|....+++.|.+.+..+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 3556666543 34577788887554 55567777777776655432 3345567776667778888888888888766
Q ss_pred HhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccC-----CC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----
Q 002460 520 KSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDI-----PA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRL----- 586 (919)
Q Consensus 520 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 586 (919)
... +.|...|-.....-...|+.-++..+|..- .+ ++..-|-.-..-...+|+.++-+..-+++-.
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 543 333344433333344567777777777642 11 4444554444455677777665554444322
Q ss_pred ----cCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHc-CCCCCchhhc----HHHHHHHHcCCHHHHHHHHHhCCC-
Q 002460 587 ----SGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKL-DCSSDPFVGI----SLVDMYAKCGNIEDAYILFKQMDM- 656 (919)
Q Consensus 587 ----~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~- 656 (919)
.|.+.+...|........+.+..+.+.+...+++.. ...-+...|+ -+...++..|.++.|..-+.....
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 234556667777777777777777776665554321 1122333333 344566677888877776665542
Q ss_pred CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002460 657 RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYS 734 (919)
Q Consensus 657 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 734 (919)
.+..+-..-+.. .-.|+++++++.|++...-- -..|.+ ....++-+...++.-+.|...+-+... --+|+....-
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~--ls~~~~~sll 1113 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS--LSKVQASSLL 1113 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH--hCccchhhHH
Confidence 122221222222 44678999999999988721 112222 334444455566777777776655544 2345555554
Q ss_pred HHHHHHhhcCC---HHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 002460 735 FLVDALGRAGR---TKEAGELILSMP----FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 735 ~li~~~~r~g~---~~eA~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 807 (919)
+|.-++.-..+ ..-+++-+.+.+ +.-++.....+ .+..+|+-.......++..-.+|.|+..|.+|.+=|+
T Consensus 1114 ~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44443332221 122222222221 11112222222 2567788888999999999999999999999985444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-05 Score=86.18 Aligned_cols=364 Identities=15% Similarity=0.101 Sum_probs=212.5
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHH
Q 002460 437 CRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCLLMLKQGKQMH 515 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 515 (919)
.+.++.|+|...++.....|..+...-.+.+.+.|++++|+++|+.+.+.+..--.. .-..++.+-... .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~---- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV---- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----
Confidence 356788999998885555555455555677888999999999999997765432221 122222221111 00
Q ss_pred HHHHHhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHhccC--------CCCCh-----h-----hHHHHHHHHHHcCChh
Q 002460 516 AYAMKSGFELD--LCVSSGILDMYVKCGAMVDAQSIFNDI--------PAPDD-----V-----AWTTMISGCVDNGEED 575 (919)
Q Consensus 516 ~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~-----~-----~~~~li~~~~~~g~~~ 575 (919)
..+......|+ -..+-.....+...|++.+|+++++.. .+.|. . .---|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 01111112221 112222445567889999999988766 21111 1 1122445667889999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHH---HHcccccHHH--HHHH------------HHHHHHcCCCCCchhhcHHHHHH
Q 002460 576 LALSIYHQMRLSGVVPDEFTFAILVK---ASSCLTALEQ--GRQI------------HANLIKLDCSSDPFVGISLVDMY 638 (919)
Q Consensus 576 ~A~~~~~~m~~~g~~p~~~t~~~ll~---a~~~~~~~~~--a~~~------------~~~~~~~~~~~~~~~~~~li~~y 638 (919)
+|.+++...++.. .+|........+ +...-.++-. .... ...+.. .-.....--++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999998874 445433222221 2222111111 1111 111111 0011122224455555
Q ss_pred HHcCCHHHHHHHHHhCCCCC-eeeehHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHH
Q 002460 639 AKCGNIEDAYILFKQMDMRN-TVLWNAMLVGLA--QHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 639 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 713 (919)
. +..+.+.++-...+... ...+.+++.... +.....+|.+++...-+. .|+. +.....+..-...|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4 45566777776666433 334444444332 223577888888877664 5544 3455556667889999999
Q ss_pred HHHHH--------HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC
Q 002460 714 YENFH--------LMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--------PFEAS-ASMHRALLGACRVQG 776 (919)
Q Consensus 714 ~~~~~--------~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 776 (919)
.+++. .+.+. +.. +.+...++.++.+.+..+-|.+++.+. +..+. ..+|.-+...-.++|
T Consensus 396 ~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 44332 333 445666888888888776666666554 22222 234555555567789
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHH
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSA 818 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 818 (919)
+-++|...++++.+.+|+|....+.|.-+|+... .+.|..+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9999999999999999999999999998888653 3445444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-07 Score=94.36 Aligned_cols=216 Identities=13% Similarity=0.005 Sum_probs=146.3
Q ss_pred CChhHHHHHHHHHHhcC-CCCC--HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHH
Q 002460 572 GEEDLALSIYHQMRLSG-VVPD--EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAY 648 (919)
Q Consensus 572 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 648 (919)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666666432 1222 2335555556667777777777777776654 235667888889999999999999
Q ss_pred HHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 002460 649 ILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYG 725 (919)
Q Consensus 649 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 725 (919)
..|++..+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998863 3 466788888999999999999999999998 467654322223334567889999999977654 3
Q ss_pred CCCChhHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 726 IEPEVEHYSFLVDALGRAGRT--KEAGELILSM-PF----EA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 726 ~~p~~~~y~~li~~~~r~g~~--~eA~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
..|+...+ .++..+ .|++ +++.+.+.+. .. .| ....|..+...+...|+.++|+..++++++++|.|
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 34443322 333333 3444 3333333321 21 12 23578889999999999999999999999999744
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-05 Score=84.78 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=91.7
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
+......+.+|..+.+.+...... ..-|.-+.+.|+..|+++.|+++|-+.. .++--|..|.+.|++++|.++
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 333444555555555544443211 1223345556666666666666655432 334455556666666666555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 002460 682 FEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEAS 761 (919)
Q Consensus 682 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~ 761 (919)
-.+.. |.+.....|..-..-.-..|++.+|.++|-.+. .|+. -|.+|-+.|..++.+.++.+-.-.--
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 54432 111122234433444555566666655543321 1322 24455566666666666555421112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHH
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 819 (919)
..+...+..-+-..|++..|+..+-++- -+..-.|+|-.++.|++|-++-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2344444445555566655555543322 2334455666666666655543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-06 Score=83.53 Aligned_cols=255 Identities=17% Similarity=0.082 Sum_probs=187.4
Q ss_pred HHHHHHH--HHcCChhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchh-hcHHHHH
Q 002460 562 TTMISGC--VDNGEEDLALSIYHQMRLSG-VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFV-GISLVDM 637 (919)
Q Consensus 562 ~~li~~~--~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~ 637 (919)
...|.++ +-.++...|..++-...... ++-|...+..+...+...|+.+++...|+...-.+ |+... .-...-.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHH
Confidence 3445554 44566667776666555443 45566678888899999999999999998876643 22211 1112334
Q ss_pred HHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHH
Q 002460 638 YAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 713 (919)
+.+.|++++-..+...+... ...-|-.-.......++++.|+.+-++-++ +.|+.+ .|..-..++...|++++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHH
Confidence 56788999888887776633 344566666667788999999999999987 466544 666666778899999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHH
Q 002460 714 YENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-P-FEASASMHRALL-GACRVQ-GDTETGKWVAEKL 788 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~-~~p~~~~~~~ll-~~~~~~-g~~~~a~~~~~~~ 788 (919)
.-.|+... .+.| +...|.-|+..|...|++.||.-+-+.. . +..++.+...+. ..|.-. .--|+|+..+++.
T Consensus 354 ~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 354 VIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999886 4666 5899999999999999999998776543 2 223444443332 234332 3458899999999
Q ss_pred HhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 789 MALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 789 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
+.++|.-.++.+.++.++...|+.++++.+++.-.
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 99999999999999999999999999999886543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=90.85 Aligned_cols=226 Identities=14% Similarity=0.079 Sum_probs=187.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHH-HHHHH
Q 002460 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFA-ILVKA 602 (919)
Q Consensus 526 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 602 (919)
|-.--+-+..+|.+.|.+.+|++.|+.-. .|-+.||-.|-..|.+-.+++.|+.+|.+-++. .|..+||. -..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 33444678899999999999999998765 367778888999999999999999999987764 67777765 45567
Q ss_pred HcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHH
Q 002460 603 SSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETL 679 (919)
Q Consensus 603 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 679 (919)
+...+..+++.++++...+.. +.++....++...|.-.+++|-|.+.+.++. ..+...|+.+.-+|.-.+++|-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 778899999999999988864 3456666778888888999999999999876 467888999999999999999999
Q ss_pred HHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 680 KLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
..|++.+..--.|+.. .|..+.......|++.-|.+.|+.... .-..+.+.++.|.-+-.|.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999998876567654 677788788889999999999998865 23334788999998889999999999999876
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-05 Score=75.24 Aligned_cols=403 Identities=13% Similarity=0.090 Sum_probs=246.1
Q ss_pred cchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHH
Q 002460 405 EGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFS 481 (919)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 481 (919)
++...+..+++.....+-+....+---+...+.+.|++++|...+..+.+ ++...|-.|.-++.-.|.+.+|..+-.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34555555555544333322223333355677889999999999876443 344567777777777788888877765
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--CChh
Q 002460 482 HMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDV 559 (919)
Q Consensus 482 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~ 559 (919)
+.. -++-....++...-+.++-++-..+|..+... ..-.-+|..+.-..-.+.+|.+++.++.. |+-.
T Consensus 116 ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 116 KAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred hCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 542 23344455666666778877777777765432 23334566665556678999999998874 5555
Q ss_pred hHHHH-HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccc----ccHH--HHHH----------HHHHHHHc
Q 002460 560 AWTTM-ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCL----TALE--QGRQ----------IHANLIKL 622 (919)
Q Consensus 560 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----~~~~--~a~~----------~~~~~~~~ 622 (919)
..|.- .-+|.+..-++-+.++++--++. -||+. +..=+.+|..- |+.. +-.+ .-+.+.++
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 55553 34677777788777777766654 34432 22223333221 1111 1111 11222222
Q ss_pred CC------C------CC-----chhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCC-------HHHH
Q 002460 623 DC------S------SD-----PFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGN-------GEET 678 (919)
Q Consensus 623 ~~------~------~~-----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A 678 (919)
++ + |. +..--.|+--|.+++++.+|..+.++..+..+.-|-.-.-.++.+|+ ...|
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11 0 10 11112255568899999999999998876555544433334455554 4456
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 002460 679 LKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP 757 (919)
Q Consensus 679 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~ 757 (919)
.+.|+-.-+++..-|.+ .--++.+++.-...+|+.+-+++++.. |-...|...|+ +..+++..|++.+|+++|-...
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc
Confidence 66665554555554443 234455555556778999999998876 34444555554 7889999999999999998873
Q ss_pred --CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhC-CCCCc-hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 758 --FEASASMHRALLGACRVQ-GDTETGKWVAEKLMALE-PFDSS-AYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 758 --~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
.-.|..+|.+++.-|..+ +..+.|..++ +..+ |.+.- ..-+.++.|.+.+.+-=|.+.|..+...
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 224678888888888766 6777666554 4433 32222 2346778899999988888888877643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.8e-06 Score=86.02 Aligned_cols=385 Identities=16% Similarity=0.102 Sum_probs=221.4
Q ss_pred HHHhcCCHHHHHHHHhc---CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCchHH
Q 002460 435 VYCRNGSMAEAEYLFEN---KDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDE-ITIATAVKACGCLLMLKQ 510 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 510 (919)
+.+..|+++.|...|-. +..+|.+.|..=..+|+..|++++|++=-.+-++ +.|+- ..|...-.+....|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 45667889999999875 3344777888888899999999988876666655 45664 478888888888899999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhcc------CC-CC------ChhhHHHHHHHHHHc------
Q 002460 511 GKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFND------IP-AP------DDVAWTTMISGCVDN------ 571 (919)
Q Consensus 511 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~------m~-~~------~~~~~~~li~~~~~~------ 571 (919)
|..-|..-++.. +.+....+.|.+++... ..+.+.|.. .. .| ....|..++..+-++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 988888766654 45566777777777111 011112211 00 00 111233333322211
Q ss_pred ----CChhHHHHHHHH-----HHhcC-------CCCC------------H----------hHHHHHHHHHcccccHHHHH
Q 002460 572 ----GEEDLALSIYHQ-----MRLSG-------VVPD------------E----------FTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 572 ----g~~~~A~~~~~~-----m~~~g-------~~p~------------~----------~t~~~ll~a~~~~~~~~~a~ 613 (919)
.+...|...+.. +...| ..|. . .-...+.++.-+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 011111111110 00000 1110 0 01223334444445555555
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee----------eehHHHHHHHhcCCHHHHHHHHH
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV----------LWNAMLVGLAQHGNGEETLKLFE 683 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~ 683 (919)
+-+....... .+..-++.....|...|.+.+....-+...+..-. +...+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 5555555544 34444455566666666665555444433321110 11123345556666777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 002460 684 DMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV--EHYSFLVDALGRAGRTKEAGELILSM-PFEA 760 (919)
Q Consensus 684 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p 760 (919)
+.+..-..||.. .+....+++....+... -+.|.. +.-. =..-+.+.|++.+|+..+.++ ...|
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~-kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEERE-KGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHH-HHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 765543333321 11122233333322221 233331 1112 255667889999999999887 4456
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch-HHHHHH
Q 002460 761 -SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAK 838 (919)
Q Consensus 761 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-~~i~~~ 838 (919)
|+..|.....++.+.|++..|..-+++.++++|+....|..-+.++....+|++|.+.+.+ +++.+|. .++.+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e----ale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE----ALELDPSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCchhHHHHHH
Confidence 5567777777778889999999999999999999999999999999999999999999954 4455565 444444
Q ss_pred HHHHHH
Q 002460 839 VEGLIK 844 (919)
Q Consensus 839 l~~l~~ 844 (919)
+.+-..
T Consensus 466 ~~rc~~ 471 (539)
T KOG0548|consen 466 YRRCVE 471 (539)
T ss_pred HHHHHH
Confidence 444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00017 Score=77.52 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=119.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH---HHHHHhccCchHHH--HHHHHH-----------HHHhCCCCC
Q 002460 463 MIFGYILSNNSHKALELFSHMHTSGERLDEITIAT---AVKACGCLLMLKQG--KQMHAY-----------AMKSGFELD 526 (919)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a--~~~~~~-----------~~~~g~~~~ 526 (919)
|.-.+...|+.++|..++....... .+|...... =|.+.....++-.+ ...++. .+...-...
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445666788888888888887764 344422222 22222222221111 000000 000000011
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHhccCCCCC-hhhHHHHH-HHHH-HcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 002460 527 LCVSSGILDMYVKCGAMVDAQSIFNDIPAPD-DVAWTTMI-SGCV-DNGEEDLALSIYHQMRLSGVVPDEFTFAILVKAS 603 (919)
Q Consensus 527 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 603 (919)
..--+.|+.+|. +..+.+.++-...+... ...+.+++ .++. +...+.+|.+++...-+....-........+...
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 112234444443 34555666666655422 22233333 2222 2224566666666554432222233344445555
Q ss_pred cccccHHHHHHHHH--------HHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCH
Q 002460 604 SCLTALEQGRQIHA--------NLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNG 675 (919)
Q Consensus 604 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 675 (919)
...|+++.|.+++. .+.+.+..| .+..+++.+|.+.++-+.|..++++..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai-------------------- 444 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAI-------------------- 444 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHH--------------------
Confidence 66677777777766 333333333 333445666666665555555544322
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 002460 676 EETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELIL 754 (919)
Q Consensus 676 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~ 754 (919)
..|..-... ++.. .++.-+...-.+.|..++|..+++++.+ -.+++.....++|.+|++. +.+.|+.+-+
T Consensus 445 ----~~~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 445 ----KWWRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred ----HHHHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 111111100 0110 1122222222344677777777777665 2445666677777777654 3666666666
Q ss_pred hCC
Q 002460 755 SMP 757 (919)
Q Consensus 755 ~m~ 757 (919)
.++
T Consensus 516 ~L~ 518 (652)
T KOG2376|consen 516 KLP 518 (652)
T ss_pred cCC
Confidence 664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0002 Score=77.81 Aligned_cols=318 Identities=15% Similarity=0.119 Sum_probs=184.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHhccCchHHHHHHHHHHHHhCCCCChh
Q 002460 456 DLATWNAMIFGYILSNNSHKALELFSHMHTSG-ERLDEITIATAVK------ACGCLLMLKQGKQMHAYAMKSGFELDLC 528 (919)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 528 (919)
....|..+.-++.-.|++..|..++++..+.. -.|+...+..... .....|.++.|.+........ +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 34567777777777788888888777776654 2455555543322 223445556665554432221 112222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhccCCC--CChhhHHHHH-HHHHHcCChhHHH-HHHHHHHhcC---CCCCHhHHHHHHH
Q 002460 529 VSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAWTTMI-SGCVDNGEEDLAL-SIYHQMRLSG---VVPDEFTFAILVK 601 (919)
Q Consensus 529 ~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t~~~ll~ 601 (919)
.-..-.+.+.+.+++++|..++..+.. ||...|+-.. .++.+-.+.-+++ .+|....+.- -.|-.... +
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----s 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----S 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----H
Confidence 334456678888999999999988764 5656555444 3343333344444 5555544321 11211111 1
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHH---H-HHHHHHhCC--------------CCCeeeeh
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIE---D-AYILFKQMD--------------MRNTVLWN 663 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~---~-A~~~~~~~~--------------~~~~~~~~ 663 (919)
......-.+....++....+.|+++ ++..+...|-.-...+ + +..+...+. .|....|.
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 1112222333444556666667654 2333333332211111 1 111111111 23444555
Q ss_pred H--HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 664 A--MLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 664 ~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
. ++..|-..|+++.|+...+..+.+ .|+.+ -|..=...+.|.|++++|..++++..+ --.||...-+--+.-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHH
Confidence 4 677788999999999999999874 67665 465666789999999999999999876 3456666555667777
Q ss_pred hhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHH--HHHhcCCHHHHHHHH
Q 002460 741 GRAGRTKEAGELILSMPFEA-S--------ASMHRALLG--ACRVQGDTETGKWVA 785 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p-~--------~~~~~~ll~--~~~~~g~~~~a~~~~ 785 (919)
.|+.+.++|.++.....-+. + .-+|-.+-. ++.++|++.+|..-+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 89999999999887652111 2 235555443 577888887776543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00058 Score=74.43 Aligned_cols=390 Identities=12% Similarity=0.044 Sum_probs=208.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHh
Q 002460 428 VSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACG 503 (919)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~ 503 (919)
+.....-.+...|+.++|....+..... +.+.|..+.-.+....++++|+..|+..... .||.. .+.-+--.-+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQI 120 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 3333334456678899998888765544 5677999988888889999999999998874 44443 3333222234
Q ss_pred ccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-----CChhhHHHH------HHHHHHcC
Q 002460 504 CLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-----PDDVAWTTM------ISGCVDNG 572 (919)
Q Consensus 504 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~l------i~~~~~~g 572 (919)
..++++..........+.. +.....|..+..++.-.|+...|..+.+...+ ++...+.-. .....++|
T Consensus 121 QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555555555444432 22334456666666667777777666654331 333332221 23345666
Q ss_pred ChhHHHHHHHHHHhcCCCCCHhHHH-HHHHHHcccccHHHHHHHHHHHHHcCCCCCchhh-cHHHHHHHHcCCHHHHH-H
Q 002460 573 EEDLALSIYHQMRLSGVVPDEFTFA-ILVKASSCLTALEQGRQIHANLIKLDCSSDPFVG-ISLVDMYAKCGNIEDAY-I 649 (919)
Q Consensus 573 ~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~-~ 649 (919)
..++|++.+..-... ..|...+. +-...+.+.+++++|..++..++... ||..-| --+..++++--+.-++. .
T Consensus 200 ~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred cHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 677777666553321 11222221 22334556677777777777666654 333333 33344444332323333 4
Q ss_pred HHHhCCCC--CeeeehHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH----HHHHHHHhHH
Q 002460 650 LFKQMDMR--NTVLWNAMLVGLAQ-HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSE----AYENFHLMRE 722 (919)
Q Consensus 650 ~~~~~~~~--~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~ 722 (919)
+|....+. ....-.-+--.... ..-.+..-+++..+.+.|++|- |..+.+-|-.-...+- +..+...+..
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 44443311 00000000000111 1112333445566666665542 2333333322222111 1112121111
Q ss_pred h--------cC-CCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 723 K--------YG-IEPEV--EHYSFLVDALGRAGRTKEAGELILSM-PFEASAS-MHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 723 ~--------~~-~~p~~--~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
. -. -+|+. .++-+++..+-+.|+++.|+..++.. ...|+.+ .+.+=...+...|+++.|-..++.+.
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 0 00 13443 34456777778888888888888876 4556543 33344455666788888888888888
Q ss_pred hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 790 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
+++-.|-..--.-++-..++.+.++|.++.......|.
T Consensus 433 elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 433 ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 88765554444556666677888888888777766654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-05 Score=76.47 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=220.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhc
Q 002460 429 STALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATA-VKACGC 504 (919)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 504 (919)
+++.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-+.++++-. ..|...-|..- ...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 445555566777888888887655443 445567777788888888888888888765 34544444321 223334
Q ss_pred cCchHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHHcCCHHHHHHHhccCC-CCChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 505 LLMLKQGKQMHAYAMKSGFELDLCVSSGIL--DMYVKCGAMVDAQSIFNDIP-APDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 505 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li--~~y~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.+.+..|.++...+... ++...-..-+ ...-..+++..+..+.++.+ +.+..+.+.......+.|++++|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 45555666665555331 1111111111 11234567777788888887 355555555555567888899999888
Q ss_pred HHHHhc-CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCC-------------c--------hhhcHHHH---
Q 002460 582 HQMRLS-GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSD-------------P--------FVGISLVD--- 636 (919)
Q Consensus 582 ~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-------------~--------~~~~~li~--- 636 (919)
+...+- |..| ...|+..+ +.-+.++.+.|.+...+++++|+... + -+-++++.
T Consensus 168 qaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 887764 4544 45566544 34466788888888888887765421 1 11123333
Q ss_pred ----HHHHcCCHHHHHHHHHhCCCC-----CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhc
Q 002460 637 ----MYAKCGNIEDAYILFKQMDMR-----NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSY 706 (919)
Q Consensus 637 ----~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 706 (919)
.+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+++ +.| ...||..++-.||+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhh
Confidence 456789999999999999854 777776654332 23455555555555665 355 45699999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCH----HHH
Q 002460 707 TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGAC-RVQGDT----ETG 781 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~-~~~g~~----~~a 781 (919)
...++-|..++.+-..-.-.-.+...|+.|=.+....-..++|.+-+..+...-....-..-+..- .++.+- ..+
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 988888887764322110001123344433333334456777776665542100000111111111 122222 223
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
..-+++.+++- -...+.-+++|+...++..+.+.|..
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRK 439 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHH
Confidence 34455555542 12456677889999999999888754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-05 Score=85.85 Aligned_cols=294 Identities=11% Similarity=-0.044 Sum_probs=166.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHhccCC---CCChhh---HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHH---HH
Q 002460 530 SSGILDMYVKCGAMVDAQSIFNDIP---APDDVA---WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAI---LV 600 (919)
Q Consensus 530 ~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll 600 (919)
+..+...|...|+.+++.+.+.... ..+... .......+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHH
Confidence 4444455555566555544443322 111111 1222334567788888888888877652 223223331 11
Q ss_pred HHHcccccHHHHHHHHHHHHHcCCCCC-chhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHH
Q 002460 601 KASSCLTALEQGRQIHANLIKLDCSSD-PFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGE 676 (919)
Q Consensus 601 ~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 676 (919)
......+..+.+.+.... .....|+ ......+...+...|++++|...+++... .+...+..+...|...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111223444444444433 1122222 23334556678888999999998888763 34567777888888999999
Q ss_pred HHHHHHHHHHHcCC-CCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHH
Q 002460 677 ETLKLFEDMKAHGV-EPDS--VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHY-S--FLVDALGRAGRTKEAG 750 (919)
Q Consensus 677 ~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~--~li~~~~r~g~~~eA~ 750 (919)
+|+..+++.....- .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999988877421 1222 234567777888899999999998875321111111111 1 2233333444333332
Q ss_pred HH---HHh---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------CCchHHHHHHHHhhcCCcch
Q 002460 751 EL---ILS---M-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPF---------DSSAYVLLSNIFAAANQWDD 814 (919)
Q Consensus 751 ~~---~~~---m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~y~~~g~~~~ 814 (919)
+. ... . +.............++...|+.+.|...++.+....-. ......+.+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 22 111 1 11111222234555667778899999888887653221 24456678888999999999
Q ss_pred HHHHHHHHHhCC
Q 002460 815 VTSARGEMKRKN 826 (919)
Q Consensus 815 a~~~~~~m~~~~ 826 (919)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 998887665443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00016 Score=82.07 Aligned_cols=559 Identities=15% Similarity=0.074 Sum_probs=306.8
Q ss_pred HHHHHHHHhCCCCc-HhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 002460 180 TVHGYALKIGLVWD-EFVSGALVNIYSKFGKIREAKFLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSG 255 (919)
Q Consensus 180 ~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 255 (919)
.++..+....+.++ ...|..|-..|+..-+...|.+.|+..-+ -|..+|.....-|++..++++|+.+.-. ...
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~--~~q 554 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR--AAQ 554 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH--Hhh
Confidence 33333333344444 35788999999988899999999998766 3667899999999999999999999332 222
Q ss_pred CCCCh-hhHHHHHHHhhhhcc-h-hHHHHHHHHH--HHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCC
Q 002460 256 LCPDD-ESVQCVLGVISDLGK-R-HEEQVQAYAI--KLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQY 330 (919)
Q Consensus 256 ~~p~~-~t~~~ll~~~~~~~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 330 (919)
..|-. ..++-+ ..|. . ...+.+.-+. +...+.++.|...|..+..+|...|++..|+++|++...- .|
T Consensus 555 ka~a~~~k~nW~-----~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 555 KAPAFACKENWV-----QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred hchHHHHHhhhh-----hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22211 111111 1222 1 2333333332 3456778899999999999999999999999999887643 44
Q ss_pred CchhHHHHhhh--hcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchh
Q 002460 331 DSVTFLVALAA--VAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLH 408 (919)
Q Consensus 331 d~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~ 408 (919)
+. +|...-.+ -+..|...++...++.++..-- ......+.|...+.++.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-~e~~~q~gLaE~~ir~a--------------------------- 678 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFS-LERTGQNGLAESVIRDA--------------------------- 678 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHH---------------------------
Confidence 43 33322222 2456778888777776654310 00011111111111111
Q ss_pred hhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-------HHHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHH
Q 002460 409 LSKQIHVHAIKNDTVADSFVSTALIDVYCRNGS-------MAEAEYLFENKD----GFDLATWNAMIFGYILSNNSHKAL 477 (919)
Q Consensus 409 ~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~-------~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 477 (919)
..+.-.|- ++++.+.|--.. ..|...|-.+-+ |.
T Consensus 679 -------------------------kd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd----------ac 723 (1238)
T KOG1127|consen 679 -------------------------KDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD----------AC 723 (1238)
T ss_pred -------------------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH----------HH
Confidence 00011111 122222221110 112223333222 22
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCch---H---HHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cC----CH
Q 002460 478 ELFSHMHTSGERLDEITIATAVKACGCLLML---K---QGKQMHAYAMKSGFELDLCVSSGILDMYVK----CG----AM 543 (919)
Q Consensus 478 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g----~~ 543 (919)
.+|-... .. .|+......+..-.-..+.. + .|-+.+ .....+..+...|..|+.-|.+ +| +.
T Consensus 724 ~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 724 YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 2232222 11 22222222222212222221 1 011111 1111122334444444443333 22 23
Q ss_pred HHHHHHhccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 544 VDAQSIFNDIP---APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 544 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
..|...+.... ..+...||.|--. ..-|.+.-|...|-+-... .+-...+|..+--.|....+++.|.+.+....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35566665443 3677788887655 4556676676666655443 23355677777777888889999999888777
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhC-----C---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM-----D---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAH---- 688 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 688 (919)
...+ .+..-+--....-...|+.-++..+|.-- . .++..-|-+-..-...+|+.++-+...+++...
T Consensus 878 SLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 6542 22233322222333567777777777642 1 134444444444455666666544443332211
Q ss_pred ----CCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCC
Q 002460 689 ----GVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF----LVDALGRAGRTKEAGELILSMPFE 759 (919)
Q Consensus 689 ----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~----li~~~~r~g~~~eA~~~~~~m~~~ 759 (919)
+-.| +...|........+.+.+++|.+...+...-...+-+...|+. +.+++...|.++.|..-+...+.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1234 4567888888888888888888877766543333445555653 344556678888888777776666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh---hcCCcchHHHHH
Q 002460 760 ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA---AANQWDDVTSAR 819 (919)
Q Consensus 760 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~~a~~~~ 819 (919)
-+..+-.+-+..+ -.|+++.+...+++++.+..++....++++.+.. .++.-+.|....
T Consensus 1037 vdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred HHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 6666666655553 3489999999999999987766665566665544 445556666544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-05 Score=78.06 Aligned_cols=189 Identities=16% Similarity=0.107 Sum_probs=98.1
Q ss_pred cccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHH
Q 002460 604 SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLK 680 (919)
Q Consensus 604 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 680 (919)
...|+...+......+++.. +.|...+..-.++|...|++..|+.=++... ..+....--+-..+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555554433 3455556666667777777777766555443 3445555556666677777777777
Q ss_pred HHHHHHHcCCCCChhH-H---HHH---------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHhh
Q 002460 681 LFEDMKAHGVEPDSVT-F---IGV---------LSACSYTGLVSEAYENFHLMREKYGIEPE-----VEHYSFLVDALGR 742 (919)
Q Consensus 681 ~~~~m~~~g~~p~~~t-~---~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~~~r 742 (919)
..++-++ +.||... | ..| +......+.|.++.+-.+...+ ..|. ...+..+-..+..
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccc
Confidence 7777766 5666542 1 111 0012223344444444433332 2232 1222333344445
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 743 AGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 743 ~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
.|++-||++...+. .+.|| +.++.--..++.....++.|+.-++++.+.+|+|..+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 55666666555543 34443 4445445555555556666666666666666655433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-08 Score=64.01 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=27.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCC
Q 002460 189 GLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQ 221 (919)
Q Consensus 189 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 221 (919)
|+.||.++||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=76.23 Aligned_cols=162 Identities=19% Similarity=0.121 Sum_probs=90.5
Q ss_pred hcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhc
Q 002460 631 GISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSY 706 (919)
Q Consensus 631 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 706 (919)
+..+...|.+.|..+.|.+-|++.. ..+-.+.|....-+|..|++++|...|++....---| -..||..+.-+..+
T Consensus 72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 72 HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence 3344555555555555555555443 2344455555555666666666666666665531111 12355555555566
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002460 707 TGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKW 783 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 783 (919)
.|+.+.|.++|++..+ +.|+ ......+.+.....|++-+|..+++.. ...++.......+..-...||.+.+-+
T Consensus 152 ~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 152 AGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred cCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 6666666666666554 2333 445555666666666666666666654 223555555555555566666666666
Q ss_pred HHHHHHhhCCCC
Q 002460 784 VAEKLMALEPFD 795 (919)
Q Consensus 784 ~~~~~~~~~p~~ 795 (919)
.-.++....|..
T Consensus 229 Y~~qL~r~fP~s 240 (250)
T COG3063 229 YQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhCCCc
Confidence 666666666643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-05 Score=87.00 Aligned_cols=257 Identities=13% Similarity=0.071 Sum_probs=127.2
Q ss_pred HHHHHHcCCHHHHHHHhccCCC--CChhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHc----c-
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPA--PDDVAW-TTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASS----C- 605 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~- 605 (919)
...+...|++++|.+.++.-.. .|..+| ......|.+.|+.++|..+|+.+++. .|+...|...+..|. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3456778888888888876553 454444 44566777888888888888888876 356666655554443 1
Q ss_pred -cccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHH
Q 002460 606 -LTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFED 684 (919)
Q Consensus 606 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 684 (919)
....+.-.++++.+...-...+.. ..+.-.+.....+ -..+..++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F------------------------------~~~~~~yl~~ 136 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEF------------------------------KERLDEYLRP 136 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHH------------------------------HHHHHHHHHH
Confidence 123444445555443322111111 1011001110111 1223334444
Q ss_pred HHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhc-------------CCCCCh--hHHHHHHHHHhhcCCHHHH
Q 002460 685 MKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKY-------------GIEPEV--EHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 685 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~--~~y~~li~~~~r~g~~~eA 749 (919)
++..|+++ +|..|-..|......+-..+++....... .-.|+. .++..+...|.+.|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44444332 33333333443333333333333332211 011222 2334445555566666666
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 750 GELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 750 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
++++++. ...|+ +..+..-...+.+.|++++|...++.+.++++.|-..-.-.+..+-++|+.++|.++.......+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 6666654 33443 234444444555556666666666666666666555555555555666666666666555544443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=92.75 Aligned_cols=203 Identities=14% Similarity=0.086 Sum_probs=142.0
Q ss_pred cCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---------HHHHHHHHHhccC
Q 002460 641 CGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV---------TFIGVLSACSYTG 708 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g 708 (919)
.++=..|+..+.+.. ..|..+.-+|.-.|...|.-.+|+.+++..+... |-.. .+..- ....+..
T Consensus 332 NE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~-~s~~~~~ 408 (579)
T KOG1125|consen 332 NENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGENEDFENT-KSFLDSS 408 (579)
T ss_pred ccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCccccccCC-cCCCCHH
Confidence 333334444444433 2244455556666777777777777777776532 1100 00000 1222333
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002460 709 LVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAE 786 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 786 (919)
......++|-.+....+.++|...+.+|.-+|--.|.+++|.+.|+.+ ..+| |..+|+-|......-.+.++|+.+|.
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 445666777777766677788999999999999999999999999987 6677 66789999888888889999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh---C--CCCCCc--hHHHHHHHHHHHHHH
Q 002460 787 KLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR---K--NVKKDP--ADLIFAKVEGLIKRI 846 (919)
Q Consensus 787 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~---~--~~~~~~--~~~i~~~l~~l~~~~ 846 (919)
+++++.|.-..+...|+-.|...|.++||.+.+=.... + +-.+.| .+.|+..|......|
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987654432 2 122222 367888888555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-06 Score=88.77 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=79.5
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh----ccCCHH
Q 002460 636 DMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS----YTGLVS 711 (919)
Q Consensus 636 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 711 (919)
.+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHH
Confidence 3455567777776666554 33444455666777777777777777777663 3333 3333333322 223566
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDT-ETGKWVAEKL 788 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 788 (919)
+|..+|+++.++ ..+++...+.+.-+....|+++||.+++++. ...| ++.++-.++..+...|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777776553 3345555555555555666666666555543 2223 233444444444444444 4455555555
Q ss_pred HhhCCC
Q 002460 789 MALEPF 794 (919)
Q Consensus 789 ~~~~p~ 794 (919)
....|+
T Consensus 263 ~~~~p~ 268 (290)
T PF04733_consen 263 KQSNPN 268 (290)
T ss_dssp HHHTTT
T ss_pred HHhCCC
Confidence 555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-05 Score=85.75 Aligned_cols=246 Identities=16% Similarity=0.124 Sum_probs=143.1
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--CChhhH-HHHHHHHHHc-----
Q 002460 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAW-TTMISGCVDN----- 571 (919)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~----- 571 (919)
..+...|+.++|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4456789999999998664333 344466778889999999999999999999985 544444 4455544222
Q ss_pred CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHH-HHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 572 GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALE-QGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 572 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
...+...++|+++...- |.......+.-.+.....+. .+..+.....+.|+++ +++.|-..|....+.+-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 24677788899887753 54444443333333323333 3455667777778654 555666667655444444444
Q ss_pred HHhCC------------------CCCeeee--hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCC
Q 002460 651 FKQMD------------------MRNTVLW--NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGL 709 (919)
Q Consensus 651 ~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 709 (919)
+.... .|....| .-+...|-..|++++|+++.++.++. .|+.+ .|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 44321 0111123 33344455566666666666666653 45433 45555555666666
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 710 VSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 710 ~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
+++|.+..+.... +.+ |...-+-.+..+.|+|+.++|.+++...
T Consensus 244 ~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 244 LKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 6666666555543 222 3444444555555666666666555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=78.94 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 002460 707 TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGAC-RVQGD--TETG 781 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 781 (919)
.+..+++...++...+. -+.+...|..+...|...|++++|...+++. ...| +..++..+..+. ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777666552 3345888888999999999999999999886 4556 566777777663 56676 5999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
..+++++++.+|+++.++.+|+..+...|++++|...++++.+..-.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999998876543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-06 Score=84.19 Aligned_cols=178 Identities=10% Similarity=-0.005 Sum_probs=110.7
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCC--CC-e---eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----HH
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDM--RN-T---VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV----TF 697 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 697 (919)
...+..++..|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 33444566667777777777777776652 21 1 24566667777777777777777777763 44322 23
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 002460 698 IGVLSACSYT--------GLVSEAYENFHLMREKYGIEPEV-EHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRAL 768 (919)
Q Consensus 698 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~l 768 (919)
..+..++... |+.++|.+.|+.+... .|+. ..+..+... +...... . .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHHHHH
Confidence 3344444433 5666677777766553 2332 122111111 0000000 0 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDS---SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
...+...|+.+.|...++++++..|+++ .++..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999987654 68899999999999999999998877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-06 Score=77.38 Aligned_cols=105 Identities=12% Similarity=-0.036 Sum_probs=55.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ 775 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 775 (919)
.+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...+++. ...| ++..|..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 344445555566666555555543 223 3455555555555555555555555554 2233 344455555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 806 (919)
|+.++|...+++++++.|+++..+..++++.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5555555555555555555555555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-07 Score=61.70 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCCCcchhhHHHHHHHhCCChhHHHHHhccCC
Q 002460 83 SQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMP 115 (919)
Q Consensus 83 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 115 (919)
|+.||.++||.||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=89.17 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHhCCCCCeee---ehHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 002460 642 GNIEDAYILFKQMDMRNTVL---WNAML--VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~---~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 716 (919)
++-+.+..-+++........ +-.++ ..+...|++++|++++++- .+.......+..+...+++|.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555443222111 11222 3455679999999988652 3445566678889999999999999
Q ss_pred HHHhHHhcCCCCChh---HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 717 FHLMREKYGIEPEVE---HYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 717 ~~~m~~~~~~~p~~~---~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
++.|.+ +..|.. ...+.+..+.-.+++.+|.-+|+++ ...+++.+++.+..+....|++++|+..++++++.
T Consensus 154 l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 154 LKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999964 344422 2223344333345799999999998 34577888888888889999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCc-chHHHHHHHHHhC
Q 002460 792 EPFDSSAYVLLSNIFAAANQW-DDVTSARGEMKRK 825 (919)
Q Consensus 792 ~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~ 825 (919)
+|+|+.+...++-+....|+. +.+.+++..++..
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999999998 4566788777754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0061 Score=68.17 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.|..|...|....+|..|-+.+++|..+-
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 57789999999999999999999887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00046 Score=76.65 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=82.3
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 502 CGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 502 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.-..|+.+.|..++..+.. |-+++...|-.|+.++|-.+-++- .|......|...|-..|++.+|+..|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344555555555554432 223444455556666665554432 34555566777788888888888887
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHcccc---------------cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHH
Q 002460 582 HQMRLSGVVPDEFTFAILVKASSCLT---------------ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIED 646 (919)
Q Consensus 582 ~~m~~~g~~p~~~t~~~ll~a~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 646 (919)
.+.+ +|...|+.|-..+ +.-.|-.+++ +.|... .--+..|-|.|.+.+
T Consensus 991 TrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~~-----~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 991 TRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGYA-----HKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchhh-----hHHHHHHHhhcchHH
Confidence 7654 2333333332222 1222222222 222111 123456788888888
Q ss_pred HHHHHHhCC--------------CCCeeeehHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 647 AYILFKQMD--------------MRNTVLWNAMLVGLAQHGNGEETLKLFEDMK 686 (919)
Q Consensus 647 A~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 686 (919)
|+++--+-. ..|+...+--..-+..+.++++|..++-...
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 877632222 1233344444455667777888777765544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00068 Score=84.56 Aligned_cols=190 Identities=9% Similarity=-0.092 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcch--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCch
Q 002460 431 ALIDVYCRNGSMAEAEYLFENKDGFDLAT--WNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLML 508 (919)
Q Consensus 431 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 508 (919)
.....+...|++.+|..........+... .......+...|+++.+...+..+.......+..........+...+++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33455666777777777666555432211 1112233445677777666666553221111222222223333455677
Q ss_pred HHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHHcCCHHHHHHHhccCC----CCCh----hhHHHHHHHHHHcC
Q 002460 509 KQGKQMHAYAMKSGFE------LD--LCVSSGILDMYVKCGAMVDAQSIFNDIP----APDD----VAWTTMISGCVDNG 572 (919)
Q Consensus 509 ~~a~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~----~~~~~li~~~~~~g 572 (919)
+++......+.+.--. +. ......+...+...|++++|...+++.. ..+. ..++.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 7777776665442110 11 1111222334456677777766665432 1111 23344455556667
Q ss_pred ChhHHHHHHHHHHhcCCC---CC--HhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 573 EEDLALSIYHQMRLSGVV---PD--EFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 573 ~~~~A~~~~~~m~~~g~~---p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
++++|...+.+.....-. +. ..++..+...+...|+++.|...+....
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766665432110 11 1123333444555566666666554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0024 Score=68.27 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhc-CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCC-CchhhcHHHHHHHHcCCHHHHHHHH
Q 002460 574 EDLALSIYHQMRLS-GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSS-DPFVGISLVDMYAKCGNIEDAYILF 651 (919)
Q Consensus 574 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 651 (919)
.+.....+++.+.. ...|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ ++++++++++-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 34444455554432 22333 345556666666667777777777777766655 6777777777666 45667777777
Q ss_pred HhCCC--CC-eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-
Q 002460 652 KQMDM--RN-TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACSYTGLVSEAYENFHLMREKYG- 725 (919)
Q Consensus 652 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 725 (919)
+--.+ +| +.--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 75442 23 333344555566667777777777777776666654 3677777777777777777777666666544
Q ss_pred -CCCChhHHHHHHHHHhhcCCHH
Q 002460 726 -IEPEVEHYSFLVDALGRAGRTK 747 (919)
Q Consensus 726 -~~p~~~~y~~li~~~~r~g~~~ 747 (919)
.+|...+-..+++.|+-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 4444445555566665555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-05 Score=91.74 Aligned_cols=213 Identities=17% Similarity=0.152 Sum_probs=176.6
Q ss_pred CCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC--------CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hH
Q 002460 626 SDPFVGISLVDMYAKCGNIEDAYILFKQMDMR--------NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-VT 696 (919)
Q Consensus 626 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 696 (919)
.+...|-..|......+++++|.+++++.... -...|-++++.-...|.-+...++|+++.+. -|. ..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 34456666777788899999999999988632 3458999999988999889999999999873 343 46
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA---SASMHRALLGAC 772 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 772 (919)
|..|+..|.+.+..++|.++++.|.++++ -....|...++.+.++.+-++|..+++++ ..-| -.....-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999877 66788999999999999999999999885 3333 334555566667
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLI 843 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~ 843 (919)
.++||.++|+.+++.++.-.|.-...|..++.+-.+.|..+.+..+|++....++.+.--+..|.++-+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998887554455665555444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=89.17 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=112.4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHH
Q 002460 691 EPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEASAS-MHRA 767 (919)
Q Consensus 691 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ 767 (919)
..+...+..|..+..+.|..++|..+++...+ +.|+ ......++..+.+.+++++|+..+++. ...|+.. ....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34577888899999999999999999999864 5786 667778889999999999999999987 6677554 5555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 768 LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 768 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+..++...|++++|..+|++++..+|+++.+++.++.++...|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677779999999999999999999999999999999999999999999887754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00026 Score=69.46 Aligned_cols=272 Identities=14% Similarity=0.115 Sum_probs=152.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHhccCCC--CChhhHHH-HHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 002460 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAWTT-MISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKA 602 (919)
Q Consensus 526 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 602 (919)
+....+.|..+|-...++..|-..++++.. |...-|.. -...+-+.+.+.+|+.+...|... |+...-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 445556667777777777777777777653 33333322 134556677888888888877653 222211111111
Q ss_pred --HcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeehHHHHHHHhcCCHH
Q 002460 603 --SSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM----RNTVLWNAMLVGLAQHGNGE 676 (919)
Q Consensus 603 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 676 (919)
.-+.+++..+..+...... +.+..+.+...-...+.|++++|.+-|+...+ .....||.-+ +..+.|+++
T Consensus 120 AIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qya 195 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYA 195 (459)
T ss_pred HHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHH
Confidence 1123344444444333221 11222333333344566777777777766553 2334455433 333556677
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH-------HHHHHHHHhhcCCHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH-------YSFLVDALGRAGRTKEA 749 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------y~~li~~~~r~g~~~eA 749 (919)
.|+++..+.++.|++-.+.. + -|..-++..+ +.. | .|-.-| +|.-...+-+.|+++.|
T Consensus 196 sALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv-rsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV-RSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred HHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-hcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHH
Confidence 77777777777665522110 0 0111111110 000 0 011122 33333345688999999
Q ss_pred HHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 750 GELILSMP----FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 750 ~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.+.+..|| .+-|+++...+.- --..+++..+.+-++-+++++|--+.++..+.-+|++..-++-|..++-
T Consensus 261 ~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 261 QEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 99999995 2346776655432 2345677778888888899999888899999999999999999888774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=74.39 Aligned_cols=99 Identities=13% Similarity=-0.034 Sum_probs=87.1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 002460 726 IEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803 (919)
Q Consensus 726 ~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 803 (919)
+.|+ .+..+...+...|++++|...++.. ...| +...|..+..+|...|++++|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4454 3556788899999999999999986 4455 6788999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHhCC
Q 002460 804 NIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 804 ~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.3e-06 Score=73.51 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 807 (919)
.+..-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|...+.++..++|+||.++..++.+|-
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445555666778999999999999987 4566 56788889989999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHH
Q 002460 808 AANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIK 847 (919)
Q Consensus 808 ~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~ 847 (919)
..|+.+.|.+.|+......-.++-..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence 9999999999998877654222222555555555555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00082 Score=73.60 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCHhHHHH-HHHHHcccccHHHHHHHHHHHHHcCCCCCchhhc---
Q 002460 558 DVAWTTMISGCVDNGEEDLALSIYHQMRLSGV-VPDEFTFAI-LVKASSCLTALEQGRQIHANLIKLDCSSDPFVGI--- 632 (919)
Q Consensus 558 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 632 (919)
...|..+...+...|+.+++.+.+.+..+... .++...... ....+...|++++|..+++.+.+... .+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 44666677777788888888777777654321 223322222 22345677899999999998887642 2333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCee---eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccC
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMDMRNTV---LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTG 708 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 708 (919)
.+.......|..+.+.+.+......+.. .+..+...+...|++++|+..+++..+. .|+ ...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 1222223356667777777653332222 3344556888999999999999999994 565 456778888899999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhcCCHH
Q 002460 709 LVSEAYENFHLMREKYGIEPEV--EHYSFLVDALGRAGRTKEAGELILSM-PFEA--SASMH--R--ALLGACRVQGDTE 779 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p--~~~~~--~--~ll~~~~~~g~~~ 779 (919)
++++|..+++.........|+. ..|..+...+...|++++|..++++. ...| ..... . .++.-....|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999887642222332 34567888999999999999999986 2233 21111 1 3333445556544
Q ss_pred HHHHH---HHHHHhhCCCC--CchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 780 TGKWV---AEKLMALEPFD--SSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 780 ~a~~~---~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.+.+. ........|.. ...-...+.++...|++++|...++.++...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44443 22221111221 1223367778889999999999998887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.1e-05 Score=77.96 Aligned_cols=210 Identities=11% Similarity=0.072 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHH
Q 002460 560 AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYA 639 (919)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 639 (919)
+++.+-..+...++.++|+.++.++++. .|+..| +++....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHH
Confidence 3444555555666677777777766653 344332 1222222333
Q ss_pred HcC-CHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCH--HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHH
Q 002460 640 KCG-NIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNG--EETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSE 712 (919)
Q Consensus 640 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 712 (919)
+.| ++++++..++++. .++..+|+.....+.+.|+. ++++.+++++++ +.| |..+|.....++.+.|++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHH
Confidence 334 4567777766655 23445666655555556653 667888888887 355 55677777777788888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----CHH
Q 002460 713 AYENFHLMREKYGIEPEVEHYSFLVDALGRA---GR----TKEAGELILSM-PFEA-SASMHRALLGACRVQG----DTE 779 (919)
Q Consensus 713 a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~---g~----~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g----~~~ 779 (919)
+++.++.+.+. . .-+...|+....++.+. |. .+++.++..++ ...| |...|+.+.+.+..++ +..
T Consensus 161 eL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 88888888763 1 22345555555444433 22 24566666443 5555 6688999888887743 456
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAA 809 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 809 (919)
+|.....+++..+|+++.+...|+.+|...
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 688888999999999999999999999864
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0058 Score=61.55 Aligned_cols=301 Identities=12% Similarity=0.031 Sum_probs=187.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcc
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMI---FGYILSNNSHKALELFSHMHTSGERLDEITIAT-AVKACGCL 505 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 505 (919)
--+-..+...|++.+|..-|....+-|+..|-++. ..|...|+..-|+.-|.+..+ .+||-..-.. --..+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 34555666677888888888877777777776664 467777887777777777766 4566432211 11233455
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
|.++.|..-|..+++....-. .....+.+.-..++-. .....+..+..+|+...|++....++
T Consensus 120 Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 666666666666665432110 0111111111111110 01123444556777888888887777
Q ss_pred hcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee-----
Q 002460 586 LSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV----- 660 (919)
Q Consensus 586 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----- 660 (919)
+. .+.|...+..-..+|...|.+..|..=+..+.+..-..+...| -+-..+.+.|+.+.++....+..+-|+.
T Consensus 183 Ei-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 183 EI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred hc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 64 2335555555666777778777777666666555544333344 3667777888888888877777643222
Q ss_pred -eehHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--hh---HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 002460 661 -LWNAM---------LVGLAQHGNGEETLKLFEDMKAHGVEPD--SV---TFIGVLSACSYTGLVSEAYENFHLMREKYG 725 (919)
Q Consensus 661 -~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 725 (919)
.|..+ +......+++.++++..+..++. .|. .+ .|..+-.++...|.+.+|++...+.. .
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~ 335 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---D 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---h
Confidence 12111 12345677888888888888774 454 22 34445556778899999999888775 5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 726 IEPE-VEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 726 ~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
+.|+ +.++.--.++|.-...+++|+.-+++.
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6776 888888889999999999999999887
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.2e-05 Score=72.35 Aligned_cols=156 Identities=10% Similarity=0.007 Sum_probs=112.6
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 002460 691 EPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRAL 768 (919)
Q Consensus 691 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~l 768 (919)
.|+......+-.++...|+-+.+..+...... ...-+.+....++....+.|++.+|...+++. +.++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55333225566677778888887777666543 23334556666888888999999999998887 445678888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
..+|-+.|+++.|...+.+++++.|+++.++..|+-.|.-.|+.++|..++......+... ..|-.-|..+......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad---~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD---SRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHhhcCC
Confidence 8889999999999999999999999999999999999999999999998887666544321 3344444444443333
Q ss_pred CCc
Q 002460 849 GGY 851 (919)
Q Consensus 849 ~g~ 851 (919)
.++
T Consensus 218 ~~~ 220 (257)
T COG5010 218 FRE 220 (257)
T ss_pred hHH
Confidence 333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-05 Score=81.64 Aligned_cols=212 Identities=16% Similarity=0.110 Sum_probs=144.1
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHH
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYH 582 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 582 (919)
|++.+|.-.++.+++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.|+
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34444444444444433 34556666666666777776667666665543 456677777788888888889999888
Q ss_pred HHHhcCCC--------CCHhHHHHHHHHHcccccHHHHHHHH-HHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHh
Q 002460 583 QMRLSGVV--------PDEFTFAILVKASSCLTALEQGRQIH-ANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQ 653 (919)
Q Consensus 583 ~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 653 (919)
.-+....+ ++..+-.. ........+....++| +.....+...|..++..|.-.|--.|++++|...|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 87654211 00000000 1122223344445554 4445566567888888899999999999999999998
Q ss_pred CC--C-CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 654 MD--M-RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 654 ~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
.. + .|-..||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|-....
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 76 3 3677899999999999999999999999998 789876 444466678999999999988766543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-05 Score=71.28 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=81.8
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 002460 725 GIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVL 801 (919)
Q Consensus 725 ~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 801 (919)
...|+ ......++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34453 455667777788888888888888876 4344 56677778888888899999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 802 LSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 802 l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
++.+|...|++++|...++...+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987666543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-06 Score=56.90 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=33.1
Q ss_pred eeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh
Q 002460 226 VLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDD 260 (919)
Q Consensus 226 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 260 (919)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00015 Score=71.06 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=117.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHH
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 713 (919)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++.++. .| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888887765554433221 0 122366778888888888874 55 556888899999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002460 714 YENFHLMREKYGIEP-EVEHYSFLVDAL-GRAGR--TKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEK 787 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p-~~~~y~~li~~~-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 787 (919)
...|++... +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998865 456 577888888864 67787 59999999987 5556 567788888889999999999999999
Q ss_pred HHhhCCCCCchHH
Q 002460 788 LMALEPFDSSAYV 800 (919)
Q Consensus 788 ~~~~~p~~~~~~~ 800 (919)
+++++|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=84.04 Aligned_cols=208 Identities=13% Similarity=-0.005 Sum_probs=121.9
Q ss_pred HHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeehHHHHHHHhcCCHH
Q 002460 599 LVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--MRNTVLWNAMLVGLAQHGNGE 676 (919)
Q Consensus 599 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 676 (919)
+...+...|-...|..++.++.. +.-+|.+|+..|+..+|..+..+-. +||...|..+.......--++
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 33444444555555555544322 2234555555555555555444333 234444444444444444445
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILS 755 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~ 755 (919)
+|.++++.-... .-..+..-....++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 555554433221 000000001124555555555554432 333 345566666666677888888887776
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 756 M-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 756 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
. ..+|| ...|+++-.++.++|+-.+|...++++++-+-++...+.+..-+-.+.|.|++|.+.+.++.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4 56775 4578888888888888888888888888888777777777777778888899888888877653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.1e-05 Score=83.53 Aligned_cols=217 Identities=13% Similarity=0.091 Sum_probs=160.2
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 002460 522 GFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVK 601 (919)
Q Consensus 522 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 601 (919)
+++|-......+...+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666677778889999999999999999876 5677788999999999999999988877 4788888888888
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEET 678 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 678 (919)
.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777788888887665332 111122222346788888888876543 2455777777777788888888
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 679 LKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 679 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
.+.|..-.. ..||.. .|+.+-.+|.+.|.-.+|...+.+..+- . .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 888888776 577665 6888888888888888888888777662 3 333444555555667788888888887776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=83.42 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=100.2
Q ss_pred CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 002460 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSF 735 (919)
Q Consensus 658 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 735 (919)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+..++.+.+++++|...+++... ..|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 455666677777788888888888888877 577665 566677778888888888888777754 3454 667777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 002460 736 LVDALGRAGRTKEAGELILSMP-FEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY 799 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 799 (919)
+..++...|++++|.++|++.- ..| +..+|-++..++...|+.+.|..+++++++....-...|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7778888888888888888762 334 356777777788888888888888888887765444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=74.78 Aligned_cols=144 Identities=16% Similarity=0.121 Sum_probs=85.8
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV-LSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVD 738 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~ 738 (919)
.+--....+...|++++|+..++.++.. .||...|..+ ...+...++.++|.+.++++.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3333444455666777777777776663 5655544433 3456666777777777766653 3454 444555666
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 739 ALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
+|.+.|++.+|...++.. ..+-|+..|..|..+|...|+..++..+. +..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 666777777777766665 22235566666777777776655554433 34455567777777
Q ss_pred HHHHHHHhCC
Q 002460 817 SARGEMKRKN 826 (919)
Q Consensus 817 ~~~~~m~~~~ 826 (919)
...+..+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7666666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=74.55 Aligned_cols=182 Identities=12% Similarity=-0.003 Sum_probs=126.4
Q ss_pred CCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCC--CchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-Cee---ee
Q 002460 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSS--DPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTV---LW 662 (919)
Q Consensus 591 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~ 662 (919)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...++++.. | +.. +|
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445567778888999999999999999988765321 123566788999999999999999999863 3 222 45
Q ss_pred hHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002460 663 NAMLVGLAQH--------GNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHY 733 (919)
Q Consensus 663 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 733 (919)
..+..++.+. |+.++|.+.|+++.+. .|+.. ....+..... ... .. . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH-H--------HHH
Confidence 5566666654 7899999999999884 66653 2221111100 000 00 0 112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 734 SFLVDALGRAGRTKEAGELILSM----PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 734 ~~li~~~~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
..+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34667788899999999888776 3333 346788888889999999999998887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0044 Score=77.30 Aligned_cols=186 Identities=9% Similarity=-0.084 Sum_probs=109.7
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC--C----CCCHhHH--HHHHHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDG----FDLATWNAMIFGYILSNNSHKALELFSHMHTSG--E----RLDEITI--ATAVKAC 502 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~t~--~~ll~~~ 502 (919)
.+...|+++.+...++.++. .+..........+...|++++|...+....+.- . .+....- ...-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777887777777642 233333344455567789999998888775431 1 1111111 1122234
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHhccCCC-------CC--hhhHHHHHHHHH
Q 002460 503 GCLLMLKQGKQMHAYAMKSGFELDL----CVSSGILDMYVKCGAMVDAQSIFNDIPA-------PD--DVAWTTMISGCV 569 (919)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~ 569 (919)
...|+++.+...+....+.-...+. ...+.+...+...|++++|...+++... +. ..+++.+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5678999999998887763212221 2345666777889999999888876642 11 224455666788
Q ss_pred HcCChhHHHHHHHHHHhc----CCC--C-CHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 570 DNGEEDLALSIYHQMRLS----GVV--P-DEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
..|++++|...+++.... |.. | ....+..+...+...|++++|...+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 899999999998886542 211 1 11222233333444566666666655543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.011 Score=63.49 Aligned_cols=401 Identities=11% Similarity=0.034 Sum_probs=241.9
Q ss_pred ccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHH
Q 002460 404 PEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG--FD-LATWNAMIFGYILSNNSHKALELF 480 (919)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 480 (919)
.++++.+-..+-..+..... |.+.|..-..+|++.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++++|+.-|
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred cccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 45677777777777776665 889999999999999999998765544333 23 236888888999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcc---CchHHHHHHHHHHHH----hCCCCChhHHHHHHH----------HHHHcCCH
Q 002460 481 SHMHTSGERLDEITIATAVKACGCL---LMLKQGKQMHAYAMK----SGFELDLCVSSGILD----------MYVKCGAM 543 (919)
Q Consensus 481 ~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~----~g~~~~~~~~~~Li~----------~y~~~g~~ 543 (919)
.+-++.. +-|..-++.+..+.... ++.-..-.+|..+.. .+... ...|..++. .|..-.++
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~-~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLS-DPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhc-cHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 9877642 22334445555554111 000000111111100 00000 011111111 11111122
Q ss_pred HHHHHHhccC----------------CCC------------Ch----------hhHHHHHHHHHHcCChhHHHHHHHHHH
Q 002460 544 VDAQSIFNDI----------------PAP------------DD----------VAWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 544 ~~A~~~f~~m----------------~~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
..|.-.+... .+| |. .-.-.+.++.-+..+++.|++-+...+
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222222111 001 00 113345666667778888888888887
Q ss_pred hcCCCCCHhHH-HHHHHHHcccccHHHHHHHHHHHHHcCCCCC------chhhcHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002460 586 LSGVVPDEFTF-AILVKASSCLTALEQGRQIHANLIKLDCSSD------PFVGISLVDMYAKCGNIEDAYILFKQMDMRN 658 (919)
Q Consensus 586 ~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 658 (919)
+.. ...|| +..-.++...|...+........++.|...- ......+...|.+.++++.|...|.+...+-
T Consensus 252 el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 754 33444 4445566777766666555544444432210 0011124457888899999999999865221
Q ss_pred eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 002460 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLV 737 (919)
Q Consensus 659 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 737 (919)
.. -....+....++++...+...- +.|+.. -...-...+.+.|++..|+..|.+++.. -+-|...|+.-.
T Consensus 329 Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRA 399 (539)
T KOG0548|consen 329 RT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRA 399 (539)
T ss_pred cC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 10 1122334455666666665544 455543 2333366788899999999999998874 234588999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 738 DALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
-.|.+.|.+.+|++=.+.. ...|+. ..|.-=..+.....+++.|...+++.++++|++..+-..+.+.+......+..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ 479 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETP 479 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCH
Confidence 9999999999998876664 445543 33433344555667999999999999999999988888888887765444444
Q ss_pred HHHH
Q 002460 816 TSAR 819 (919)
Q Consensus 816 ~~~~ 819 (919)
.++.
T Consensus 480 ee~~ 483 (539)
T KOG0548|consen 480 EETK 483 (539)
T ss_pred HHHH
Confidence 4444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00038 Score=67.87 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=86.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 741 (919)
-.+-..+...|+.+.+..+..+.... .| |......+.......|++.+|...|.+... .-+||.+.|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 33444555556655555555554321 22 222333355555566666666666666654 34445666666666666
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHH
Q 002460 742 RAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 742 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 819 (919)
+.|++++|..-|.+. .+.| ++.+.+.|...+...||.+.|+.++..+....+.|+.+-..|+-+....|+.++|..+-
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666555443 3333 34455566666666666666666666666666666666666666666666666665544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.5e-06 Score=54.12 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCc
Q 002460 120 ISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSR 159 (919)
Q Consensus 120 ~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~ 159 (919)
++||++|.+|++.| ++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~-----~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAG-----RVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCC-----CHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999 999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00071 Score=79.75 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=164.6
Q ss_pred CCH-hHHHHHHHHHhccCchHHHHHHHHHHHHh-CCC---CChhHHHHHHHHHHHcCCHHHHHHHhccCCCC-C-hhhHH
Q 002460 490 LDE-ITIATAVKACGCLLMLKQGKQMHAYAMKS-GFE---LDLCVSSGILDMYVKCGAMVDAQSIFNDIPAP-D-DVAWT 562 (919)
Q Consensus 490 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~ 562 (919)
||. .-|...+.-....++++.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 34556666667777888888887777653 221 11356777777777778888888888887752 2 34678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCC-CCchhhcHHHHHHHHc
Q 002460 563 TMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCS-SDPFVGISLVDMYAKC 641 (919)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~ 641 (919)
.|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++.+.-.. -.+....-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888999999999999999999876 4455567778888888888888888888887775332 1334445567778899
Q ss_pred CCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHH
Q 002460 642 GNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVS 711 (919)
Q Consensus 642 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 711 (919)
|+.+.+..+|+... .+....|+..|..-.++|+.+.+..+|++....++.|-.. .|...|..-...|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999999887 3467899999999999999999999999999998888543 5666666555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.7e-06 Score=53.67 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=32.2
Q ss_pred ceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 002460 225 VVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCP 258 (919)
Q Consensus 225 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (919)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=9e-05 Score=79.45 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=94.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 002460 698 IGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ 775 (919)
Q Consensus 698 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 775 (919)
.+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666677888888888887664 244 3445677777777778888887775 3333 566677677778889
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
++.+.|..+++++.++.|++-.+|..|+.+|...|+|++|....+.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888755
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00053 Score=72.27 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=135.9
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC--
Q 002460 637 MYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHG-NGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGL-- 709 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-- 709 (919)
.+.+.++.++|+.+.+.+... +..+|+.-...+...| ++++++..++++.+. .| +..+|..-...+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchh
Confidence 344567788888888887643 4557777777777777 689999999999985 45 34456655444555565
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HH
Q 002460 710 VSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ---GD----TE 779 (919)
Q Consensus 710 ~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~~ 779 (919)
.+++..+++.+.+ +.| +...|+....++.+.|++++|++.++++ ...| +...|+....+.... |. .+
T Consensus 124 ~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888888875 345 5778888888899999999999999997 3344 677888877666544 22 35
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhc----CCcchHHHHHHHHHh
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAA----NQWDDVTSARGEMKR 824 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m~~ 824 (919)
.+....+++++++|+|..+|..+..++... ++..+|.+......+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 678888899999999999999999999883 455678777766544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00072 Score=79.30 Aligned_cols=234 Identities=9% Similarity=0.085 Sum_probs=153.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHcccccHHHHHHHHHHHHHcCCCCCchhhcHH
Q 002460 556 PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILV-KASSCLTALEQGRQIHANLIKLDCSSDPFVGISL 634 (919)
Q Consensus 556 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 634 (919)
.+...|..|+..|...+++++|.++.++-++ ..|+...+.... ..+.+.+..+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 5677899999999999999999999997666 356665443322 244445554444433 13
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC--CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHH
Q 002460 635 VDMYAKCGNIEDAYILFKQMDM--RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 711 (919)
++...+..++.-...+.+.|.. .+..++-.+..+|-+.|+.++|..+|+++++. .| |....+.+...++.. +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHH
Confidence 3333333333333333333331 23346677888999999999999999999985 46 556788888888888 999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHH
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----------------------PFEASASMHRALL 769 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m----------------------~~~p~~~~~~~ll 769 (919)
+|.+++.+.... |...+++.++.+++.++ ....-..+|--+-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999988887664 22333444444443333 1222233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCC
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKK 829 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 829 (919)
.-|...++++++..+++.+++.+|.|..+..-|+..|. +++.+-..+=+.++-.++..
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 66777889999999999999999999999999998887 66655333333334445443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.5e-05 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.0
Q ss_pred cchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCC
Q 002460 297 VVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQY 330 (919)
Q Consensus 297 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 330 (919)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00036 Score=64.07 Aligned_cols=114 Identities=10% Similarity=0.020 Sum_probs=91.1
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 002460 681 LFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PF 758 (919)
Q Consensus 681 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~ 758 (919)
.+++.++ ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566665 46644 35666777888899999999999998763 2336788888999999999999999998876 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 759 EA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 759 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
.| +...|..+...+...|+.+.|...++++++++|+++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 56778888888899999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00071 Score=65.32 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=135.1
Q ss_pred cCCHHHHHHHHHhCCC--------CC-eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccCCH
Q 002460 641 CGNIEDAYILFKQMDM--------RN-TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV-LSACSYTGLV 710 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~~--------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 710 (919)
..+.++..+++.++.. ++ -..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888888762 12 123455666777889999999999999886 3 654322111 2224567999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002460 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKL 788 (919)
Q Consensus 711 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 788 (919)
++|.++++++.++ -+.|..+|--=+.++-.+|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999875 2345667777677777788888888877665 46678999999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHhhcCCc---chHHHHHHHHH
Q 002460 789 MALEPFDSSAYVLLSNIFAAANQW---DDVTSARGEMK 823 (919)
Q Consensus 789 ~~~~p~~~~~~~~l~~~y~~~g~~---~~a~~~~~~m~ 823 (919)
+=+.|-++..+..|+.++...|-. +-|.+++.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999998877753 44555664443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00098 Score=70.69 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=103.4
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTET 780 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 780 (919)
.+...|..++|...++.+... .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 455678999999999998763 3345777778889999999999999999987 56776 6778888999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 781 GKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 781 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
|+..++....-+|+||..|..|+.+|...|+..+|...+.++...
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888766543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0038 Score=60.45 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=118.7
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeehHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 637 MYAKCGNIEDAYILFKQMDMRNTVLWNAM---LVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
+..-+|+.+.|...++++..+-+.++... ..-+-..|++++|+++++.+++.. +-|.+++.-=+...-..|+--+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 34445666666666666543222222221 122456789999999999999874 33667887777777778888899
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 002460 714 YENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQG---DTETGKWVAEKL 788 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~ 788 (919)
++-+....+ .+..|.+.|.-+.++|...|++++|.-.++++ -..| ++..+..+.......| |.+.|..+++++
T Consensus 140 Ik~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 998888887 46778999999999999999999999999997 3455 5566677777766665 788899999999
Q ss_pred HhhCCCCCchHH
Q 002460 789 MALEPFDSSAYV 800 (919)
Q Consensus 789 ~~~~p~~~~~~~ 800 (919)
++++|.+...+.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 999996655443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=50.49 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=27.3
Q ss_pred eeHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 002460 226 VLWKVMLRAYAENGFGEEVFHLFVDLHRSGL 256 (919)
Q Consensus 226 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 256 (919)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0083 Score=58.66 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCH
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSY----TGLV 710 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 710 (919)
...|...|++++|++.......-+....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34566666666666666653221222111 22334445566666666666552 233455544444332 2344
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 711 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
.+|.-+|++|.++ ..|+..+.+-....|...|++++|+.+++.++.
T Consensus 190 qdAfyifeE~s~k----------------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 190 QDAFYIFEELSEK----------------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhHHHHHHHHhcc----------------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555555555442 334444444444444555555555555555555
Q ss_pred hCCCCCchHHHHHHHHhhcCCcchH
Q 002460 791 LEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 791 ~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
.+|++|.+...+.-.-...|+-.++
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHH
Confidence 5555555555554444445554444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=77.77 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 738 DALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
..+.+.|++++|+++++++ ...| +...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455667777777777665 3344 4456666666677777777788878888888887777777778888888888888
Q ss_pred HHHHHHHHhCCCCCCch-HHHHHHHHHHHHHH
Q 002460 816 TSARGEMKRKNVKKDPA-DLIFAKVEGLIKRI 846 (919)
Q Consensus 816 ~~~~~~m~~~~~~~~~~-~~i~~~l~~l~~~~ 846 (919)
...+++..+.. |+ .++...+.++...+
T Consensus 90 ~~~~~~al~l~----P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLA----PGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 77776555432 32 33444444444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.18 Score=57.87 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=86.5
Q ss_pred HHHHHHHHcccccHHHH---HHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee--eehHH-HHHH
Q 002460 596 FAILVKASSCLTALEQG---RQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV--LWNAM-LVGL 669 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~l-i~~~ 669 (919)
.+.++..|-+.++.... .-+++.-.... +.+..+--.||..|+-.|-+..|.++|+.+..+++. |..-+ ..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 44566777777766532 22233222221 233334456788888889999999999988754332 22222 3344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHH---HHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 670 AQHGNGEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYE---NFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~---~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
...|++..+...+++...- ..-+. .|--.+..||. .|.+.+..+ +-+++... .-.....+-+..++.+...++
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 5567777777766665541 01111 12222333333 344443333 22333221 111123344566777888888
Q ss_pred HHHHHHHHHhCCCCC
Q 002460 746 TKEAGELILSMPFEA 760 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p 760 (919)
.++-...+..|..+|
T Consensus 595 ~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP 609 (932)
T ss_pred HHHHHHHHhccccCc
Confidence 888888888886444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00075 Score=72.50 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHH
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 711 (919)
+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++.++. .| |......-...|...++.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHH
Confidence 45666667889999999999999888777778888898899999999999999874 45 4445555566788999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 002460 712 EAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMPFEA 760 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p 760 (919)
.|.++.+++.+ ..|+ ..+|..|+..|...|++++|+..++.+|+.|
T Consensus 252 lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 252 LALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999875 4675 6799999999999999999999999998554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=60.28 Aligned_cols=113 Identities=21% Similarity=0.165 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCC
Q 002460 672 HGNGEETLKLFEDMKAHGVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE--VEHYSFLVDALGRAGR 745 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~r~g~ 745 (919)
.++...+...++++.+. .|+. .....+...+...|++++|...|+..... ...|. ......|..++...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 56666666666666664 2332 12333344566666666666666666654 22222 1233345555666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002460 746 TKEAGELILSMPFEA-SASMHRALLGACRVQGDTETGKWVAEK 787 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 787 (919)
+++|+..++..+..+ .+..+.....++...|+.++|+..+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665542221 223333444444555555555555444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00026 Score=70.31 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=53.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 739 ALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
-+.+.+++++|+..+.++ .+.| |++.|..-..+|.+-|.++.|.+-.+.++.++|....+|-.|+.+|...|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 344555666666666554 4444 44445555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCCCchHHHH
Q 002460 817 SARGEMKRKNVKKDPADLIF 836 (919)
Q Consensus 817 ~~~~~m~~~~~~~~~~~~i~ 836 (919)
+.| ++++..+|..+.|
T Consensus 170 ~ay----kKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 170 EAY----KKALELDPDNESY 185 (304)
T ss_pred HHH----HhhhccCCCcHHH
Confidence 655 2444555554444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=57.94 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC-CcchHHHHHHHHHh
Q 002460 761 SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN-QWDDVTSARGEMKR 824 (919)
Q Consensus 761 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 824 (919)
++.+|..+...+...|++++|+..++++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999998876543
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=61.69 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=92.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA----SMHRALLG 770 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~ 770 (919)
|..++.+. ..++.+.+...++.+..+++-.| .....-.+...+...|++++|...++.. ...|+. ..+..|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 47889999999999988644332 1344555778888999999999999987 223443 34555677
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
.+...|++++|...++.. .-.+-.+..+.+++++|.+.|++++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788899999999999763 33444566788999999999999999999864
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00045 Score=58.33 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 810 (919)
+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888875 3344 33567777777788899999999999999999988888889999999999
Q ss_pred CcchHHHHHHHHHh
Q 002460 811 QWDDVTSARGEMKR 824 (919)
Q Consensus 811 ~~~~a~~~~~~m~~ 824 (919)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888876553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.3e-05 Score=48.78 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=27.9
Q ss_pred chhhhHhHhhhhcCChhhHHHHHHHHHhhcC
Q 002460 298 VLWNKKLSGYLQVGDNHGAIECFVNMIRSNV 328 (919)
Q Consensus 298 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 328 (919)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.12 Score=54.33 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=81.6
Q ss_pred cHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHH
Q 002460 632 ISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 632 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 711 (919)
+.-|.-+...|+...|.++-.+..-||-.-|...+.+|+..+++++-.++... +-.++.|-..+.+|...|..+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778888999998888888888899999999999998876665432 223477888888888899998
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
+|..+...+ .+.--+.+|.+.|.+.+|.+.--+.
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888887653 1245677888899998887775543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.4e-05 Score=62.23 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHH
Q 002460 743 AGRTKEAGELILSM-PFEA---SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSA 818 (919)
Q Consensus 743 ~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 818 (919)
.|++++|+.+++++ ...| +...|..+..++...|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777665 2222 455666677777788888888888887 777777777777788888888888888888
Q ss_pred HHH
Q 002460 819 RGE 821 (919)
Q Consensus 819 ~~~ 821 (919)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=59.18 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 002460 735 FLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFD---SSAYVLLSNIF 806 (919)
Q Consensus 735 ~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 806 (919)
.++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...+++++...|++ +.++..++.+|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444455555555554443 11121 1233334444555555555555555555555543 23445555555
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 002460 807 AAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 807 ~~~g~~~~a~~~~~~m~~~ 825 (919)
...|++++|...++.+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=58.00 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALL 769 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll 769 (919)
++..+...+...|++++|.+.|+.+...+.-.| ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555566667777777777777765422111 1345556777777777888777777765 22232 44566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
.++...|+.+.|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7778888888888888888888887665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.005 Score=60.12 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 002460 680 KLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFE 759 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~ 759 (919)
++.+.+.......|......-...|++.|++++|.+..+.. -+.+....=+..+.|..+++-|.+.+++|..-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455554434444444444455699999999999887652 34555556677788999999999999999655
Q ss_pred CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 760 ASASMHRALLGACRVQ----GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 760 p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
.+..+...|..++.+. +.+..|-.+++.+-+.-|..+......+.++...|+|++|..+++...++.-
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 5666777777766433 4688899999999997777888999999999999999999999998877653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.022 Score=67.25 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.9
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002460 456 DLATWNAMIFGYILSNNSHKALELFSHMHT 485 (919)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (919)
+...|..|+..|...+++++|.++.+...+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 556788888888888888888888886655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0024 Score=58.40 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=86.6
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcch
Q 002460 737 VDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDD 814 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 814 (919)
..-+-.+|++++|..+|+-+ -..| +...|..|...|...++++.|...+..+..++++||.++...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445789999999999876 2233 566788888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 815 VTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 815 a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
|...|+...++ .-..++.++...+.+.+++
T Consensus 124 A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 124 ARQCFELVNER----TEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHHHhC----cchHHHHHHHHHHHHHHHc
Confidence 99999888763 1125566666666665553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00024 Score=55.34 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 768 LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 768 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566778888888888888888888888888888888888888888887776654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.12 Score=53.54 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=151.8
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHH
Q 002460 570 DNGEEDLALSIYHQMRLSGVVPDEF--TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 647 (919)
-.|++++|.+-|+.|... |... -+..|.-.--+.|+.+.|.++-...-.... .-.-...+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHH
Confidence 357777777777777642 2111 122233333456677777666655544321 1233556678888888888888
Q ss_pred HHHHHhCC-----CCCee--eehHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHH
Q 002460 648 YILFKQMD-----MRNTV--LWNAMLVGLA---QHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 648 ~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 716 (919)
+++.+.-. ++++. .-..|+.+-+ -.-+...|...-.+..+ +.||-+ .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 88887654 33332 1222333222 12345566666555555 678866 344456678999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 717 FHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 717 ~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
++.+- ..+|.+..+...+ +.|.|+... +-+++. .++|| .....++..+....|++..|..-++.+...
T Consensus 286 lE~aW---K~ePHP~ia~lY~--~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAW---KAEPHPDIALLYV--RARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHH---hcCCChHHHHHHH--HhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99995 4567776665444 345664332 222221 34564 455566677778889999999999999999
Q ss_pred CCCCCchHHHHHHHHhhc-CCcchHHHHHHHHH
Q 002460 792 EPFDSSAYVLLSNIFAAA-NQWDDVTSARGEMK 823 (919)
Q Consensus 792 ~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~ 823 (919)
.|. ..+|.+|+.+-... |+-.++.....+..
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 995 77899999997766 98888877665443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0042 Score=59.61 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=70.9
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD--SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFL 736 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 736 (919)
..+..+...|...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3455555666666666666666666665322221 234555555666666666666666665542 23 24444455
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 002460 737 VDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 811 (919)
..+|...|+...+..-++.. ...++.|..+++++++++|++ |..+.+.+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55555555544443322211 012566778888888887765 5555566655554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0036 Score=70.66 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=26.6
Q ss_pred CCCeeeehHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChh-HHHHH
Q 002460 656 MRNTVLWNAMLVGLAQH-----GNGEETLKLFEDMKAHGVEPDSV-TFIGV 700 (919)
Q Consensus 656 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 700 (919)
..|..+|...+.+.... ++.++|..+|++.++ ..||.. .+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~l 382 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEK 382 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 34556666666664332 236688888998888 578754 34433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0044 Score=62.34 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=91.0
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCCchHH
Q 002460 727 EP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ---GDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 727 ~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
.| |.+.|-.|...|.+.|+.+.|..-|.+. .+.| ++.++..+..++... .+..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35 6899999999999999999999999887 4444 667777777776544 2578899999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 801 LLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 801 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
.|+-.+...|++.+|...++.|.+..-.-+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999887666665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0004 Score=54.69 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=44.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
...|+++.|...++++++.+|+++.+...|+.+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999998864443
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00016 Score=47.29 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=30.5
Q ss_pred HHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 785 AEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 785 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=64.14 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCH
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRT 746 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~ 746 (919)
..+.+++++|+..|.+.++ +.| |.+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 3444555555555555555 344 23333334444555555555554444332 23333 34444444444444444
Q ss_pred HHHHHHHHhC-CCCCC
Q 002460 747 KEAGELILSM-PFEAS 761 (919)
Q Consensus 747 ~eA~~~~~~m-~~~p~ 761 (919)
++|++.|++. .+.|+
T Consensus 166 ~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHhhhccCCC
Confidence 4444444443 34443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=61.92 Aligned_cols=92 Identities=11% Similarity=-0.043 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.++|...++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888776 23232 3478888888999999999999999999999999999999999
Q ss_pred HHh-------hcCCcchHHHHHHH
Q 002460 805 IFA-------AANQWDDVTSARGE 821 (919)
Q Consensus 805 ~y~-------~~g~~~~a~~~~~~ 821 (919)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 998 77888766665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=61.44 Aligned_cols=83 Identities=14% Similarity=0.027 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
...|..+...+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334555666666667777777766654 22221 3567777778888899999999999999999999888889999
Q ss_pred HHhhcCCc
Q 002460 805 IFAAANQW 812 (919)
Q Consensus 805 ~y~~~g~~ 812 (919)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 99887773
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.39 Score=51.03 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 748 EAGELILSMPFEA----SASMHRALLGA--CRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 748 eA~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
+-+.++++.++.| +..+-+.|..| ...+|++.++.-...-+.++.| .+.+|.++|-......++++|.+++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666666555 34566777776 4788999999999999999999 89999999999999999999999995
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.007 Score=62.74 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=122.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChhH------------
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLS--ACSYTGLVSEAYENFHLMREKYGIEPEVEH------------ 732 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------ 732 (919)
.++...|++++|.+.--..++. .++. .+..++. ++-..++.+.|...|++.. .+.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 3566778888888877766653 2321 1222222 3445677788888887764 34454221
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 002460 733 -YSFLVDALGRAGRTKEAGELILSM-PFEA-----SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNI 805 (919)
Q Consensus 733 -y~~li~~~~r~g~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 805 (919)
+..=.+-..+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+.++|..--+.+++++|.-..+|..-++.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111223456889999999999886 4444 455666666677888999999999999999999989999999999
Q ss_pred HhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhCCcccC
Q 002460 806 FAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKEGGYVPD 854 (919)
Q Consensus 806 y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~p~ 854 (919)
|...++|++|.+-++...+.... .+|...|.+....+++..-++.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s----~e~r~~l~~A~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD----CEIRRTLREAQLALKKSKRKDW 375 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHhhhhhH
Confidence 99999999999998876654333 3455566666655655444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=55.19 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHh
Q 002460 228 WKVMLRAYAENGFGEEVFHLFVDLHRSGL-CPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSG 306 (919)
Q Consensus 228 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~ 306 (919)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.... .
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD-----------------------------~ 78 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELD-----------------------------S 78 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcccc-----------------------------c
Confidence 34456677777999999999999999999 89999999998887765531 1
Q ss_pred hhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcC
Q 002460 307 YLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAG 344 (919)
Q Consensus 307 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 344 (919)
..-.++.-+.+.++++|...+++|+..||+.++..+.+
T Consensus 79 ~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 79 EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 12223455678899999999999999999999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00083 Score=52.30 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 002460 736 LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 796 (919)
+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999987 5556 556888888899999999999999999999999875
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00087 Score=53.64 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999988777554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0046 Score=66.89 Aligned_cols=103 Identities=19% Similarity=0.083 Sum_probs=73.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTE 779 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 779 (919)
.+...|++++|+++|+.+.+ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34556777777777777764 234 3566667777777778888887777775 4445 4566777777888889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 808 (919)
.|+..++++++++|+++.....+..+...
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999888877766555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0078 Score=62.70 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=101.5
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA-CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
+|-.++....+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57778888888888999999999998542 2244455554444 44467777899999999985 44567778889999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 740 LGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+.+.|+.+.|..+|++. ..-|. ..+|...+.--..+|+.+....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999986 32333 359999999999999999999999999999987443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.28 Score=51.68 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc
Q 002460 529 VSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA 608 (919)
Q Consensus 529 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 608 (919)
+.+..+.-+...|+...|.++-.+..-||-.-|-..|.+|+..+++++-.++-.. +-.++.|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999888889999999999999999999887765432 2234788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 88888777651 224578899999999988766
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0047 Score=51.87 Aligned_cols=61 Identities=26% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 333444444444444444444432 1112 223444455555555555556555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.07 Score=49.30 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=75.7
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHH
Q 002460 690 VEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIE-PEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA---SASM 764 (919)
Q Consensus 690 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p---~~~~ 764 (919)
+-|...--..|..+....|+..||...|++... |+- -|....-.+.++...-++..+|...++++ ...| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345555555566666667777777777666655 333 34555555566666666677776666664 2112 1222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 765 HRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 765 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.-.+...+...|..+.|+..++.++..-| ++..-...+..++++|+.++|..-+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 33445556666777777777777777666 45555566666777776666654443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.03 Score=51.62 Aligned_cols=109 Identities=24% Similarity=0.223 Sum_probs=94.3
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 718 HLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM---PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 718 ~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
.+..++..+.|++.+--.|...+.+.|+..||...+++. ++.-|+.+.-.+..+...-++...|...++++.+.+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 334444577899999999999999999999999999986 46668888889999999999999999999999999885
Q ss_pred --CCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 795 --DSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 795 --~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.|....+++.+|...|++.+|...++-..+.-
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 57788899999999999999999988776553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.32 Score=50.46 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=173.0
Q ss_pred hHHHHHHHHHH--cCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHc--ccccHHHHHHHHHHHHHcCCCCCchhh--cH
Q 002460 560 AWTTMISGCVD--NGEEDLALSIYHQMRLSGVVPDEFTFAILVKASS--CLTALEQGRQIHANLIKLDCSSDPFVG--IS 633 (919)
Q Consensus 560 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 633 (919)
-|.+|-.|+.. .|+...|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|+-|... |..... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34555555544 45666666655554322 4456666666766544 469999999999988762 332222 12
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh--HHHHHHHHHhc-
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSV--TFIGVLSACSY- 706 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 706 (919)
|.-.--+.|..+.|...-++.-. | -.-.|.+.+...+..|+++.|+++.+.-.+.. +.+|.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333467888888888777653 2 34478889999999999999999999876643 456654 23334443211
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002460 707 --TGLVSEAYENFHLMREKYGIEPEVE-HYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 707 --~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
..+...|...- .+...+.|+.. .-..-..+|.+.|++.++-.+++.+ +.+|.+.+|..+. ..+.|+.....
T Consensus 240 ~ldadp~~Ar~~A---~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDA---LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHH---HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHH
Confidence 12344444332 23346788743 3334457889999999999999998 7788888876654 34667654433
Q ss_pred -HHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHH
Q 002460 783 -WVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKV 839 (919)
Q Consensus 783 -~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l 839 (919)
+-++++.++.|+|......++..-...|++..|..--+.. ....|.+.+|-.|
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa----~r~~pres~~lLl 368 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA----AREAPRESAYLLL 368 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH----hhhCchhhHHHHH
Confidence 4466778899999999999999988999988776544322 2334555555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=66.29 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=94.9
Q ss_pred CCCChhHHHHHHHHHhc--cC---CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHh
Q 002460 690 VEPDSVTFIGVLSACSY--TG---LVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRA--------GRTKEAGELILS 755 (919)
Q Consensus 690 ~~p~~~t~~~ll~a~~~--~g---~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~--------g~~~eA~~~~~~ 755 (919)
...|...|...+.+... .+ ..+.|..+|++..+ ..|+ ...|..+..++... +++.++.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34566788888887543 33 36789999999875 5787 45555544433221 234455555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 756 M---P-FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 756 m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
. + ...++.++.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|.+.+++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 2 233556777777777778999999999999999999 588999999999999999999999876543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.028 Score=53.63 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD--SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFL 736 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 736 (919)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++..... .|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHH
Confidence 3556666667777777777777777766422221 235666667777777777777777776542 332 4445555
Q ss_pred HHHHh
Q 002460 737 VDALG 741 (919)
Q Consensus 737 i~~~~ 741 (919)
..++.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.003 Score=60.19 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=86.4
Q ss_pred HHHHhcC--CCCCceeHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHH
Q 002460 214 KFLFDGM--QERDVVLWKVMLRAYAEN-----GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAI 286 (919)
Q Consensus 214 ~~~f~~m--~~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 286 (919)
...|+.. ..+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+-+.... .
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv-p-------- 104 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV-P-------- 104 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc-c--------
Confidence 4455554 446677777777777653 67777888889999999999999999998887653221 0
Q ss_pred HHhhhcCCCCcchhhhHhHhhh--hcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCC-hhHHHHHHHHHHH
Q 002460 287 KLLLYNNNSNVVLWNKKLSGYL--QVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDN-LNLGQQIHGTTLK 360 (919)
Q Consensus 287 ~~~~~~~~~~~~~~n~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~ 360 (919)
.+++++-. .-.+-+-|++++++|...|+.||..|+..+++.+++.+. .....++.-+|.+
T Consensus 105 --------------~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 105 --------------RNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred --------------ccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111111 123457789999999999999999999999999998775 3444444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.052 Score=56.80 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHhc
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQH-GNGEETLKLFEDMKAH----GVEPD--SVTFIGVLSACSY 706 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~ 706 (919)
.++.|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .+. ..++..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455666666665555433 33444444 5666666666655442 1 111 1133444444555
Q ss_pred cCCHHHHHHHHHHhHH
Q 002460 707 TGLVSEAYENFHLMRE 722 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~ 722 (919)
.|++++|.++|++...
T Consensus 168 l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAK 183 (282)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0012 Score=51.92 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 743 AGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 743 ~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.|++++|+++++++ ...| +..++..+..++...|++++|+..++++...+|+++..+.++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44455555554443 2222 334444444445555555555555555555555444444333
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0071 Score=65.42 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=86.1
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHhcCCC-C-----CceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHH
Q 002460 192 WDEFVSGALVNIYSKFGKIREAKFLFDGMQE-R-----DVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQC 265 (919)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~-----~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (919)
.+......+++......+++++..++-+... | -..|..++|+.|.+.|..++++++++.=...|+-||.+|++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444455556666666666777766655443 2 123456888899999999999999988888888888777666
Q ss_pred HHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCC
Q 002460 266 VLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGT 345 (919)
Q Consensus 266 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 345 (919)
+ |..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 144 L-------------------------------------md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 L-------------------------------------MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred H-------------------------------------HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6 888888888999999988888887777788887777777654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0092 Score=60.95 Aligned_cols=88 Identities=8% Similarity=0.041 Sum_probs=43.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHhh
Q 002460 737 VDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFD---SSAYVLLSNIFAA 808 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~ 808 (919)
+..+.+.|++++|...|+.. ...|+ +..+.-+..++...|+++.|...++++++..|++ +.++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33333445555555444443 11221 1233344445555566666666666666555543 3334444555666
Q ss_pred cCCcchHHHHHHHHHh
Q 002460 809 ANQWDDVTSARGEMKR 824 (919)
Q Consensus 809 ~g~~~~a~~~~~~m~~ 824 (919)
.|++++|.++++...+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0038 Score=51.54 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 002460 672 HGNGEETLKLFEDMKAHGVE-PDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA 749 (919)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. ...|. ......+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46777777777777774221 13334444677777777777777777662 22232 23333446667777777777
Q ss_pred HHHHHh
Q 002460 750 GELILS 755 (919)
Q Consensus 750 ~~~~~~ 755 (919)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.021 Score=53.08 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=72.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEP--EVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETG 781 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 781 (919)
....|+.+.+...++.+..-|.-.+ +... ..........++++- ...+..++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456777777777777766442221 1111 111222222222221 23455677778899999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH-----hCCCCCCch
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK-----RKNVKKDPA 832 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 832 (919)
...+++++..+|-|...|..|..+|...|+..+|.++++.++ +.|+.|.|.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 999999999999999999999999999999999999987764 357765543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.079 Score=51.74 Aligned_cols=168 Identities=14% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHhccCC--CCChh--------hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHH
Q 002460 530 SSGILDMYVKCGAMVDAQSIFNDIP--APDDV--------AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAIL 599 (919)
Q Consensus 530 ~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 599 (919)
+++|...|.-...+++-...|+.-. +..+. .-+.++..+.-.|.+.-.+.++++.++...+.+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 4566666665555555555555433 22333 3356777777788888999999999998777788888889
Q ss_pred HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcH-----HHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHh
Q 002460 600 VKASSCLTALEQGRQIHANLIKLDCSSDPFVGIS-----LVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQ 671 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 671 (919)
.+.-.+.|+.+.|...++...+..-..+....+. ....|.-+.++.+|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 9999999999999999998877544444444433 33456667889999999988874 466677776666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 002460 672 HGNGEETLKLFEDMKAHGVEPDSVTFIG 699 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 699 (919)
.|+..+|++..+.|.+ ..|...+-.+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 8999999999999998 4565554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.024 Score=61.40 Aligned_cols=120 Identities=12% Similarity=0.096 Sum_probs=84.6
Q ss_pred CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC----CChhh
Q 002460 487 GERLDEITIATAVKACGCLLMLKQGKQMHAYAMKS--GFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA----PDDVA 560 (919)
Q Consensus 487 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~ 560 (919)
+.+.+...+..+++.+....+++.++.++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667777888888888888888888777766654 2223344556777777777777777777765443 67777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccc
Q 002460 561 WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCL 606 (919)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 606 (919)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777776666767766666655544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0049 Score=48.55 Aligned_cols=65 Identities=25% Similarity=0.142 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 002460 729 EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQG-DTETGKWVAEKLMALEP 793 (919)
Q Consensus 729 ~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 793 (919)
+...|..+...+.+.|++++|+..|++. ...| ++.+|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456778888888899999999888876 4455 4567888888888989 79999999999999988
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.8 Score=49.16 Aligned_cols=108 Identities=24% Similarity=0.242 Sum_probs=84.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHH
Q 002460 632 ISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 632 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 711 (919)
+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .++-|.-...+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3344556678999999999999999999999999999999999887666554432 2566777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILS 755 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~ 755 (919)
||.+++.+... +.-.+.+|.+.|++.+|.++--+
T Consensus 762 EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99998765521 11568899999999999887644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.026 Score=51.54 Aligned_cols=89 Identities=8% Similarity=0.008 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccC
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTG 708 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 708 (919)
.+...+...|++++|.++|+-... -+..-|-.|..++...|++++|+..|..... +.| |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 355666778888888888887653 3556778888888888888888888888887 455 4457777888888888
Q ss_pred CHHHHHHHHHHhHHh
Q 002460 709 LVSEAYENFHLMREK 723 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~ 723 (919)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0039 Score=43.84 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
.+|..+..++...|++++|+.+++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888899999999999999999999999999999888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0084 Score=64.13 Aligned_cols=63 Identities=16% Similarity=0.020 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA---YVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+..|..+..++...|++++|...++++++++|+++.+ |..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554432 55555555555555555555444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.028 Score=47.51 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCHhHHHHHHHHHcccc--------cHHHHHHHHHHHHHcCCCCCchhhc
Q 002460 562 TTMISGCVDNGEEDLALSIYHQMRLSGV-VPDEFTFAILVKASSCLT--------ALEQGRQIHANLIKLDCSSDPFVGI 632 (919)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 632 (919)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+...+++.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877653 3445677889999999999999999
Q ss_pred HHHHHHHH
Q 002460 633 SLVDMYAK 640 (919)
Q Consensus 633 ~li~~y~~ 640 (919)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.49 E-value=2.5 Score=49.09 Aligned_cols=419 Identities=13% Similarity=0.081 Sum_probs=208.7
Q ss_pred CcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHH
Q 002460 296 NVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLIN 375 (919)
Q Consensus 296 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 375 (919)
|..|...+-..|...|+.++|..++++.... -|+..-...+..++.+.+++..-+++-=++.+ .+.-+...+-+.++
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVIS 152 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHH
Confidence 4445555577788888999999999887654 46677777778888888777665544333333 23334455555555
Q ss_pred HhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhc---
Q 002460 376 MYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKND-TVADSFVSTALIDVYCRNGSMAEAEYLFEN--- 451 (919)
Q Consensus 376 ~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~~f~~--- 451 (919)
.+...-.- |+.... .-.+..++.+.+.+++.+ ...+..-.-.-...+...|++++|..++..
T Consensus 153 lilqs~~~----~~~~~~----------~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la 218 (932)
T KOG2053|consen 153 LILQSIFS----ENELLD----------PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA 218 (932)
T ss_pred HHHHhccC----Cccccc----------chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 55443311 110000 112345666677776655 333333333344556678899999998843
Q ss_pred --CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH----HHhc------------cCchHHHHH
Q 002460 452 --KDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVK----ACGC------------LLMLKQGKQ 513 (919)
Q Consensus 452 --~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~------------~~~~~~a~~ 513 (919)
...-+...-|--+.-+...+++.+..++-.++...| +|. |...+. ..-. .+.++...+
T Consensus 219 ~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~e 294 (932)
T KOG2053|consen 219 EKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIE 294 (932)
T ss_pred HhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHH
Confidence 233344445556677788888988888888888776 332 222221 1111 111111111
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHH---HHcCCHHHHHHHh-c---cCCC--CChhh---------HHHHHHHHHHcCCh-
Q 002460 514 MHAYAMKSGFELDLCVSSGILDMY---VKCGAMVDAQSIF-N---DIPA--PDDVA---------WTTMISGCVDNGEE- 574 (919)
Q Consensus 514 ~~~~~~~~g~~~~~~~~~~Li~~y---~~~g~~~~A~~~f-~---~m~~--~~~~~---------~~~li~~~~~~g~~- 574 (919)
.....+... ....+-+-+..+ -.-|+.+++...| + .++. .|... ...++.++....+.
T Consensus 295 k~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~ 371 (932)
T KOG2053|consen 295 KAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDS 371 (932)
T ss_pred HHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcc
Confidence 111111110 111222333333 3447777764433 2 2221 12222 23344444333222
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc-----HHHHHHHHHHH---HHc------CCCCCch---------hh
Q 002460 575 DLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA-----LEQGRQIHANL---IKL------DCSSDPF---------VG 631 (919)
Q Consensus 575 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~---~~~------~~~~~~~---------~~ 631 (919)
.++.+.+.+- ..++..-...|. -+.-..++... ... ++.|+.. +-
T Consensus 372 s~~~k~l~~h------------~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 372 SGDEKVLQQH------------LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred hhhHHHHHHH------------HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 1222222111 001110001110 01111111110 111 2222222 23
Q ss_pred cHHHHHHHHcCCHH---HHHHHHHhCCCCCee---eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 632 ISLVDMYAKCGNIE---DAYILFKQMDMRNTV---LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 632 ~~li~~y~~~g~~~---~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
+.|++++-+.++.. +|+-+++.....+.. +=-.+|..|.-.|-...|.++|+.|--..|+-|...|.. ..-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHH
Confidence 56788888887765 555566655544333 334577888888888888888888876667777665543 33445
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 002460 706 YTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELI 753 (919)
Q Consensus 706 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~ 753 (919)
..|++..+...++....-|+- --.++-.++..+| |.|.+.+..++.
T Consensus 519 t~g~~~~~s~~~~~~lkfy~~-~~kE~~eyI~~AY-r~g~ySkI~em~ 564 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLKFYDS-SLKETPEYIALAY-RRGAYSKIPEML 564 (932)
T ss_pred hcccchhHHHHHHHHHHHHhh-hhhhhHHHHHHHH-HcCchhhhHHHH
Confidence 567777777776665442110 1122233333333 566666555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0086 Score=47.77 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=52.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 738 DALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.+|.+.+++++|.+.++++ ...| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5678899999999999887 4555 456777777788889999999999999999999877665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.014 Score=60.37 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHL---MREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-------PF-EASAS 763 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-------~~-~p~~~ 763 (919)
.|..|.+.|.-.|+++.|+...+. +.+.||-... ...+..+.+.+.-.|+++.|.+.++.. +. .-.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666677888888876543 2233454432 556778888888889999998888764 11 11334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALE------PFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
...+|.++|..-.+++.|+.+..+-+.+. -....++..|+++|...|..++|....+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56678888888888888888776655432 1235578999999999999999987765544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.27 Score=52.31 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=94.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC---Ceee----ehHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDMR---NTVL----WNAMLVGLAQ---HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA 703 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 703 (919)
|+-.|....+++.-.++.+.+... +... --...-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344566666777777777766632 1111 1122334445 77888888888886665556777777766665
Q ss_pred Hhc---------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----CCCC--
Q 002460 704 CSY---------TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTK----EAGELI---LS-M----PFEA-- 760 (919)
Q Consensus 704 ~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~----eA~~~~---~~-m----~~~p-- 760 (919)
|-. ....++|+..|.+. +.+.|+..+--.++-++..+|... +..++. .. . ...+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 421 22467788777766 456676544434444444444322 222222 11 1 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 761 SASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 761 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+.-...+++.++.-.||.+.|..++++++.+.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3344567888999999999999999999998765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.064 Score=47.19 Aligned_cols=91 Identities=25% Similarity=0.261 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHh
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALG 741 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~ 741 (919)
+..++-..|+.++|+.+|++.++.|+.... ..+..+.+.+...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677888999999999999888866643 3677788888899999999999988877532211 1222233445677
Q ss_pred hcCCHHHHHHHHHh
Q 002460 742 RAGRTKEAGELILS 755 (919)
Q Consensus 742 r~g~~~eA~~~~~~ 755 (919)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877644
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.57 Score=51.70 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=87.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 002460 414 HVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI 493 (919)
Q Consensus 414 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (919)
+..+.++|-.|+... +.+.++-.|++.+|-++|.+ +|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 345566777777654 34556667888999888864 35556666666665421
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCC
Q 002460 494 TIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGE 573 (919)
Q Consensus 494 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 573 (919)
-...-+...|+.++-+.+...-... .-++.--.+-..++...|+.++|..+. ..+|.
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 0111222233333333222211110 001111122344455566666555442 23333
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHh
Q 002460 574 EDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQ 653 (919)
Q Consensus 574 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 653 (919)
.+-++++-+++-. .+..++..+..-+-+...+..|-+||..+-.. ..++++....+++.+|..+-++
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 4444444333321 12233333333344445555566666554322 1366677777777777777777
Q ss_pred CCC
Q 002460 654 MDM 656 (919)
Q Consensus 654 ~~~ 656 (919)
.++
T Consensus 799 hPe 801 (1081)
T KOG1538|consen 799 HPE 801 (1081)
T ss_pred Ccc
Confidence 664
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.031 Score=53.50 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=75.1
Q ss_pred HHHHhC--CCCCeeeehHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC-------------
Q 002460 649 ILFKQM--DMRNTVLWNAMLVGLAQ-----HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTG------------- 708 (919)
Q Consensus 649 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------- 708 (919)
..|+.. ..+|..+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566667777776664 4677778888899999999999999999999865421
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 709 ---LVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 709 ---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
.-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 24679999999988 5999999999999999998874
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.054 Score=47.67 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=49.4
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHhhc
Q 002460 738 DALGRAGRTKEAGELILSM---PFEAS--ASMHRALLGACRVQGDTETGKWVAEKLMALEPF---DSSAYVLLSNIFAAA 809 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~ 809 (919)
.++-..|+.++|+.++++. ..... ...+-.+.++++..|++++|..++++.++-.|+ +......++-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444556666666666553 11111 224445566667777777777777777776666 555556666677777
Q ss_pred CCcchHHHHH
Q 002460 810 NQWDDVTSAR 819 (919)
Q Consensus 810 g~~~~a~~~~ 819 (919)
|++++|.+.+
T Consensus 89 gr~~eAl~~~ 98 (120)
T PF12688_consen 89 GRPKEALEWL 98 (120)
T ss_pred CCHHHHHHHH
Confidence 7777777654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.13 Score=53.80 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C--CHHH
Q 002460 696 TFIGVLSACSYT-GLVSEAYENFHLMREKYGIEPE----VEHYSFLVDALGRAGRTKEAGELILSMP---FE-A--SASM 764 (919)
Q Consensus 696 t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~r~g~~~eA~~~~~~m~---~~-p--~~~~ 764 (919)
.+..+...|... |++++|.++|+...+-|..... ...+.-+..++.+.|++++|.+++++.. .. + ...+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999988775433332 4566778889999999999999998761 11 1 1122
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 765 HRALLG---ACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 765 ~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
-..++. .+...||...|...+++..+.+|.-..+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 222222 3455689999999999999999865443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.4 Score=48.93 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
-.+++...|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+.+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 455666677777766552 334444444444444322 1233444444444455555666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH----HHH-------HHHHHHHhcCCHHHH
Q 002460 714 YENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP-FEASAS----MHR-------ALLGACRVQGDTETG 781 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~-~~p~~~----~~~-------~ll~~~~~~g~~~~a 781 (919)
.++|.+|-+ ...++++....++++||..+-++.| +.||.. -|- -.-.++.+.|+..+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 677766643 2346677777777777777777764 344432 111 112345566777777
Q ss_pred HHHHHHHHh
Q 002460 782 KWVAEKLMA 790 (919)
Q Consensus 782 ~~~~~~~~~ 790 (919)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 777777653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=2 Score=48.08 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=117.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC-----CeeeehHHHHHHHhcCCHHHHHHH
Q 002460 607 TALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR-----NTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
|.+++|++++-.+-++.+ -|.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666544444332 466777888888777777664422 134678888888777778888777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 002460 682 FEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEAS 761 (919)
Q Consensus 682 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~ 761 (919)
|..-... ...+.++.+..++++-..+-.. ++-+....-.|.+++.+.|.-++|.+.+-+-.. |.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pk 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PK 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cH
Confidence 7653221 1245555555555555444333 334566677788899999999999888776642 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKL-------------MALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
+.+..|...+++.+|.+++++. -++-. .....--...+.++|+.-+|.++...|.++..+
T Consensus 883 -----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~--~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 883 -----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLA--DANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh--hcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2344566666666666555432 11111 112233445688899999999998888765444
Q ss_pred C
Q 002460 829 K 829 (919)
Q Consensus 829 ~ 829 (919)
|
T Consensus 956 K 956 (1189)
T KOG2041|consen 956 K 956 (1189)
T ss_pred c
Confidence 3
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.037 Score=57.71 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 002460 695 VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGR-AGRTKEAGELILSM--PFEASASMHRALLGA 771 (919)
Q Consensus 695 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r-~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~ 771 (919)
.+|..++..+.+.+..+.|..+|....+. -.-+...|.....+-.+ .++.+.|..+|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888899999999999753 22234555555555334 56666699999986 355678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 772 CRVQGDTETGKWVAEKLMALEPFDS---SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
....|+.+.|+.++++++..-|.+. ..|....+.-...|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876554 47888888888999999999999888875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.7 Score=43.33 Aligned_cols=191 Identities=23% Similarity=0.150 Sum_probs=107.8
Q ss_pred hhhcHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH-
Q 002460 629 FVGISLVDMYAKCGNIEDAYILFKQMD-----MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLS- 702 (919)
Q Consensus 629 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 702 (919)
.........+...+.+..+...+.... ......+..+...+...+++..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344445555566666666665555543 12333444555555566666666666666665322221 11222222
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEP----EVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS--ASMHRALLGACRVQ 775 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~~ 775 (919)
++...|.++++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56667777777777766633 222 2333333344455667777777776665 23333 45566666666777
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
++.+.|...+.++.+..|.....+..++..+...|.++++...+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777655556666666666666677666655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.46 Score=51.37 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 671 QHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+..+.+.-++.-++.++ +.||..+-..++ +--.+.-+.++.++|++..+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK 228 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH
Confidence 44455666666666666 567665543333 22334456677777766544
|
The molecular function of this protein is uncertain. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.25 Score=50.17 Aligned_cols=171 Identities=9% Similarity=0.047 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC--CCe-ee---ehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHh
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDM--RNT-VL---WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACS 705 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 705 (919)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++.++. .|+. .-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 45556678888888888888764 222 11 223556778888888888888888874 5543 23444444433
Q ss_pred c--cC---------------C---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 002460 706 Y--TG---------------L---VSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMH 765 (919)
Q Consensus 706 ~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~ 765 (919)
+ .+ + ..+|...|+.+.++ |-.+.-..+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 2 11 1 12333444444433 3333334444443333210000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 766 RALLGACRVQGDTETGKWVAEKLMALEPFDS---SAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 766 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.....-|.+.|++.-|..-++.+++--|+.+ .+...+.++|...|..++|..+.+...
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1233447778899999999999999887644 457788899999999999998876554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.1 Score=53.42 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=64.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM----PFEA-SASMHRALLG 770 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~ 770 (919)
|...+......|++++|...|+.+.+.|.-.+- ...+-.+..+|...|++++|...|+++ |..| ....|..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444343334557777777777777665321111 245566777777777787777777765 2222 2344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
.+...|+.+.|...++++++..|+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677788999999999999998887543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=3.4 Score=45.27 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcC---CHHHHHHHHHhCC----CCCeeeehHHHHHHHhcCCHHHHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCG---NIEDAYILFKQMD----MRNTVLWNAMLVGLAQHGNGEETLKLF 682 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 682 (919)
+++..+++..+..-...+..+|.++.+---..- +.+.....+++.. ..-..+|...++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554433334444443332111111 1333444444443 233557888888888888889999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C--C
Q 002460 683 EDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-P--F 758 (919)
Q Consensus 683 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~--~ 758 (919)
.+..+.+..+ +.....+++.-+| .++.+-|.++|+.=..++|-. +.--.+.++-+.+-++-..|..+|++. + .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4456777777655 578899999999887765433 344456788888999999999999987 2 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHhhcCCcchHHHHHHH
Q 002460 759 EAS--ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS----AYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 759 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
.|+ ..+|..++.--..-||+..+..+-++....-|.+.. .-.++..-|.-.+.+..-..-++.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 343 469999999988999999999999888877663211 223444556555655544443333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.89 E-value=3.1 Score=44.51 Aligned_cols=28 Identities=4% Similarity=0.091 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002460 458 ATWNAMIFGYILSNNSHKALELFSHMHT 485 (919)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (919)
.++..++...++.++..+|-+.+.-+..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4556666666777777666666655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.5 Score=46.27 Aligned_cols=20 Identities=20% Similarity=-0.120 Sum_probs=10.9
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002460 567 GCVDNGEEDLALSIYHQMRL 586 (919)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~ 586 (919)
++.-.|++++|.+.--..++
T Consensus 178 cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred hhhhcccchhHHHHHHHHHh
Confidence 44555666666655544443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.099 Score=56.32 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=79.6
Q ss_pred eee--hHHHHHHHhcC-----CHHHHHHHHHHHHH-cCCCCChh-HHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 002460 660 VLW--NAMLVGLAQHG-----NGEETLKLFEDMKA-HGVEPDSV-TFIGVLSACSY---------TGLVSEAYENFHLMR 721 (919)
Q Consensus 660 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 721 (919)
..| ..++.|....- ..+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555544321 35678888888872 22567654 44444433221 112233444444333
Q ss_pred HhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 722 EKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 722 ~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
+ +.| |......+..++.-.|+++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|.-..+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 2 333 3455555555555556666666666665 344543 345555555555666666666666666666655444
Q ss_pred HHHHHH--HHhhcCCcchHHHHH
Q 002460 799 YVLLSN--IFAAANQWDDVTSAR 819 (919)
Q Consensus 799 ~~~l~~--~y~~~g~~~~a~~~~ 819 (919)
-++-.+ +|...+ .++|++++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 443332 344333 44455444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.2 Score=44.99 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=69.1
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-HH--HHHHHHhhcC
Q 002460 739 ALGRAGRTKEAGELILSM----PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA-YV--LLSNIFAAAN 810 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~--~l~~~y~~~g 810 (919)
...+.|++++|.+.|+.+ |..| ..-.--.|+.++.+.+++++|...+++.++++|.++.+ |. ..+-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345788888888888876 3333 23345567788999999999999999999999988764 33 2332232222
Q ss_pred CcchHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhCCcccC
Q 002460 811 QWDDVTSARGEMKRKNVKKDPA--DLIFAKVEGLIKRIKEGGYVPD 854 (919)
Q Consensus 811 ~~~~a~~~~~~m~~~~~~~~~~--~~i~~~l~~l~~~~~~~g~~p~ 854 (919)
. ..+..+. +.+.+|+ ..-+..++++........|.+|
T Consensus 99 ~-----~~~~~~~--~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 99 E-----GSLQSFF--RSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred h-----hHHhhhc--ccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 1 2223333 5555665 5556666666665554455444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.058 Score=56.57 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch-HHHHHHHHH
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAKVEG 841 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-~~i~~~l~~ 841 (919)
..+..|...+.+.+++..|+....++++++|+|.-+...-+.+|...|+++.|...|+++.+ .+|. ++|...|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH----hCCCcHHHHHHHHH
Confidence 34556666677888999999999999999999999999999999999999999999977764 3444 566666666
Q ss_pred HHHHHH
Q 002460 842 LIKRIK 847 (919)
Q Consensus 842 l~~~~~ 847 (919)
+.++++
T Consensus 334 l~~k~~ 339 (397)
T KOG0543|consen 334 LKQKIR 339 (397)
T ss_pred HHHHHH
Confidence 665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.9 Score=43.72 Aligned_cols=59 Identities=12% Similarity=-0.016 Sum_probs=29.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH--HHHHHHHHcccccHHHHHHHHHHHHHc
Q 002460 564 MISGCVDNGEEDLALSIYHQMRLSGVVPDEFT--FAILVKASSCLTALEQGRQIHANLIKL 622 (919)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~ 622 (919)
....+.+.|++++|++.|+++...-..+.... ...+..++-+.+++++|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445566777777777777665422221111 122334444555555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.07 Score=55.36 Aligned_cols=128 Identities=13% Similarity=-0.015 Sum_probs=89.2
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHH----cCCC-CCchhhcHHHHHHHHcCCHHHHHHHHHhCC-------CC--Cee
Q 002460 595 TFAILVKASSCLTALEQGRQIHANLIK----LDCS-SDPFVGISLVDMYAKCGNIEDAYILFKQMD-------MR--NTV 660 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~ 660 (919)
.|..+-..|.-.|+++.|...|+.-.. .|-. .....+..|.++|.-.|+++.|.+.|+... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555666677899999988865432 2322 223456668888999999999999888653 23 234
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAH----G-VEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+.-+|...|.-..++++|+.++.+=+.- + ..-....+-+|..++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888999999988765431 1 112345788899999999999999887765544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.024 Score=45.85 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMAL----EPF---DSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
++..+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666667777777777666653 111 13357788888888888888888876543
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.1 Score=51.44 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=89.9
Q ss_pred hHHHHHHhcCC--CCCceeHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHH
Q 002460 211 REAKFLFDGMQ--ERDVVLWKVMLRAYAEN-----GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQA 283 (919)
Q Consensus 211 ~~A~~~f~~m~--~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 283 (919)
-.-++.|...+ ++|-.+|-+++..|... +..+-....++.|.+.|+.-|..+|..+|+.+-+....-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP------ 124 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP------ 124 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc------
Confidence 34456677766 68888898888888764 567777788899999999999999999988876654211
Q ss_pred HHHHHhhhcCCCCcchhhhHhHhhhhc-CChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCCh-hHHHHHHHHHH
Q 002460 284 YAIKLLLYNNNSNVVLWNKKLSGYLQV-GDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNL-NLGQQIHGTTL 359 (919)
Q Consensus 284 ~~~~~~~~~~~~~~~~~n~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~-~~a~~~~~~~~ 359 (919)
-|.+=..+..- .+-+=+++++++|...|+.||..+-..|++++++.+-. ....++.-.|-
T Consensus 125 ----------------~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 125 ----------------QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ----------------HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11111111111 23345789999999999999999999999999987743 33444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.22 E-value=2 Score=51.48 Aligned_cols=158 Identities=20% Similarity=0.146 Sum_probs=97.5
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 541 GAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 541 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
+++++|..-+.++. ...|.-.+.--.++|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 44555555555443 223334444445566666666654 5677776666555433 122
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH--HH
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVT--FI 698 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~ 698 (919)
+.. .++--.-+|.++|+.++|.+. |...|++.+|+.+-.+|.. .-|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 222345578899999998655 5567899999998888743 223332 24
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP 757 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~ 757 (919)
.|.+-+...++.-+|-++..+...+ +.--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5667788888888888777666443 3345667788888889888776653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.76 Score=46.80 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH----HHhhcCCHH
Q 002460 672 HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVD----ALGRAGRTK 747 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~----~~~r~g~~~ 747 (919)
.|+..+|-..++++++. .+.|-..+.-.=.+|...|+.+.-...++++.. ...|+...|..+=. .+..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555556665553 222444444444555556665555555555543 23344433333222 233556666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 748 EAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 748 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
+|++.-++. .+.| |.-...++.......|+..++.+..++--..-.+ -+..|.+.+-.|...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666665554 3333 2223333444444555555555554433221110 122355555556666666777666643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.034 Score=45.00 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSM-------P-FEAS-ASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444455555555555555544443 1 1122 345566666667777777777777776654
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.9 Score=40.71 Aligned_cols=195 Identities=19% Similarity=0.128 Sum_probs=123.9
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHc-CCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC--Ce-eeehHHHH-HHH
Q 002460 596 FAILVKASSCLTALEQGRQIHANLIKL-DCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR--NT-VLWNAMLV-GLA 670 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~-~~~ 670 (919)
+......+...+.+..+...+...... ........+..+...+...+++..+...+...... +. ..+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333334444444444444444333331 22223334444555555666667777776666532 11 22333333 678
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCC
Q 002460 671 QHGNGEETLKLFEDMKAHGVEP----DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGR 745 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~ 745 (919)
..|+++.|...|++... ..| ....+......+...++.+++...+...... ... ....+..+...+...++
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 88999999999998855 344 2234444444567788999999999888763 333 46778888888888899
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 746 TKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 746 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999988876 44454 455666666666667899999999999999886
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.8 Score=45.54 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHh---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 002460 709 LVSEAYENFHLMREKYGIEPE-VEHYSFLVDALG---------RAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQG 776 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~---------r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 776 (919)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888754467776 555555544332 123455677777665 4444 6667777777777778
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
+++.|...++++..++|+.+.+|...+.+..-.|+.++|.+..++ +++.+|.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~----alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK----SLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH----HhccCch
Confidence 899999999999999999999999999999999999999988854 4444554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.82 Score=44.97 Aligned_cols=137 Identities=9% Similarity=-0.012 Sum_probs=79.9
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.-+.++..+.-+|.+.-.+.++++.++..-+-+......|...-.+.|+++.|..+|+...+. .-..+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~---- 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIM---- 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHH----
Confidence 335566666677777788888888887543445666677777777888888888888866543 111222222221
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 741 GRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
+.......+.-.+|+..|-+.+.++++.+|.++.+-+.-+-+..-.|+..+|.+..+
T Consensus 254 -----------------------V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 254 -----------------------VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred -----------------------HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 122222223344555556666666666666666555555555555566666666665
Q ss_pred HHHhC
Q 002460 821 EMKRK 825 (919)
Q Consensus 821 ~m~~~ 825 (919)
.|+++
T Consensus 311 ~~~~~ 315 (366)
T KOG2796|consen 311 AMVQQ 315 (366)
T ss_pred HHhcc
Confidence 55543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=8.7 Score=43.39 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhccCchHHHHHH
Q 002460 439 NGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD----EITIATAVKACGCLLMLKQGKQM 514 (919)
Q Consensus 439 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 514 (919)
.|++++|++++-.+..+|.. |..+.+.|++-...++++.= |-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999998888877753 34445555555555444321 11111 23455555566666667777666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh
Q 002460 515 HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594 (919)
Q Consensus 515 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 594 (919)
+.+--. ....+++|.+...+++-+.+-..+++. ....-.|..++...|.-++|.+.|-+-- .|
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc---
Confidence 654321 123566666666666666666666552 3334556677777777777777664421 11
Q ss_pred HHHHHHHHHcccccHHHHHHHHH
Q 002460 595 TFAILVKASSCLTALEQGRQIHA 617 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~ 617 (919)
...+.+|....++.+|.++-+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 133455666666666655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.23 Score=43.09 Aligned_cols=89 Identities=22% Similarity=0.137 Sum_probs=64.4
Q ss_pred HHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHhhcCCc
Q 002460 739 ALGRAGRTKEAGELILSM-PFE-ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS----AYVLLSNIFAAANQW 812 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 812 (919)
++...|++++|++.|.+. ..- ..++.|+.-..+++.+|+.++|..-+++++++...... +|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456777888888777665 222 35677777788888888888888888888887543222 577778888888888
Q ss_pred chHHHHHHHHHhCCC
Q 002460 813 DDVTSARGEMKRKNV 827 (919)
Q Consensus 813 ~~a~~~~~~m~~~~~ 827 (919)
++|..-|+..-+-|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888887777666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=10 Score=43.52 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccc
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLT 607 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 607 (919)
.+.+--+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-+++-+.+. .++-|.....+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444455566778888899998888888888888888888999999888777655543 2466777888899999
Q ss_pred cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 608 ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 608 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
+.++|..+..+.... .-.+.+|.++|++.+|.++
T Consensus 759 n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 999988887543221 1478888999988888765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.3 Score=43.52 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 002460 725 GIEPEVEHYSFLVDALGRAGRTKEAGELILSM----PFEASASMHRALLGACRVQ 775 (919)
Q Consensus 725 ~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~ 775 (919)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666543 4444456666666554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.26 Score=43.86 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYT 707 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 707 (919)
..++.+++.++++.|+++....+++..=.-|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666777777777777777777654321111 0000000 111234678899999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 002460 708 GLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741 (919)
Q Consensus 708 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 741 (919)
|++..|.++.+...+.|+++-+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888888988886443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.11 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.31 E-value=2 Score=42.26 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE 729 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 729 (919)
....+...|++.+|++.|+++... -|+. .....+..++-..|++++|...++...+.+.-.|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 445566778888888888888775 3332 24556677778888888888888888776554444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.23 Score=45.97 Aligned_cols=69 Identities=29% Similarity=0.421 Sum_probs=43.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChhHH
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMR----EKYGIEPEVEHY 733 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~y 733 (919)
..++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.+.|+.+. +++|+.|+..+-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34555666777788888888877773 45 56677778888888888888887776654 345777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.7 Score=38.02 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 002460 670 AQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA 749 (919)
.-.|..++..++..+.... .+..-++-++.--...-+-+-..+.++++-.-|.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456666666666666552 23333443443323333333334444444222211 234455555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 750 GELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 750 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
...+-.+. .+.......+.+...+|+-+.-..++..+..-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444442 223344556677788899888888888888655557889999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.33 Score=53.69 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 668 GLAQHGNGEETLKLFEDMKAHGVEP--DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 668 ~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
.....|+++++.++.+.-. +-| +..-...++.-+.+.|..+.|+++...-..+ .++....|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCC
Confidence 3456778888777664111 222 1334677888888999999999876554443 456678999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 746 TKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
++.|.++.++.. +...|..|...+..+||++.|+.++++.- -+..|+-+|...|+-+.-.++-+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887654 77899999999999999999999998654 4667888899999887766666655555
Q ss_pred C
Q 002460 826 N 826 (919)
Q Consensus 826 ~ 826 (919)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.39 Score=50.55 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 002460 731 EHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 731 ~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 808 (919)
..+..+.-.|.+.+++.+|++..++. ..+| |.-.+--=..+|...|+++.|+..++++++++|+|..+-.-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34666777888999999999888876 3444 555555667788899999999999999999999999888888877776
Q ss_pred cCCcchH-HHHHHHHHh
Q 002460 809 ANQWDDV-TSARGEMKR 824 (919)
Q Consensus 809 ~g~~~~a-~~~~~~m~~ 824 (919)
..++.+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 6665555 456766654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.3 Score=39.97 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=25.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHcccccHHHHHHHHHHHHH
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVP--DEFTFAILVKASSCLTALEQGRQIHANLIK 621 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 621 (919)
...+.+.|++++|++.|+++....... -......+..++-+.|+.+.|...++.+++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334455666666666666665542111 111223334444455555555555544443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.11 Score=33.81 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888899999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.63 Score=47.21 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=51.3
Q ss_pred CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhcc---CCHHHHHHHHHHhHHhcCCCC-ChhH
Q 002460 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYT---GLVSEAYENFHLMREKYGIEP-EVEH 732 (919)
Q Consensus 658 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p-~~~~ 732 (919)
|...|-.|...|..+|+++.|..-|.+..+ +.| |...+..+..++..+ .+..++..+|+++.. ..| ++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence 566666677777777777777777766666 344 333444444433222 233456666666643 233 3444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
...|...+...|++.+|...++.|
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555555556666655555555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.58 E-value=10 Score=39.41 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHHHHcccccHH---HHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHH
Q 002460 596 FAILVKASSCLTALE---QGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGL 669 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 669 (919)
+..++.++...+..+ +|..+.+.+.+. .+..+.++-.-++.+.+.++.+++.+++.+|... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 444455555544433 333344444222 1122233333344555566666666666666521 223444444443
Q ss_pred Hh--cCCHHHHHHHHHHHHHcCCCCC
Q 002460 670 AQ--HGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 670 ~~--~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
.. ......|...+.+++...+.|.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 11 1223445555555544434443
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.41 Score=44.98 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=65.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 002460 738 DALGRAGRTKEAGELILSM-PFEA------SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 810 (919)
+-+...|.+++|..-+..+ ..-| ....|..-..+..+.+..+.|.....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455677777777766654 1112 12334444445667789999999999999999988888888899999999
Q ss_pred CcchHHHHHHHHHhCC
Q 002460 811 QWDDVTSARGEMKRKN 826 (919)
Q Consensus 811 ~~~~a~~~~~~m~~~~ 826 (919)
++++|++-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999998877643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.54 E-value=12 Score=40.05 Aligned_cols=87 Identities=7% Similarity=0.100 Sum_probs=61.6
Q ss_pred hhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchH
Q 002460 290 LYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIV 369 (919)
Q Consensus 290 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 369 (919)
....+.|+.+|-.||.-+-..|..++..+++++|..- ..--...+..-|++-....++...+.+|++-++..+. +..
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldL 111 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDL 111 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhH
Confidence 3445568889999999999999999999999999642 1112345556677766778888888888888777665 344
Q ss_pred HhHHHHHhHh
Q 002460 370 GNSLINMYSK 379 (919)
Q Consensus 370 ~~~li~~~~k 379 (919)
|..-++--.+
T Consensus 112 W~lYl~YIRr 121 (660)
T COG5107 112 WMLYLEYIRR 121 (660)
T ss_pred HHHHHHHHHh
Confidence 4444444333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.37 Score=51.96 Aligned_cols=62 Identities=11% Similarity=-0.033 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEASA----SMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
...++.+..+|...|++++|+..+++. .+.|+. ..|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666777777777777777663 555553 34677777777777777777777777775
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.12 E-value=8.4 Score=37.88 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCchH
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSMP-------FEASA-SMHRALLGACRVQGDTETGKWVAEKLMAL----EPFDSSAY 799 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~ 799 (919)
.|.....+|.|..+++||-..+.+-. .-|+. ..+-+.+-.+....|+..|+..++.-.++ .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566777777777766665531 11222 12333333444456777777777775543 45566666
Q ss_pred HHHHHHHhhcCCcchHHHHH
Q 002460 800 VLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 800 ~~l~~~y~~~g~~~~a~~~~ 819 (919)
..|...|. .|+.+++.++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 66666554 56666665554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.07 E-value=11 Score=44.09 Aligned_cols=48 Identities=21% Similarity=0.059 Sum_probs=34.0
Q ss_pred chhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCC
Q 002460 298 VLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTD 346 (919)
Q Consensus 298 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g 346 (919)
..--.+|-.+.+.|++++|.++.++.. .........|...+..+....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhCC
Confidence 334467888999999999999995544 345566677777788887654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.87 E-value=7.2 Score=42.66 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhCCCCCc
Q 002460 781 GKWVAEKLMALEPFDSS 797 (919)
Q Consensus 781 a~~~~~~~~~~~p~~~~ 797 (919)
|.+++.++.+.+|.-|.
T Consensus 365 aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 365 AVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHhCCCCch
Confidence 66888899999997554
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.82 E-value=4.1 Score=41.38 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=77.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRA---LLGACRVQGDTE 779 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 779 (919)
.....|+..+|...|+..... ..-+...-..|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 355678888888888777653 222355666778888888888888888888875443333333 122222222222
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
+. ..++.-+.-+|+|...-..|+..|...|+.++|.+.+=.+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 2334455678999999999999999999999998765444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.57 E-value=3.3 Score=37.83 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRA-GRTKEAGELILSMPFEASASMHRALLGAC 772 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 772 (919)
...++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .++..|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33455555555555555555544421 22223333333 5556666655542 2344555555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.4 Score=36.45 Aligned_cols=127 Identities=9% Similarity=-0.048 Sum_probs=78.6
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.-..++..+...+.......+++.+...+ ..+...++.++..|++.+ .++..++++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34556777777778888888888888775 345667777888777653 3444444442 12233344466777
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 002460 741 GRAGRTKEAGELILSMPFEASASMHRALLGACRVQ-GDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 807 (919)
.+.+.++++.-++.+++... -.+.....+ ++++.|.+.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777888888887775322 222233334 778888887775 335556666655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.46 E-value=3.7 Score=45.57 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=67.5
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHH
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 613 (919)
.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... +..++-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344567888999988887776 556899999999999999999988887532 344555566667766666
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHh
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQ 653 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 653 (919)
++.......|- +|....++.-.|++++..+++.+
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666655542 33444455556676666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.89 Score=45.18 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=84.1
Q ss_pred HHHHhccCC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc----------
Q 002460 546 AQSIFNDIP--APDDVAWTTMISGCVDN-----GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA---------- 608 (919)
Q Consensus 546 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------- 608 (919)
.++.|...+ ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 356677776 67888998888888754 5667777888999999999999999999998766432
Q ss_pred ------HHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCH-HHHHHHHHhC
Q 002460 609 ------LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNI-EDAYILFKQM 654 (919)
Q Consensus 609 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~ 654 (919)
-+-+..++++|..+|+.||-.+-..|++++++.|-. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234778889999999999999999999999887753 3333443333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=13 Score=37.17 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEP----DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV 730 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 730 (919)
-+..-.+.|++++|.+.|+.+... .| ...+-..++.++-+.+++++|...+++....++-.|+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 344445677788888888777764 33 23356666667777777778777777777766666654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.36 E-value=18 Score=38.86 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=86.3
Q ss_pred hhhcHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHH-HHHH
Q 002460 629 FVGISLVDMYAKCGNIEDAYILFKQMD-----MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFI-GVLS 702 (919)
Q Consensus 629 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 702 (919)
.++.++++...+..-++.|..+|-+.. .+++..++++|.-++ .|+...|..+|+--+.. .||...|. -.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 455556666666666666777766654 245666777766554 45667777777655542 45555432 3455
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPE--VEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQG 776 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 776 (919)
-+...++-+.|..+|+...++ +..+ ...|..+|+-=..-|++..|..+=++| ..-|...+-..+.+-+....
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 556677777788888766653 3333 567777777777778887777766665 23344444444444454443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.34 E-value=23 Score=39.86 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=128.2
Q ss_pred CchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 002460 627 DPFVGISLVDMYAKCGNIEDAYILFKQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA 703 (919)
Q Consensus 627 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 703 (919)
+..+|...++--.+.|+.+.+.-+|++...|- ...|--.+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45667777788889999999999999987552 335655555555568888888887776664333333333333334
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAG---ELILSM-PFEASASMHRALLG-----ACR 773 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 773 (919)
+-..|+.+.|..+++.+.+++ |+ ++.-.--+....|.|+.+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 677899999999999999863 65 444444566778899999988 555544 33334433333332 134
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 811 (919)
..++.+.|..++.++.+..|.+...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999888776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1 Score=46.34 Aligned_cols=224 Identities=15% Similarity=0.042 Sum_probs=112.0
Q ss_pred HHHcCChhHHHHHHHHHHhc--CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHc--CCCCCc---hhhcHHHHHHHH
Q 002460 568 CVDNGEEDLALSIYHQMRLS--GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKL--DCSSDP---FVGISLVDMYAK 640 (919)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~y~~ 640 (919)
+....+.++|+..+.+-+.. ...--..+|..+..+.++.|..+++...--..+.. ...... ..|-.|...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888887776543 11223346666777777777777665543211111 111111 122223334444
Q ss_pred cCCHHHHHHHHHhCC-CC-------CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C--ChhHHHHHHHHHhcc
Q 002460 641 CGNIEDAYILFKQMD-MR-------NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVE---P--DSVTFIGVLSACSYT 707 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~-~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~t~~~ll~a~~~~ 707 (919)
..++.+++.+-+.-. -| .-...-+|..++.-.+.++++++.|+...+-.-. | .-..+..|-+.|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 444444444333211 01 1122334555566666677777777766552111 1 123566777777777
Q ss_pred CCHHHHHHHHHHhH---HhcCCCCChhHHHHH-----HHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHH
Q 002460 708 GLVSEAYENFHLMR---EKYGIEPEVEHYSFL-----VDALGRAGRTKEAGELILSM-------PFEAS-ASMHRALLGA 771 (919)
Q Consensus 708 g~~~~a~~~~~~m~---~~~~~~p~~~~y~~l-----i~~~~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~ 771 (919)
.++++|.-+..+.. ..+++.--..-|.++ .-+|...|++-+|.+..++. +.+|. +.....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777766554432 223333222223332 22344555555555554432 22221 2344556666
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 002460 772 CRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~ 791 (919)
|+..|+.|.|..-++++...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77777777777777766654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.3 Score=37.44 Aligned_cols=97 Identities=21% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 002460 700 VLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMP-FEASASMHRALLGACRVQGD 777 (919)
Q Consensus 700 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~ 777 (919)
+++.-...++.+++..+++.+. -+.|. .++-..-+..+.+.|++.+|+.+++++. -.|....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3444556778889998888885 45675 4444455566788999999999999883 34555666788888877655
Q ss_pred HHHHHHHHHHHHhhCCCCCchHH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
-..=..+++++++..| |+.+-.
T Consensus 93 D~~Wr~~A~evle~~~-d~~a~~ 114 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA-DPDARA 114 (160)
T ss_pred ChHHHHHHHHHHhcCC-ChHHHH
Confidence 5555666777777665 344433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.76 E-value=4.9 Score=36.32 Aligned_cols=92 Identities=16% Similarity=0.052 Sum_probs=44.9
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH--HHHHHHHHHH-----
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM----PFEASA--SMHRALLGAC----- 772 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~--~~~~~ll~~~----- 772 (919)
...|++++|.+.|+.+..++-..|- ....--|+.+|-+.|++++|...+++. |..|+. ..+..=|..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 3445555555555555554433332 334444555555555555555555443 223322 1111111111
Q ss_pred ---------HhcCCHHHHHHHHHHHHhhCCCCC
Q 002460 773 ---------RVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 773 ---------~~~g~~~~a~~~~~~~~~~~p~~~ 796 (919)
+-.+....|...+++++..-|+++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 111235677788888888888654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.51 Score=43.97 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC----cchHHHHHHHHH---hCCCCCCchHHHHHHH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ----WDDVTSARGEMK---RKNVKKDPADLIFAKV 839 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~---~~~~~~~~~~~i~~~l 839 (919)
+++|..-+++++.++|+...++..|+++|...|. -.+|..+|++.. ++.+..+|+.+.|.+-
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4567777888889999999999999999987764 233444444433 2334456776666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.22 E-value=2 Score=43.11 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=52.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 002460 671 QHGNGEETLKLFEDMKAHGVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGR 745 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~ 745 (919)
+.|++.+|..-|...++. -|+. ..+.-|..++...|++++|..+|..+.++|+-.|. ++.+--|...+.+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 556677777777777664 2332 23445666677777777777777777666555554 3566666666666666
Q ss_pred HHHHHHHHHhC
Q 002460 746 TKEAGELILSM 756 (919)
Q Consensus 746 ~~eA~~~~~~m 756 (919)
.++|..++++.
T Consensus 231 ~d~A~atl~qv 241 (262)
T COG1729 231 TDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.14 E-value=5.6 Score=46.59 Aligned_cols=211 Identities=15% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCh-------hHHHHHHHHHHHCCCCCCHhHH--HH
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKD---GFDLATWNAMIFGYILSNNS-------HKALELFSHMHTSGERLDEITI--AT 497 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~t~--~~ 497 (919)
=++|-.+.|+|++++|.++..+.. .+....+-..+..|+.+.+- ++...-|++........|++-. -.
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 367888999999999999993332 23445677778888775332 3556666666655443366532 23
Q ss_pred HHHHHhccC-c-------hHHHHHHHHHHHHhCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHH
Q 002460 498 AVKACGCLL-M-------LKQGKQMHAYAMKSGFEL-----DLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTM 564 (919)
Q Consensus 498 ll~~~~~~~-~-------~~~a~~~~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 564 (919)
+|..|--.. . .+.-..+.-.+++..... +..++..|=....+-| .+.|.. ..+... .
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Y 264 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---Y 264 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------H
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---H
Confidence 343332211 1 222222222222322211 1223322222221111 233333 122222 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcC-CCCCchhhcHHHHHHHH---
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLD-CSSDPFVGISLVDMYAK--- 640 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~--- 640 (919)
...+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455678999999998877 3345567777776665544333222211 2222211 11222456678888886
Q ss_pred cCCHHHHHHHHHhCC
Q 002460 641 CGNIEDAYILFKQMD 655 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~ 655 (919)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 467788888877665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.14 E-value=12 Score=40.15 Aligned_cols=72 Identities=18% Similarity=0.107 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCHHHHHHHhccCCCC---Chh----hHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 002460 532 GILDMYVKCGAMVDAQSIFNDIPAP---DDV----AWTTMISGCVD---NGEEDLALSIYHQMRLSGVVPDEFTFAILVK 601 (919)
Q Consensus 532 ~Li~~y~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 601 (919)
.|+-.|....+++...++.+.+... +.. .---..-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577788888888888877652 111 11122334555 7888999999888766666777777776554
Q ss_pred HH
Q 002460 602 AS 603 (919)
Q Consensus 602 a~ 603 (919)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.06 E-value=36 Score=39.55 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 002460 426 SFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGC 504 (919)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 504 (919)
..++..+|+.+.-.|++++|-...-.|-..+..-|.--+.-+...++......+ +....-+.++..|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 345677778888888888888888777777777777777777766665433222 2222223445566666666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.1 Score=42.94 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH-HHHHHHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM----PFEASA-SMHRALL 769 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll 769 (919)
.|..-+. +...|++.+|..-|....+.|--.+ ....+-.|...+...|++++|...|..+ |..|.+ ..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554444 3456778888888888887542211 2445566778888888888887777665 333322 3444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
......|+.++|...++++++--|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 55566677777777777777777765443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.71 E-value=18 Score=35.50 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHh
Q 002460 776 GDTETGKWVAEKLMA 790 (919)
Q Consensus 776 g~~~~a~~~~~~~~~ 790 (919)
+++.+|..+++++..
T Consensus 168 eqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.8 Score=37.83 Aligned_cols=88 Identities=18% Similarity=0.122 Sum_probs=49.7
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhc
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PF-EA-SA---SMHRALLGACRVQ 775 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~-~p-~~---~~~~~ll~~~~~~ 775 (919)
+.+..|+.+.|++.|..... +-| ....||.-..++.-+|+.++|++=+++. .. .| .- ..+..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35566677777766666643 233 4566666666666677777766665554 11 11 11 1222233346777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 002460 776 GDTETGKWVAEKLMALEP 793 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p 793 (919)
|+.+.|..-++.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777776666655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.35 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999887643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.38 E-value=8.4 Score=43.47 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCh-----hHHHHHHHHH-h---ccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002460 664 AMLVGLAQHGNGEETLKLFEDMKAHG-VEPDS-----VTFIGVLSAC-S---YTGLVSEAYENFHLMREKYGIEPEVEHY 733 (919)
Q Consensus 664 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~-~---~~g~~~~a~~~~~~m~~~~~~~p~~~~y 733 (919)
.+++...-.|+-+.+++.+.+..+.+ ++-.. .+|..++..+ . .....+.|.++++.+..+| |+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 34445555666677777666654421 11111 1233333322 2 2456788888888887753 665544
Q ss_pred HH-HHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH-HHHHH
Q 002460 734 SF-LVDALGRAGRTKEAGELILSMPF-E-----ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV-LLSNI 805 (919)
Q Consensus 734 ~~-li~~~~r~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 805 (919)
.. -...+...|++++|.+.+++.-. + -....+.-+.+.+....++++|...+.++.+.+.-....|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 43 34556678999999999986521 1 12344555666777889999999999999987766555555 45556
Q ss_pred HhhcCCc-------chHHHHHHHHH
Q 002460 806 FAAANQW-------DDVTSARGEMK 823 (919)
Q Consensus 806 y~~~g~~-------~~a~~~~~~m~ 823 (919)
|...|+. ++|.+++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 7778888 78888777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.29 E-value=15 Score=37.46 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
......|+..+|..+|+..... .| +...-..+..++...|+++.|..++..+..+ --.........=+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888874 34 3456667788888899999998888877442 111111112234556666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHhhcCCcchHH
Q 002460 746 TKEAGELILSMPFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALE--PFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
..+..++..+..-.| |...--.|...+...|+.+.|...+=.++..+ -+|..+--.|..++..-|.-+.+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 666666666654455 55555666677777788888877766666543 345666666777777666554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.18 E-value=15 Score=34.44 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHH
Q 002460 317 IECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQ 352 (919)
Q Consensus 317 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~ 352 (919)
++.++.+.+.|+.|+...+..++..+.+.|....-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345556666777777777777777777777655433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=4.9 Score=37.25 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=41.8
Q ss_pred HHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 002460 638 YAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAY 714 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 714 (919)
+-..|++++|..+|.-+.. -|..-|..|..++-..|++++|+..|......+ .-|...+.....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3345666666666554431 233345555555555555555555555544422 123333334444555555555555
Q ss_pred HHHHHhHH
Q 002460 715 ENFHLMRE 722 (919)
Q Consensus 715 ~~~~~m~~ 722 (919)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.13 Score=47.59 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=65.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchH
Q 002460 164 PLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEE 243 (919)
Q Consensus 164 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~ 243 (919)
.++..+.+.+........++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888877777889999999999999888888888874332 444566777777777777
Q ss_pred HHHHHHHHHH
Q 002460 244 VFHLFVDLHR 253 (919)
Q Consensus 244 A~~l~~~m~~ 253 (919)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 7777776543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.7 Score=47.43 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHh----hcCCHHHHH
Q 002460 680 KLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-----EHYSFLVDALG----RAGRTKEAG 750 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~~~----r~g~~~eA~ 750 (919)
-+|.-++.. ++| .+..+++...-.|+-+.|.+.+....+..++.-.. -.|..++..+. .....++|.
T Consensus 178 G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 455555553 333 34556666777899999999988876643333321 23333333332 356889999
Q ss_pred HHHHhC-CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 751 ELILSM-PFEASASMHRALLG-ACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 751 ~~~~~m-~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
++++.+ ..-|+...|.-.-+ .++..|++++|...++++++...+ ..-.+.-+++.|...++|++|.+.+..+.+
T Consensus 254 ~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 254 ELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 999998 45688887765554 467889999999999988753322 233577889999999999999999999886
Q ss_pred C
Q 002460 825 K 825 (919)
Q Consensus 825 ~ 825 (919)
.
T Consensus 334 ~ 334 (468)
T PF10300_consen 334 E 334 (468)
T ss_pred c
Confidence 4
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.69 Score=29.93 Aligned_cols=31 Identities=26% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777778888888888888888774
|
... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.43 E-value=50 Score=43.58 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..+|-.....+|..|.++.|..+.-++.+..+ +.++.-.+...+..|+-..|..++++-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46899999999999999999999998888774 7889999999999999999999998776543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=29 Score=36.04 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=32.0
Q ss_pred CchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 627 DPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHG-NGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 627 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ +...+...+..+.. .+|..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33344444555555554322222222222333333333333333332 12344444444442 334444444444555
Q ss_pred ccCC
Q 002460 706 YTGL 709 (919)
Q Consensus 706 ~~g~ 709 (919)
+.|.
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.36 E-value=6.7 Score=37.77 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=92.3
Q ss_pred eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 002460 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLV 737 (919)
Q Consensus 659 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 737 (919)
+..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++--.|++.-|.+=|...-+.-.-.|-...|-.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777777788888888888888877 3442 22322222244556788888776665544323333344443333
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHhhcC
Q 002460 738 DALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFD-------SSAYVLLSNIFAAAN 810 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g 810 (919)
.+.-+..+|..-+.+--...|...|...+-.+.- |... -+..++++.+...++ ..+|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2445667776544332224455666665544432 1111 112222333222222 347889999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 002460 811 QWDDVTSARGEMKRKN 826 (919)
Q Consensus 811 ~~~~a~~~~~~m~~~~ 826 (919)
+.++|..+|+......
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999998766543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.19 E-value=3.3 Score=42.36 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=89.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHH---HHHHH-HHHHhcCCHH
Q 002460 706 YTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PF-EASASM---HRALL-GACRVQGDTE 779 (919)
Q Consensus 706 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~-~p~~~~---~~~ll-~~~~~~g~~~ 779 (919)
..|...+|...++++.++ .+.|...+...=+++.-.|+.+.-...+++. |. .||... .+-+. -+....|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 357778888888998885 4556777777778888899999888888887 43 555532 22233 3345668999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
+|++.++++++++|.|.-+...++.++...|+..|+.+...
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999987654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.13 E-value=22 Score=38.53 Aligned_cols=149 Identities=11% Similarity=-0.031 Sum_probs=81.1
Q ss_pred CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hh
Q 002460 657 RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP---DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE--VE 731 (919)
Q Consensus 657 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 731 (919)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++..... .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345578888888899999999999888887743222 2233444445556678888888888777662 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 732 HYSFLVDALGRAGRTKEAGEL-ILSMPFEASASMHRALLGACRV------QGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
....+...+.. ..+..... ........-...+..+..-+.. +++.+.+...++++.++.|+...+|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222233333 378888999999999999988888888777
Q ss_pred HHhh
Q 002460 805 IFAA 808 (919)
Q Consensus 805 ~y~~ 808 (919)
.+..
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.09 E-value=2.6 Score=43.02 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh-----CCCCCCchHHHHHH
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR-----KNVKKDPADLIFAK 838 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~i~~~ 838 (919)
++..+...+...|+.+.+...++.+++.+|-+...|..|..+|...|+...|+..++.+++ .|+. |+.++...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~--P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID--PAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC--ccHHHHHH
Confidence 4555667777888899999999999999999999999999999999999999998887764 4544 44444444
Q ss_pred HHHH
Q 002460 839 VEGL 842 (919)
Q Consensus 839 l~~l 842 (919)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.82 E-value=11 Score=39.27 Aligned_cols=219 Identities=11% Similarity=0.034 Sum_probs=135.0
Q ss_pred HHcCCHHHHHHHhccCCC------CChhhHHHHHHHHHHcCChhHHHHHHH-HHHhc-CCCCCH---hHHHHHHHHHccc
Q 002460 538 VKCGAMVDAQSIFNDIPA------PDDVAWTTMISGCVDNGEEDLALSIYH-QMRLS-GVVPDE---FTFAILVKASSCL 606 (919)
Q Consensus 538 ~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~-g~~p~~---~t~~~ll~a~~~~ 606 (919)
....+.++|...+.+... .-..++..+..+.++.|++++++..-- +|.-. ...-.. ..|..+-.++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776665443 223467778888899999888876432 22111 011111 2344444444444
Q ss_pred ccHHHHHHHHHHHHHc-CCCC---CchhhcHHHHHHHHcCCHHHHHHHHHhCC-------CC--CeeeehHHHHHHHhcC
Q 002460 607 TALEQGRQIHANLIKL-DCSS---DPFVGISLVDMYAKCGNIEDAYILFKQMD-------MR--NTVLWNAMLVGLAQHG 673 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g 673 (919)
.++.+++.+-..-... |..+ .-...-++..++.-.+.++++++.|+... .+ ....+-+|.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544333221 2222 11233446777777888899988888764 22 3457889999999999
Q ss_pred CHHHHHHHHHHHHHc--CCCCC--hhHHHHHH-----HHHhccCCHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHH
Q 002460 674 NGEETLKLFEDMKAH--GVEPD--SVTFIGVL-----SACSYTGLVSEAYENFHLMREK---YGIEPE-VEHYSFLVDAL 740 (919)
Q Consensus 674 ~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll-----~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~y~~li~~~ 740 (919)
++++|+-+..+..+. .+..+ ..-|..++ -++...|..-.|.+..++..+- .|-.|. .....++.|.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999888877552 12222 22344432 2577789988898888776542 233332 45567899999
Q ss_pred hhcCCHHHHHHHHHhC
Q 002460 741 GRAGRTKEAGELILSM 756 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m 756 (919)
...|+.|.|..-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999999998887763
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.74 E-value=3.3 Score=37.42 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
..++.+.++.+++.+.-+.|+.+..-..-++++...|+|+||..+++...+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3577777777777777777877777777777888888888888877777666543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.65 E-value=7.1 Score=40.80 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhc-cCC--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDSV-TFIGVLSACSY-TGL--VSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.+.++.+|+.+.+.|+..+.. -+.+-+-+++. ... +..+.++++.+.+. |+++...+|..+.-+-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 367788899999988887443 34443333333 222 45788889999887 9999999988766443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=59 Score=38.32 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 002460 672 HGNGEETLKLFEDMKAHG-VEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKE 748 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~e 748 (919)
..+.+.|..++.+..... +.+... +...+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 446688888998875432 333322 3333333333333256777777665332 1244444445555558999999
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 749 AGELILSMPFE-ASASMHRA-LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 749 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
+...|..|+.. .+..-|.- +..+....|+.+.|...++++.. + ...|-.|+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 99999998521 12222332 33444567999999999998744 2 235555543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.22 E-value=5.6 Score=38.35 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=47.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHH---HHHHHHH
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVE---GLIKRIK 847 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~---~l~~~~~ 847 (919)
...+.+.+++|+..++.-.+-+|.|...-..|..+|+-.|+|++|..-.+..-+..-.-.++-+.|..+- .+....-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evf 89 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVF 89 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666666666666666666655555444333344445555442 2333334
Q ss_pred hCCcccCC
Q 002460 848 EGGYVPDT 855 (919)
Q Consensus 848 ~~g~~p~~ 855 (919)
+-|-+|++
T Consensus 90 ag~~~Pgf 97 (273)
T COG4455 90 AGGAVPGF 97 (273)
T ss_pred ccCCCCCC
Confidence 44555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.06 E-value=36 Score=35.40 Aligned_cols=87 Identities=7% Similarity=-0.051 Sum_probs=46.0
Q ss_pred cchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHh--CCChhHHHHH
Q 002460 405 EGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYIL--SNNSHKALEL 479 (919)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~ 479 (919)
+....+..+.+.+..... -.+.++-.-+..+.+.++.+++.+++.+|... ....+..++..+-+ ......|...
T Consensus 101 ~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ 179 (278)
T PF08631_consen 101 ESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFC 179 (278)
T ss_pred HHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHH
Confidence 344445555555533222 22344444455555577777887777776542 23445555554422 2334566677
Q ss_pred HHHHHHCCCCCCH
Q 002460 480 FSHMHTSGERLDE 492 (919)
Q Consensus 480 ~~~m~~~g~~p~~ 492 (919)
++.+....+.|..
T Consensus 180 ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 180 LDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhCCCh
Confidence 7666665555444
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.02 E-value=48 Score=40.54 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=71.8
Q ss_pred hcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 002460 631 GISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLV 710 (919)
Q Consensus 631 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 710 (919)
+.-.++.--+.|.+.+|..++..=.+.-.+.|.+...-+...+.+++|.-+|+..-+ .--.+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444455666666766665433333334444445555566777777777765422 12256678888999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 002460 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEA 760 (919)
Q Consensus 711 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p 760 (919)
++|..+-.++.. +-.--..+-..|+.-+..+++.-||-++..+....|
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 998888776632 111113334567778888888888888887764444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=3.8 Score=41.97 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..+.|-.++...++++.|.++.+.++.+.|+++.-+.-.+-+|++.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456677788999999999999999999999999999999999999999999998887766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.32 E-value=2.9 Score=38.50 Aligned_cols=70 Identities=19% Similarity=0.110 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 002460 742 RAGRTKEAGELILSM-PFEASASMHRALL-GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 742 r~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 811 (919)
+.++.+++..++..+ -..|.......+- +.+..+|++.+|.++++.+.+-.|..+..-.+++..+...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 455666666666655 2344333222221 224455666666666666655555555555555555554443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.25 E-value=5.1 Score=39.22 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 744 GRTKEAGELILSM-PFEASASMHR-ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 744 g~~~eA~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
.+++.|...+.+. ...|+..+|. .=+-.+.+..+++.+.+--.+++++.|+....+..|+........+++|+.++.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3455555544443 4567664433 3333345567888888888899999999888999999999999999999998887
Q ss_pred HH--hCCCCCCchHHHHHHHH
Q 002460 822 MK--RKNVKKDPADLIFAKVE 840 (919)
Q Consensus 822 m~--~~~~~~~~~~~i~~~l~ 840 (919)
.. -+.-+..++.+|...|.
T Consensus 104 a~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHH
Confidence 73 34444556666655444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.03 E-value=70 Score=37.62 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=47.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCchHHHHHHHHhhcCC
Q 002460 736 LVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMA-LEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~ 811 (919)
++..+....+.+++..+.+..+.. ++..|-.+|.-+...+.++.-.+..+++++ +.-++--.-..+.+++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 344456667788888888877533 788888888888888866665555555543 233333334555666666654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.75 E-value=39 Score=34.39 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
...|...|++.+|..+-++++.++|-+...+..|.++|+..|+--+|.+-++++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3467889999999999999999999999999999999999999888888887765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.2 Score=29.38 Aligned_cols=28 Identities=32% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788888888888888888886544
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.08 E-value=55 Score=35.43 Aligned_cols=204 Identities=14% Similarity=0.207 Sum_probs=130.5
Q ss_pred cCCHHHHHHHHHhCCC----CCeeeehHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChh----HHHHHHHHHhccCCHH
Q 002460 641 CGNIEDAYILFKQMDM----RNTVLWNAMLVGL-AQHGNGEETLKLFEDMKAHGVEPDSV----TFIGVLSACSYTGLVS 711 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 711 (919)
.|+.++|.+.+..+.. +....+-+|+.+- ....+..+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888863 3455666666654 445679999999998876 456432 3444455678899999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHH-HHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002460 712 EAYENFHLMREKYGIEPEVEHYS-FLVDALGRA---GRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEK 787 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~-~li~~~~r~---g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 787 (919)
++..+-..-..+|...|-...|. .++.++.+. -..+.-.+++..|.-.--..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888777777777644433 333344333 34445555666664333346777788888899999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHhhc-----CCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 788 LMALEPFDSSAYVLLSNIFAAA-----NQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 788 ~~~~~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
+..+.. ....-...+++|... .+.++|.+.++.+-...+.+ ....+.+....+...+.+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~-~Dr~Ll~AA~~va~~V~~ 346 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE-RDRALLEAARSVARQVRR 346 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh-hhHHHHHHHHHHHHHHhc
Confidence 999874 344555566666643 45666666655443333322 113333333444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.02 E-value=24 Score=33.75 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCCCCChhHHHH--HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHhhcCCHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIG--VLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF-----LVDALGRAGRTKEA 749 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-----li~~~~r~g~~~eA 749 (919)
+.....+++....-+-...++.. +...+...|++++|...++..... |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555566655321112222222 334577888888888887766432 33333333 44566778888898
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 750 GELILSMPFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 750 ~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+.+++....+. .+..-..-..++...|+-++|+..++++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888764211 1222233345667778888888888888877653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.81 E-value=16 Score=39.61 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 760 ASASMHRALLGACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 760 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
....+|..+...|+++|+++.|..++.++...++. .+.....-+++....|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34568889999999999999999999999886532 466777789999999999999988776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.47 E-value=15 Score=38.46 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHhccCCC-------CChhhHHHHHHHHHHcCC----hhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHccccc--
Q 002460 544 VDAQSIFNDIPA-------PDDVAWTTMISGCVDNGE----EDLALSIYHQMRLSGVVPDE--FTFAILVKASSCLTA-- 608 (919)
Q Consensus 544 ~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~-- 608 (919)
..|..+|+.|.+ ++..++.+|+.. ..++ .+++..+|+.+.+.|+..+. ...+.++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 344455555542 344455555443 2222 24566778888877776543 344444444433332
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhcHHH
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLV 635 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li 635 (919)
+..+.++++.+.+.|++.....|..+.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHH
Confidence 446777788888888888777776443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.82 E-value=5.5 Score=40.75 Aligned_cols=73 Identities=18% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChhHHHHHHHH
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE----KYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~y~~li~~ 739 (919)
++..+...|+.+.+.+.++++... .| |...|..++.+|...|+...|+..|+.+.+ ..|+.|...........
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 333444444444444444444442 23 444444444444444444444444444332 34666665555444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.68 E-value=2.5 Score=43.25 Aligned_cols=108 Identities=17% Similarity=0.064 Sum_probs=64.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 002460 701 LSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGD 777 (919)
Q Consensus 701 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 777 (919)
.+-|.++|.+++|+.+|.... .+.| +...|..-..+|.+..++..|+.=.... .+.. -.-.|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 345777888888888887654 3455 6666766777788888777776555443 1111 11123333333334477
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
..+|..-++.+++++|++. -|-..|++.....|+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 7888888888888888743 334444444443333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.22 E-value=29 Score=30.74 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=42.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGI 726 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 726 (919)
+.-+......|+-++-.+++.++.+. -+|++.....+..||.+.|...++.+++.+..++ |+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 34566677888888888888887653 3677778888888898999988888888888775 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.96 E-value=2 Score=29.88 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=21.9
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV 695 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 695 (919)
+|..+..+|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455666777777777777777777777 356443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.31 E-value=51 Score=32.75 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=93.0
Q ss_pred hcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---h---hHHHHHHHHH
Q 002460 631 GISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD---S---VTFIGVLSAC 704 (919)
Q Consensus 631 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~---~t~~~ll~a~ 704 (919)
++--..+|..+|.++.|-..+++.-+ ...+.++++|+++|++...- +.-+ . ..+..+-..+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhHh
Confidence 34456788889988877766665421 22445788888888887652 1111 1 1234444456
Q ss_pred hccCCHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHh
Q 002460 705 SYTGLVSEAYENFHLMREK---YGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM---P--FEA-SASMHRALLGACRV 774 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m---~--~~p-~~~~~~~ll~~~~~ 774 (919)
.+..++++|-..|.+-..- ..--|+ -..|-..|-.+.-..++..|+..++.- | ..| +..+...||.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 6677777776655443210 011122 123555555666778999999999884 3 122 456777888876 4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 002460 775 QGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 775 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 810 (919)
.||.++...++. +++...|-+.|...+
T Consensus 240 ~gD~E~~~kvl~---------sp~~r~MDneya~l~ 266 (308)
T KOG1585|consen 240 EGDIEEIKKVLS---------SPTVRNMDNEYAHLN 266 (308)
T ss_pred cCCHHHHHHHHc---------ChHhhhhhHHHHHHh
Confidence 588888777663 445555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.27 E-value=44 Score=31.27 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHhhcC
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVE-HYSFL--VDALGRAG 744 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~l--i~~~~r~g 744 (919)
+++.+..++|+.-|.++.+.|...=++ .-..........|+..+|...|+++-.+ .-.|... -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456778888898898888876443222 2222334567789999999999988765 3333322 11111 23456788
Q ss_pred CHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 745 RTKEAGELILSMPFE--A-SASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 745 ~~~eA~~~~~~m~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
.+++...-++-+..+ | ....-.+|.-+-.+.|++..|...++++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888776322 2 234455676677788888888888887776
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.68 E-value=35 Score=31.08 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=50.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMPFEA-SASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
...++.+++..+++.|. -+.|+ .+.-.+-+..+.+.|+++||..++++....+ ....-.+|+..|..-..-..=.
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 34778888888888875 45665 3333444556778888888888888884333 4455556666665443322233
Q ss_pred HHHHHHHhh
Q 002460 783 WVAEKLMAL 791 (919)
Q Consensus 783 ~~~~~~~~~ 791 (919)
.++.++++-
T Consensus 98 ~~A~~~le~ 106 (153)
T TIGR02561 98 VHADEVLAR 106 (153)
T ss_pred HHHHHHHHh
Confidence 344444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.64 E-value=18 Score=33.62 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 002460 437 CRNGSMAEAEYLFENKDGFDLATWNAMI-----FGYILSNNSHKALELFSHMHTSGERLDE 492 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 492 (919)
++.++.++|...|..+...+--+|-.|. ....+.|+...|+..|++.-.....|-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 4567778888888887776666665543 3456778888888888888765444433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.37 E-value=3.4 Score=30.15 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
.+.-++.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455678889999999999999999998765433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.30 E-value=2 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=22.0
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 466777778888888888888888777 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.08 E-value=64 Score=32.43 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=95.2
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCC---Cee---eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHh-
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMR---NTV---LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACS- 705 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~- 705 (919)
+..-.+.|++++|.+.|+.+... +.. +--.++-++.+.+++++|+..+++.+.. .|++ .-|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHH
Confidence 33445689999999999999743 222 3344566788999999999999999884 4432 23444444433
Q ss_pred --ccC----CH---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 002460 706 --YTG----LV---SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQG 776 (919)
Q Consensus 706 --~~g----~~---~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 776 (919)
... +. .+|..-|+....+| |+. .--.+|..-+...... -+.-=.+...-|.++|
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~ 181 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLNDA-LAGHEMAIARYYLKRG 181 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 221 22 23333444444432 221 1111111111110000 0000113344567777
Q ss_pred CHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 777 DTETGKWVAEKLMALEPFDSS---AYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+.-|..-++.+++--|+.+. ++..|.++|...|..++|.+..+-+..
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777776555444 355566778888888888777655543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=74 Score=33.09 Aligned_cols=131 Identities=8% Similarity=0.047 Sum_probs=63.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccc-cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHc
Q 002460 563 TMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLT-ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKC 641 (919)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 641 (919)
..+.++.+.+. ++|+..+-.+.+. +|...-...+.++.+.+ .-..+...+..+. ..++..+-..-+.++++.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHcc
Confidence 34444444443 4455555555542 23333333333333332 1122333322222 234555555566667777
Q ss_pred CCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 642 GNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 76433333333333333 234566777777774 677777777763 456655555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.25 E-value=1.3e+02 Score=35.52 Aligned_cols=184 Identities=12% Similarity=0.001 Sum_probs=103.9
Q ss_pred hhhHHHHHHHhhcCCCchhhhHHHHHHHh----cCC-----CCCc-------chhhHHHHHHHhCCChhHHHHHhccCCC
Q 002460 53 SSQWFSILRHAISTSDLLLGKSTHARILN----SSQ-----IPDR-------FLTNNLMTMYSRCGSLVYARRLFDKMPD 116 (919)
Q Consensus 53 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~m~~ 116 (919)
.+..+++++++...+.+-.-..+...+.+ -+. ..|- -....-|+++.+..-++.|..+-..-.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~ 362 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL 362 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC
Confidence 34456677777766665444433333322 120 0111 1123456777777778888887765443
Q ss_pred CCcchHHHHHH---HHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCc
Q 002460 117 RDLISWNSILA---AYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWD 193 (919)
Q Consensus 117 ~~~~~~n~li~---~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~ 193 (919)
+....-+.+.. -+-+.| ++++|..-|-+-... +.| +.+++-+....++..-...++.+.+.|+. +
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kg-----df~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~ 430 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKG-----DFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-N 430 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-c
Confidence 32222333321 233566 899999888765421 222 34566666666666667777788888864 3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcee--HHHHHHHHHHcCCchHHHHHHH
Q 002460 194 EFVSGALVNIYSKFGKIREAKFLFDGMQERDVVL--WKVMLRAYAENGFGEEVFHLFV 249 (919)
Q Consensus 194 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~--~n~li~~~~~~g~~~~A~~l~~ 249 (919)
..--+.|++.|.|.++.+.-.+..+... ...+. ....+..+-+.+-.++|..+-.
T Consensus 431 ~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 431 SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred chhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 3345678999999999988888777665 22221 3334444444444444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.04 E-value=1.9 Score=27.73 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=23.5
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.++..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-12
Identities = 81/525 (15%), Positives = 151/525 (28%), Gaps = 150/525 (28%)
Query: 419 KNDTVADSFVSTALIDVY----------CRNGSMAEAEYLFENKDGFDLATWNAMIFGYI 468
K + + FV L Y R SM Y+ +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR----------------- 116
Query: 469 LSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM----KSGFE 524
+ + ++F+ + S RL ++ LL L+ K + + K+
Sbjct: 117 --DRLYNDNQVFAKYNVS--RLQPYL---KLRQA--LLELRPAKNVLIDGVLGSGKTWVA 167
Query: 525 LDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLAL--SIYH 582
LD+C+S + + W + ++ E L + + +
Sbjct: 168 LDVCLSYKVQCKM------------------DFKIFWLNL--KNCNSPETVLEMLQKLLY 207
Query: 583 QMRLSGVVPDEFTFAILVKASSCLTALE--QGRQIHAN-LIKLDCSSDPFVGISLVDMYA 639
Q+ + + + I ++ S L + + N L+ L
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---------------- 251
Query: 640 KCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIG 699
N+++A ++ +L + + T + D + + PD V
Sbjct: 252 ---NVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KS 305
Query: 700 VLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFE 759
+L Y + L RE P LS+
Sbjct: 306 LLL--KYLDCRPQD-----LPREVLTTNP-----------------------RRLSI--- 332
Query: 760 ASASMHRALLGACR------VQGDTETGKWVAEKLMALEPFDSSA-YVLLSNIFAAANQW 812
+ S+ G V D T + L LEP + + LS +F
Sbjct: 333 IAESIRD---GLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLS-VFP----- 382
Query: 813 DDV--TSARGEMKRKNVKKDPADLIFAKVE--GLI-KRIKEGGY-VPDTDFVLLDVEEEE 866
+ + +V K ++ K+ L+ K+ KE +P L + E
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK--VKLE 440
Query: 867 KERALYYHSEKLARAYGLISTPPSSVILSNKEPLYANRF--HHLR 909
E AL H + Y + T S ++ Y HHL+
Sbjct: 441 NEYAL--H-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 5e-08
Identities = 47/274 (17%), Positives = 84/274 (30%), Gaps = 75/274 (27%)
Query: 7 ANLKPR-HKHTYVIFSSFTKDTYRNLPSFSLSLL--------PFLQKSHFSSSSSSSQWF 57
L+P ++ + S F ++P+ LSL+ + + S +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 58 SILRHAISTSDLLLG--------KSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARR 109
IS + L + H I++ IP F +++L+
Sbjct: 422 K--ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP------------- 466
Query: 110 LFDKMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLC 169
P D ++ I + H N E+ E LFR + F + K+
Sbjct: 467 -----PYLDQYFYSHI--GH-HL--KNIEH-PERMTLFRMVFLDFRFLEQ-------KIR 508
Query: 170 LSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWK 229
W + G + + + Y + I + D ER V
Sbjct: 509 -HDSTAWNAS---------GSILNTLQQ---LKFYKPY--ICDN----DPKYERLVNAIL 549
Query: 230 VMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESV 263
L EN + + DL R L +DE++
Sbjct: 550 DFLPKIEEN----LICSKYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 3e-07
Identities = 83/644 (12%), Positives = 172/644 (26%), Gaps = 217/644 (33%)
Query: 178 SETVHGYALKIGLVWDEF--------VSGALVNIYSKFGKIREAKFLF---DGMQERDVV 226
E + Y + + D F V +I SK E + D + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMSKDAVSGTLRL 67
Query: 227 LWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPD----DESVQCVLGVISDLGKRHEEQVQ 282
W L + EE+ FV+ L + ++ S + + + EQ
Sbjct: 68 FW--TLLSK-----QEEMVQKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 283 AYAIKLLLYNNNSNVVLWN-----------KKLSGYLQVGDN---HGAIECFVNMIRSNV 328
LYN+N +N + L L+ N G ++ S
Sbjct: 118 R------LYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDG-------VLGSG- 162
Query: 329 QYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRT 388
+ + ++ + +I LK+ ++ L + ++ R+
Sbjct: 163 --KTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRS 217
Query: 389 DQFTLASVLRASSSLPEGLH---------LSKQIHVHA------IKNDTVADSFVSTALI 433
D SS++ +H L + + + ++N ++F
Sbjct: 218 DH---------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------ 262
Query: 434 DVYC------RNGSMAEA--------EYLFENKDGFDLATWNAMIFGYILSNNSHKALEL 479
++ C R + + L + + L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----------------EVKSL 306
Query: 480 FSH-MHTSGERLDEITIAT---AVKACGCLL-----MLKQGKQMHAYAMKSGFELDLCV- 529
+ + L + T + + K ++ + + E L V
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 530 -SSGILDMYVKCGAMVDAQSIFN-DIPAPDDV---AWTTMISGCVDNGEEDLALSIYHQM 584
+ M+ + S+F P + W +I V + +++
Sbjct: 367 EPAEYRKMFDRL-------SVFPPSAHIPTILLSLIWFDVIKSDVM--------VVVNKL 411
Query: 585 RLSGVV---PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKC 641
+V P E T +I LE +H +++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--------------------- 450
Query: 642 GNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVL 701
D Y + K D ++ + + D + + IG
Sbjct: 451 ----DHYNIPKTFD-------------------SDDLIPPYLDQYFY-------SHIG-- 478
Query: 702 SACSYTGLVSEAYENFHLMREKYG----IEPEVEHYSFLVDALG 741
+ E E L R + +E ++ H S +A G
Sbjct: 479 ----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 52/314 (16%), Positives = 103/314 (32%), Gaps = 73/314 (23%)
Query: 19 IFSSFTKDTYRNLPSFSLSLLPFLQKSHFSSS-----SSSSQW----FSILRHAISTS-D 68
+ + ++LP L+ P S + S ++ W L I +S +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 69 LLLGKSTHAR-------ILN-SSQIPDRFL--------TNNLMTMYSRCGSLVYARRLFD 112
+L + R + S+ IP L +++M + ++ + L +
Sbjct: 365 VL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLVE 418
Query: 113 KMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSS 172
K P IS SI E L RS+ + L+ L
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDLIPPYL-D 470
Query: 173 GYVWASETVH-GYALKIGLVWDEFVSGALVNIYSKFGKIREAKFL-FDGMQERDVVLWKV 230
Y + S H G+ LK + + F + FL F +++ K+
Sbjct: 471 QY-FYS---HIGHHLKNIEHPERM---------TLFRMV----FLDFRFLEQ------KI 507
Query: 231 MLRAYAENGFGEEVFHLFVDL--HRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYA--- 285
+ A N G + + L ++ +C +D + ++ I D + EE +
Sbjct: 508 RHDSTAWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 286 -IKLLLYNNNSNVV 298
+++ L + +
Sbjct: 567 LLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-05
Identities = 99/643 (15%), Positives = 193/643 (30%), Gaps = 191/643 (29%)
Query: 13 HKHTY-----VIFSSFTKD-TYRNLPSFSLSLLPFLQKSHFSSSSSSSQWFSIL--RHAI 64
H++ Y V +F + +++ S+L S + I+ + A+
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL------------SKEEIDHIIMSKDAV 61
Query: 65 STSDLLL------GKSTHARILNSSQIPD-RFLTNNL----------MTMYSRCGSLVY- 106
S + L + + + + +FL + + MY +Y
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 107 ARRLFDKM------PDRDLISW------NSILAAYAHSGEG---------NAENVTE--G 143
++F K P L + G G + V
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 144 FRLF-RSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIG-----------LV 191
F++F +L+ + L L KL W S + H +K+ L
Sbjct: 182 FKIFWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 192 WDEFVSGALV--NIYSKFGKIREAKFLFDG-----MQERDVVLWKVMLRAYAENGFGEEV 244
+ + LV N+ + K A F+ + R + +
Sbjct: 240 SKPYENCLLVLLNVQNA--KAWNA---FNLSCKILLTTRF--------KQVTDFLSAATT 286
Query: 245 FHLFVDLHRSGLCPDDESVQC---VLGV-ISDLGKRHE-EQVQAYAIKLL--LYNNNSNV 297
H+ +D H L P DE L DL E + ++ +
Sbjct: 287 THISLDHHSMTLTP-DEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLA- 342
Query: 298 VLWNKKLSGYLQVGDN--HGAIECFVNMIRSNVQ---YDSVTFLVALAAVAGTDNLNLGQ 352
W+ + V + IE +N++ +D ++ + +
Sbjct: 343 -TWD----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--------PSAH--- 386
Query: 353 QIHGTTL-----KSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGL 407
I L ++V N L YS + + + T+ S+P +
Sbjct: 387 -IPTILLSLIWFDVIKSDVMVVVNKLHK-YS----LVEKQPKESTI--------SIP-SI 431
Query: 408 HLSKQIH------VHAIKNDTVADSFVSTALIDVYCRNGSMAEAE--YLFENKDGFDLAT 459
+L ++ +H ++ D + + + + + Y + +
Sbjct: 432 YLELKVKLENEYALHR----SIVDHY---NIPKTFDSDDLIPPYLDQYFYSH-------- 476
Query: 460 WNAMIFGYILSNNSH-KALELFSHMHTSGERLD----EITI---ATAVKACGCLL-MLKQ 510
G+ L N H + + LF + LD E I +TA A G +L L+Q
Sbjct: 477 -----IGHHLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 511 GKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDI 553
K Y + + + V++ ILD K + S + D+
Sbjct: 527 LKFYKPYICDNDPKYERLVNA-ILDFLPKIEENL-ICSKYTDL 567
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 1e-10
Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 7/183 (3%)
Query: 574 EDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGIS 633
+ +A + R + P E A L++ + +L+ + + S ++
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 634 LVDMYAKCGNIEDAYILFKQMDMR-------NTVLWNAMLVGLAQHGNGEETLKLFEDMK 686
+ A+ L + ++NA+++G A+ G +E + + +K
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 687 AHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRT 746
G+ PD +++ L + E + G++ + + L+ RA
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 747 KEA 749
K
Sbjct: 253 KAV 255
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 2e-06
Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 7/138 (5%)
Query: 472 NSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSS 531
+ A L + E E +A ++ L L + ++
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 532 GILDMYVKCGAMVDAQSIFNDI-------PAPDDVAWTTMISGCVDNGEEDLALSIYHQM 584
+ + A + + ++ G G + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 585 RLSGVVPDEFTFAILVKA 602
+ +G+ PD ++A ++
Sbjct: 192 KDAGLTPDLLSYAAALQC 209
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 3e-06
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 431 ALIDVYCRNGSMAEAEYLFE-------NKDGFDLATWNAMIFGYILSNNSHKALELFSHM 483
A + A +L + L +NA++ G+ + + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 484 HTSGERLDEITIATAVKACG 503
+G D ++ A A++ G
Sbjct: 192 KDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 4e-04
Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 8/154 (5%)
Query: 161 TLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGM 220
LA LL+ + + G + L + A ++ A L
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 221 QER-------DVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDL 273
+ + ++ ++ +A G +E+ ++ + +GL PD S L +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 274 GKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGY 307
+ ++ ++ + LS
Sbjct: 214 DQD-AGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 7e-04
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 385 GLRTDQFTLASVLRASSSL--PEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSM 442
L Q L + + H +H + + + A++ + R G+
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 443 AEAEYLFE--NKDGF--DLATWNAMIFGYILSNNSHKALE-LFSHMHTSGERLDEITIAT 497
E Y+ G DL ++ A + + +E M G +L + A
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 498 AVKACG 503
+
Sbjct: 242 LLSEED 247
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 919 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 8e-05
Identities = 41/386 (10%), Positives = 106/386 (27%), Gaps = 18/386 (4%)
Query: 432 LIDVYCRNGSMAEAEYLFE---NKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGE 488
L + G AE ++ + + + ++ +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 489 RLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQS 548
L E + + + +D ++ +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 549 IFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA 608
+ PD + + + + + ++ L +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 609 LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA---YILFKQMDMRNTVLWNAM 665
+ + LD + I+L ++ + + A Y+ + + V+ +
Sbjct: 185 IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 666 LVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVL-SACSYTGLVSEAYENFHLMREKY 724
+ G + + + +A ++P L +A G V+EA + ++
Sbjct: 244 ACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN--TALR 299
Query: 725 GIEPEVEHYSFLVDALGRAGRTKEAGEL----ILSMPFEASASMHRALLGACRVQGDTET 780
+ + L + G +EA L + P A+A + A + QG +
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--VLQQQGKLQE 357
Query: 781 GKWVAEKLMALEPFDSSAYVLLSNIF 806
++ + + P + AY + N
Sbjct: 358 ALMHYKEAIRISPTFADAYSNMGNTL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 919 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.15 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.89 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.79 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.26 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.6e-23 Score=160.63 Aligned_cols=237 Identities=13% Similarity=0.100 Sum_probs=153.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHH
Q ss_conf 98399369999999998669998896899999997032428999999999998189997113507999999809999999
Q 002460 569 VDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAY 648 (919)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 648 (919)
...+....+...+.+..... +-+...+..+...+...+..+.|...+....+.. +.+...+..+...+...|++++|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~ 223 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 11000135678888740258-6106899863630102471999999999999849-464999999715522005299999
Q ss_pred HHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 9998078---79834106789999965997799999999998699988-3679999999841599999999999959841
Q 002460 649 ILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKY 724 (919)
Q Consensus 649 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 724 (919)
..++... ..+...+..+...+...|++++|+..|++..+ +.|+ ..++..+..++...|++++|...++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 300 (388)
T d1w3ba_ 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL- 300 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-
T ss_conf 999985777554799999999999987899999999999998--49998999999999999748799999999865404-
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99989328999999986229989999999939-9999-998999999999950987999999999983099997218789
Q 002460 725 GIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 725 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 802 (919)
.+.+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++++|+++.+|..|
T Consensus 301 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 301 -CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf -8730010157999999878999999999999986889899999999999985999999999999997099989999999
Q ss_pred HHHHHHCCC
Q ss_conf 999863289
Q 002460 803 SNIFAAANQ 811 (919)
Q Consensus 803 ~~~y~~~g~ 811 (919)
+++|.+.|+
T Consensus 380 g~~~~~~~D 388 (388)
T d1w3ba_ 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHCCC
T ss_conf 999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-22 Score=155.06 Aligned_cols=366 Identities=14% Similarity=0.066 Sum_probs=254.8
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99279915999999997878999897589999999703176588999999999909988815798999999983999999
Q 002460 467 YILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDA 546 (919)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 546 (919)
+.+.|++++|...++++.+.. +-+...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 998699999999999999868-9989999999999998699999999999999859-99899999999996420002222
Q ss_pred HHHHCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 998010999---98425999999999839936999999999866999889689999999703242899999999999818
Q 002460 547 QSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLD 623 (919)
Q Consensus 547 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 623 (919)
...+....+ .+...+..........+....+............. ...............+....+...........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 22222121122222222222222222222222222221112222222-22222222222211000135678888740258
Q ss_pred CCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99971135079999998099999999998078---798341067899999659977999999999986999883679999
Q 002460 624 CSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV 700 (919)
Q Consensus 624 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 700 (919)
+.....+..+...+...|++++|...++... ..+...|..+...+...|++++|+..+++..... ..+...+..+
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf -61068998636301024719999999999998494649999997155220052999999999857775-5479999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9998415999999999999598419998-9328999999986229989999999939--999999899999999995098
Q 002460 701 LSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGD 777 (919)
Q Consensus 701 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~ 777 (919)
...+...|++++|...|+++.+. .| +...+..++.++...|++++|.+.++.. ..+.+...+..+...+...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999878999999999999984---999899999999999974879999999986540487300101579999998789
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHH
Q ss_conf 7999999999983099997218789999863289214999999998299998906-789999999999
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAKVEGLIK 844 (919)
Q Consensus 778 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~-~~i~~~l~~l~~ 844 (919)
+++|...++++++++|+++.++..++.+|...|++++|...+++..+. +|. .+.+..+..+..
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT----CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHH
T ss_conf 999999999999868898999999999999859999999999999970----9998999999999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6e-15 Score=107.69 Aligned_cols=117 Identities=11% Similarity=-0.039 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999995984199989328999999986229989999999939-9999-9989999999999509879999999
Q 002460 708 GLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVA 785 (919)
Q Consensus 708 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 785 (919)
+...++...+........-.++...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...+
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 57999999999999971301222111036888888887755002111222222222111013330122111101378887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999830999972187899998632892149999999982
Q 002460 786 EKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 786 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
+++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 789988432499999999999987899999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.6e-15 Score=108.46 Aligned_cols=147 Identities=14% Similarity=0.040 Sum_probs=108.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 99965997799999999998699-98836799999998415999999999999598419998-93289999999862299
Q 002460 668 GLAQHGNGEETLKLFEDMKAHGV-EPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGR 745 (919)
Q Consensus 668 ~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 745 (919)
.+...+...++...+.+..+... .++...+..+...+...|++++|...++..... .| +...|..++..+...|+
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHCCCCCCC
T ss_conf 888765799999999999997130122211103688888888775500211122222---22221110133301221111
Q ss_pred HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHCCCC
Q ss_conf 89999999939-9999-998999999999950987999999999983099997218-----------7899998632892
Q 002460 746 TKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY-----------VLLSNIFAAANQW 812 (919)
Q Consensus 746 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~ 812 (919)
+++|.+.+++. ...| +...|..++.++...|++++|...++++++++|++...+ ..+..++...|++
T Consensus 222 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 222 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 01378887789988432499999999999987899999999999997097570011245999999999999999982988
Q ss_pred CHHHH
Q ss_conf 14999
Q 002460 813 DDVTS 817 (919)
Q Consensus 813 ~~A~~ 817 (919)
+.+..
T Consensus 302 d~~~~ 306 (323)
T d1fcha_ 302 DAYGA 306 (323)
T ss_dssp GGHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.7e-10 Score=77.46 Aligned_cols=161 Identities=12% Similarity=-0.007 Sum_probs=85.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHH
Q ss_conf 78999996599779999999999869998----8367999999984159999999999995984199989-----32899
Q 002460 664 AMLVGLAQHGNGEETLKLFEDMKAHGVEP----DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-----VEHYS 734 (919)
Q Consensus 664 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 734 (919)
.+...+...|+++.+...+.+........ ....+......+...+....+...+............ ...+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88789998145666689999988876630024689999888888876466788889999999999873115726999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCCCHHHHH
Q ss_conf 9999986229989999999939-9999-----9989999999999509879999999999830------99997218789
Q 002460 735 FLVDALGRAGRTKEAGELILSM-PFEA-----SASMHRALLGACRVQGDTETGKWVAEKLMAL------EPFDSSAYVLL 802 (919)
Q Consensus 735 ~li~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~p~~~~~~~~l 802 (919)
.+...+...|+.++|...+++. ...+ ....+..+..++...|+.+.|...+++++.. .|....++..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999986044898999999999762246667778899999999875879999999999998876426674799999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9998632892149999999982
Q 002460 803 SNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 803 ~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
+.+|...|++++|.+.+++..+
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987899999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=1.1e-09 Score=74.34 Aligned_cols=186 Identities=11% Similarity=0.052 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCCC--C-C-EEEEHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 2899999999999818999711350799999980999999999980787--9-8-3410678999996599779999999
Q 002460 608 ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-N-TVLWNAMLVGLAQHGNGEETLKLFE 683 (919)
Q Consensus 608 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 683 (919)
..+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+++.. | + ...|...+....+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----C
Q ss_conf 999869998-83679999999-84159999999999995984199989328999999986229989999999939----9
Q 002460 684 DMKAHGVEP-DSVTFIGVLSA-CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----P 757 (919)
Q Consensus 684 ~m~~~g~~p-d~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~ 757 (919)
++.+. .| +...+...... +...|+.+.|..+|+.+... .+.+...+...++.+.+.|+.++|..++++. +
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99980--88867999999999987655778999999999986--100388999999999986986899999999998278
Q ss_pred CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999--9989999999999509879999999999830999972
Q 002460 758 FEA--SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 758 ~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 797 (919)
..| ...+|...+..-..+|+.+.+..+.+++.++.|++..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 986899999999999999849999999999999987711022
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.8e-10 Score=79.45 Aligned_cols=207 Identities=10% Similarity=0.071 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHH
Q ss_conf 59999999998399369999999998669998896899999997032428999999999998189997113507999999
Q 002460 560 AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYA 639 (919)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 639 (919)
.++.+...+.+.+.+++|+.+++++++. .|+.. ..++....++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~----------------------------------~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANY----------------------------------TVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH----------------------------------HHHHHHHHHHH
T ss_conf 9999999999588669999999999987--98876----------------------------------99999999999
Q ss_pred HCC-CHHHHHHHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 809-9999999998078---7983410678999996599779999999999869998-8367999999984159999999
Q 002460 640 KCG-NIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAY 714 (919)
Q Consensus 640 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 714 (919)
..| ++++|...++... ..+..+|+.+...+...|++++|+..++++.+ +.| +...+..+...+...|++++|.
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8376799999999999988774226898875888850537889988755543--21004688998877888888667899
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999598419998-93289999999862299------89999999939-9999-9989999999999509879999999
Q 002460 715 ENFHLMREKYGIEP-EVEHYSFLVDALGRAGR------TKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVA 785 (919)
Q Consensus 715 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 785 (919)
..++.+.+. .| +...|+.+..++.+.+. +++|.+.+.++ ...| +...|..+...+.. ...+++...+
T Consensus 167 ~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHH
T ss_pred HHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCHHHHHHHH
T ss_conf 999999987---974499998899999874563102354776799999998498856999998779886-2718899999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHH
Q ss_conf 9998309999721--8789999863
Q 002460 786 EKLMALEPFDSSA--YVLLSNIFAA 808 (919)
Q Consensus 786 ~~~~~l~p~~~~~--~~~l~~~y~~ 808 (919)
+++.++.|..... +..++.+|..
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999728775789999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=3.8e-09 Score=71.06 Aligned_cols=97 Identities=10% Similarity=-0.065 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC-HHHHH
Q ss_conf 99999998415999999999999598419998--9328999999986229989999999939-------99999-98999
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEP--EVEHYSFLVDALGRAGRTKEAGELILSM-------PFEAS-ASMHR 766 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~ 766 (919)
+......+...|+.++|...+..........+ ....+..+..++...|++++|...+++. ...|+ ...+.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999860448989999999997622466677788999999998758799999999999988764266747999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999950987999999999983099
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~l~p 793 (919)
.+...+...|+.++|...+++++++.+
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999987899999999999999765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=8.4e-10 Score=75.18 Aligned_cols=189 Identities=11% Similarity=0.046 Sum_probs=127.9
Q ss_pred HHCHHHHHHHHCCCHHHHHHHHHHCCC--C-CEEEEHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf 350799999980999999999980787--9-8341067899999659-97799999999998699988-36799999998
Q 002460 630 VGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHG-NGEETLKLFEDMKAHGVEPD-SVTFIGVLSAC 704 (919)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~ 704 (919)
.++-+...+.+.+..++|+.+++.+.. | +..+|+....++...| ++++|+..+++..+ +.|+ ..++..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 99999999995886699999999999879887699999999999837679999999999998--8774226898875888
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC----
Q ss_conf 415999999999999598419998-9328999999986229989999999939-9999-99899999999995098----
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGD---- 777 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~---- 777 (919)
...|++++|+..++.+.+. .| +...|..++.++...|++++|++.++++ ...| +...|..+.......+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHCCHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 8505378899887555432---1004688998877888888667899999999987974499998899999874563102
Q ss_pred --HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf --79999999999830999972187899998632892149999999982
Q 002460 778 --TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 778 --~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
.+.|...+.++++++|++..++..++.++...| .+++...++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_conf 35477679999999849885699999877988627-1889999999997
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.7e-10 Score=78.24 Aligned_cols=186 Identities=15% Similarity=0.035 Sum_probs=74.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCC
Q ss_conf 9999998099999999998078---79834106789999965997799999999998699988-3679999999841599
Q 002460 634 LVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGL 709 (919)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 709 (919)
+...|.+.|++++|...|++.. +.++.+|+.+..+|...|++++|+..|++..+ +.|+ ..++..+..++...|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999879999999999985434999889996004278887778875234468999--876111158889999998766
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHH----HCCCHHHHHHH
Q ss_conf 99999999995984199989328999999986229989999999939-99999989999999999----50987999999
Q 002460 710 VSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACR----VQGDTETGKWV 784 (919)
Q Consensus 710 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~----~~g~~~~a~~~ 784 (919)
+++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...+....+. +...+. ..+..+.+...
T Consensus 121 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 197 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKAD 197 (259)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999865--300078889999999885358789999987640314443455-778888887777789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999830999972187899998632892149999999982
Q 002460 785 AEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 785 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
........|....+|..++.+|...|++++|...++....
T Consensus 198 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 198 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9986640845099999999999987899999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.7e-11 Score=85.86 Aligned_cols=193 Identities=10% Similarity=-0.025 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCCCC---CEEEEHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8999999999998189997113507999999809999999999807879---8341067899999659977999999999
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDM 685 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 685 (919)
.+++...+..+...........+......+...+..++|...++.+... +..+|+.+...+...|++++|...+++.
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 204 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999855921211110578999874455289999999988718987999999999999826889899988776
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHH
Q ss_conf 98699988367999999984159999999999995984199989328999999986229989999999939-9999-998
Q 002460 686 KAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SAS 763 (919)
Q Consensus 686 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~ 763 (919)
... .|+.. .....+...+..+++...+..... ..++....+..++..+...|+.++|...+.+. ...| +..
T Consensus 205 ~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 277 (334)
T d1dcea1 205 ENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 277 (334)
T ss_dssp HHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH--HHHHH---HHHHHHHHHCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 776--89999---999999882441488999998877--18660567887999999986699999999988762913799
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999999999950987999999999983099997218789999863
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 808 (919)
.|..++..+...|+.++|...++++++++|.++..|..|+..+.-
T Consensus 278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 278 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999878999999999999998796639999999999867
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=9.9e-10 Score=74.72 Aligned_cols=191 Identities=11% Similarity=-0.025 Sum_probs=101.0
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCCC--C-CEEEEHHHHHHHHHCCCHHHHH
Q ss_conf 703242899999999999818999711350799999980999999999980787--9-8341067899999659977999
Q 002460 603 SSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETL 679 (919)
Q Consensus 603 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 679 (919)
+.+.|++++|...+...++.. +.+...+..+..+|.+.|++++|...|+++.. | +..+|..+..+|...|++++|+
T Consensus 47 y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 125 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998799999999999854349-9988999600427888777887523446899987611115888999999876679999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHCC
Q ss_conf 99999998699988-36799999998415999999999999598419998932899999998622998999999-99399
Q 002460 680 KLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGEL-ILSMP 757 (919)
Q Consensus 680 ~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~-~~~~~ 757 (919)
..|++..+. .|+ ......+..++...+..+....+...... ..+....+.. +..+............ .....
T Consensus 126 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (259)
T d1xnfa_ 126 DDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADAT 199 (259)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999865--300078889999999885358789999987640---3144434557-7888888777778999999999
Q ss_pred ----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf ----9999-989999999999509879999999999830999972187
Q 002460 758 ----FEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 758 ----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 800 (919)
..|+ ...|..+...+...|+.+.|...+++++..+|++...|.
T Consensus 200 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 866408450999999999999878999999999999983997799999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=1.7e-08 Score=66.92 Aligned_cols=179 Identities=8% Similarity=0.014 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHCC----CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999998078----79834106789999965997799999999998699988--3679999999841599999999
Q 002460 642 GNIEDAYILFKQMD----MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD--SVTFIGVLSACSYTGLVSEAYE 715 (919)
Q Consensus 642 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~ 715 (919)
+..++|..+|++.. ..+...|...+..+...|+.+.|..+|+++++. .|. ...+...+..+...|..+.|.+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 245999999999998749987999999999998613389999999999987--157869999999999998278688999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9999598419998932899999998-6229989999999939--999999899999999995098799999999998309
Q 002460 716 NFHLMREKYGIEPEVEHYSFLVDAL-GRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALE 792 (919)
Q Consensus 716 ~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 792 (919)
+|+.+... .+.+...|...+... ...|+.+.|..+++.+ ..+.+...|..++......|+.+.|+.++++++...
T Consensus 156 i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999980--8886799999999998765577899999999998610038899999999998698689999999999827
Q ss_pred CCCCC----HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99972----187899998632892149999999982
Q 002460 793 PFDSS----AYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 793 p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
|.++. .|......-...|+.+.+.++.+++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 898689999999999999984999999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=2.2e-09 Score=72.55 Aligned_cols=42 Identities=5% Similarity=-0.061 Sum_probs=16.2
Q ss_pred HHHHCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99983999999998010999---9842599999999983993699
Q 002460 536 MYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 536 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 577 (919)
.+...+..++|...++.... .+..+|+.+...+...|++++|
T Consensus 153 ~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 987445528999999998871898799999999999982688989
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=5.3e-07 Score=57.45 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC-CC---CC----CH-HHHHHHHHHHH
Q ss_conf 5999999999999598419---9989-328999999986229989999999939-99---99----99-89999999999
Q 002460 707 TGLVSEAYENFHLMREKYG---IEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PF---EA----SA-SMHRALLGACR 773 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~---~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~---~p----~~-~~~~~ll~~~~ 773 (919)
.|++++|.+.+++..+-.. ..+. ..++..++..+...|++++|.+.++++ .. .+ .. ..+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87899998899999999873376033346889999999981739999999999998681332455569999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHH--CCCCCHHHHHHH
Q ss_conf 5098799999999998309999721-----8789999863--289214999999
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSA-----YVLLSNIFAA--ANQWDDVTSARG 820 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~~--~g~~~~A~~~~~ 820 (919)
..|+.+.|...+++..+++|..+.. ...++.+|.. .+++++|+..++
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 846599999999999975977444399999999999998368999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=8.5e-08 Score=62.48 Aligned_cols=120 Identities=8% Similarity=-0.140 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHH
Q ss_conf 88367999999984159999999999995984199989328999999986229989999999939-9999-998999999
Q 002460 692 PDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALL 769 (919)
Q Consensus 692 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll 769 (919)
|+...+......+...|++++|+..|+++... .+.+...|..++.+|.+.|++++|+..++++ .+.| +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 64999999999999869999999999999985--9998999981789874100000124788888871887389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99995098799999999998309999721878999986328921
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 813 (919)
.++...|+++.|...++++++++|++...+...+..+...++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 123 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99998799999999999998749556798999999999998886
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=3.4e-07 Score=58.71 Aligned_cols=86 Identities=12% Similarity=-0.048 Sum_probs=54.0
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999809999999999807879834106789999965997799999999998699988-36799999998415999999
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 713 (919)
...+...|+++.|.+.|.++..++...|..+..+|...|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999877999999999864898899999999999985891467878999999--8552346678899999854249999
Q ss_pred HHHHHHHHH
Q ss_conf 999999598
Q 002460 714 YENFHLMRE 722 (919)
Q Consensus 714 ~~~~~~m~~ 722 (919)
...|++...
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=2.8e-06 Score=52.86 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999841599999999999959
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMR 721 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~ 721 (919)
+..+...+...|++++|...|+++.
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 8999999998173999999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=2.6e-07 Score=59.47 Aligned_cols=84 Identities=12% Similarity=-0.023 Sum_probs=29.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHC
Q ss_conf 999996599779999999999869998-8367999999984159999999999995984199989-32899999998622
Q 002460 666 LVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRA 743 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 743 (919)
+..|.+.|++++|+..|++.++. .| +...|..+..+|...|++++|...|+... .+.|+ ...|..++.+|.+.
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHC
T ss_conf 99999869999999999999985--99989999817898741000001247888888---71887389999999999987
Q ss_pred CCHHHHHHHHH
Q ss_conf 99899999999
Q 002460 744 GRTKEAGELIL 754 (919)
Q Consensus 744 g~~~eA~~~~~ 754 (919)
|++++|...++
T Consensus 86 ~~~~~A~~~~~ 96 (201)
T d2c2la1 86 ESYDEAIANLQ 96 (201)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 99999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4.4e-07 Score=57.99 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=60.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999986229989999999939-9999-99899999999995098799999999998309999721878999986328921
Q 002460 736 LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 736 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 813 (919)
-+..+...|++++|+..+++. ...| ++..|..+..++...|++++|...++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 99999996999999999999886199601343000110110000112100134677740220267788999999812799
Q ss_pred HHHHHHHHHHHC
Q ss_conf 499999999829
Q 002460 814 DVTSARGEMKRK 825 (919)
Q Consensus 814 ~A~~~~~~m~~~ 825 (919)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999984
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-06 Score=55.55 Aligned_cols=118 Identities=7% Similarity=-0.070 Sum_probs=61.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHH
Q ss_conf 84159999999999995984199989328999999986229989999999939-9999-998999999999950987999
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETG 781 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 781 (919)
+...|++++|.+.|..+ .+|+...|..++.++...|++++|++.+++. .+.| .+..|..+..++...|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99877999999999864-----8988999999999999858914678789999998552346678899999854249999
Q ss_pred HHHHHHHHHHCCCCC----------------CHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 999999983099997----------------218789999863289214999999998299
Q 002460 782 KWVAEKLMALEPFDS----------------SAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 782 ~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 826 (919)
...++++++..|.++ .++..++.+|...|++++|...++...+..
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999999986726736789986654363058899999999999789999999999998369
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.4e-08 Score=67.35 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 59999999998399369999999998
Q 002460 560 AWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
.|+.+...+...|+..+|+..|.+.+
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999998699999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.5e-06 Score=53.22 Aligned_cols=88 Identities=9% Similarity=-0.081 Sum_probs=45.1
Q ss_pred HHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 99986229989999999939-9999-998999999999950987999999999983099997218789999863289214
Q 002460 737 VDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDD 814 (919)
Q Consensus 737 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 814 (919)
+..+.+.|++++|+..+++. ...| +...|..+...+...|+++.|...++++++++|++..+|..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999958999999986602110001133324567888740542128888999998754466877999999999499999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999982
Q 002460 815 VTSARGEMKR 824 (919)
Q Consensus 815 A~~~~~~m~~ 824 (919)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.4e-06 Score=53.30 Aligned_cols=106 Identities=15% Similarity=-0.017 Sum_probs=81.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 999984159999999999995984199989328999999986229989999999939-9999-99899999999995098
Q 002460 700 VLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGD 777 (919)
Q Consensus 700 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 777 (919)
-...+...|++++|...|+..+.. -+.+...|..+..+|...|++++|+..++++ ...| ++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999969999999999998861--996013430001101100001121001346777402202677889999998127
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 799999999998309999721878999986
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 778 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 807 (919)
+++|...++++++++|+++.++..+.++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999999999999849898999999997838
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.9e-06 Score=51.97 Aligned_cols=103 Identities=12% Similarity=-0.057 Sum_probs=70.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 9998415999999999999598419998-9328999999986229989999999939-9999-99899999999995098
Q 002460 701 LSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGD 777 (919)
Q Consensus 701 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 777 (919)
...|...|++++|...|++.... .| +...|..+...+...|++++|...++++ ...| +...|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999958999999986602110---001133324567888740542128888999998754466877999999999499
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 79999999999830999972187899998
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 778 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 806 (919)
+++|...+++++.++|+++.++..+..+.
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999989999872999799999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=4e-06 Score=51.92 Aligned_cols=82 Identities=13% Similarity=-0.079 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999986229989999999939-9999-99899999999995098799999999998309999721878999986328
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 733 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 810 (919)
|..+..+|.+.|++++|+..+++. ...| ++..|..++.++...|+++.|...++++++++|+|+.+...+..++...+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998864211011000000010022310346777999987222999999999999729898999999999999999
Q ss_pred CCCH
Q ss_conf 9214
Q 002460 811 QWDD 814 (919)
Q Consensus 811 ~~~~ 814 (919)
...+
T Consensus 145 ~~~~ 148 (170)
T d1p5qa1 145 RQLA 148 (170)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=1.4e-06 Score=54.78 Aligned_cols=91 Identities=10% Similarity=-0.069 Sum_probs=79.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999986229989999999939-9999-99899999999995098799999999998309999721878999986328
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 733 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 810 (919)
...++..+.+.|++++|...+++. ...| ++..|..++.++...|+++.|+..++++++++|+++.++..|+.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999987605899998861011211110012335456410125877410000011111100000378999999978
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9214999999998
Q 002460 811 QWDDVTSARGEMK 823 (919)
Q Consensus 811 ~~~~A~~~~~~m~ 823 (919)
++++|.+.+++..
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2.7e-05 Score=46.68 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=78.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999984159999999999995984199989328-999999986229989999999939999999899999999995098
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH-YSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGD 777 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 777 (919)
.....+...|++++|...|.+........+.... ..... ..+ ...++..+..++...|+
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~nla~~y~k~~~ 77 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA------------QAL--------RLASHLNLAMCHLKLQA 77 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH------------HHH--------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH------------CHH--------HHHHHHHHHHHHHHHHH
T ss_conf 9999999969999999999999887510100035777640------------646--------79999999999886421
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 799999999998309999721878999986328921499999999829999890678999999999999
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRI 846 (919)
Q Consensus 778 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~ 846 (919)
++.|...++++++++|.++.++..++.+|...|++++|...++...+.... + ..+...+..+...+
T Consensus 78 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n--~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 78 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-N--KAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-C--HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C--HHHHHHHHHHHHHH
T ss_conf 101100000001002231034677799998722299999999999972989-8--99999999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=4.7e-06 Score=51.50 Aligned_cols=109 Identities=15% Similarity=-0.024 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHC-CCCCCH---HHHHHHHH
Q ss_conf 9999998415999999999999598419998932899999998622998---9999999939-999999---89999999
Q 002460 698 IGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRT---KEAGELILSM-PFEASA---SMHRALLG 770 (919)
Q Consensus 698 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~eA~~~~~~~-~~~p~~---~~~~~ll~ 770 (919)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++. ++|+.+++++ ...|++ ..|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 77988736999999999999998832--9998999999999999851267899999999999860699319999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99950987999999999983099997218789999863
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 808 (919)
+|...|++++|...++++++++|++..+..++..+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99997316999999999997690989999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=5.2e-05 Score=44.86 Aligned_cols=61 Identities=7% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999999999509879999999999830999972187899998632892149999999982
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
.+..+...+...|+++.|...++++++++|.++.+|..++.+|...|++++|...++...+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998999998640210136665544310002236777699999980479999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.19 E-value=4.1e-05 Score=45.56 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999999509879999999999830999972187899998632892149999999982
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 824 (919)
.+..++...|++++|...++++++++|.+..+|..++.+|...|++++|...++...+
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 4999987762201100022322201310488999889999882789999999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=4.1e-06 Score=51.84 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=75.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCH-------HHHHH
Q ss_conf 999999986229989999999939-9999-99899999999995098799999999998309999721-------87899
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA-------YVLLS 803 (919)
Q Consensus 733 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-------~~~l~ 803 (919)
+..++..+.+.|++++|+..+++. ...| +...+..+..++...|+++.|...++++++++|.++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999985999999999999988496458999868899988186077899999999868012788988999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998632892149999999982999989067899999999999995
Q 002460 804 NIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 804 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
.++...+++++|...++...... ++ .++...+..+...+++
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~--~~--~~~~~~l~~~~k~lke 127 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEH--RT--PDVLKKCQQAEKILKE 127 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHCC--CC--HHHHHHHHHHHHHHHC
T ss_conf 99999388999999999998459--99--9999999999999837
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=1.3e-05 Score=48.62 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH-HHHHHHHHHH
Q ss_conf 999999999950987999999999983099997218789999863289214999999998299998906-7899999999
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAKVEGL 842 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~-~~i~~~l~~l 842 (919)
++..+...+...|+++.|...++++++++|.+..+|..++.+|...|++++|...++...+.. |+ .++...+..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~----P~n~~~~~~l~~~ 144 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_conf 996199999984653011101000100000001246776899999689999999999999829----8989999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 002460 843 IKRIK 847 (919)
Q Consensus 843 ~~~~~ 847 (919)
..+++
T Consensus 145 ~~kl~ 149 (153)
T d2fbna1 145 VNKLK 149 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.15 E-value=0.00016 Score=41.82 Aligned_cols=149 Identities=10% Similarity=-0.048 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCH
Q ss_conf 9977999999999986999883679999999--841599999999999959841999893289999999862----2998
Q 002460 673 GNGEETLKLFEDMKAHGVEPDSVTFIGVLSA--CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGR----AGRT 746 (919)
Q Consensus 673 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~ 746 (919)
.+.+.|...+++..+.|.. ........... .........+...+..... ..+...+..|...+.. ..+.
T Consensus 88 ~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 2367798887655432146-68876343323787331015778887555200----111010445555640688743342
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCCCHHHHH
Q ss_conf 9999999939999999899999999995----0987999999999983099997218789999863----2892149999
Q 002460 747 KEAGELILSMPFEASASMHRALLGACRV----QGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA----ANQWDDVTSA 818 (919)
Q Consensus 747 ~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~A~~~ 818 (919)
..+...++......++.....+...+.. ..+.+.|...++++.+.. ++.++..|+.+|.. ..+.++|.++
T Consensus 163 ~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 163 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred CCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 20001221132322223322113121267654310344454676653036--8999999999998399976189999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999829999
Q 002460 819 RGEMKRKNVK 828 (919)
Q Consensus 819 ~~~m~~~~~~ 828 (919)
+++.-+.|.+
T Consensus 241 ~~kAa~~g~~ 250 (265)
T d1ouva_ 241 FKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHCCCH
T ss_conf 9999987699
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=4.6e-05 Score=45.22 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH-----HCCCCCCC
Q ss_conf 98999999999950987999999999983099997218789999863289214999999998-----29999890
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK-----RKNVKKDP 831 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~ 831 (919)
...+..+...+...|+++.|...++++++++|.+...|..++.+|...|++.+|...|+.+. +.|+.|.+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 999999999998879905789999999984985199999999999985579999999999999989984899689
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=4.3e-05 Score=45.41 Aligned_cols=86 Identities=8% Similarity=-0.052 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 328999999986229989999999939-9999-99899999999995098799999999998309999721878999986
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 730 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 807 (919)
...|..+..++.+.|++++|+..++++ .+.| ++..|..++.++...|+++.|...++++++++|+++.++..+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999899999864021013666554431000223677769999998047999999999999859899999999999999
Q ss_pred HCCCCCHH
Q ss_conf 32892149
Q 002460 808 AANQWDDV 815 (919)
Q Consensus 808 ~~g~~~~A 815 (919)
......++
T Consensus 157 ~l~~~~~~ 164 (169)
T d1ihga1 157 KIKAQKDK 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99989999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=4.5e-05 Score=45.28 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 8999999986229989999999939-9999-9989999999999509879999999999830999972187899998632
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAA 809 (919)
Q Consensus 732 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 809 (919)
.|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985989899999999999999
Q ss_pred CCCCH-HHHHHHHHH
Q ss_conf 89214-999999998
Q 002460 810 NQWDD-VTSARGEMK 823 (919)
Q Consensus 810 g~~~~-A~~~~~~m~ 823 (919)
+...+ ..+.+..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 869999999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=4.6e-05 Score=45.24 Aligned_cols=126 Identities=10% Similarity=-0.097 Sum_probs=80.8
Q ss_pred EHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 06789999965997799999999998699988367999999984159999999999995984199989328999999986
Q 002460 662 WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741 (919)
Q Consensus 662 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 741 (919)
+...+..+.+.|++.+|+..|.+.+.. .|.... ..-......... .....|..+...|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHHH-----------HHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_conf 999999999959999999999987760--730011-----------105778876310--------78899961999999
Q ss_pred HCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 229989999999939-9999-998999999999950987999999999983099997218789999863
Q 002460 742 RAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 742 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 808 (919)
+.|++++|++.++++ ...| +...|..++.++...|+++.|...++++++++|+|+.+...+..+..+
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 846530111010001000000012467768999996899999999999998298989999999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.3e-06 Score=53.46 Aligned_cols=24 Identities=4% Similarity=-0.083 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf 579899999998399999999801
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFN 551 (919)
Q Consensus 528 ~~~~~li~~~~~~g~~~~A~~~~~ 551 (919)
..++.|...|...|+..+|...|.
T Consensus 187 ~~~~~Lg~~~~~~~~~~~A~~~y~ 210 (497)
T d1ya0a1 187 QPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999998699999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=5.1e-06 Score=51.24 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q ss_conf 99999986229989999999939-9999-998999999999950---987999999999983099997--2187899998
Q 002460 734 SFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ---GDTETGKWVAEKLMALEPFDS--SAYVLLSNIF 806 (919)
Q Consensus 734 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~l~p~~~--~~~~~l~~~y 806 (919)
..++..+...+++++|++.|++. ...| ++.++..+..++... ++.++|...++++++.+|.+. .++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77988736999999999999998832999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCCCHHHHHHHHHHH
Q ss_conf 632892149999999982
Q 002460 807 AAANQWDDVTSARGEMKR 824 (919)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~ 824 (919)
...|++++|.+.++++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 997316999999999997
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.79 E-value=5.5e-05 Score=44.73 Aligned_cols=127 Identities=16% Similarity=0.045 Sum_probs=88.8
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCH
Q ss_conf 996599779999999999869998-8367999999984159999999999995984199989-32899999998622998
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRT 746 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 746 (919)
..+.|++++|+..+++.++. .| |...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCC
T ss_conf 98888999999999999997--8999999999999999879999999999999986---997389999999999834663
Q ss_pred HHHHHHHHHC--CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9999999939--999999-89999999999509879999999999830999972187
Q 002460 747 KEAGELILSM--PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 747 ~eA~~~~~~~--~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 800 (919)
+++..-.... ..+|+. ..+......+...|+.+.|...++++.++.|..+..+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 789987544420358647999999999999679989999999999833999981001
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.68 E-value=0.00018 Score=41.44 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=41.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 89999965997799999999998699988-36799999998415999999999999598419998-93289999999862
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGR 742 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 742 (919)
+...+.+.|++++|+..|++.... .|+ ...+..+..++...|++++|...++...+. .| +...+..++..|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHH
T ss_conf 999999876058999988610112--1111001233545641012587741000001111---11000003789999999
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2998999999993
Q 002460 743 AGRTKEAGELILS 755 (919)
Q Consensus 743 ~g~~~eA~~~~~~ 755 (919)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 7899999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=5.8e-05 Score=44.58 Aligned_cols=111 Identities=11% Similarity=-0.023 Sum_probs=51.3
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q ss_conf 965997799999999998699988-36799999998415----------9999999999995984199989-32899999
Q 002460 670 AQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYT----------GLVSEAYENFHLMREKYGIEPE-VEHYSFLV 737 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 737 (919)
-+.+.+++|+..|++..+ +.|+ ...+..+..++... +.+++|+..|+++.+ +.|+ ...|..++
T Consensus 8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHH
T ss_conf 987369999999999986--18831089999999998762133336778878889999999887---3012058776689
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 998622998999999993999999989999999999509879999999999830999972187899998
Q 002460 738 DALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 738 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 806 (919)
.+|...|++ .++... ..++++.|...++++++++|+++..+..|+...
T Consensus 83 ~~y~~~g~~------------~~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 83 NAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCC------------HHHHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 999870101------------135788---------988678763121100025988899999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00053 Score=38.48 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=45.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q ss_conf 78999996599779999999999869998-8367999999984159999999999995984199989-----32899999
Q 002460 664 AMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-----VEHYSFLV 737 (919)
Q Consensus 664 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li 737 (919)
.+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...++.+++...-.+. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999859999999999999884--96458999868899988186077899999999868012788988999999999
Q ss_pred HHHHHCCCHHHHHHHHHH
Q ss_conf 998622998999999993
Q 002460 738 DALGRAGRTKEAGELILS 755 (919)
Q Consensus 738 ~~~~~~g~~~eA~~~~~~ 755 (919)
..+...+++++|.+.+++
T Consensus 87 ~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHH
T ss_conf 999993889999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.57 E-value=0.0003 Score=40.06 Aligned_cols=24 Identities=0% Similarity=-0.129 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 878999986328921499999999
Q 002460 799 YVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 799 ~~~l~~~y~~~g~~~~A~~~~~~m 822 (919)
+..++.+|...|++++|...+++.
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 752699999888888889999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=6.4e-05 Score=44.32 Aligned_cols=83 Identities=11% Similarity=-0.025 Sum_probs=51.9
Q ss_pred HCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 229989999999939-9999-99899999999995----------09879999999999830999972187899998632
Q 002460 742 RAGRTKEAGELILSM-PFEA-SASMHRALLGACRV----------QGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAA 809 (919)
Q Consensus 742 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 809 (919)
|.+.+++|...+++. ...| ++..+..+..++.. .+.+++|...++++++++|+++.+|..++++|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 87369999999999986188310899999999987621333367788788899999998873012058776689999870
Q ss_pred CC-----------CCHHHHHHHHHHH
Q ss_conf 89-----------2149999999982
Q 002460 810 NQ-----------WDDVTSARGEMKR 824 (919)
Q Consensus 810 g~-----------~~~A~~~~~~m~~ 824 (919)
|+ +++|.+.+++..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 10113578898867876312110002
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.0017 Score=35.33 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=36.9
Q ss_pred EEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCCCCHHH
Q ss_conf 10678999996599779999999999869998-836799999998415999999999999598----4199989328
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE----KYGIEPEVEH 732 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 732 (919)
.+..++..+...|++++|+..++++.+ +.| +...+..++.++...|+..+|.+.|+.+.. ..|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999999887990578999999998--498519999999999998557999999999999998998489968999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.37 E-value=9.6e-05 Score=43.18 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=70.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf 84159999999999995984199989328999999986229989999999939-99999-98999999999950987999
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETG 781 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 781 (919)
....|++++|...+++..+. -+-+...+..++.+|++.|++++|...++.. ...|+ ...+..+.......+..+.+
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 98888999999999999997--8999999999999999879999999999999986997389999999999834663789
Q ss_pred HHHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 99999998-309999721878999986328921499999999829
Q 002460 782 KWVAEKLM-ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 782 ~~~~~~~~-~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 825 (919)
........ ..+|.+...+...+.++...|++++|...++...+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 987544420358647999999999999679989999999999833
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.003 Score=33.71 Aligned_cols=33 Identities=9% Similarity=-0.171 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999950987999999999983099997
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 796 (919)
.+..+..++...|++++|...+++++++.|+..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 775269999988888888999999998668742
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.001 Score=36.70 Aligned_cols=77 Identities=18% Similarity=0.038 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC----C----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 328999999986229989999999939----9----9999-989999999999509879999999999830999972187
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM----P----FEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 730 ~~~~~~li~~~~~~g~~~eA~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 800 (919)
...+-.++..+.+.|++++|...+++. + ..++ ..++..+..++...|++++|...++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999997799999999999999886530147647899998726888657739888788779886929799999
Q ss_pred HHHHHH
Q ss_conf 899998
Q 002460 801 LLSNIF 806 (919)
Q Consensus 801 ~l~~~y 806 (919)
.+..+.
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.26 E-value=0.0036 Score=33.23 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=44.2
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98981599889999983089999111999999999279915999999997878999897589999999703176588999
Q 002460 434 DVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQ 513 (919)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 513 (919)
+.+.+.|.++.|..+|..+. .|..++..+.+.++++.|.+.+.+.. +..++..+..+|........+
T Consensus 22 ~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-- 88 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-- 88 (336)
T ss_dssp -------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHCCCHHHHHHHHHHCC-----CHHHHHHHHHHHCCHHHHHHHHHHCC------CHHHHHHHHHHHHHCCHHHHH--
T ss_conf 99987877999999998678-----99999999970315999999998808------899999999999727287899--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHC
Q ss_conf 99999990998881579899999998399999999801099---99842599999999983
Q 002460 514 MHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIP---APDDVAWTTMISGCVDN 571 (919)
Q Consensus 514 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 571 (919)
.+.......+......++..|-..|..++...+++... ..+...++.++..|++.
T Consensus 89 ---~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 89 ---QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp ---HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf ---9999875357887899999998769859999999999757744467999999999986
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.16 E-value=0.0045 Score=32.61 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=7.1
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 99927991599999999787
Q 002460 466 GYILSNNSHKALELFSHMHT 485 (919)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~ 485 (919)
.+.+.+++++|+..|++..+
T Consensus 11 ~~~~~~d~~~A~~~~~kAa~ 30 (265)
T d1ouva_ 11 KSYKEKDFTQAKKYFEKACD 30 (265)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 99987799999999999997
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.95 E-value=0.0071 Score=31.36 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=6.3
Q ss_pred HHHHHHHHCCCHHHHHHHH
Q ss_conf 9999987079914799985
Q 002460 93 NLMTMYSRCGSLVYARRLF 111 (919)
Q Consensus 93 ~Li~~y~~~g~~~~A~~~f 111 (919)
.++..|.+.+++..|...+
T Consensus 45 rl~~~~v~l~~~~~avd~~ 63 (336)
T d1b89a_ 45 RLASTLVHLGEYQAAVDGA 63 (336)
T ss_dssp HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHH
T ss_conf 9999997031599999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.011 Score=30.22 Aligned_cols=61 Identities=11% Similarity=-0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 99999999950987999999999983099997-------21878999986328921499999999829
Q 002460 765 HRALLGACRVQGDTETGKWVAEKLMALEPFDS-------SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 765 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 825 (919)
+..++..+...|+++.|...+++++++.|.++ .++..|+.+|.+.|++++|...++++.+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999997799999999999999886530147647899998726888657739888788779886
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.89 E-value=0.38 Score=20.42 Aligned_cols=16 Identities=0% Similarity=0.081 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9779999999999869
Q 002460 674 NGEETLKLFEDMKAHG 689 (919)
Q Consensus 674 ~~~~A~~~~~~m~~~g 689 (919)
+.++|+..|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 9999999999999879
|