Citrus Sinensis ID: 002477

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------
MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGGIKTTANHEDIELPDESDSEEEEKVEIAQKDVPSAVYGGLARKREGSEEDGDNSADANGKDGESRLGALARLKRLKQA
cccccccccccccHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHcccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHc
ccccHHccccHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHcccccEEEcccccHHHccHcHcccHHHcccccccccccccccEEEEccccHHHHccHHHHHcccccccccccHccccccccccHHHHHHHHHHcc
maiskelypseddlLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVknlpithpeyetLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRalcalpvtqhDRIWEIYLRFVeqegipietSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVlnddqfysikgktKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKmakpdlsveeeeddeehgsaededirlDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLlrqnphnveQWHRRVKifegnptkqiltyteavrtvdpmkavgkpHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRvaadgnepvqMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVkifkyphvKDIWVTYLSKFVKRYGKTKLERARELFENAVetapadavkPLYLQYAKLEEDYGLAKRAMKVYDQatkavpnheklgMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFasqfadprsdtefwNRWHEFevnhgnedTFREMLRIKRSVsasysqthfilpeylmqkdqrlSIDDAKDKLKQAGVHEDEMAALERQLapaanngnakdssrkvgfvsagvesqtdggikttanhedielpdesdseeEEKVEIAqkdvpsavygglarkregseedgdnsadangkdgeSRLGALARLKRLKQA
maiskelypseddLLYEEELLRNPFSLKLWWRYLVAKreapfkkrFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLrfveqegipietsLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLAsvlnddqfysiKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEeeeddeehgsaededirlDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRrvkifegnptkqiLTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRrataepsvevrrrvaadgnepvqmklhkslRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKifkyphvkdIWVTYLSKFVKRYGKTKLERARELFEnavetapadavkPLYLQYAKLEEDYGLAKRAMKVYDQAtkavpnheklGMYEIYIARAAEIFGVPKTREIYEQAiesglpdkdvKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEvnhgnedtfREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLApaanngnakdssrKVGFVSagvesqtdggikttanhedielpdesdseEEEKVeiaqkdvpsavyGGLARkregseedgdnsadangkdgesrlGALARLKRLKQA
MAISKelypseddllyeeellRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVeeeeddeehgsaededIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGGIKTTANHedielpdesdseeeekveIAQKDVPSAVYGGLARKREGSEEDGDNSADANGKDGESrlgalarlkrlkQA
*************LLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV****************************RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR*********************VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ******************************************************************************************************************************************
****KELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQ*L******************MAALERQ**************************************EDIEL********************SAV***********************************LKRL***
MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAK******************DEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAP***********RKVGFVSAGVESQTDGGIKTTANHEDI****************AQKDVPSAVYGGLARK****************KDGESRLGALARLKRLKQA
*AISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAAN***************************************E*D*E*EEKVEIAQKDVPSAVYGGLAR************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDxxxxxxxxxxxxxxxxxxxxxLAPAANNGNAKDSSRKVGFVSAGVESQTDGGIKTTANHEDIELPDESDSEEEEKVEIAQKDVPSAVYGGLARKREGSEEDGDNSADANGKDGESRLGALARLKRLKQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query917 2.2.26 [Sep-21-2011]
Q9DCD2855 Pre-mRNA-splicing factor yes no 0.889 0.954 0.510 0.0
Q99PK0855 Pre-mRNA-splicing factor yes no 0.889 0.954 0.510 0.0
Q9HCS7855 Pre-mRNA-splicing factor yes no 0.889 0.954 0.507 0.0
Q54Z08850 Pre-mRNA-splicing factor yes no 0.781 0.843 0.477 0.0
Q7SAK5829 Pre-mRNA-splicing factor N/A no 0.865 0.957 0.453 0.0
Q4WVF4839 Pre-mRNA-splicing factor yes no 0.847 0.926 0.456 0.0
Q5BH69851 Pre-mRNA-splicing factor yes no 0.871 0.938 0.436 0.0
Q52DF3832 Pre-mRNA-splicing factor N/A no 0.844 0.930 0.454 0.0
Q9P7R9790 Pre-mRNA-splicing factor yes no 0.826 0.959 0.422 0.0
P0CO081031 Pre-mRNA-splicing factor yes no 0.627 0.557 0.456 1e-152
>sp|Q9DCD2|SYF1_MOUSE Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1 Back     alignment and function desciption
 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/869 (51%), Positives = 597/869 (68%), Gaps = 53/869 (6%)

Query: 20  LLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
           ++RN FS+K W RY+  K+ AP  +   +YERALK LP SYKLW+ YL  R + VK+  +
Sbjct: 28  IMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCV 87

Query: 80  THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
           T P YE +NN  ERA V MHKMPR+W+ Y + L  Q  +T  RRTFDRAL ALP+TQH R
Sbjct: 88  TDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSR 147

Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
           IW +YLRF+    +P ET++R YRR+LK  P   E++IE+L  S    EAA+RLA+V+ND
Sbjct: 148 IWPLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVND 206

Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
           ++F S  GK+ ++LW ELCDL++ +  ++  LNVDAIIRGG+ +FTD++G+LW SLADYY
Sbjct: 207 ERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYY 266

Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEE 319
           IR   FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM          E   E
Sbjct: 267 IRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM----------ETASE 316

Query: 320 HGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379
            G  E++D+                         D++LRLAR E L++RRP L NSVLLR
Sbjct: 317 LGREEEDDV-------------------------DLELRLARFEQLISRRPLLLNSVLLR 351

Query: 380 QNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDI 439
           QNPH+V +WH+RV + +G P + I TYTEAV+TVDP KA GKPHTLWVAFAK YE    +
Sbjct: 352 QNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQL 411

Query: 440 ANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499
            +ARVI +KA +VN+K VD LAS+WC+  E+ELRH+N+  AL+L+R+ATA P+   RR  
Sbjct: 412 DDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPA---RRAE 468

Query: 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559
             DG+EPVQ +++KSL++W+   DLEESLG  +ST+AVY+RILDLRIATPQI+INYA+ L
Sbjct: 469 YFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL 528

Query: 560 EEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619
           EEHKYFE++F+ YERG+ +FK+P+V DIW TYL+KF+ RYG  KLERAR+LFE A++  P
Sbjct: 529 EEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCP 588

Query: 620 ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKT 679
               K LYL YA+LEE++GLA+ AM VYD+AT+AV   ++  M+ IYI RAAEI+GV  T
Sbjct: 589 PKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHT 648

Query: 680 REIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRW 739
           R IY++AIE  L D+  + MCL++A++E  LGEIDRAR IY F SQ  DPR+   FW  W
Sbjct: 649 RGIYQKAIEV-LSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTW 707

Query: 740 HEFEVNHGNEDTFREMLRIKRSVSASY-SQTHFILPEYL-MQKDQRLSIDDAKDKLKQAG 797
            +FEV HGNEDT REMLRI+RSV A+Y +Q +F+  + L +      ++ D      Q+G
Sbjct: 708 KDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAP--GQSG 765

Query: 798 VHEDEMAALER---QLAPAANNGNAKDSSRKVGFVSAGVESQTDGGIKTTANHEDIELPD 854
           +  D+M  LE+   QLA  A       +  K+ FV +    +    +   AN E+I+L +
Sbjct: 766 M--DDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGE 823

Query: 855 ESDSEEE----EKVEIAQKDVPSAVYGGL 879
           + D +E      +V + Q+ VP+AV+G L
Sbjct: 824 DEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Involved in transcription-coupled repair (TCR), transcription and pre-mRNA splicing.
Mus musculus (taxid: 10090)
>sp|Q99PK0|SYF1_RAT Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1 Back     alignment and function description
>sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2 Back     alignment and function description
>sp|Q54Z08|SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2 PE=3 SV=1 Back     alignment and function description
>sp|Q7SAK5|SYF1_NEUCR Pre-mRNA-splicing factor syf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=syf-1 PE=3 SV=1 Back     alignment and function description
>sp|Q4WVF4|SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf1 PE=3 SV=1 Back     alignment and function description
>sp|Q5BH69|SYF1_EMENI Pre-mRNA-splicing factor syf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf1 PE=3 SV=1 Back     alignment and function description
>sp|Q52DF3|SYF1_MAGO7 Pre-mRNA-splicing factor SYF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SYF1 PE=3 SV=2 Back     alignment and function description
>sp|Q9P7R9|SYF1_SCHPO Pre-mRNA-splicing factor cwf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf3 PE=1 SV=1 Back     alignment and function description
>sp|P0CO08|SYF1_CRYNJ Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SYF1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query917
255560840916 XPA-binding protein, putative [Ricinus c 0.996 0.997 0.860 0.0
449433880912 PREDICTED: pre-mRNA-splicing factor SYF1 0.990 0.995 0.851 0.0
224076810908 predicted protein [Populus trichocarpa] 0.989 0.998 0.850 0.0
356555040918 PREDICTED: pre-mRNA-splicing factor SYF1 0.995 0.994 0.836 0.0
356549407919 PREDICTED: pre-mRNA-splicing factor SYF1 0.995 0.993 0.833 0.0
147766668920 hypothetical protein VITISV_003952 [Viti 0.997 0.994 0.828 0.0
357446341925 Pre-mRNA-splicing factor SYF1 [Medicago 0.991 0.982 0.807 0.0
15241911917 pre-mRNA-splicing factor SYF1 [Arabidops 0.990 0.990 0.788 0.0
297808885928 hypothetical protein ARALYDRAFT_489660 [ 0.990 0.978 0.770 0.0
414887883928 TPA: hypothetical protein ZEAMMB73_98438 0.978 0.966 0.668 0.0
>gi|255560840|ref|XP_002521433.1| XPA-binding protein, putative [Ricinus communis] gi|223539332|gb|EEF40923.1| XPA-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1638 bits (4242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/919 (86%), Positives = 848/919 (92%), Gaps = 5/919 (0%)

Query: 1   MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY 60
           M+I +ELYPS+DDLLYEEELLRNPFSLKLWWRYLVA+RE+PFKKRF+IYERALKALPGSY
Sbjct: 1   MSIPRELYPSQDDLLYEEELLRNPFSLKLWWRYLVARRESPFKKRFIIYERALKALPGSY 60

Query: 61  KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120
           KLWHAYL ERL IV+NLP+TH +YETLNNTFERALVTMHKMPRIWIMYL+ LT+QK IT+
Sbjct: 61  KLWHAYLTERLEIVRNLPVTHSQYETLNNTFERALVTMHKMPRIWIMYLQILTNQKLITR 120

Query: 121 ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
            R+ FDRALCALPVTQHDRIWE+YLRFV QEGIPIETSLRVYRRYLKYDPSHIEDFIEFL
Sbjct: 121 TRKNFDRALCALPVTQHDRIWELYLRFVSQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180

Query: 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240
           V S LWQEAAERLASVLNDDQFYSIKGKTKH LWLELCDLLT HA E+SGLNVDAIIRGG
Sbjct: 181 VNSHLWQEAAERLASVLNDDQFYSIKGKTKHSLWLELCDLLTRHAKEVSGLNVDAIIRGG 240

Query: 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
           IRKFTDEVGRLWTSLADYYIRR LFEKARDIFEEGM TVVTVRDFSVIFD+YSQFEE MV
Sbjct: 241 IRKFTDEVGRLWTSLADYYIRRGLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV 300

Query: 301 SAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360
           + KM   DLS +E E  EE G  +DED+RL+VN   ++F KK+LNGFWLH+  DVDL LA
Sbjct: 301 AHKMESLDLSDDEGEALEESGDEKDEDVRLEVN---SKFEKKMLNGFWLHEDNDVDLMLA 357

Query: 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG 420
           RLE+LM+RRPELANSVLLRQNPHNVEQWHRRVK+FEGNPTKQILTYTEAVRTVDPMKAVG
Sbjct: 358 RLEYLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVG 417

Query: 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
           KPHTLWVAFAKLYE + D+ NARVIFDKAVQVNYKTVD+LASIWCEWAEMELRH+NF GA
Sbjct: 418 KPHTLWVAFAKLYENHNDLVNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHQNFSGA 477

Query: 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
           LEL+RRATAEPSVEV+RRVAADGNEPVQMK+HK LRLWTFYVDLEE LG+LESTRAVYER
Sbjct: 478 LELLRRATAEPSVEVKRRVAADGNEPVQMKVHKCLRLWTFYVDLEEGLGDLESTRAVYER 537

Query: 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600
           ILDL+IATPQIIIN+ALLLEEHKYFEDAF+VYERGVKIFKYPHVKDIWVTYLSKFVKRYG
Sbjct: 538 ILDLKIATPQIIINFALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 597

Query: 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660
           KTKLERARELFE+A++ APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN EKL
Sbjct: 598 KTKLERARELFEHAIDMAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNTEKL 657

Query: 661 GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720
            MYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK MCLKYA+LEK+LGEIDRARGIY
Sbjct: 658 EMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAKLEKNLGEIDRARGIY 717

Query: 721 VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK 780
           VFASQF+DPRSD +FWN WHEFEV HGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
Sbjct: 718 VFASQFSDPRSDADFWNEWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK 777

Query: 781 DQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGG 840
           DQRL+ID+AKDKLK AGV EDEMAALERQLAP ANN  AKDSSRKVGFVSAGVESQ DG 
Sbjct: 778 DQRLNIDEAKDKLKLAGVPEDEMAALERQLAPVANNNTAKDSSRKVGFVSAGVESQNDGV 837

Query: 841 IKTTANHEDIELPDESDSEEEEKVEIAQKDVPSAVYGGLARKREGSEED--GDNSADANG 898
           IK  AN EDIELP+ESDSE++EKVEI QKDVPSAV+GGLARKRE  E D  G+++  A  
Sbjct: 838 IKVNANQEDIELPEESDSEDDEKVEITQKDVPSAVFGGLARKREEVESDEAGNHATAAKD 897

Query: 899 KDGESRLGALARLKRLKQA 917
           KDGE  LGALAR+KR +QA
Sbjct: 898 KDGEGPLGALARMKRQRQA 916

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449433880|ref|XP_004134724.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224076810|ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|222847967|gb|EEE85514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555040|ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max] Back     alignment and taxonomy information
>gi|356549407|ref|XP_003543085.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max] Back     alignment and taxonomy information
>gi|147766668|emb|CAN65069.1| hypothetical protein VITISV_003952 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357446341|ref|XP_003593448.1| Pre-mRNA-splicing factor SYF1 [Medicago truncatula] gi|355482496|gb|AES63699.1| Pre-mRNA-splicing factor SYF1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15241911|ref|NP_198226.1| pre-mRNA-splicing factor SYF1 [Arabidopsis thaliana] gi|7682783|gb|AAF67364.1| Hypothetical protein T32B20.g [Arabidopsis thaliana] gi|332006447|gb|AED93830.1| pre-mRNA-splicing factor SYF1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297808885|ref|XP_002872326.1| hypothetical protein ARALYDRAFT_489660 [Arabidopsis lyrata subsp. lyrata] gi|297318163|gb|EFH48585.1| hypothetical protein ARALYDRAFT_489660 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|414887883|tpg|DAA63897.1| TPA: hypothetical protein ZEAMMB73_984385 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query917
TAIR|locus:2184236917 AT5G28740 [Arabidopsis thalian 0.974 0.974 0.761 0.0
DICTYBASE|DDB_G0277977850 xab2 "TPR-like helical domain- 0.500 0.54 0.465 1.3e-200
ZFIN|ZDB-GENE-040426-685851 xab2 "XPA binding protein 2" [ 0.563 0.607 0.525 2.9e-148
FB|FBgn0033859883 CG6197 [Drosophila melanogaste 0.519 0.539 0.535 1.2e-140
MGI|MGI:1914689855 Xab2 "XPA binding protein 2" [ 0.567 0.608 0.516 2.1e-139
RGD|621217855 Xab2 "XPA binding protein 2" [ 0.567 0.608 0.516 2.1e-139
UNIPROTKB|F6RY07855 XAB2 "Uncharacterized protein" 0.567 0.608 0.514 9.2e-139
UNIPROTKB|F1SCH5855 XAB2 "Uncharacterized protein" 0.567 0.608 0.514 1.2e-138
UNIPROTKB|E2RPV4855 XAB2 "Uncharacterized protein" 0.567 0.608 0.513 3.1e-138
UNIPROTKB|F5H315852 XAB2 "Pre-mRNA-splicing factor 0.567 0.610 0.511 8.3e-138
TAIR|locus:2184236 AT5G28740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3525 (1245.9 bits), Expect = 0., P = 0.
 Identities = 685/900 (76%), Positives = 757/900 (84%)

Query:     1 MAISKXXXXXXXXXXXXXXXXRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY 60
             MAISK                RN FSLKLWWRYL+AK E+PFKKRF+IYERALKALPGSY
Sbjct:     1 MAISKDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY 60

Query:    61 KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120
             KLW+AYL ERL IV+NLP+THP+Y++LNNTFER LVTMHKMPRIW+MYL+TLT Q+ IT+
Sbjct:    61 KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVMYLQTLTVQQLITR 120

Query:   121 ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
              RRTFDRALCALPVTQHDRIWE YL FV Q GIPIETSLRVYRRYL YDPSHIE+FIEFL
Sbjct:   121 TRRTFDRALCALPVTQHDRIWEPYLVFVSQNGIPIETSLRVYRRYLMYDPSHIEEFIEFL 180

Query:   181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240
             VKS+ WQE+AERLASVLNDD+FYSIKGKTKH+LWLELC+LL  HA  ISGLNVDAIIRGG
Sbjct:   181 VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGG 240

Query:   241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
             IRKFTDEVG LWTSLADYYIR+ L EKARDI+EEGMM VVTVRDFSVIFD YS+FEE  V
Sbjct:   241 IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV 300

Query:   301 SAKMAKPDLSVXXXXXXXXXXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360
             + KM     S                 +RL+ NLS+ E  +K+LNGFWL+D  DVDLRLA
Sbjct:   301 AKKMEMMSSSDEEDENEENGVEDDEEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA 360

Query:   361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG 420
             RLE LMNRRP LANSVLLRQNPHNVEQWHRRVKIFEGN  KQILTYTEAVRTVDPMKAVG
Sbjct:   361 RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVG 420

Query:   421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
             KPHTLWVAFAKLYE +KD+ N RVIFDKAVQVNYKTVDHLAS+WCEWAEMELRHKNFKGA
Sbjct:   421 KPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA 480

Query:   481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
             LELMRRATA P+VEVRRRVAADGNEPVQMKLH+SLRLW+FYVDLEESLG LESTRAVYE+
Sbjct:   481 LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK 540

Query:   541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600
             ILDLRIATPQII+NYA LLEE+KYFEDAF+VYERGVKIFKYPHVKDIWVTYL+KFVKRYG
Sbjct:   541 ILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG 600

Query:   601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660
             KTKLERARELFE+AV  AP+DAV+ LYLQYAKLEEDYGLAKRAMKVY++ATK VP  +KL
Sbjct:   601 KTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKL 660

Query:   661 GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720
              MYEIYI+RAAEIFGVP+TREIYEQAIESGLP KDVK MC+K+AELE+SLGEIDRAR +Y
Sbjct:   661 EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALY 720

Query:   721 VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK 780
              ++SQFADPRSD EFWN+WHEFEV HGNEDT+REMLRIKRSVSASYSQTHFILPE +MQK
Sbjct:   721 KYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQK 780

Query:   781 DQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGN-AKDSSRKVGFVSAGVESQT-- 837
             D+ L ++DAK +LK+AG+ EDEMAALERQL         AKD  R+VGFVSAGV SQ+  
Sbjct:   781 DKLLDVEDAKGELKRAGLPEDEMAALERQLLSTTTPTEPAKDGGRRVGFVSAGVISQSGE 840

Query:   838 DGGIKTTANHXXXXX--XXXXXXXXXXXXXIAQKDVPSAVYGGLARKR-EGSEEDGDNSA 894
             + G   T N                     I+QK+VP+AV+GGLARKR E  EE G++ A
Sbjct:   841 NEGKPVTGNGEDIELPDESDDESDGDDHVEISQKEVPAAVFGGLARKRDEDGEEAGEDGA 900
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006396 "RNA processing" evidence=IEA
DICTYBASE|DDB_G0277977 xab2 "TPR-like helical domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-685 xab2 "XPA binding protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0033859 CG6197 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1914689 Xab2 "XPA binding protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621217 Xab2 "XPA binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F6RY07 XAB2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCH5 XAB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPV4 XAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H315 XAB2 "Pre-mRNA-splicing factor SYF1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4WVF4SYF1_ASPFUNo assigned EC number0.45690.84730.9261yesno
Q9DCD2SYF1_MOUSENo assigned EC number0.51090.88980.9543yesno
Q9HCS7SYF1_HUMANNo assigned EC number0.50740.88980.9543yesno
Q99PK0SYF1_RATNo assigned EC number0.51090.88980.9543yesno
Q5BH69SYF1_EMENINo assigned EC number0.43690.87130.9388yesno
Q9P7R9SYF1_SCHPONo assigned EC number0.42210.82660.9594yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query917
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 0.001
COG5107660 COG5107, RNA14, Pre-mRNA 3'-end processing (cleava 0.001
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information 
 Score = 38.9 bits (91), Expect = 0.001
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609
           + ++N   L  +   +++A   YE+ +++   P   D +   L+    + G  K E A E
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAY-YNLAAAYYKLG--KYEEALE 55

Query: 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656
            +E A+E  P +A    Y          G  + A++ Y++A +  PN
Sbjct: 56  DYEKALELDPDNA--KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100
>gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 917
KOG2047835 consensus mRNA splicing factor [RNA processing and 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
KOG2047835 consensus mRNA splicing factor [RNA processing and 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.97
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.97
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.96
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.96
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.95
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.94
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 99.94
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.94
PLN03077857 Protein ECB2; Provisional 99.93
PLN03077857 Protein ECB2; Provisional 99.93
KOG1914656 consensus mRNA cleavage and polyadenylation factor 99.93
KOG1914656 consensus mRNA cleavage and polyadenylation factor 99.91
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.9
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.89
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.88
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.88
PLN032181060 maturation of RBCL 1; Provisional 99.87
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.87
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.87
KOG2076895 consensus RNA polymerase III transcription factor 99.85
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.85
KOG0547606 consensus Translocase of outer mitochondrial membr 99.83
PLN032181060 maturation of RBCL 1; Provisional 99.83
PRK11788389 tetratricopeptide repeat protein; Provisional 99.82
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.82
KOG1258577 consensus mRNA processing protein [RNA processing 99.82
KOG0547606 consensus Translocase of outer mitochondrial membr 99.81
PRK11788389 tetratricopeptide repeat protein; Provisional 99.81
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.8
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.79
KOG1258577 consensus mRNA processing protein [RNA processing 99.77
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.76
KOG2076895 consensus RNA polymerase III transcription factor 99.76
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.74
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.74
PRK14574822 hmsH outer membrane protein; Provisional 99.74
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.73
KOG1126638 consensus DNA-binding cell division cycle control 99.73
PRK14574822 hmsH outer membrane protein; Provisional 99.73
KOG1126638 consensus DNA-binding cell division cycle control 99.69
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.68
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.67
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.63
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.63
PRK12370553 invasion protein regulator; Provisional 99.61
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.61
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.6
KOG2003840 consensus TPR repeat-containing protein [General f 99.6
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.6
PRK12370553 invasion protein regulator; Provisional 99.58
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.56
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.56
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.56
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.55
PRK11189296 lipoprotein NlpI; Provisional 99.55
KOG11271238 consensus TPR repeat-containing protein [RNA proce 99.55
PRK11189296 lipoprotein NlpI; Provisional 99.54
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.54
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.54
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.54
KOG0128881 consensus RNA-binding protein SART3 (RRM superfami 99.53
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.52
KOG11271238 consensus TPR repeat-containing protein [RNA proce 99.51
KOG2003840 consensus TPR repeat-containing protein [General f 99.49
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.49
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.48
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.46
KOG1129478 consensus TPR repeat-containing protein [General f 99.46
KOG1129478 consensus TPR repeat-containing protein [General f 99.44
KOG1125579 consensus TPR repeat-containing protein [General f 99.43
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 99.43
PLN02789320 farnesyltranstransferase 99.41
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 99.39
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.36
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.36
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.35
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.35
KOG1125579 consensus TPR repeat-containing protein [General f 99.34
PLN02789320 farnesyltranstransferase 99.34
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.34
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.3
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.28
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.27
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.26
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.24
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.18
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.15
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 99.14
PRK10370198 formate-dependent nitrite reductase complex subuni 99.11
KOG2376652 consensus Signal recognition particle, subunit Srp 99.1
PRK15359144 type III secretion system chaperone protein SscB; 99.07
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.07
PRK15359144 type III secretion system chaperone protein SscB; 99.06
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.04
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.02
KOG1128777 consensus Uncharacterized conserved protein, conta 99.01
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.0
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.99
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.98
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.98
PRK10370198 formate-dependent nitrite reductase complex subuni 98.95
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.91
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.91
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.9
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.9
KOG2376652 consensus Signal recognition particle, subunit Srp 98.9
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.89
KOG1128777 consensus Uncharacterized conserved protein, conta 98.89
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.86
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.84
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.83
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.8
COG5191435 Uncharacterized conserved protein, contains HAT (H 98.8
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.72
PRK04841903 transcriptional regulator MalT; Provisional 98.71
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.7
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.69
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 98.67
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.63
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.62
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.6
KOG0553304 consensus TPR repeat-containing protein [General f 98.56
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.53
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.51
KOG0553304 consensus TPR repeat-containing protein [General f 98.47
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.47
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.45
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.44
PRK04841903 transcriptional regulator MalT; Provisional 98.44
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.39
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.36
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.31
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.29
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.28
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.28
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.27
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.24
COG3898531 Uncharacterized membrane-bound protein [Function u 98.24
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.23
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.16
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.13
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.12
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.11
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.09
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.09
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.08
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.08
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.05
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.03
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.03
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.03
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.02
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.01
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.0
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.96
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.94
COG5191435 Uncharacterized conserved protein, contains HAT (H 97.94
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.93
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.92
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 97.87
COG3898531 Uncharacterized membrane-bound protein [Function u 97.86
PRK11906458 transcriptional regulator; Provisional 97.84
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.84
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 97.83
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.83
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.81
KOG4340459 consensus Uncharacterized conserved protein [Funct 97.8
PRK11906458 transcriptional regulator; Provisional 97.8
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.78
PRK10803263 tol-pal system protein YbgF; Provisional 97.77
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.76
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.75
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.75
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.73
COG4105254 ComL DNA uptake lipoprotein [General function pred 97.71
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.67
COG4700251 Uncharacterized protein conserved in bacteria cont 97.66
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 97.64
PRK10803263 tol-pal system protein YbgF; Provisional 97.64
COG4700251 Uncharacterized protein conserved in bacteria cont 97.6
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 97.6
PF12688120 TPR_5: Tetratrico peptide repeat 97.6
PF1337173 TPR_9: Tetratricopeptide repeat 97.6
PRK15331165 chaperone protein SicA; Provisional 97.57
PF1337173 TPR_9: Tetratricopeptide repeat 97.55
PF1342844 TPR_14: Tetratricopeptide repeat 97.42
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.38
PF12688120 TPR_5: Tetratrico peptide repeat 97.35
PF1342844 TPR_14: Tetratricopeptide repeat 97.35
PRK15331165 chaperone protein SicA; Provisional 97.3
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.24
KOG1941518 consensus Acetylcholine receptor-associated protei 97.22
KOG4648536 consensus Uncharacterized conserved protein, conta 97.21
KOG4340459 consensus Uncharacterized conserved protein [Funct 97.16
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.08
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.08
KOG4555175 consensus TPR repeat-containing protein [Function 97.08
PF13512142 TPR_18: Tetratricopeptide repeat 97.06
KOG3616 1636 consensus Selective LIM binding factor [Transcript 97.05
PF1343134 TPR_17: Tetratricopeptide repeat 97.03
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.03
KOG1586288 consensus Protein required for fusion of vesicles 97.02
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.98
KOG2796366 consensus Uncharacterized conserved protein [Funct 96.97
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.89
KOG2471696 consensus TPR repeat-containing protein [General f 96.89
PF13512142 TPR_18: Tetratricopeptide repeat 96.88
KOG1941518 consensus Acetylcholine receptor-associated protei 96.86
KOG4234271 consensus TPR repeat-containing protein [General f 96.85
PF06552186 TOM20_plant: Plant specific mitochondrial import r 96.85
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.8
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.78
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 96.75
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.75
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 96.7
KOG4555175 consensus TPR repeat-containing protein [Function 96.69
KOG2796366 consensus Uncharacterized conserved protein [Funct 96.69
KOG1585308 consensus Protein required for fusion of vesicles 96.62
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.51
KOG0530318 consensus Protein farnesyltransferase, alpha subun 96.5
COG4105254 ComL DNA uptake lipoprotein [General function pred 96.5
KOG2610491 consensus Uncharacterized conserved protein [Funct 96.44
KOG4234271 consensus TPR repeat-containing protein [General f 96.41
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.37
KOG4648536 consensus Uncharacterized conserved protein, conta 96.33
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 96.3
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 96.25
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 96.24
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 96.23
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 96.15
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.13
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 96.13
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.13
PF06552186 TOM20_plant: Plant specific mitochondrial import r 96.11
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 95.98
PF1343134 TPR_17: Tetratricopeptide repeat 95.86
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 95.73
KOG0530318 consensus Protein farnesyltransferase, alpha subun 95.72
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 95.65
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.65
PF03704146 BTAD: Bacterial transcriptional activator domain; 95.45
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 95.44
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 95.43
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 95.43
KOG1585308 consensus Protein required for fusion of vesicles 95.38
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 95.23
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.22
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 95.21
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 94.98
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 94.93
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 94.54
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 94.47
COG3118304 Thioredoxin domain-containing protein [Posttransla 94.41
PF03704146 BTAD: Bacterial transcriptional activator domain; 94.41
KOG20411189 consensus WD40 repeat protein [General function pr 94.35
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 94.27
KOG1586288 consensus Protein required for fusion of vesicles 94.22
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 94.15
COG3118304 Thioredoxin domain-containing protein [Posttransla 94.1
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 93.77
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 93.76
KOG2053932 consensus Mitochondrial inheritance and actin cyto 93.74
COG2976207 Uncharacterized protein conserved in bacteria [Fun 93.63
COG2976207 Uncharacterized protein conserved in bacteria [Fun 93.27
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 93.24
KOG1550552 consensus Extracellular protein SEL-1 and related 93.16
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 93.08
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 93.02
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 92.76
KOG2610491 consensus Uncharacterized conserved protein [Funct 92.59
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 92.19
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 92.13
KOG15381081 consensus Uncharacterized conserved protein WDR10, 91.68
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 91.31
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 91.29
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 91.05
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 90.9
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 90.74
KOG09851666 consensus Vesicle coat protein clathrin, heavy cha 90.64
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 90.61
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 90.39
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 90.17
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 90.05
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 89.86
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 89.55
KOG20411189 consensus WD40 repeat protein [General function pr 89.35
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 89.34
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 89.06
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 89.0
KOG1550552 consensus Extracellular protein SEL-1 and related 88.75
COG4976287 Predicted methyltransferase (contains TPR repeat) 88.4
KOG2422665 consensus Uncharacterized conserved protein [Funct 87.72
KOG4507 886 consensus Uncharacterized conserved protein, conta 87.23
COG4976287 Predicted methyltransferase (contains TPR repeat) 86.91
PF09986214 DUF2225: Uncharacterized protein conserved in bact 85.62
KOG2471696 consensus TPR repeat-containing protein [General f 85.17
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 84.75
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 84.2
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 84.16
PF1304150 PPR_2: PPR repeat family 83.86
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 83.41
PRK10941269 hypothetical protein; Provisional 82.82
KOG4507886 consensus Uncharacterized conserved protein, conta 82.07
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 81.48
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 80.52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-170  Score=1357.87  Aligned_cols=828  Identities=58%  Similarity=0.983  Sum_probs=777.7

Q ss_pred             CCccCCCCCCCcchHHHHHHhhCCCChHHHHHHHHHHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCC
Q 002477            1 MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT   80 (917)
Q Consensus         1 ~~~~~~~~~~~~~~~~E~~l~~~P~~~~~W~~yi~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~   80 (917)
                      +..++++.+.++|++||++|+|||+|+++|+|||+++++.+.+.++++|||||+.+|+|+++|+.||..+...+++.|++
T Consensus         1 ~~~n~dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T   80 (835)
T KOG2047|consen    1 VIENVDLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPT   80 (835)
T ss_pred             CCCCccccccccccchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHH
Q 002477           81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR  160 (917)
Q Consensus        81 ~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~  160 (917)
                      .+.|..++++|+|||..+|+||+||++||+|+++|+++|++|++|+|||+++|++||.+||.+|++|+.+++.| +++++
T Consensus        81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~r  159 (835)
T KOG2047|consen   81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIR  159 (835)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhh
Q 002477          161 VYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG  240 (917)
Q Consensus       161 ~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~  240 (917)
                      +|+|||++.|.+.++||++|...+++++|++.|..++|++.|.|..|++++++|.++|+++.++|+.+.+++++++||+|
T Consensus       160 vyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g  239 (835)
T KOG2047|consen  160 VYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG  239 (835)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 002477          241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH  320 (917)
Q Consensus       241 i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~  320 (917)
                      +.+|||+.|.||++||+||++.|.|++|+++|++++.++.|++||++||++|++||++.++.+|+ +... ...      
T Consensus       240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~-~~~------  311 (835)
T KOG2047|consen  240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADE-ESG------  311 (835)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhh-ccc------
Confidence            99999999999999999999999999999999999999999999999999999999999999998 3210 000      


Q ss_pred             CCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCch
Q 002477          321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPT  400 (917)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~  400 (917)
                                                 -.++..+++.+|++||.||+++|.++|+|+||||||||+.|++++.++++++.
T Consensus       312 ---------------------------n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~  364 (835)
T KOG2047|consen  312 ---------------------------NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAA  364 (835)
T ss_pred             ---------------------------ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChH
Confidence                                       00344579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHH
Q 002477          401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA  480 (917)
Q Consensus       401 ~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A  480 (917)
                      +.+.+|++||++++|.+++|+.+.+|+.||++|+.+|+++.||.+|++++++++..+++|+.+||.||+|++++.+++.|
T Consensus       365 ~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A  444 (835)
T KOG2047|consen  365 EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA  444 (835)
T ss_pred             HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 002477          481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE  560 (917)
Q Consensus       481 ~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~  560 (917)
                      ++++++|+.+|....  +.+.++..|+|.++++|+++|.+|++++++.|.+++++.+|+++++++..+|++.+|||.|++
T Consensus       445 l~lm~~A~~vP~~~~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE  522 (835)
T KOG2047|consen  445 LKLMRRATHVPTNPE--LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE  522 (835)
T ss_pred             HHHHHhhhcCCCchh--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999987322  456788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH
Q 002477          561 EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA  640 (917)
Q Consensus       561 ~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~  640 (917)
                      ++.+|++||++|||+|.+|++|+..+||+.|+.+|..|+|+.++|+||++|||||+.||+..++.+|+.||++|++.|..
T Consensus       523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa  602 (835)
T KOG2047|consen  523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA  602 (835)
T ss_pred             hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 002477          641 KRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY  720 (917)
Q Consensus       641 ~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~  720 (917)
                      .+|+++|+||...++....+.||++||.++....|+..+|++|++||+. +|++.+..||++||++|.++|+++|||+||
T Consensus       603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEidRARaIy  681 (835)
T KOG2047|consen  603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEIDRARAIY  681 (835)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhccc-chhhhhhHHHHhhhhhhchhHhhhHhhhcCCc
Q 002477          721 VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QTHFILPEYLMQKDQRLSIDDAKDKLKQAGVH  799 (917)
Q Consensus       721 ~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  799 (917)
                      .++++.|||+.+++||++|..||++|||++|.++||||||+|+++|+ ++.++..+++...       .|.+.+..++.|
T Consensus       682 a~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa~yn~~~~~~a~q~~~~~-------~~~~~~~~~~a~  754 (835)
T KOG2047|consen  682 AHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQATYNTDVNSMAHQMLKIN-------FAASDLAPGAAP  754 (835)
T ss_pred             HhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhh-------hhhhhccccCCC
Confidence            99999999999999999999999999999999999999999999995 8888888886644       255666777788


Q ss_pred             ccHHHHHHHhhcccccCCCCCCCCCcccceecCCcCCCCCCCCCCCCCCccCCCCCCCchhhh----hhhhcccccchhh
Q 002477          800 EDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGGIKTTANHEDIELPDESDSEEEE----KVEIAQKDVPSAV  875 (917)
Q Consensus       800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  875 (917)
                      .|.|.+||++-.+.+  .+.+...++++||+|.++...  ......||||||||+||||||++    ++.++  +||++|
T Consensus       755 md~m~~le~~q~a~e--~~~~p~~~~i~fv~s~~~~~~--~~~s~vnpdEidl~~ded~~e~d~~~~~~~~~--~vpa~v  828 (835)
T KOG2047|consen  755 MDHMPLLEQRQLAAE--ATQQPLKSNIGFVRSDASELT--QEYSQVNPDEIDLDEDEDEDEDDGEDNEVRLE--SVPAAV  828 (835)
T ss_pred             CChHHHHHHHhhhcc--ccccccccceeeEeccccccc--cccCcCCccccccCCCcccccccCCcchhhhh--hccHHH
Confidence            999999999733222  223444589999999775322  22345799999999987776554    34444  999999


Q ss_pred             hcccc
Q 002477          876 YGGLA  880 (917)
Q Consensus       876 ~~~~~  880 (917)
                      |||++
T Consensus       829 fg~lk  833 (835)
T KOG2047|consen  829 FGSLK  833 (835)
T ss_pred             hcccc
Confidence            99998

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query917
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-36
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 5e-29
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-12
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 5e-05
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 5e-34
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 3e-16
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 2e-10
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 4e-05
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 3e-27
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-25
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-13
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-12
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-07
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 2e-23
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 3e-17
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 5e-07
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 5e-12
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 4e-05
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 3e-04
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 8e-04
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 2e-04
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 3e-04
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 8e-04
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
 Score =  145 bits (365), Expect = 1e-36
 Identities = 81/625 (12%), Positives = 189/625 (30%), Gaps = 120/625 (19%)

Query: 48  IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
           + E+ L+  P     W   + E           +   +    T+ER +       R W +
Sbjct: 1   MAEKKLEENPYDLDAWSILIRE---------AQNQPIDKARKTYERLVAQFPSSGRFWKL 51

Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167
           Y+E     K   K  + F R L  +    H  +W+ YL +V +    + +      +   
Sbjct: 52  YIEAEIKAKNYDKVEKLFQRCLMKVL---HIDLWKCYLSYVRETKGKLPSYKEKMAQAYD 108

Query: 168 YDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATE 227
           +    I   I      ++W +                         +L+  + + ++A  
Sbjct: 109 FALDKIGMEIM---SYQIWVDYIN----------------------FLKGVEAVGSYAEN 143

Query: 228 ISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSV 287
                V  + + G       + +LW     Y     +    + I +         RD+  
Sbjct: 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDR-------SRDYMN 196

Query: 288 IFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGF 347
                 ++E +M           ++         +   E  ++D+     ++ K   N  
Sbjct: 197 ARRVAKEYETVM---------KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS--NPL 245

Query: 348 WLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYT 407
                +D  L   R+     +   +          H+ + W+   +  E +         
Sbjct: 246 RT---EDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS--------- 285

Query: 408 EAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467
                            L      +         A  I+++A+    K    L   +  +
Sbjct: 286 ---------------SKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL---YFAY 327

Query: 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES 527
           A+ E     ++    +  R                    + ++      ++  Y+     
Sbjct: 328 ADYEESRMKYEKVHSIYNRL-------------------LAIEDIDPTLVYIQYMKFARR 368

Query: 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEEH-KYFEDAFRVYERGVKIFKYPHVKD 586
              ++S R ++++  +       + +  AL+     K    AF+++E G+K  KY  + +
Sbjct: 369 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPE 426

Query: 587 IWVTYLSKFVKRYGKTKLERARELFENAVE--TAPADAVKPLYLQYAKLEEDYGLAKRAM 644
             + Y+  ++    +      R LFE  +   + P +    ++ ++   E + G     +
Sbjct: 427 YVLAYI-DYLSHLNED--NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483

Query: 645 KVYDQATKAVPNHEKLGMYEIYIAR 669
           KV  +   A     +     + + R
Sbjct: 484 KVEKRRFTAFREEYEGKETALLVDR 508
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 917
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 4e-22
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 6e-12
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 2e-11
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 9e-05
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 9e-06
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 8e-05
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.8 bits (237), Expect = 4e-22
 Identities = 48/270 (17%), Positives = 91/270 (33%), Gaps = 35/270 (12%)

Query: 513 KSLRLWTFYVDLEESLGNLES--------TRAVYERILDLRIATPQIIINYALLLEEH-- 562
           + + +W  Y+  E+S                  YE+ L +    P I    A  LE+   
Sbjct: 6   QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK 65

Query: 563 ------------KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
                        + ++A  +YER +          ++  Y      R    K E+   +
Sbjct: 66  LLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRM---KYEKVHSI 121

Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARA 670
           +   +     D    +Y+QY K        K    ++ +A +          + +Y+  A
Sbjct: 122 YNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAA 175

Query: 671 AEIFGVPKTREIYEQAIESGL-PDKDVKAMCLKYAELEKSLGEIDRARGIYVFA--SQFA 727
              +   K + +  +  E GL    D+    L Y +    L E +  R ++     S   
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235

Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
            P    E W R+  FE N G+  +  ++ +
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEK 265
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query917
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.97
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.96
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.92
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.92
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.86
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.84
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.78
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.74
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.74
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.71
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.69
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.61
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.37
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.36
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.27
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.25
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.23
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.19
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.18
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.15
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.1
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.09
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.02
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.96
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.95
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.91
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.87
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.87
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.86
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.84
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.83
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.83
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.81
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.8
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.77
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.72
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.71
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.71
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.7
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.57
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.57
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.56
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.29
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.12
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 97.99
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.93
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.93
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.74
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 96.08
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 95.58
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 95.15
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 94.75
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 92.0
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-28  Score=194.27  Aligned_cols=210  Identities=17%  Similarity=0.210  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             83899999999999629998999999998825588900069999999999995179989999999987599745777652
Q 002477          421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA  500 (917)
Q Consensus       421 ~~~~lw~~~a~~~~~~g~~~~Ar~i~ekal~~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~  500 (917)
                      .....+..++..+...|+++.|...+++++..+|.++    .+|..++.++...+++++|+..++++....+        
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------  234 (388)
T d1w3ba_         167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL----DAYINLGNVLKEARIFDRAVAAYLRALSLSP--------  234 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT--------
T ss_pred             CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------
T ss_conf             1068998636301024719999999999998494649----9999971552200529999999998577755--------


Q ss_pred             HCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             04981246652231899999999999839988999999999960479899999999999981589999999999862159
Q 002477          501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK  580 (917)
Q Consensus       501 ~~~~~~~~~~~~~s~~lw~~y~~l~~~~g~~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~erai~~f~  580 (917)
                                  .....|..++.++...|+++.|...|+++++..|.++.++.++|..+...|++++|...|++++..  
T Consensus       235 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--  300 (388)
T d1w3ba_         235 ------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--  300 (388)
T ss_dssp             ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--
T ss_pred             ------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--
T ss_conf             ------------479999999999998789999999999999849998999999999999748799999999865404--


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             98909999999999999969998589999999999719937849999999999998177899999999998419997737
Q 002477          581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL  660 (917)
Q Consensus       581 ~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~~~~  660 (917)
                      .|.....+......+.   ..+++++|...|+++++..|.  ...++..+|.++...|++++|+..|+++++..|++...
T Consensus       301 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a  375 (388)
T d1w3ba_         301 CPTHADSLNNLANIKR---EQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA  375 (388)
T ss_dssp             CTTCHHHHHHHHHHHH---TTTCHHHHHHHHHHHTTSCTT--CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCCCHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             8730010157999999---878999999999999986889--89999999999998599999999999999709998999


Q ss_pred             H
Q ss_conf             9
Q 002477          661 G  661 (917)
Q Consensus       661 ~  661 (917)
                      +
T Consensus       376 ~  376 (388)
T d1w3ba_         376 Y  376 (388)
T ss_dssp             H
T ss_pred             H
T ss_conf             9
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure