Citrus Sinensis ID: 002490

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910------
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARSAVFGATLICVHFHQLQ
cccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccEEEcccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEcccEEEEEEccEEEEEEccccccccEEEEEccccccccccccEEEEcccccEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEcccEEEEEccccEEEEccEEEEEEEEEEEcccEEEEEccccEEEEEEcccEEEEEEccccEEEEEEEccEEEEEEccccEEEEEEcHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHcccccEEEcccccccccEEHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEEccccEEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccccccccccccHHccccccEEEEEEEccccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccEEEEEEccEEEEEEcccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEEEccccccccccHHHcccccccEEEEEEcccEEEEEccccEEEEEEccccEEEEEccccccccEEEccccEEEEEcccEEEEEEHHcccEEEEEEccccEEEEEcccccEEEEEEccEEEEEEcccEEEEEEEccEEEEEEEEccccEEEEEcccEEEEEEccccEEEEEEccccEEEEEEcccEEEEEcccccEEEEEEcHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHccccHHHEEEEcccccHEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEHEEcccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHcccccccccccccccccHHccccHHHHHHHccccccccccccHccccccccHHHHcccccccccccHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccc
mltkfetksnrvkglsfhskrpwiLASLHSGVIQLWDYRMGTLIdrfdehdgpvrgvhfhksqplfvsggddykIKVWNYKMHRCLFTLLGHLDyirtvqfhheypwivsasddqtiRIWNWQSRTCISvltghnhyvmcasfhpkedlvvsasldQTVRVWDIGalrkktvspaddiLRLSQMNTDLFGGVDAVVKYVLEGHdrgvnwaafhptlplivsgaddRQVKLWRMNETKAWEVDTlrghmnnvscVMFHAKQDIivsnsedksirvWDVTKRTGVQTFRREHDRFWIlashpemnllaaghdsgMIVFKLererpafavsgdslfyAKDRFLRYyefstqkdtqvipirrpgstslnqsprtlsysptenAVLICSdvdggsyelyvipkdsigrgdsvqdakkglggsaiFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTgnllcraeDRVVIFDLQqrlvlgdlqtpFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHetirvksgawddngVFIYTTLNHIKyclpngdsgiirtldvpiyitkvsgntifcldrdgknraIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAkeidekdhWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAelgdnvpsvpegkapsllmppspvvcsgdwplLRVMKGIFeggldnigrgavdeeeeavegdwgeeldmvdvdglqngdvaailedgevaeegeeeeggwdledlelppeaetpkapvnarsAVFGATLICVHFHQLQ
mltkfetksnrvkglsfhskrpwilaSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHfhksqplfvsggDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVwdigalrkktvspaddiLRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQdiivsnsedksirvwdvtkrtgvqtfrrEHDRFWILASHPEMNLLAAGHDSGMIVFKLERERpafavsgdslFYAKDRFLRYYEfstqkdtqvipirrpgstslnqsprtlsyspteNAVLICSDVDGGSYELYVIpkdsigrgdsVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLknevvkksilpIAADAIFYAGTGNLLCRAEDRVVIFDLQqrlvlgdlqTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHEtirvksgawddNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEgkapsllmppsPVVCSGDWPLLRVMKGIFEGgldnigrgavDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARSAVFGATLICVHFHQLQ
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQvlvknlknevvkkSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGavdeeeeavegdwgeeLDMVDVDGLQNGDVAAIledgevaeegeeeeggwdledlelppeAETPKAPVNARSAVFGATLICVHFHQLQ
**************LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI**********************ENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAE*********************PVVCSGDWPLLRVMKGIFEGGLDNIGRGAVD****AVEGDWGEELDMVDVDGLQNGDVAAI**************************************SAVFGATLICVHFH***
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAA*********************SPVVCSGDWPLLRVMKGI*********************GDWGEELDMVDVDG*******************EEEEGGWDLEDLELPPEAET**********VFGATLI*V******
**************LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEV**********WDLEDLELPPEAETPKAPVNARSAVFGATLICVHFHQLQ
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNI*******************************************************EDLELPPEAETPKA*VNARSAVFGATLICVHFHQL*
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MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARSAVFGATLICVHFHQLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query916 2.2.26 [Sep-21-2011]
Q94A40 1216 Coatomer subunit alpha-1 yes no 0.983 0.740 0.887 0.0
Q9SJT9 1218 Coatomer subunit alpha-2 no no 0.984 0.740 0.885 0.0
Q9AUR8 1218 Coatomer subunit alpha-1 yes no 0.986 0.742 0.841 0.0
Q0J3D9 1218 Coatomer subunit alpha-3 yes no 0.986 0.742 0.837 0.0
Q9AUR7 1218 Coatomer subunit alpha-2 yes no 0.986 0.742 0.832 0.0
Q8CIE6 1224 Coatomer subunit alpha OS yes no 0.958 0.717 0.622 0.0
Q27954 1224 Coatomer subunit alpha OS yes no 0.958 0.717 0.621 0.0
P53621 1224 Coatomer subunit alpha OS yes no 0.970 0.726 0.617 0.0
Q55FR9 1221 Coatomer subunit alpha OS yes no 0.899 0.674 0.562 0.0
Q96WV5 1207 Putative coatomer subunit yes no 0.966 0.733 0.513 0.0
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2 Back     alignment and function desciption
 Score = 1677 bits (4344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/903 (88%), Positives = 858/903 (95%), Gaps = 2/903 (0%)

Query: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
           MLTKFETKSNRVKGLSFH KRPWILASLHSGVIQLWDYRMGTLIDRFDEH+GPVRGVHFH
Sbjct: 1   MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH 60

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
            SQPLFVSGGDDYKIKVWNYK HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
Sbjct: 61  NSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120

Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
           NWQSRTC+SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDI+R
Sbjct: 121 NWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR 180

Query: 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
           L+QMN+DLFGGVDA+VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE
Sbjct: 181 LTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           VDTLRGHMNNVS VMFHAKQDIIVSNSEDKSIRVWD TKRTG+QTFRREHDRFWILA HP
Sbjct: 241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHP 300

Query: 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360
           EMNLLAAGHDSGMIVFKLERERPAFA+SGDSLFYAKDRFLRYYE+STQ+D+QVIPIRRPG
Sbjct: 301 EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG 360

Query: 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420
           + SLNQSPRTLSYSPTENAVLICSD+DGGSYELY+IPKDS+GR D VQDAK+G GGSA+F
Sbjct: 361 TPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF 420

Query: 421 IARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480
           IARNRFAVL+KS++QVLVKNLKNEVVKKS LPI  DAIFYAGTGNLLCR+ED+VVIFDLQ
Sbjct: 421 IARNRFAVLEKSTSQVLVKNLKNEVVKKSPLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ 480

Query: 481 QRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540
           QRLVLG+LQTPFV+YVVWS+DMESVALLSKH IIIASKKLV QCTLHETIRVKSGAWDDN
Sbjct: 481 QRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDN 540

Query: 541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYI 600
           GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKN+AI I+ATEYI
Sbjct: 541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITINATEYI 600

Query: 601 FKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 660
           FKLSLLRKRYDHVMSMI+NSQLCGQAMIAYLQQKGFPEVALHFV+DER RFNLALESGNI
Sbjct: 601 FKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRFNLALESGNI 660

Query: 661 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK 720
            +AVASA +I+EKDHWYRLGVEALRQGN+GIVE+AYQ+TKNFERLSFLYLITGN+DKLSK
Sbjct: 661 SVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSK 720

Query: 721 MLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 780
           ++KIAEVKN+VMGQFHNALYLGDVKERVKILE+AGHLPLAYITASVHGL D+AERLA EL
Sbjct: 721 LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAERLATEL 780

Query: 781 GDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGD 840
           GDNVPS+PEGK PSLLMPP+P++C GDWPLLRVMKGIFEGGL++  RG   +EE+ VEGD
Sbjct: 781 GDNVPSLPEGKTPSLLMPPTPIMCGGDWPLLRVMKGIFEGGLESADRGGTVDEED-VEGD 839

Query: 841 WGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARS 900
           WGEELD ++VDG++N D+  IL   E  EE  +EEGGW LEDL LPPE +TPKA  NARS
Sbjct: 840 WGEELD-INVDGMENRDIEDILAAAEAGEEENDEEGGWGLEDLVLPPELDTPKASANARS 898

Query: 901 AVF 903
           +VF
Sbjct: 899 SVF 901
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1 Back     alignment and function description
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1 Back     alignment and function description
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1 Back     alignment and function description
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1 Back     alignment and function description
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2 Back     alignment and function description
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1 Back     alignment and function description
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2 Back     alignment and function description
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1 Back     alignment and function description
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query916
255543813 1217 coatomer alpha subunit, putative [Ricinu 0.985 0.741 0.931 0.0
449461607 1217 PREDICTED: coatomer subunit alpha-1-like 0.987 0.743 0.910 0.0
224133400 1218 predicted protein [Populus trichocarpa] 0.986 0.742 0.923 0.0
224119200 1220 predicted protein [Populus trichocarpa] 0.987 0.741 0.929 0.0
255577244 1217 coatomer alpha subunit, putative [Ricinu 0.996 0.750 0.883 0.0
356535517 1218 PREDICTED: coatomer subunit alpha-1-like 0.983 0.739 0.884 0.0
356545092 1221 PREDICTED: coatomer subunit alpha-2-like 0.972 0.729 0.895 0.0
225458111 1217 PREDICTED: coatomer subunit alpha-1 [Vit 0.985 0.741 0.881 0.0
297840319 1217 hypothetical protein ARALYDRAFT_475134 [ 0.983 0.740 0.886 0.0
356538727 1221 PREDICTED: coatomer subunit alpha-1-like 0.972 0.729 0.895 0.0
>gi|255543813|ref|XP_002512969.1| coatomer alpha subunit, putative [Ricinus communis] gi|223547980|gb|EEF49472.1| coatomer alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1776 bits (4600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 843/905 (93%), Positives = 883/905 (97%), Gaps = 2/905 (0%)

Query: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
           MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
Sbjct: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
           KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
Sbjct: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120

Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
           NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
Sbjct: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180

Query: 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
           LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP LPLIVSGADDRQVKLWRMN+TKAWE
Sbjct: 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPNLPLIVSGADDRQVKLWRMNDTKAWE 240

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP
Sbjct: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300

Query: 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360
           EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR+YEFSTQ+DTQVIPIRRPG
Sbjct: 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRFYEFSTQRDTQVIPIRRPG 360

Query: 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420
           +TSLNQSPRTLSYSPTENAVLICSDVDGG+YELYVIPKDSI RGD+VQ+AK+G GGSAIF
Sbjct: 361 TTSLNQSPRTLSYSPTENAVLICSDVDGGTYELYVIPKDSISRGDTVQEAKRGAGGSAIF 420

Query: 421 IARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480
           +ARNRFAVLDKSSNQVLVKNLKNEVVKKS LPIAADAIFYAGTGNLLCRAEDRVVIFDLQ
Sbjct: 421 VARNRFAVLDKSSNQVLVKNLKNEVVKKSSLPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480

Query: 481 QRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540
           QR+VLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN
Sbjct: 481 QRIVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540

Query: 541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYI 600
           GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIY+TKVSGNTIFCLDRDGK+R I IDATEY+
Sbjct: 541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYVTKVSGNTIFCLDRDGKSRHIDIDATEYM 600

Query: 601 FKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 660
           FKLSLLRK+YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
Sbjct: 601 FKLSLLRKKYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 660

Query: 661 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK 720
           QIAVASAKEIDEKDHWYRLGVEALRQGN+GIVEYAYQRTKNFERLSFLYLITGN++KLSK
Sbjct: 661 QIAVASAKEIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNLEKLSK 720

Query: 721 MLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 780
           MLKIAEVKNDVMGQFHNALYLGD++ERVKILE++GHLPLAYITA VHGL+DVAERLAAEL
Sbjct: 721 MLKIAEVKNDVMGQFHNALYLGDIQERVKILENSGHLPLAYITAKVHGLEDVAERLAAEL 780

Query: 781 GDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGD 840
           GDNVPS+PEGK PSLL+PP+P++   DWPLLRVM+GIF+GGLD+ G+GAVDE+EEA EGD
Sbjct: 781 GDNVPSLPEGKVPSLLIPPAPIMSGSDWPLLRVMRGIFQGGLDDTGKGAVDEDEEAAEGD 840

Query: 841 WGEELDMVDVDGLQNGDVAAILEDGEVAEEGEEEEGGWDLEDLELPPEAETPKAPVNARS 900
           WG +LD+ DVDGLQNGDV+ ILEDGEVA+E    EGGWDLEDLELPPEA+TP+A V+ARS
Sbjct: 841 WGGDLDIDDVDGLQNGDVSGILEDGEVADEN--GEGGWDLEDLELPPEADTPRASVSARS 898

Query: 901 AVFGA 905
           +VF A
Sbjct: 899 SVFVA 903

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449461607|ref|XP_004148533.1| PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus] gi|449483541|ref|XP_004156620.1| PREDICTED: coatomer subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133400|ref|XP_002321558.1| predicted protein [Populus trichocarpa] gi|222868554|gb|EEF05685.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119200|ref|XP_002318013.1| predicted protein [Populus trichocarpa] gi|222858686|gb|EEE96233.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577244|ref|XP_002529504.1| coatomer alpha subunit, putative [Ricinus communis] gi|223531020|gb|EEF32873.1| coatomer alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356535517|ref|XP_003536291.1| PREDICTED: coatomer subunit alpha-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356545092|ref|XP_003540979.1| PREDICTED: coatomer subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|225458111|ref|XP_002279779.1| PREDICTED: coatomer subunit alpha-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297840319|ref|XP_002888041.1| hypothetical protein ARALYDRAFT_475134 [Arabidopsis lyrata subsp. lyrata] gi|297333882|gb|EFH64300.1| hypothetical protein ARALYDRAFT_475134 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356538727|ref|XP_003537852.1| PREDICTED: coatomer subunit alpha-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query916
TAIR|locus:2036823 1216 AT1G62020 [Arabidopsis thalian 0.983 0.740 0.842 0.0
TAIR|locus:2050064 1218 AT2G21390 [Arabidopsis thalian 0.984 0.740 0.838 0.0
UNIPROTKB|G3V6T1 1224 Copa "Protein Copa" [Rattus no 0.894 0.669 0.632 1.6e-294
UNIPROTKB|P53621 1224 COPA "Coatomer subunit alpha" 0.894 0.669 0.632 3.2e-294
UNIPROTKB|F1RJX8 1224 COPA "Uncharacterized protein" 0.894 0.669 0.630 3.2e-294
MGI|MGI:1334462 1224 Copa "coatomer protein complex 0.894 0.669 0.630 4.1e-294
UNIPROTKB|Q27954 1224 COPA "Coatomer subunit alpha" 0.894 0.669 0.630 5.3e-294
ZFIN|ZDB-GENE-020905-2 1226 copa "coatomer protein complex 0.895 0.668 0.624 1.2e-285
UNIPROTKB|F1PU93 1214 COPA "Coatomer subunit alpha" 0.882 0.665 0.619 5.3e-285
FB|FBgn0025725 1234 alphaCop "alpha-coatomer prote 0.886 0.658 0.619 4.5e-281
TAIR|locus:2036823 AT1G62020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4021 (1420.5 bits), Expect = 0., P = 0.
 Identities = 761/903 (84%), Positives = 815/903 (90%)

Query:     1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
             MLTKFETKSNRVKGLSFH KRPWILASLHSGVIQLWDYRMGTLIDRFDEH+GPVRGVHFH
Sbjct:     1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH 60

Query:    61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
              SQPLFVSGGDDYKIKVWNYK HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
Sbjct:    61 NSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120

Query:   121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
             NWQSRTC+SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDI+R
Sbjct:   121 NWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR 180

Query:   181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
             L+QMN+DLFGGVDA+VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE
Sbjct:   181 LTQMNSDLFGGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240

Query:   241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
             VDTLRGHMNNVS VMFHAKQDIIVSNSEDKSIRVWD TKRTG+QTFRREHDRFWILA HP
Sbjct:   241 VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAVHP 300

Query:   301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360
             EMNLLAAGHDSGMIVFKLERERPAFA+SGDSLFYAKDRFLRYYE+STQ+D+QVIPIRRPG
Sbjct:   301 EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG 360

Query:   361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420
             + SLNQSPRTLSYSPTENAVLICSD+DGGSYELY+IPKDS+GR D VQDAK+G GGSA+F
Sbjct:   361 TPSLNQSPRTLSYSPTENAVLICSDLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVF 420

Query:   421 IARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQ 480
             IARNRFAVL+KS++Q             S LPI  DAIFYAGTGNLLCR+ED+VVIFDLQ
Sbjct:   421 IARNRFAVLEKSTSQVLVKNLKNEVVKKSPLPIPTDAIFYAGTGNLLCRSEDKVVIFDLQ 480

Query:   481 QRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN 540
             QRLVLG+LQTPFV+YVVWS+DMESVALLSKH IIIASKKLV QCTLHETIRVKSGAWDDN
Sbjct:   481 QRLVLGELQTPFVRYVVWSSDMESVALLSKHTIIIASKKLVLQCTLHETIRVKSGAWDDN 540

Query:   541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYI 600
             GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKN+AI I+ATEYI
Sbjct:   541 GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNKAITINATEYI 600

Query:   601 FKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 660
             FKLSLLRKRYDHVMSMI+NSQLCGQAMIAYLQQKGFPEVALHFV+DER RFNLALESGNI
Sbjct:   601 FKLSLLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRFNLALESGNI 660

Query:   661 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK 720
              +AVASA +I+EKDHWYRLGVEALRQGN+GIVE+AYQ+TKNFERLSFLYLITGN+DKLSK
Sbjct:   661 SVAVASATQINEKDHWYRLGVEALRQGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSK 720

Query:   721 MLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 780
             ++KIAEVKN+VMGQFHNALYLGDVKERVKILE+AGHLPLAYITASVHGL D+AERLA EL
Sbjct:   721 LMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAERLATEL 780

Query:   781 GDNVPSVPEGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGXXXXXXXXXXXX 840
             GDNVPS+PEGK PSLLMPP+P++C GDWPLLRVMKGIFEGGL++  RG            
Sbjct:   781 GDNVPSLPEGKTPSLLMPPTPIMCGGDWPLLRVMKGIFEGGLESADRGGTVDEEDVEGDW 840

Query:   841 XXXXLDMVDVDGLQNGDVAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXAETPKAPVNARS 900
                 LD ++VDG++N D+  I                            +TPKA  NARS
Sbjct:   841 GEE-LD-INVDGMENRDIEDILAAAEAGEEENDEEGGWGLEDLVLPPELDTPKASANARS 898

Query:   901 AVF 903
             +VF
Sbjct:   899 SVF 901
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005215 "transporter activity" evidence=ISS
GO:0005622 "intracellular" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030126 "COPI vesicle coat" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2050064 AT2G21390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6T1 Copa "Protein Copa" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P53621 COPA "Coatomer subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJX8 COPA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1334462 Copa "coatomer protein complex subunit alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q27954 COPA "Coatomer subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020905-2 copa "coatomer protein complex, subunit alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU93 COPA "Coatomer subunit alpha" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0025725 alphaCop "alpha-coatomer protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q55FR9COPA_DICDINo assigned EC number0.56210.89950.6748yesno
Q96WV5COPA_SCHPONo assigned EC number0.51350.96610.7332yesno
Q8CIE6COPA_MOUSENo assigned EC number0.62260.95850.7173yesno
P53621COPA_HUMANNo assigned EC number0.61780.97050.7263yesno
Q94A40COPA1_ARATHNo assigned EC number0.88700.98360.7409yesno
Q27954COPA_BOVINNo assigned EC number0.62150.95850.7173yesno
Q0J3D9COPA3_ORYSJNo assigned EC number0.83790.98680.7422yesno
Q9AUR8COPA1_ORYSJNo assigned EC number0.84120.98680.7422yesno
Q9AUR7COPA2_ORYSJNo assigned EC number0.83240.98680.7422yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query916
pfam04053429 pfam04053, Coatomer_WDAD, Coatomer WD associated r 1e-172
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 1e-72
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 1e-43
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 8e-40
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 7e-32
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 1e-31
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 3e-20
pfam06957 421 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C 2e-18
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 3e-13
smart0032040 smart00320, WD40, WD40 repeats 4e-09
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 6e-09
smart0032040 smart00320, WD40, WD40 repeats 2e-07
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 2e-07
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 1e-06
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 2e-06
smart0032040 smart00320, WD40, WD40 repeats 3e-06
smart0032040 smart00320, WD40, WD40 repeats 3e-06
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 5e-06
smart0032040 smart00320, WD40, WD40 repeats 9e-06
PLN00181793 PLN00181, PLN00181, protein SPA1-RELATED; Provisio 4e-05
>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region Back     alignment and domain information 
 Score =  506 bits (1306), Expect = e-172
 Identities = 189/448 (42%), Positives = 263/448 (58%), Gaps = 35/448 (7%)

Query: 338 RFLRYYEFSTQ--KDTQVI--PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393
             +R Y       KD +++   ++  GST     P++LS++P    VL+C     G Y +
Sbjct: 1   SEVRSYNIKGNNLKDGELLPLSLKELGST--EVYPQSLSHNPNGRFVLVC---GDGEYII 55

Query: 394 YVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI 453
           Y           + ++   G G   ++++RNR+AVL+KS    + KN K  V K   LP 
Sbjct: 56  YTAL--------AWRNKAFGSGLDFVWVSRNRYAVLEKSGTVKIFKNFKESVTKSIKLPY 107

Query: 454 AADAIFYAGTGNLLC-RAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHA 512
           + D IF    G LL  ++E  V  +D +Q  ++  +     KYV+WS+D E VALL+K  
Sbjct: 108 SVDKIFG---GALLGVKSESFVSFYDWEQGKLIRRIDVS-PKYVIWSDDGELVALLTKDT 163

Query: 513 IIIASKKLV--------HQCTLHE-TIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGII 563
           + I +  L             LHE T RVKSGAWD + VFIYTTLNH+KY L NG++GII
Sbjct: 164 VYILNYNLEAVAEGVEDAFEVLHEVTERVKSGAWDGD-VFIYTTLNHLKY-LVNGETGII 221

Query: 564 RTLDVPIYITKVSG--NTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQ 621
           + LD P+Y+       N ++ LDRDG   +  ID TE  FK +LLRK Y+ V+ +I NS 
Sbjct: 222 KHLDKPMYLLGYLPKDNRVYLLDRDGNVVSYEIDPTELEFKTALLRKDYEEVLRIIANSN 281

Query: 622 LCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGV 681
           L GQ +I +L++KG+PE+AL FV D  TRF+LALE GN+ +A+  AKE+D++  W RLG 
Sbjct: 282 LLGQKIIRFLEKKGYPELALQFVTDPDTRFDLALELGNLDVALEIAKELDDEHKWKRLGD 341

Query: 682 EALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYL 741
            AL QGN  + E AYQ+ K+F++L  LYL TGN +KL K+ KIAE + D    F NALYL
Sbjct: 342 AALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNKEKLKKLAKIAEERGDYNSAFQNALYL 401

Query: 742 GDVKERVKILESAGHLPLAYITASVHGL 769
           GDV++ V IL   G LP AY+ A  +G 
Sbjct: 402 GDVEKCVDILIKTGRLPEAYLFAKTYGP 429

This region is composed of WD40 repeats. Length = 429
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus Back     alignment and domain information
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 916
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 100.0
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 100.0
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0319775 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0318603 consensus WD40 repeat stress protein/actin interac 100.0
KOG0291893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0318603 consensus WD40 repeat stress protein/actin interac 100.0
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 100.0
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 100.0
KOG0306888 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0319775 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0291893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 100.0
KOG0286343 consensus G-protein beta subunit [General function 100.0
KOG0306888 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0279315 consensus G protein beta subunit-like protein [Sig 100.0
KOG0295406 consensus WD40 repeat-containing protein [Function 100.0
KOG0279315 consensus G protein beta subunit-like protein [Sig 100.0
KOG0286343 consensus G-protein beta subunit [General function 100.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 100.0
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 100.0
KOG0263707 consensus Transcription initiation factor TFIID, s 100.0
KOG0315311 consensus G-protein beta subunit-like protein (con 100.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 100.0
KOG0645312 consensus WD40 repeat protein [General function pr 100.0
KOG2041 1189 consensus WD40 repeat protein [General function pr 100.0
KOG0296399 consensus Angio-associated migratory cell protein 100.0
KOG0284464 consensus Polyadenylation factor I complex, subuni 100.0
KOG14081080 consensus WD40 repeat protein [Function unknown] 100.0
KOG0645312 consensus WD40 repeat protein [General function pr 100.0
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 100.0
KOG0265338 consensus U5 snRNP-specific protein-like factor an 100.0
KOG0315311 consensus G-protein beta subunit-like protein (con 100.0
KOG0316307 consensus Conserved WD40 repeat-containing protein 100.0
KOG1539910 consensus WD repeat protein [General function pred 100.0
KOG0266456 consensus WD40 repeat-containing protein [General 100.0
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 100.0
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 100.0
KOG0263707 consensus Transcription initiation factor TFIID, s 100.0
KOG2048691 consensus WD40 repeat protein [General function pr 100.0
KOG0282503 consensus mRNA splicing factor [Function unknown] 100.0
KOG0284464 consensus Polyadenylation factor I complex, subuni 100.0
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 100.0
KOG0296399 consensus Angio-associated migratory cell protein 100.0
KOG0295406 consensus WD40 repeat-containing protein [Function 100.0
KOG1539910 consensus WD repeat protein [General function pred 100.0
KOG2106626 consensus Uncharacterized conserved protein, conta 100.0
KOG0275508 consensus Conserved WD40 repeat-containing protein 100.0
KOG0265338 consensus U5 snRNP-specific protein-like factor an 100.0
KOG0281499 consensus Beta-TrCP (transducin repeats containing 100.0
KOG14081080 consensus WD40 repeat protein [Function unknown] 100.0
KOG1063764 consensus RNA polymerase II elongator complex, sub 100.0
PLN00181793 protein SPA1-RELATED; Provisional 100.0
KOG0266456 consensus WD40 repeat-containing protein [General 100.0
KOG0293519 consensus WD40 repeat-containing protein [Function 100.0
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 100.0
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.98
KOG2106626 consensus Uncharacterized conserved protein, conta 99.98
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.98
KOG2048691 consensus WD40 repeat protein [General function pr 99.98
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.97
KOG0643327 consensus Translation initiation factor 3, subunit 99.97
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.97
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.97
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.97
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.97
KOG0293519 consensus WD40 repeat-containing protein [Function 99.97
PLN00181793 protein SPA1-RELATED; Provisional 99.97
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.97
KOG2041 1189 consensus WD40 repeat protein [General function pr 99.97
KOG0643327 consensus Translation initiation factor 3, subunit 99.97
KOG1274933 consensus WD40 repeat protein [General function pr 99.97
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.97
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.97
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.96
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.96
KOG0283712 consensus WD40 repeat-containing protein [Function 99.96
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.96
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.96
PTZ00421493 coronin; Provisional 99.96
KOG0772641 consensus Uncharacterized conserved protein, conta 99.96
KOG0300481 consensus WD40 repeat-containing protein [Function 99.96
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.96
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 99.96
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.96
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.96
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.96
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.96
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.96
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.96
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.96
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.96
KOG0300481 consensus WD40 repeat-containing protein [Function 99.96
KOG0289506 consensus mRNA splicing factor [General function p 99.95
KOG0294362 consensus WD40 repeat-containing protein [Function 99.95
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.95
PTZ00421493 coronin; Provisional 99.95
KOG0283712 consensus WD40 repeat-containing protein [Function 99.95
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.95
KOG0641350 consensus WD40 repeat protein [General function pr 99.95
PTZ00420568 coronin; Provisional 99.95
KOG0289506 consensus mRNA splicing factor [General function p 99.95
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.95
KOG0301745 consensus Phospholipase A2-activating protein (con 99.95
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.95
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.95
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.95
PTZ00420568 coronin; Provisional 99.95
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.95
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.95
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.95
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.94
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.94
KOG0772641 consensus Uncharacterized conserved protein, conta 99.94
KOG0294362 consensus WD40 repeat-containing protein [Function 99.94
KOG2096420 consensus WD40 repeat protein [General function pr 99.94
KOG0641350 consensus WD40 repeat protein [General function pr 99.93
KOG2096420 consensus WD40 repeat protein [General function pr 99.93
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.93
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.93
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.93
KOG2055514 consensus WD40 repeat protein [General function pr 99.93
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.93
KOG0639705 consensus Transducin-like enhancer of split protei 99.93
KOG0301745 consensus Phospholipase A2-activating protein (con 99.93
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.92
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.92
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.92
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.92
KOG4283397 consensus Transcription-coupled repair protein CSA 99.92
KOG1963792 consensus WD40 repeat protein [General function pr 99.92
KOG2055514 consensus WD40 repeat protein [General function pr 99.92
KOG0646476 consensus WD40 repeat protein [General function pr 99.91
KOG0267825 consensus Microtubule severing protein katanin p80 99.91
KOG0267825 consensus Microtubule severing protein katanin p80 99.91
KOG0646476 consensus WD40 repeat protein [General function pr 99.91
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.9
KOG0269839 consensus WD40 repeat-containing protein [Function 99.9
KOG4328498 consensus WD40 protein [Function unknown] 99.9
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.9
KOG1273405 consensus WD40 repeat protein [General function pr 99.9
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.9
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.9
KOG1963792 consensus WD40 repeat protein [General function pr 99.89
COG2319466 FOG: WD40 repeat [General function prediction only 99.89
KOG1273405 consensus WD40 repeat protein [General function pr 99.89
KOG0269839 consensus WD40 repeat-containing protein [Function 99.89
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.89
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.89
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.89
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.88
KOG1274933 consensus WD40 repeat protein [General function pr 99.88
KOG0302440 consensus Ribosome Assembly protein [General funct 99.88
KOG0639705 consensus Transducin-like enhancer of split protei 99.88
KOG4328498 consensus WD40 protein [Function unknown] 99.88
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.87
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.87
KOG0270463 consensus WD40 repeat-containing protein [Function 99.86
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.85
KOG0302440 consensus Ribosome Assembly protein [General funct 99.85
COG2319466 FOG: WD40 repeat [General function prediction only 99.85
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.85
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.84
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.84
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.84
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.83
KOG4283397 consensus Transcription-coupled repair protein CSA 99.83
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.83
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 99.83
KOG0270463 consensus WD40 repeat-containing protein [Function 99.82
KOG06441113 consensus Uncharacterized conserved protein, conta 99.82
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.81
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.81
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.8
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.8
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 99.8
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 99.79
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.79
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.78
KOG0303472 consensus Actin-binding protein Coronin, contains 99.78
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.78
KOG19121062 consensus WD40 repeat protein [General function pr 99.77
KOG4227609 consensus WD40 repeat protein [General function pr 99.77
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.76
KOG0649325 consensus WD40 repeat protein [General function pr 99.76
KOG0303472 consensus Actin-binding protein Coronin, contains 99.76
KOG06441113 consensus Uncharacterized conserved protein, conta 99.76
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.76
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.76
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.75
KOG1188376 consensus WD40 repeat protein [General function pr 99.75
KOG1188376 consensus WD40 repeat protein [General function pr 99.74
KOG0649325 consensus WD40 repeat protein [General function pr 99.74
KOG4227609 consensus WD40 repeat protein [General function pr 99.74
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.73
PRK11028330 6-phosphogluconolactonase; Provisional 99.73
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.72
KOG2110391 consensus Uncharacterized conserved protein, conta 99.72
KOG1334559 consensus WD40 repeat protein [General function pr 99.72
PRK11028330 6-phosphogluconolactonase; Provisional 99.71
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.7
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.69
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.69
PRK01742429 tolB translocation protein TolB; Provisional 99.69
KOG0771398 consensus Prolactin regulatory element-binding pro 99.68
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.68
KOG1272545 consensus WD40-repeat-containing subunit of the 18 99.67
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.67
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.66
KOG1310758 consensus WD40 repeat protein [General function pr 99.65
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 99.65
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 99.64
KOG2139445 consensus WD40 repeat protein [General function pr 99.64
PRK01742429 tolB translocation protein TolB; Provisional 99.64
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.64
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.64
KOG19121062 consensus WD40 repeat protein [General function pr 99.63
KOG2110391 consensus Uncharacterized conserved protein, conta 99.63
KOG0771398 consensus Prolactin regulatory element-binding pro 99.62
KOG1310758 consensus WD40 repeat protein [General function pr 99.62
COG4946668 Uncharacterized protein related to the periplasmic 99.62
KOG2315566 consensus Predicted translation initiation factor 99.6
KOG2111346 consensus Uncharacterized conserved protein, conta 99.6
KOG2111346 consensus Uncharacterized conserved protein, conta 99.6
PRK03629429 tolB translocation protein TolB; Provisional 99.6
KOG2139445 consensus WD40 repeat protein [General function pr 99.59
KOG1272545 consensus WD40-repeat-containing subunit of the 18 99.58
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 99.57
PRK04922433 tolB translocation protein TolB; Provisional 99.57
KOG3616 1636 consensus Selective LIM binding factor [Transcript 99.56
PRK05137435 tolB translocation protein TolB; Provisional 99.56
KOG2314698 consensus Translation initiation factor 3, subunit 99.56
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 99.55
PRK02889427 tolB translocation protein TolB; Provisional 99.55
PRK03629429 tolB translocation protein TolB; Provisional 99.55
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 99.54
KOG2314698 consensus Translation initiation factor 3, subunit 99.53
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.52
KOG0974967 consensus WD-repeat protein WDR6, WD repeat superf 99.52
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 99.52
KOG2321703 consensus WD40 repeat protein [General function pr 99.51
PRK04922433 tolB translocation protein TolB; Provisional 99.51
KOG2315566 consensus Predicted translation initiation factor 99.51
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.51
PRK05137435 tolB translocation protein TolB; Provisional 99.5
PRK02889427 tolB translocation protein TolB; Provisional 99.5
KOG0974967 consensus WD-repeat protein WDR6, WD repeat superf 99.49
KOG3881412 consensus Uncharacterized conserved protein [Funct 99.48
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.47
KOG1334559 consensus WD40 repeat protein [General function pr 99.47
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 99.47
COG4946668 Uncharacterized protein related to the periplasmic 99.46
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.46
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 99.45
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 99.44
KOG2321703 consensus WD40 repeat protein [General function pr 99.44
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.41
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 99.4
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 99.39
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 99.39
KOG1409404 consensus Uncharacterized conserved protein, conta 99.38
PRK00178430 tolB translocation protein TolB; Provisional 99.37
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 99.37
PRK04792448 tolB translocation protein TolB; Provisional 99.36
PRK00178430 tolB translocation protein TolB; Provisional 99.35
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 99.34
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 99.33
PRK01029428 tolB translocation protein TolB; Provisional 99.31
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 99.31
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 99.3
PRK04792448 tolB translocation protein TolB; Provisional 99.3
PRK01029428 tolB translocation protein TolB; Provisional 99.29
KOG1409404 consensus Uncharacterized conserved protein, conta 99.23
KOG4547541 consensus WD40 repeat-containing protein [General 99.21
KOG4547541 consensus WD40 repeat-containing protein [General 99.21
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 99.19
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 99.17
KOG0280339 consensus Uncharacterized conserved protein [Amino 99.15
PLN029191057 haloacid dehalogenase-like hydrolase family protei 99.14
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 99.1
KOG0280339 consensus Uncharacterized conserved protein [Amino 99.07
KOG4532344 consensus WD40-like repeat containing protein [Gen 99.05
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.04
PLN029191057 haloacid dehalogenase-like hydrolase family protei 99.01
KOG41901034 consensus Uncharacterized conserved protein [Funct 99.01
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.99
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.97
KOG41901034 consensus Uncharacterized conserved protein [Funct 98.97
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.97
PRK04043419 tolB translocation protein TolB; Provisional 98.96
PRK04043419 tolB translocation protein TolB; Provisional 98.96
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 98.93
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.92
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 98.92
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.91
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 98.89
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 98.87
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 98.86
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 98.83
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.8
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 98.77
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 98.76
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 98.76
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 98.74
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 98.71
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.7
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.69
PF06957 422 COPI_C: Coatomer (COPI) alpha subunit C-terminus; 98.67
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 98.66
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 98.64
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 98.64
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.62
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.61
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.55
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 98.55
KOG4714319 consensus Nucleoporin [Nuclear structure] 98.52
PRK02888635 nitrous-oxide reductase; Validated 98.52
KOG4714319 consensus Nucleoporin [Nuclear structure] 98.52
KOG2695425 consensus WD40 repeat protein [General function pr 98.5
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.5
KOG18971096 consensus Damage-specific DNA binding complex, sub 98.47
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 98.47
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 98.45
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 98.43
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 98.43
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.43
KOG2695425 consensus WD40 repeat protein [General function pr 98.43
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 98.4
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.39
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 98.38
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.37
PRK02888635 nitrous-oxide reductase; Validated 98.36
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 98.35
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.33
KOG3621726 consensus WD40 repeat-containing protein [General 98.32
COG52901243 IkappaB kinase complex, IKAP component [Transcript 98.25
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 98.21
KOG3621726 consensus WD40 repeat-containing protein [General 98.2
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 98.19
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 98.17
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 98.15
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 98.13
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 98.11
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 98.09
COG0823425 TolB Periplasmic component of the Tol biopolymer t 98.05
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 98.0
COG3391381 Uncharacterized conserved protein [Function unknow 97.97
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 97.95
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 97.9
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 97.87
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 97.86
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.86
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 97.84
KOG18971096 consensus Damage-specific DNA binding complex, sub 97.82
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 97.81
COG0823425 TolB Periplasmic component of the Tol biopolymer t 97.79
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 97.74
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 97.72
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 97.66
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 97.65
KOG1008783 consensus Uncharacterized conserved protein, conta 97.59
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 97.53
PF15390671 DUF4613: Domain of unknown function (DUF4613) 97.52
KOG1008783 consensus Uncharacterized conserved protein, conta 97.5
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 97.48
PRK13616591 lipoprotein LpqB; Provisional 97.46
COG3391381 Uncharacterized conserved protein [Function unknow 97.45
COG3386307 Gluconolactonase [Carbohydrate transport and metab 97.41
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 97.38
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 97.35
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 97.31
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 97.3
COG3386307 Gluconolactonase [Carbohydrate transport and metab 97.26
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 97.22
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 97.17
smart0032040 WD40 WD40 repeats. Note that these repeats are per 97.14
COG3490366 Uncharacterized protein conserved in bacteria [Fun 97.13
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 97.13
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.13
COG3490366 Uncharacterized protein conserved in bacteria [Fun 97.1
PRK10115686 protease 2; Provisional 97.1
PRK13616591 lipoprotein LpqB; Provisional 97.09
PF05694461 SBP56: 56kDa selenium binding protein (SBP56); Int 97.06
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 96.99
COG5276370 Uncharacterized conserved protein [Function unknow 96.95
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 96.94
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 96.9
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 96.86
COG3204316 Uncharacterized protein conserved in bacteria [Fun 96.8
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.79
COG3204316 Uncharacterized protein conserved in bacteria [Fun 96.7
PF15390671 DUF4613: Domain of unknown function (DUF4613) 96.69
PHA02713557 hypothetical protein; Provisional 96.65
TIGR03118336 PEPCTERM_chp_1 conserved hypothetical protein TIGR 96.64
PLN03218 1060 maturation of RBCL 1; Provisional 96.63
PF07995331 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: 96.62
TIGR03118336 PEPCTERM_chp_1 conserved hypothetical protein TIGR 96.61
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 96.58
KOG2395644 consensus Protein involved in vacuole import and d 96.54
PRK11788389 tetratricopeptide repeat protein; Provisional 96.52
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 96.46
PRK10115686 protease 2; Provisional 96.45
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 96.42
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 96.42
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 96.3
PLN03218 1060 maturation of RBCL 1; Provisional 96.26
PRK13684334 Ycf48-like protein; Provisional 96.25
PF05694461 SBP56: 56kDa selenium binding protein (SBP56); Int 96.24
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 96.11
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 96.06
PRK11788389 tetratricopeptide repeat protein; Provisional 96.04
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 96.02
KOG2395644 consensus Protein involved in vacuole import and d 96.0
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 96.0
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 95.96
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 95.94
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 95.91
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 95.89
KOG2444238 consensus WD40 repeat protein [General function pr 95.81
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 95.78
KOG2444238 consensus WD40 repeat protein [General function pr 95.72
KOG4499310 consensus Ca2+-binding protein Regucalcin/SMP30 [I 95.67
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 95.64
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 95.63
KOG18981205 consensus Splicing factor 3b, subunit 3 [RNA proce 95.62
smart00036302 CNH Domain found in NIK1-like kinases, mouse citro 95.6
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 95.56
PF07995331 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: 95.5
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 95.5
PHA02713557 hypothetical protein; Provisional 95.37
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 95.34
PLN03077857 Protein ECB2; Provisional 95.31
PRK13684334 Ycf48-like protein; Provisional 95.08
PHA03098534 kelch-like protein; Provisional 95.04
PRK12370553 invasion protein regulator; Provisional 94.96
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 94.93
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 94.92
KOG18981205 consensus Splicing factor 3b, subunit 3 [RNA proce 94.9
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 94.87
PLN03077 857 Protein ECB2; Provisional 94.81
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 94.8
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.64
PRK10747398 putative protoheme IX biogenesis protein; Provisio 94.48
KOG2247615 consensus WD40 repeat-containing protein [General 94.45
KOG2377657 consensus Uncharacterized conserved protein [Funct 94.38
PHA03098534 kelch-like protein; Provisional 94.36
KOG2063 877 consensus Vacuolar assembly/sorting proteins VPS39 94.36
KOG3060289 consensus Uncharacterized conserved protein [Funct 94.26
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.21
PF14727418 PHTB1_N: PTHB1 N-terminus 94.2
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 94.18
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 94.11
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 94.08
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 94.06
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 94.04
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 93.85
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 93.84
PF14781136 BBS2_N: Ciliary BBSome complex subunit 2, N-termin 93.77
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 93.75
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 93.67
KOG1916 1283 consensus Nuclear protein, contains WD40 repeats [ 93.54
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 93.38
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 93.31
PF10395670 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an 93.26
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 93.23
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 93.06
PHA02790480 Kelch-like protein; Provisional 92.88
PRK12370553 invasion protein regulator; Provisional 92.86
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 92.82
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 92.73
COG3292671 Predicted periplasmic ligand-binding sensor domain 92.57
PRK10370198 formate-dependent nitrite reductase complex subuni 92.55
COG5290 1243 IkappaB kinase complex, IKAP component [Transcript 92.51
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 92.51
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 92.35
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 92.26
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 92.22
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 92.05
COG5167776 VID27 Protein involved in vacuole import and degra 91.96
KOG2003840 consensus TPR repeat-containing protein [General f 91.96
PF10395670 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an 91.83
PHA02790480 Kelch-like protein; Provisional 91.74
KOG2076 895 consensus RNA polymerase III transcription factor 91.71
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 91.71
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 91.62
PF08728717 CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans 91.58
PF14727418 PHTB1_N: PTHB1 N-terminus 91.54
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 91.28
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 91.19
KOG2003840 consensus TPR repeat-containing protein [General f 91.08
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 90.96
PRK15359144 type III secretion system chaperone protein SscB; 90.96
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 90.93
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.92
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 90.89
PF08728717 CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans 90.64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2e-175  Score=1388.36  Aligned_cols=896  Identities=70%  Similarity=1.154  Sum_probs=837.5

Q ss_pred             CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490            1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY   80 (916)
Q Consensus         1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~   80 (916)
                      |+++|+..+++|++++|||..+|++++.++|.|++||+++++++.+|.+|++||++++|||++++|+|||+|.+|+||++
T Consensus         1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             CcchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490           81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR  160 (916)
Q Consensus        81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~  160 (916)
                      ++.+|++++.||.++|+.+.||+..+||+|+|+|++|+||||++++++..++||+++|+|.+|+|..+.++++|.|++||
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCcceeccCC--ccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490          161 VWDIGALRKKTVSPA--DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  238 (916)
Q Consensus       161 vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~  238 (916)
                      +||+.+.+++...++  ...+.....+.++++..+.+++++++||+++|++++|+|+.++|++|++|+.|++|.++..+.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            999999999988877  233344456678999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEe
Q 002490          239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL  318 (916)
Q Consensus       239 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~  318 (916)
                      |++.++++|.++|+|+.|||..++|++.|+|++|+|||+.+++.++++++.++++|.++.||..+++|+|+|+|+++|++
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeC
Q 002490          319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK  398 (916)
Q Consensus       319 ~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~  398 (916)
                      ++++|++..+++.|++++++.|+.+|+.+.+...+.+++..+.  +|.++++++|+|..+.+++++..++|.+.++.+++
T Consensus       321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk  398 (1202)
T KOG0292|consen  321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK  398 (1202)
T ss_pred             cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence            9999999999999999999999999999999999999998775  37799999999999999999988999999999998


Q ss_pred             CCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceEEEeeCCCceeEEEEeCCceEEEEECCEEEEEE
Q 002490          399 DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFD  478 (916)
Q Consensus       399 ~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~~d~~v~l~d  478 (916)
                      ...+... ......++...+.|..+++|++....+.++.|.++.++..+++..+..+..|++.++|.+|+.+...|.+||
T Consensus       399 ~~~~~~~-~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~~~v~lfd  477 (1202)
T KOG0292|consen  399 DSDGVSD-GKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSPDSVTLFD  477 (1202)
T ss_pred             cccccCC-chhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEcCCeEEEEE
Confidence            8766554 355667788899999999999999989999999999999999999888999999999999999999999999


Q ss_pred             cCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCC
Q 002490          479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNG  558 (916)
Q Consensus       479 ~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~  558 (916)
                      +++++.+.+++.+++++|.||+|++++|..++|+|+|++++++.+++++|++||||++|+++|++||+|+||+||++.+|
T Consensus       478 vQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtiriksgawde~gVfiYtT~nHikYal~~G  557 (1202)
T KOG0292|consen  478 VQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENG  557 (1202)
T ss_pred             eecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhheecchheeEeeeceeccCceEEEEehhhhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCch
Q 002490          559 DSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPE  638 (916)
Q Consensus       559 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e  638 (916)
                      |+|+|++++.|+|+++++++.+||++|++.++.+.||++||+||+||.+++|+++++|+++++++||+||+|||++||||
T Consensus       558 D~GIikTLd~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgype  637 (1202)
T KOG0292|consen  558 DSGIIKTLDKPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPE  637 (1202)
T ss_pred             CcceEEecccceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHH
Q 002490          639 VALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKL  718 (916)
Q Consensus       639 ~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l  718 (916)
                      +|||||+|+++||+||++|||+++|++.|++++++.+|++||+.|+.|||+++||+|||++++|++|+|||++|||.+||
T Consensus       638 iAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL  717 (1202)
T KOG0292|consen  638 IALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKL  717 (1202)
T ss_pred             eeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCCCCCCCCC-CCCccCC
Q 002490          719 SKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEG-KAPSLLM  797 (916)
Q Consensus       719 ~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~  797 (916)
                      +||++|++.|+|....+++++|+||++|++++|.++|++++||.+|++||+.++|.++.++++.....+|+. +++.+++
T Consensus       718 ~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~  797 (1202)
T KOG0292|consen  718 SKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQ  797 (1202)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999877779987 7889999


Q ss_pred             CCCCccCCCCCCcccccchhhhhccccCCCCccccccccccCCCcc---ccccccccCCCCCccccccccCccccCCccc
Q 002490          798 PPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGE---ELDMVDVDGLQNGDVAAILEDGEVAEEGEEE  874 (916)
Q Consensus       798 ~~~~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  874 (916)
                      ||+|+...+||||+.+++++||+++.+.+.-...+.  +.+++|++   +.|..++|  +...     .++.+++.++||
T Consensus       798 pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~~~av~~--~~e~~~g~e~~~~e~~l~e--d~~~-----~~d~~g~~~~dE  868 (1202)
T KOG0292|consen  798 PPVPIMPLENWPLLSVSKGTFEGALLSRSSSLAVDR--DDEGDWGEEGWDVELMLGE--DGIL-----FNDGAGEVGEDE  868 (1202)
T ss_pred             CCCccccccCCchhhhhhhhhhHhhhhhcccCcccc--cccccccccchhhhhcccc--cccc-----ccccccccCccc
Confidence            999987778999999999999999984433322222  22233443   22222221  1111     111122234567


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCceeEeeeeeeee
Q 002490          875 EGGWDLEDLELPPEAETPKAPVNARSAVFGATLICVH  911 (916)
Q Consensus       875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (916)
                      ++|||++|+++|++++++.   ++++++||+|..++-
T Consensus       869 ~~gWdv~d~~l~pe~~~~~---~~~~~~~~~p~~~~~  902 (1202)
T KOG0292|consen  869 GGGWDVGDLDLPPEEDTPK---GADDGEFVVPAQGMS  902 (1202)
T ss_pred             ccCcCcccccCCccccccc---cccccceecCCCCCc
Confidence            7899999999999999987   789999999987764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5290 IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>COG5276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases Back     alignment and domain information
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG5290 IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query916
3mkq_A814 Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco 2e-62
2ynp_A604 Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 3e-55
2yno_A310 Yeast Betaprime Cop 1-304h6 Length = 310 6e-51
2ynn_A304 Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 6e-51
2ymu_A577 Structure Of A Highly Repetitive Propeller Structur 2e-31
3mkq_B177 Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco 1e-27
3n0d_A315 Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 2e-26
3n0d_A315 Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 8e-10
3n0e_A315 Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 4e-26
3n0e_A315 Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 8e-10
2gnq_A336 Structure Of Wdr5 Length = 336 4e-26
2gnq_A336 Structure Of Wdr5 Length = 336 1e-09
2co0_A315 Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs 4e-26
2co0_A315 Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs 6e-09
2xl2_A334 Wdr5 In Complex With An Rbbp5 Peptide Recruited To 4e-26
2xl2_A334 Wdr5 In Complex With An Rbbp5 Peptide Recruited To 1e-09
3emh_A318 Structural Basis Of Wdr5-Mll Interaction Length = 3 4e-26
3emh_A318 Structural Basis Of Wdr5-Mll Interaction Length = 3 1e-09
2cnx_A315 Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. 4e-26
2cnx_A315 Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. 6e-09
4a7j_A318 Symmetric Dimethylation Of H3 Arginine 2 Is A Novel 4e-26
4a7j_A318 Symmetric Dimethylation Of H3 Arginine 2 Is A Novel 1e-09
2h9l_A329 Wdr5delta23 Length = 329 4e-26
2h9l_A329 Wdr5delta23 Length = 329 1e-09
3psl_A318 Fine-Tuning The Stimulation Of Mll1 Methyltransfera 5e-26
3psl_A318 Fine-Tuning The Stimulation Of Mll1 Methyltransfera 1e-09
2g9a_A311 Structural Basis For The Specific Recognition Of Me 5e-26
2g9a_A311 Structural Basis For The Specific Recognition Of Me 1e-09
2h13_A317 Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length 5e-26
2h13_A317 Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length 1e-09
2g99_A308 Structural Basis For The Specific Recognition Of Me 5e-26
2g99_A308 Structural Basis For The Specific Recognition Of Me 1e-09
3smr_A312 Crystal Structure Of Human Wd Repeat Domain 5 With 5e-26
3smr_A312 Crystal Structure Of Human Wd Repeat Domain 5 With 1e-09
2h68_A312 Histone H3 Recognition And Presentation By The Wdr5 5e-26
2h68_A312 Histone H3 Recognition And Presentation By The Wdr5 1e-09
2h9m_A313 Wdr5 In Complex With Unmodified H3k4 Peptide Length 6e-26
2h9m_A313 Wdr5 In Complex With Unmodified H3k4 Peptide Length 1e-09
3mxx_A315 Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 7e-26
3mxx_A315 Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 2e-09
1vyh_C410 Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 9e-26
1vyh_C410 Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 6e-16
2ovp_B445 Structure Of The Skp1-Fbw7 Complex Length = 445 2e-20
2ovp_B445 Structure Of The Skp1-Fbw7 Complex Length = 445 1e-10
3sfz_A1249 Crystal Structure Of Full-Length Murine Apaf-1 Leng 9e-18
3sfz_A1249 Crystal Structure Of Full-Length Murine Apaf-1 Leng 3e-09
3shf_A1256 Crystal Structure Of The R265s Mutant Of Full-Lengt 9e-18
3shf_A1256 Crystal Structure Of The R265s Mutant Of Full-Lengt 3e-09
1p22_A435 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 2e-17
3rfh_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 6e-15
3rfh_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 6e-14
3rfg_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 6e-15
3rfg_A319 Crystal Structure Of The Yeast Rack1 Dimer In Space 6e-14
3izb_a319 Localization Of The Small Subunit Ribosomal Protein 6e-15
3izb_a319 Localization Of The Small Subunit Ribosomal Protein 7e-14
1trj_A314 Homology Model Of Yeast Rack1 Protein Fitted Into 1 7e-15
1trj_A314 Homology Model Of Yeast Rack1 Protein Fitted Into 1 7e-14
3jyv_R313 Structure Of The 40s Rrna And Proteins And PE TRNA 7e-15
3jyv_R313 Structure Of The 40s Rrna And Proteins And PE TRNA 6e-14
3dm0_A694 Maltose Binding Protein Fusion With Rack1 From A. T 9e-15
3dm0_A694 Maltose Binding Protein Fusion With Rack1 From A. T 7e-12
3dm0_A694 Maltose Binding Protein Fusion With Rack1 From A. T 1e-11
3dm0_A694 Maltose Binding Protein Fusion With Rack1 From A. T 6e-08
3frx_A319 Crystal Structure Of The Yeast Orthologue Of Rack1, 1e-14
3frx_A319 Crystal Structure Of The Yeast Orthologue Of Rack1, 1e-12
1erj_A393 Crystal Structure Of The C-Terminal Wd40 Domain Of 8e-14
1erj_A393 Crystal Structure Of The C-Terminal Wd40 Domain Of 1e-05
3iza_B1263 Structure Of An Apoptosome-Procaspase-9 Card Comple 8e-14
1nex_B464 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 2e-13
1nex_B464 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 5e-07
2xzm_R343 Crystal Structure Of The Eukaryotic 40s Ribosomal S 5e-13
2xzm_R343 Crystal Structure Of The Eukaryotic 40s Ribosomal S 3e-04
3mks_B464 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 5e-13
3mks_B464 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 7e-07
3fm0_A345 Crystal Structure Of Wd40 Protein Ciao1 Length = 34 8e-13
3fm0_A345 Crystal Structure Of Wd40 Protein Ciao1 Length = 34 1e-06
3zey_7318 High-resolution Cryo-electron Microscopy Structure 3e-12
3zey_7318 High-resolution Cryo-electron Microscopy Structure 6e-12
4aow_A340 Crystal Structure Of The Human Rack1 Protein At A R 3e-10
4aow_A340 Crystal Structure Of The Human Rack1 Protein At A R 6e-09
2zkq_a317 Structure Of A Mammalian Ribosomal 40s Subunit With 3e-10
2zkq_a317 Structure Of A Mammalian Ribosomal 40s Subunit With 7e-09
2pbi_B354 The Multifunctional Nature Of Gbeta5RGS9 REVEALED F 5e-10
2pbi_B354 The Multifunctional Nature Of Gbeta5RGS9 REVEALED F 3e-04
2hes_X330 Cytosolic Iron-sulphur Assembly Protein- 1 Length = 6e-10
2hes_X330 Cytosolic Iron-sulphur Assembly Protein- 1 Length = 1e-06
3ow8_A321 Crystal Structure Of The Wd Repeat-Containing Prote 5e-09
3ow8_A321 Crystal Structure Of The Wd Repeat-Containing Prote 3e-04
3iz6_a380 Localization Of The Small Subunit Ribosomal Protein 9e-09
3sn6_B351 Crystal Structure Of The Beta2 Adrenergic Receptor- 2e-07
3sn6_B351 Crystal Structure Of The Beta2 Adrenergic Receptor- 6e-05
1got_B340 Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer 2e-07
1got_B340 Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer 1e-04
1a0r_B340 Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- 2e-07
1a0r_B340 Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- 1e-04
1gg2_B340 G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet 2e-07
1gg2_B340 G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet 7e-05
2bcj_B340 Crystal Structure Of G Protein-coupled Receptor Kin 2e-07
2bcj_B340 Crystal Structure Of G Protein-coupled Receptor Kin 7e-05
3odt_A313 Crystal Structure Of Wd40 Beta Propeller Domain Of 8e-07
3cfv_B414 Structural Basis Of The Interaction Of Rbap46RBAP48 1e-06
3cfs_B414 Structural Basis Of The Interaction Of Rbap46RBAP48 1e-06
2yba_A422 Crystal Structure Of Nurf55 In Complex With Histone 2e-06
3c99_A432 Structural Basis Of Histone H4 Recognition By P55 L 2e-06
2xyi_A430 Crystal Structure Of Nurf55 In Complex With A H4 Pe 2e-06
1r5m_A425 Crystal Structure Of The C-Terminal Wd40 Domain Of 2e-06
3gfc_A425 Crystal Structure Of Histone-Binding Protein Rbbp4 2e-06
4ggd_A431 Structural Analysis Of Human Cdc20 Supports Multisi 3e-05
4gga_A420 Structural Analysis Of Human Cdc20 Supports Multi-S 3e-05
1nr0_A611 Two Seven-Bladed Beta-Propeller Domains Revealed By 6e-05
4ggc_A318 Structural Analysis Of Human Cdc20 Supports Multi-S 7e-05
3jpx_A402 Eed: A Novel Histone Trimethyllysine Binder Within 2e-04
3jzn_A366 Structure Of Eed In Apo Form Length = 366 3e-04
2qxv_A361 Structural Basis Of Ezh2 Recognition By Eed Length 3e-04
3acp_A417 Crystal Structure Of Yeast Rpn14, A Chaperone Of Th 3e-04
3iiy_A365 Crystal Structure Of Eed In Complex With A Trimethy 3e-04
3vl1_A420 Crystal Structure Of Yeast Rpn14 Length = 420 3e-04
3iiw_A365 Crystal Structure Of Eed In Complex With A Trimethy 3e-04
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 Back     alignment and structure 
Iteration: 1

 Score =  237 bits (604), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 201/819 (24%), Positives = 356/819 (43%), Gaps = 100/819 (12%)
Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F  +S+RVKG+ FH   PW+L +L+SG +++W+Y     +      + PVR   F   + 
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
             + G DD++I+V+NY     +     H DYIR++  H   P+++S SDD T+++WNW++
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
              +     GH H+VMC +F+PK+     S  LD+TV+VW +G                S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173
Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
             N  L             G +RGVN+  ++  P  P +++ +DD  +K+W   +TK+  
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSC- 220
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           V TL GHM+NVS  +FH    II+S SED ++++W+ +     +T     +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 301 --EMNLLAAGHDSGMIVFKLERERPAFAV--------SGDSLFYAKDRF---LRYYEFST 347
               N +A+G D+G  V  L  + P  ++        SG     A D F   +R  E   
Sbjct: 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVE 340
Query: 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
           Q +   +  +  GS  +   P++L++SP    V +  D   G Y +Y           ++
Sbjct: 341 QDEPLSLQTKELGSVDV--FPQSLAHSPNGRFVTVVGD---GEYVIYT----------AL 385
Query: 408 QDAKKGLGGSAIFI---ARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTG 464
               K  G    F+     N +A++D++                  +  A D +F   +G
Sbjct: 386 AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF---SG 442
Query: 465 NLL-CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHA--------III 515
            LL  +++  V  FD     ++  +     K V+WS++ E V +++ ++         ++
Sbjct: 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN-AKDVIWSDNGELVMIVNTNSNGDEASGYTLL 501
Query: 516 ASKKLVHQCTLHETI------------------RVKSGAWDDNGVFIYTT-LNHIKYCLP 556
            +K    +   +  I                   + SG W  + VFI+TT  N + Y + 
Sbjct: 502 FNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGD-VFIFTTATNRLNYFVG 560
Query: 557 NGDSGIIR-TLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMS 615
                +   T ++ +       N ++  DR+       I      F+   LR   +  + 
Sbjct: 561 GKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIE 620
Query: 616 MIRNSQLCGQAMIA---YLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDE 672
            +  +     ++     +L+ + + E AL+   D+  +F LAL+ G + +A     +   
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESA 680
Query: 673 KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVM 732
           +  W  LG  +L++ N  +   A+    + E L  L+    N + L  + K AE      
Sbjct: 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFN 740
Query: 733 GQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQD 771
             F+     GD++    +L  +     A    S +GL D
Sbjct: 741 LAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 Back     alignment and structure
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 Back     alignment and structure
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 Back     alignment and structure
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 Back     alignment and structure
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 177 Back     alignment and structure
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 Back     alignment and structure
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 Back     alignment and structure
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 Back     alignment and structure
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 Back     alignment and structure
>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 Back     alignment and structure
>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 Back     alignment and structure
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 Back     alignment and structure
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 Back     alignment and structure
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 Back     alignment and structure
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 Back     alignment and structure
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 Back     alignment and structure
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 Back     alignment and structure
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 Back     alignment and structure
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 Back     alignment and structure
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 Back     alignment and structure
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 Back     alignment and structure
>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 Back     alignment and structure
>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 Back     alignment and structure
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 Back     alignment and structure
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 Back     alignment and structure
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 Back     alignment and structure
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 Back     alignment and structure
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 Back     alignment and structure
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 Back     alignment and structure
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 Back     alignment and structure
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 Back     alignment and structure
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 Back     alignment and structure
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 Back     alignment and structure
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 Back     alignment and structure
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 Back     alignment and structure
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 Back     alignment and structure
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 Back     alignment and structure
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 Back     alignment and structure
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 Back     alignment and structure
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 Back     alignment and structure
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 Back     alignment and structure
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 Back     alignment and structure
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 Back     alignment and structure
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 Back     alignment and structure
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 Back     alignment and structure
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 Back     alignment and structure
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 Back     alignment and structure
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 Back     alignment and structure
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 Back     alignment and structure
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 Back     alignment and structure
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 Back     alignment and structure
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 Back     alignment and structure
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 Back     alignment and structure
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 Back     alignment and structure
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 Back     alignment and structure
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 Back     alignment and structure
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 Back     alignment and structure
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 Back     alignment and structure
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 Back     alignment and structure
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 Back     alignment and structure
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 Back     alignment and structure
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 Back     alignment and structure
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 Back     alignment and structure
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 Back     alignment and structure
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 Back     alignment and structure
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 Back     alignment and structure
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 Back     alignment and structure
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 Back     alignment and structure
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 Back     alignment and structure
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 Back     alignment and structure
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 Back     alignment and structure
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 Back     alignment and structure
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 Back     alignment and structure
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 Back     alignment and structure
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 Back     alignment and structure
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 Back     alignment and structure
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 Back     alignment and structure
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 Back     alignment and structure
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 Back     alignment and structure
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 Back     alignment and structure
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 Back     alignment and structure
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 Back     alignment and structure
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 Back     alignment and structure
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 Back     alignment and structure
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 Back     alignment and structure
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 Back     alignment and structure
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 Back     alignment and structure
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 Back     alignment and structure
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 Back     alignment and structure
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 Back     alignment and structure
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 Back     alignment and structure
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 Back     alignment and structure
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 Back     alignment and structure
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 Back     alignment and structure
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 Back     alignment and structure
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 Back     alignment and structure
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 Back     alignment and structure
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 Back     alignment and structure
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 Back     alignment and structure
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 Back     alignment and structure
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 Back     alignment and structure
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 Back     alignment and structure
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 Back     alignment and structure
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 Back     alignment and structure
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 Back     alignment and structure
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 Back     alignment and structure
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 Back     alignment and structure
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 Back     alignment and structure
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 Back     alignment and structure
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 Back     alignment and structure
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 Back     alignment and structure
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 Back     alignment and structure
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 Back     alignment and structure
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 Back     alignment and structure
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 Back     alignment and structure
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 916
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 3e-42
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-30
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-24
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 1e-18
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 5e-32
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 6e-22
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 2e-09
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 2e-27
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 3e-18
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 3e-10
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 5e-25
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 2e-21
d2ovrb2342 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing 3e-21
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 3e-24
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 5e-16
d1p22a2293 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be 1e-08
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 3e-20
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 3e-19
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 2e-15
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 3e-11
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 4e-11
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 9e-20
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 7e-13
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 1e-09
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 5e-09
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 1e-18
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 5e-16
d1nexb2355 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' 7e-06
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 2e-18
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 2e-18
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 5e-12
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 3e-10
d1sq9a_393 b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake 4e-05
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 1e-17
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 5e-08
d1k32a3360 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar 3e-07
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 1e-17
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 5e-14
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 1e-06
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 2e-17
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 8e-17
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 1e-10
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 3e-17
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 2e-16
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 3e-17
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 2e-10
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 2e-06
d1jmxb_346 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 3e-04
d1pgua1325 b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba 2e-14
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 9e-14
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 1e-12
d1pgua2287 b.69.4.1 (A:327-613) Actin interacting protein 1 { 5e-11
d1l0qa2301 b.69.2.3 (A:1-301) Surface layer protein {Archaeon 3e-13
d1l0qa2301 b.69.2.3 (A:1-301) Surface layer protein {Archaeon 1e-04
d1l0qa2301 b.69.2.3 (A:1-301) Surface layer protein {Archaeon 0.002
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 1e-11
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 6e-08
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 4e-05
d2bbkh_355 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 2e-04
d1pbyb_337 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 2e-10
d1pbyb_337 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 2e-09
d1pbyb_337 b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase 4e-05
d1mdah_368 b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { 5e-10
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 4e-09
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 6e-08
d1qksa2432 b.70.2.1 (A:136-567) C-terminal (heme d1) domain o 0.004
d1hzua2426 b.70.2.1 (A:118-543) C-terminal (heme d1) domain o 4e-07
d1hzua2426 b.70.2.1 (A:118-543) C-terminal (heme d1) domain o 7e-06
d1hzua2426 b.70.2.1 (A:118-543) C-terminal (heme d1) domain o 3e-05
d1ri6a_333 b.69.11.1 (A:) Putative isomerase YbhE {Escherichi 9e-07
d1ri6a_333 b.69.11.1 (A:) Putative isomerase YbhE {Escherichi 6e-06
d1ri6a_333 b.69.11.1 (A:) Putative isomerase YbhE {Escherichi 9e-05
d1ri6a_333 b.69.11.1 (A:) Putative isomerase YbhE {Escherichi 5e-04
d1qnia2441 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter 0.004
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  154 bits (390), Expect = 3e-42
 Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 9/308 (2%)

Query: 9   SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS 68
            + V  + FH     ++++     I++WDY  G        H   V+ + F  S  L  S
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 69  GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
              D  IK+W+++   C+ T+ GH   + +V        IVSAS D+TI++W  Q+  C+
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188
              TGH  +V     +    L+ S S DQTVRVW +      T     ++     +   +
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-----ATKECKAELREHRHVVECI 191

Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248
               ++    +      G          P ++SG+ D+ +K+W ++      + TL GH 
Sbjct: 192 SWAPESSYSSI--SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHD 247

Query: 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           N V  V+FH+    I+S ++DK++RVWD   +  ++T          L  H     +  G
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

Query: 309 HDSGMIVF 316
                +  
Sbjct: 308 SVDQTVKV 315
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query916
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 100.0
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 100.0
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 100.0
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 100.0
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 100.0
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 100.0
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 100.0
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 100.0
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 100.0
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 100.0
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 100.0
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 100.0
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 100.0
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 100.0
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.97
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.97
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.96
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.95
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.95
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.94
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.93
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.92
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.92
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.92
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.91
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.91
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.9
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.85
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.85
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.82
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.8
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.69
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 99.67
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 99.6
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 99.55
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 99.52
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 99.47
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 99.47
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 99.46
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 99.45
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 99.44
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 99.43
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 99.39
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 99.38
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 99.38
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 99.38
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 99.35
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 99.32
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 99.17
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 99.13
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 98.99
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 98.92
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 98.66
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 98.51
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 98.15
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.84
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 97.67
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 97.6
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 97.57
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 97.31
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 97.2
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.03
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 96.96
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 96.93
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 96.67
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 96.61
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 96.56
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 96.47
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 96.27
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.17
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 95.8
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 95.45
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 95.44
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 95.39
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 95.37
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 95.25
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.07
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 94.88
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 94.47
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 94.17
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 93.82
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 93.59
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 93.56
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 93.51
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 93.27
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 93.26
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 92.35
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 92.3
d1xipa_381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 91.81
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 91.72
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 91.68
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 91.16
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 89.98
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 84.86
d1v04a_340 Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory 84.58
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 84.52
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-45  Score=291.23  Aligned_cols=271  Identities=15%  Similarity=0.259  Sum_probs=193.8

Q ss_pred             CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-----EEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf             25787899999179998999966992999987878248-----7961546598999991599999999789849999779
Q 002490            7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK   81 (916)
Q Consensus         7 ~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~   81 (916)
                      .|...|+|++|+|++++|++|+ ||.|+|||+.++...     ....+|.+.|++++|+|++++|++++.|+.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf             9999289999989999999997-998899773677633116876404889968999986799889886123321111111


Q ss_pred             C--CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf             9--91589981389988999990899999999899929999699995899970799865999992499999999799919
Q 002490           82 M--HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV  159 (916)
Q Consensus        82 ~--~~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~dg~i  159 (916)
                      .  .+....+..|...+.++.|+|++.++++++.++.|++|++.++++.....+|...+.+++|++++..+++++.|+.+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v  207 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11111111111111111111111111111111111111111111111111111111111101234443211223566553


Q ss_pred             EEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
Q ss_conf             99997998300016886511211465443265112599998156787349998399998999978991999977898610
Q 002490          160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW  239 (916)
Q Consensus       160 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~I~iwd~~~~~~~  239 (916)
                      ++||++..+..                            ....+...+.+++|+|+++++++++.++.+++|++....  
T Consensus       208 ~i~d~~~~~~~----------------------------~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~--  257 (337)
T d1gxra_         208 RSWDLREGRQL----------------------------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--  257 (337)
T ss_dssp             EEEETTTTEEE----------------------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--
T ss_pred             CCCCCCCCEEE----------------------------CCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC--
T ss_conf             21111110000----------------------------024666615799971530300000025642111111111--


Q ss_pred             EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf             12356068888599999049999999959992999979988115775135774899999459986999837
Q 002490          240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD  310 (916)
Q Consensus       240 ~~~~~~~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~~~~la~g~~  310 (916)
                       ......|...|++++|+|++++|++++.|+.|++||..+++.+..+. +...+.+++|+|++++|++++.
T Consensus       258 -~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         258 -KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             -EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEET
T ss_pred             -CCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC-CCCCEEEEEEECCCCEEEEEEC
T ss_conf             -00001245654169998999999999489969999899997999926-9998799999279999999908
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure