Citrus Sinensis ID: 002638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90
Protein Sequence
MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEEcccccccccccccHHcccccccccccccccccccccccEEccccccccccccccccccccccEEcccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHEEcccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mssqpnkftkpakptsqgqqsssanasrsssLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNClyessndpkpavkKESVRLLALVCELHSELTSTHVTKIISHIVKRlkdsdsgmkEACRDSIGSLSKLYlngkeenngtvvGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVecasdppvvAFQKLCARICKLLSNQNFMAKASLLPVVgslsqvgaiapqslEPLLQSIHECLGSTDWATRKAAADALSALALHssnlvidgaTSTLTVLEAcrfdkikpvRDSMNEALQLWKKIAgkvdvgsddqksspvpggkapepgedlknlnpsdkraelsakgplngsspasasltkgkagnisEKAVVILKKkapalsdkelnpEFFQnlsrgsgdlpvevvvprrclnssnsnneeesdpsdldskgrsnrmgnsqtddfsvslnnkhrsidrgtaggngkdprmrapdverelsgnragfsktdsqaegsfinnKGNWLAIQRQLMQLERQQAHLMNMLQdfmggshdSMVTLENRVRGLERVVEDMARDLsissgrrgsnfamgfegsnnrslgkyngfaeysgtkyngrtpfgerfaqsdgvaastrgrgpswrsdmsdawDFTAYCasrngqlgsrrapgggpvdsrspksehdndqvggrrawdkgtgpvrlgegpsarsVWQASKDEATLEAIRVAgedsgtsrsarvaipeltaeamgddnvgqerdpiwtswtnamdaiqvgdlDTAYAEVVSTGDDFLLVKLmdrsgpvvdQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLengphvlgiPMELKKELLLNLHeasttmdppedwegpapdQLLLQLASAWEIELQQFDK
Flexible Loop (DISEMBL)
mssqpnkftkpakptsqgqqsssanasRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELhseltsthvtKIISHIVkrlkdsdsgmKEACRDSIGSLSKLYlngkeenngTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAgkvdvgsddqksspvpggkapepgedlknlnPSDKRAELsakgplngsspasasltkgkagniseKAVVILKKKapalsdkelnPEFFQnlsrgsgdlpvEVVVPRRclnssnsnneeesdpsdldskgrsnrmgnsqtddfsvslnnkhrsidrgtaggngkdprmrapdverelsgnragfsktdsqaegSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDlsissgrrgsnfaMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFgerfaqsdgvaastrgrgpswrsdMSDAWDFTAYCASRNGQLGSRRApgggpvdsrspksehdndqvggrrawdkgtgpvrlgegpsarsvwqaSKDEATLEAIrvagedsgtsrsarVAIPeltaeamgddnvgQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Low Complexity Region (SEG)
MSSQPNKFTKPAKPTsqgqqsssanasrssslssHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKaaadalsalalhssNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLnssnsnneeesDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMelkkelllnlHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Disordered region (IsUnstruct)
********************************************************THQIAIEDLEKTIQTLSQESLPMLLNCLYE************SVRLLALVCELHSELTSTHVTKIISHIVKRL*************SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV****************************************************************VVIL****************************VEVVV*****************************************************************************************FINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGG****MVTLENRVRGLERV*********************************YNGFAEYS*************************************AWDFTAYCA******************************************************************************************************DPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLH*******************LLLQLASAWEIE******
Disordered Region (DISOPRED)
*****************************************KQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN*****VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS**WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK*******************************************************************************************************V************************************************************************************************************************************************************************************************************************************************************************************************************************************************WTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEAST*******WEGPAPDQLLLQLASAWEIELQQF**
Disordered Region (DISEMBL)
***********************************LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV******************EPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNS*************************SQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQ***************RSDMSDAWDFTAYCASRNGQLG***************************RAWDKGTGPVRLG***********SKDEATLEAIRVAG********ARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Disordered Region (DISPRO)
**********************************HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA***********************************************************************************NPEFFQNLSRGSGDLPVEVVVPRR************************************************************************************GSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSI*************************************************************************************************************************************************RV*GE****************************RDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADxxxxxxxxxxxxxxxxxxxxxSLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSxxxxxxxxxxxxxxxxxxxxxLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	898	2.2.26 [Sep-21-2011]
Q9T041	864	Microtubule-associated pr	yes	no	0.940	0.978	0.613	0.0
F4I6M4	821	Microtubule-associated pr	no	no	0.848	0.928	0.534	0.0

>sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/914 (61%), Positives = 668/914 (73%), Gaps = 69/914 (7%)

Query: 3   SQPNKFTKPAKPTSQGQQSSSA--NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           S P      AKPT   + SS A  + S S SL+S  AMVE+KQKILTS+SKLADRDT+QI
Sbjct: 2   STPTTSGSAAKPTRPARSSSLATRSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQI 61

Query: 61  AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
           A+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TK
Sbjct: 62  AVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTK 121

Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMM 175
           II+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE   T      VGLFVKPLFEAM 
Sbjct: 122 IIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMG 181

Query: 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235
           EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQ
Sbjct: 182 EQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQ 241

Query: 236 VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295
           VGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ +   ST+TVLE C
Sbjct: 242 VGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETC 301

Query: 296 RFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKR 354
           RFDKIKPVR+S+ EALQLWKKI+GK VD  SDD K S      + + GE   NL      
Sbjct: 302 RFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ 355

Query: 355 AELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSG 414
           A+L  K   +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R   
Sbjct: 356 ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS 414

Query: 415 DLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRG 474
              VEVVVPRRC N    N+EEES   DL++ G SNR+ N+Q DD  V          +G
Sbjct: 415 ---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KG 457

Query: 475 TAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQL 529
              GNG   R    D       +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QL
Sbjct: 458 RFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQL 517

Query: 530 ERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEG 589
           ERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N   GF  
Sbjct: 518 ERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF-- 574

Query: 590 SNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAY 649
                 GKYN FA Y   KYNGR P GER +Q+DG       RG  W SDM+D W    +
Sbjct: 575 ------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPH 622

Query: 650 CASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSV 706
            ASRNGQ G RR          SP+SE ++N+ +G GRR WD K +G +R GEGPSARSV
Sbjct: 623 AASRNGQAGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSV 672

Query: 707 WQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAM 764
           WQASKDEATLEAIRVAGED    R  RVA+ PE  AEAMGDD N GQERDPIW SW+NAM
Sbjct: 673 WQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAM 730

Query: 765 DAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLF 824
            +++VGD+D AYAEV+  GD  L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+
Sbjct: 731 HSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLY 790

Query: 825 DICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQ 884
           DICLSW QQL+ELVL++G    G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++Q
Sbjct: 791 DICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQ 850

Query: 885 LASAWEIELQQFDK 898
           LAS WEI+LQQFDK
Sbjct: 851 LASVWEIDLQQFDK 864

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.
Arabidopsis thaliana (taxid: 3702)

>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/885 (53%), Positives = 599/885 (67%), Gaps = 123/885 (13%)

Query: 38  MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--SQESLPMLLNCLYESSNDPKPAV 95
           MVE+KQ+ILTSLS+L DRDT+QIA++DLEK + ++  S E LP+LL+CL++SS+D K  V
Sbjct: 34  MVELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPV 93

Query: 96  KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155
           K+ES+RLL+ +C  +++L+ + + KIISHIVKRLKD+D+G+++ACRD+IGSLS  +L  K
Sbjct: 94  KRESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEK 153

Query: 156 EENNG-----TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR 210
           E  NG     ++VGLF KPLFEAM EQNK +QSGAA+CM KM++ A++PPV AFQKLC R
Sbjct: 154 EVENGNYVGSSLVGLFAKPLFEAMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPR 213

Query: 211 ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270
           I KLL++ N++ KASLLPVVGSLSQVGAIAPQSLE LL SIHECLG T+W TRKAAAD L
Sbjct: 214 ISKLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVL 273

Query: 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-DDQK 329
            +LA+HSS+LV D   STLT LEACRFDKIKPVR+S++EAL +WK IAGK + G+ DDQK
Sbjct: 274 ISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQK 333

Query: 330 SSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLT-------KGKAGNIS 382
                              + S ++  L   G  +  S   A L           + +  
Sbjct: 334 -------------------DVSSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSI 374

Query: 383 EKAVVILKKKAPALSDKELNPEFFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPS 441
            KAV+IL+KKAP L+ K+LNPEFFQ L  RGSGD+PVEV++P R  NSSNSN E+ESD +
Sbjct: 375 SKAVLILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDAN 434

Query: 442 DLDSKGRSN---RMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNR 498
               + RSN   R     T         + + +D    GG   + R+RA D      G+ 
Sbjct: 435 TSVLRSRSNGLCRTAGVHTKQRHFGDFAREKWVDERMNGG---ESRLRAFD------GDH 485

Query: 499 AGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRV 558
               + D+        N+GNW  +QRQL+ LERQQ H+MNMLQDFMGGSHD M++LENRV
Sbjct: 486 TEVIQADTS------ENRGNWPPLQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRV 539

Query: 559 RGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGER 618
           RGLER+VE+M+R++SI SG RG   A                                  
Sbjct: 540 RGLERIVEEMSREMSIQSGARGKATA---------------------------------- 565

Query: 619 FAQSDGVAASTRGRGPSWRSDMSDAWDFTAYC-ASRNGQLGSRRAPGGGPVDSRSPKSEH 677
                           SWRSD+ D WD   Y  +SRN Q  +R+  G GP          
Sbjct: 566 ----------------SWRSDV-DGWDSPNYGPSSRNTQTSTRKIRGTGP---------- 598

Query: 678 DNDQVGG-RRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAI 736
            ++Q G  RRAWDK +  +RLGEGPSARSVWQASKDEATLEAIRVAGED GTSR+ RV+I
Sbjct: 599 -SEQSGNSRRAWDKSSVAIRLGEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSI 657

Query: 737 PELTAEAM---GDDNV-GQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLM 792
           PE  AEAM    DDN  GQ+ DPIWT W+N++ A++VGD D+A+AEV+STGDD LLVKLM
Sbjct: 658 PE--AEAMMDEDDDNRGGQQGDPIWTCWSNSVHALRVGDTDSAFAEVLSTGDDHLLVKLM 715

Query: 793 DRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMEL 852
           D++GPV+DQLS+++ NE +H+I QFLL+  L+DICLSWIQQL+E+ +ENG   +GIP+EL
Sbjct: 716 DKTGPVLDQLSSDMGNEAIHSIAQFLLDHTLYDICLSWIQQLLEVSVENGADFMGIPLEL 775

Query: 853 KKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFD 897
           KKELLLNLHEA +T DPPEDWEG APD LL++LAS W IE+Q FD
Sbjct: 776 KKELLLNLHEALSTTDPPEDWEGLAPDHLLVELASNWNIEIQHFD 820

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	898
359494115	904	PREDICTED: microtubule-associated protei	0.979	0.973	0.707	0.0
255563981	936	conserved hypothetical protein [Ricinus	0.981	0.941	0.719	0.0
449519460	926	PREDICTED: microtubule-associated protei	0.979	0.950	0.656	0.0
356569846	923	PREDICTED: microtubule-associated protei	0.951	0.925	0.678	0.0
357459403	924	Microtubule-associated protein TORTIFOLI	0.948	0.922	0.638	0.0
28200788	862	potyviral helper component protease-inte	0.906	0.944	0.640	0.0
42567178	864	Microtubule-associated protein TORTIFOLI	0.940	0.978	0.613	0.0
4490702	826	hypothetical protein [Arabidopsis thalia	0.902	0.980	0.622	0.0
297799280	864	hypothetical protein ARALYDRAFT_913839 [	0.905	0.940	0.619	0.0
110736009	796	hypothetical protein [Arabidopsis thalia	0.868	0.979	0.613	0.0

>gi|359494115|ref|XP_002281360.2| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera]

 Score = 1290 bits (3337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/922 (70%), Positives = 761/922 (82%), Gaps = 42/922 (4%)

Query: 1   MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           M+S   K +KPAKP +    S S+  S SSS+S+HLAMVE+KQ+ILTSLSKL+DRDTHQI
Sbjct: 1   MASGGTKSSKPAKPPNPSSTSQSSVRSTSSSVSTHLAMVELKQRILTSLSKLSDRDTHQI 60

Query: 61  AIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119
           A++DL   IQ LS +S + +LLNCLYE+S+DPKP VKKES+RLLAL+C  H + TS+H+T
Sbjct: 61  AVDDLHNLIQNLSTDSGVSILLNCLYEASSDPKPLVKKESLRLLALLCTSHPDSTSSHLT 120

Query: 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG-----TVVGLFVKPLFEAM 174
           KIISHIV+RLKDSD+G+++ACRD+IG+LS LYL G           +VV LFVKPLFEAM
Sbjct: 121 KIISHIVRRLKDSDTGVRDACRDAIGTLSSLYLKGDGGGGDNGGLGSVVSLFVKPLFEAM 180

Query: 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234
           +EQNKGVQSGAAMC+AKMVECASDPPV AFQKLC+R+CKLL+N NF+AKA+LLPVVGSLS
Sbjct: 181 IEQNKGVQSGAAMCLAKMVECASDPPVGAFQKLCSRVCKLLNNPNFLAKAALLPVVGSLS 240

Query: 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294
           QVGAIAPQSLE +LQSIH+CLGS DWATRKAAAD LS LA+HS+NL++DGATSTL  LEA
Sbjct: 241 QVGAIAPQSLEAVLQSIHDCLGSPDWATRKAAADTLSTLAMHSNNLIMDGATSTLAALEA 300

Query: 295 CRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKAPEPGE-----DLKNLN 349
           CRFDKIKPVRDSM EALQLWKK+AGK D  SDDQK++      + EP E       K  N
Sbjct: 301 CRFDKIKPVRDSMTEALQLWKKVAGKGDGVSDDQKAT------SHEPAEFSDKNGPKVSN 354

Query: 350 PSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPA-LSDKELNPEFFQN 408
           P +++AE S K   NGSSPA+ S++K K G+I +KAV ILKKK PA L+DKELNPEFFQ 
Sbjct: 355 PGERKAEASGKDSSNGSSPANDSVSKTKGGSIPDKAVGILKKKVPAALTDKELNPEFFQK 414

Query: 409 L-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNK 467
           L +RGS DLPVEVVVPRRCLNS+NS+NEEES+P+D D +GRSN M   + DD      ++
Sbjct: 415 LETRGSDDLPVEVVVPRRCLNSANSHNEEESEPNDADLRGRSNLM---EPDDVRDKWADE 471

Query: 468 HRSIDRGTAGGNGKDPRMRAPDV-------ERELSGNRAGFSKTDSQAEGSFINNKGNWL 520
                      NGKD R RA D+       +RE SG+R GFSKTD Q+EGSF+NNKGNWL
Sbjct: 472 RV---------NGKDSRTRAFDIDDRIDINQRESSGSRVGFSKTDVQSEGSFMNNKGNWL 522

Query: 521 AIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRG 580
           AIQRQL+QLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRG
Sbjct: 523 AIQRQLLQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRG 582

Query: 581 SNFAMGFEGSNNRSLGKYNGFAEYSGTKY----NGRTPFGERFAQSDGVAASTRGRGPSW 636
            NF +GFEGS+NRSLGKYNG+ +YS  K     +GR PFGERF  SDG+A+  RGRGP W
Sbjct: 583 GNFMVGFEGSSNRSLGKYNGYPDYSSAKLGRGSDGRIPFGERFGPSDGIASGMRGRGPPW 642

Query: 637 RSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVR 696
           RSDM++AWDF  Y A +NGQ+GSRRA   GPVD RSPK+EH++DQVG RRAWDKG  PVR
Sbjct: 643 RSDMAEAWDFPTYGAPKNGQMGSRRALVSGPVDGRSPKAEHESDQVGNRRAWDKGAAPVR 702

Query: 697 LGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPI 756
            GEGPSARSVWQASKDEATLEAIRVAGEDSG +R+ARVA+PELTAEAMGDDNV  ERDP+
Sbjct: 703 FGEGPSARSVWQASKDEATLEAIRVAGEDSGATRTARVAMPELTAEAMGDDNVVPERDPV 762

Query: 757 WTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQ 816
           WTSW+NAMDA+ VGD+D+AYAEV+STGDD LLVKLMDRSGPV+DQLSN+VA+E+LHA+GQ
Sbjct: 763 WTSWSNAMDALHVGDMDSAYAEVLSTGDDLLLVKLMDRSGPVIDQLSNDVASEILHAVGQ 822

Query: 817 FLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGP 876
           FLLEQNLFDICLSWIQQLV++V+ENGP ++GIP+E+K+ELLLNL+EAS T DPPEDWEG 
Sbjct: 823 FLLEQNLFDICLSWIQQLVDVVMENGPDIMGIPIEVKRELLLNLNEASATTDPPEDWEGA 882

Query: 877 APDQLLLQLASAWEIELQQFDK 898
            PDQLLLQLASAW I+LQQ +K
Sbjct: 883 TPDQLLLQLASAWGIDLQQLEK 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563981|ref|XP_002522990.1| conserved hypothetical protein [Ricinus communis] gi|223537802|gb|EEF39420.1| conserved hypothetical protein [Ricinus communis]

 Score = 1239 bits (3206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/935 (71%), Positives = 758/935 (81%), Gaps = 54/935 (5%)

Query: 1   MSSQPNKFTKPA-KPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQ 59
           MS+Q  K  +P  KP++Q Q +S     RSSSLS+HLAMVE+KQ+I+TSLSKLADRDTHQ
Sbjct: 1   MSTQAPKSLRPTTKPSNQNQPNS-----RSSSLSTHLAMVELKQRIITSLSKLADRDTHQ 55

Query: 60  IAIEDLEKTIQTLSQESLPMLLNCLYESSN---DPKPAVKKESVRLLALVCELHSELTST 116
           IAIEDL    Q++S E+LPMLLN LY+S +   + KP+VKKES+ LL+L C+ H +LT  
Sbjct: 56  IAIEDLHSITQSISPEALPMLLNSLYDSLSDSSNSKPSVKKESLHLLSLTCQSHRDLTLP 115

Query: 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN-------------GTVV 163
           H+TKIISHIVKRLKDSDS +K+AC D+IG LS LYL     N              G++V
Sbjct: 116 HLTKIISHIVKRLKDSDSSVKDACGDAIGVLSTLYLKSGNGNGGGGEGGGGDNNAVGSMV 175

Query: 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-----------SDPPVVAFQKLCARIC 212
           GLFV+PLFEAM EQNKGVQSGAA+CMAKMV+ A           S+ P  AFQKLC RIC
Sbjct: 176 GLFVRPLFEAMGEQNKGVQSGAAVCMAKMVDSAAMEANDGARNGSNVPTGAFQKLCPRIC 235

Query: 213 KLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272
           KLL+ QNF AKA+LL VV SL+QVGAIAPQ LEPLLQSIH+CLGSTDWATRKAAADALSA
Sbjct: 236 KLLNGQNFQAKAALLGVVTSLAQVGAIAPQGLEPLLQSIHDCLGSTDWATRKAAADALSA 295

Query: 273 LALHSSNLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-DDQKS 330
           LALHSS+L+ D  A+STLTVLE+CRFDKIKPVRDSM EALQ WKKIAGK + G  DDQK+
Sbjct: 296 LALHSSSLITDEVASSTLTVLESCRFDKIKPVRDSMTEALQQWKKIAGKAEDGVLDDQKA 355

Query: 331 SPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILK 390
           S        E   D K  NP D++ E  AK    GSSP   S+ K KAG+I +KAVVILK
Sbjct: 356 S-----SCAESSSD-KIPNPDDQKTESLAKDSTRGSSPNMDSVPKSKAGSIPDKAVVILK 409

Query: 391 KKAPALSDKELNPEFFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRS 449
           KKAPAL+DK+LNPEFFQ L +RGSGDLPVEVVV RRC+ SSN N EEE +  D +S+GRS
Sbjct: 410 KKAPALTDKDLNPEFFQKLETRGSGDLPVEVVVSRRCITSSNLN-EEEPELHDSESRGRS 468

Query: 450 NRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRA-----PDVE-RELSGNRAGFSK 503
           NR+ NSQ+DD   S + K+R+I+RG AG   KD R RA     PDV  RE SG+RAGFSK
Sbjct: 469 NRLANSQSDDLHGSFS-KYRNIERGNAG---KDARNRAFGDDRPDVNPRESSGSRAGFSK 524

Query: 504 TDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLER 563
           +D Q+EGSFIN+KGNWLAIQRQL+QLERQQAHLMNMLQDFMGGSHDSM+TLENRVRGLER
Sbjct: 525 SDGQSEGSFINSKGNWLAIQRQLLQLERQQAHLMNMLQDFMGGSHDSMITLENRVRGLER 584

Query: 564 VVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSD 623
           +VEDMARDLSISSGRRGSNF +GFEGSN R LGKYNGF+EYS  KYN R PFGERF QSD
Sbjct: 585 IVEDMARDLSISSGRRGSNFPIGFEGSN-RPLGKYNGFSEYSNAKYNARVPFGERFTQSD 643

Query: 624 GVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVG 683
             A+  RGRGP+WRSDMSDAWDF AY ASRNG + SRRAP GG +D RSPKSE ++DQVG
Sbjct: 644 VTASGMRGRGPNWRSDMSDAWDFPAYGASRNGPISSRRAPSGGSIDGRSPKSEPESDQVG 703

Query: 684 GRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEA 743
            RRAWDKG GP+R GEGPSARSVWQASKDEATLEAIRVAGED+G SR+ARVAIPE+TAEA
Sbjct: 704 SRRAWDKGAGPLRFGEGPSARSVWQASKDEATLEAIRVAGEDNGLSRTARVAIPEMTAEA 763

Query: 744 MGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLS 803
           MGDDN G ERDPIWTSWTNAMDA+++GD+DTAYAEVVSTGDDFLLVKLMDRSGPV+DQLS
Sbjct: 764 MGDDNGGPERDPIWTSWTNAMDALKMGDMDTAYAEVVSTGDDFLLVKLMDRSGPVIDQLS 823

Query: 804 NEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEA 863
           NE A EVLHAI QFLLEQNLFDICLSWI QLVE+VLENGP VLGIPMELKKELLLNLHEA
Sbjct: 824 NETACEVLHAIVQFLLEQNLFDICLSWIHQLVEIVLENGPDVLGIPMELKKELLLNLHEA 883

Query: 864 STTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 898
           ST +DPPEDWEG APDQLL+QLASAW IELQQFDK
Sbjct: 884 STAIDPPEDWEGAAPDQLLMQLASAWRIELQQFDK 918

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519460|ref|XP_004166753.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus]

 Score = 1176 bits (3042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/941 (65%), Positives = 732/941 (77%), Gaps = 61/941 (6%)

Query: 1   MSSQPNKFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           MSSQ  K ++P+KP +Q   S   + S +SSLSSHLAMVE+KQ+ILT+LSKLADRDTHQI
Sbjct: 1   MSSQAPKSSRPSKPPNQ---SPPTSRSSASSLSSHLAMVELKQRILTALSKLADRDTHQI 57

Query: 61  AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
           AI+DLEK IQ++S E++PMLLNCLY+SS DPKPAVKKES+RLL +VC  HS+ TSTH+TK
Sbjct: 58  AIDDLEKIIQSISPEAIPMLLNCLYDSSADPKPAVKKESLRLLTVVCASHSDSTSTHLTK 117

Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT------VVGLFVKPLFEAM 174
           II+HI++R+KDSDSG+K++CRD+IG+LS  YL G     G       VV LFVKPLFEAM
Sbjct: 118 IIAHIIRRVKDSDSGVKDSCRDAIGALSAQYLKGDSSGGGDNGGLGSVVALFVKPLFEAM 177

Query: 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234
            EQNKGVQSGAA+CMAKMVECA+ PP++AFQKLC RICKLL+N NF+AKASLLPVV +LS
Sbjct: 178 GEQNKGVQSGAALCMAKMVECAASPPIMAFQKLCPRICKLLNNPNFLAKASLLPVVSNLS 237

Query: 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294
           QVGAI  QSLE LL SIHE LGSTDWATRKAAADALSALALHSSN + DG  ST  VLEA
Sbjct: 238 QVGAIGQQSLENLLPSIHELLGSTDWATRKAAADALSALALHSSNFITDGGASTFAVLEA 297

Query: 295 CRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKR 354
           CRFDKIKPVRDSM EALQLWKK+AGK D  ++ Q +S    G++ EP E       S K 
Sbjct: 298 CRFDKIKPVRDSMTEALQLWKKLAGKTDGAAESQNASQ--DGESHEPAE------LSQKS 349

Query: 355 AELSAKGPLNGSS----------PASASLTKGKAGNISEKAVVILKKKAPALSDKELNPE 404
              +A  P  G S          P   S  K K G+IS+KA VILKKK PAL+DKELNPE
Sbjct: 350 DMTTANSPQGGRSLDKDKSEEPIPVLNSALKTKCGSISDKAAVILKKKVPALTDKELNPE 409

Query: 405 FFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVS 463
           FFQ L +RGSGDLPVEVV+PRR  NSSN+N +E+S+P +  + GRS R+ N+ TDDF  +
Sbjct: 410 FFQKLETRGSGDLPVEVVLPRRHANSSNTN-DEKSEPDNSTAGGRSTRVENTNTDDFQRA 468

Query: 464 LNNKHRSIDRGTAGG-----------------NGKDPRMRAPDV-------ERELSGNRA 499
            N K R  +R                      NG+D R RA +V       +RE SG R+
Sbjct: 469 FN-KFRDSERAQMAKMRDYDDLERDKWHEGKINGRDSRTRAYNVNDQNDVSQRESSGARS 527

Query: 500 GFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVR 559
            FSK D+Q+E SFIN+KG+W AIQRQL+QLERQQAHLMNMLQDFMGGSHDSM+TLENRVR
Sbjct: 528 DFSKMDAQSESSFINSKGSWSAIQRQLLQLERQQAHLMNMLQDFMGGSHDSMITLENRVR 587

Query: 560 GLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKY----NGRTPF 615
           GLERVVEDMARDLS+SSGRRG NF +GFEGS+NR LGKY+GF++Y   K+    +GR PF
Sbjct: 588 GLERVVEDMARDLSVSSGRRG-NFPLGFEGSSNRHLGKYSGFSDYPVAKFGRNNDGRVPF 646

Query: 616 GERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKS 675
           GERF QS+G+ A+ RGR  +WR DM++ WD+ AY  SRNGQ+GS+R+     +D+RS KS
Sbjct: 647 GERFVQSEGIGANMRGRSAAWRPDMNETWDYPAYM-SRNGQMGSKRSLDAS-IDNRSSKS 704

Query: 676 EHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVA 735
           E ++DQ G RRAWDKG GP+RLGEGPSARSVWQASKDEATLEAIRVAGED+G SR+ +VA
Sbjct: 705 EQESDQGGNRRAWDKGAGPLRLGEGPSARSVWQASKDEATLEAIRVAGEDNGISRTPKVA 764

Query: 736 IPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRS 795
           IPELTAEA+ +DN GQERDP+WTSWTNAMDA+Q GD+D AYAEV+STGDD LL+KLM+R+
Sbjct: 765 IPELTAEALVEDNAGQERDPVWTSWTNAMDALQAGDMDMAYAEVLSTGDDILLIKLMERT 824

Query: 796 GPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKE 855
           GP VDQ+SNE+  E+  A+GQFLLEQNLFDICL WIQQLVE+VL+NGP  +GIPME+KKE
Sbjct: 825 GPAVDQISNEIVIEIFRAVGQFLLEQNLFDICLFWIQQLVEIVLDNGPDCVGIPMEVKKE 884

Query: 856 LLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQF 896
           LLLN HEAS+TMDPPEDWEG  PDQLL QLASAW I++ Q 
Sbjct: 885 LLLNFHEASSTMDPPEDWEGALPDQLLSQLASAWRIDIGQL 925

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569846|ref|XP_003553106.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Glycine max]

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/908 (67%), Positives = 713/908 (78%), Gaps = 54/908 (5%)

Query: 35  HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPA 94
           HLAMVE+KQKILTSLSKL+DRDTHQIA+EDLEKTI  LS +++PM+LNCLY+++ DPKPA
Sbjct: 26  HLAMVELKQKILTSLSKLSDRDTHQIAVEDLEKTISGLSPDAIPMILNCLYDAATDPKPA 85

Query: 95  VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154
           VK++++RLLA VC  HS+  + H+TKII+H+V+RLKD+DS +++ACRD++G+L+  YL G
Sbjct: 86  VKRDALRLLAAVCGAHSDAAAAHLTKIIAHVVRRLKDADSAVRDACRDTVGALAAQYLKG 145

Query: 155 KEENNGTVVG----LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-----PVVAFQ 205
                G  VG    LFVKPLFEAM EQNKGVQ+GAA+CMAKMVECA        PV AFQ
Sbjct: 146 DGGGGGGGVGTVVGLFVKPLFEAMGEQNKGVQAGAAVCMAKMVECAGGSGGEAVPVAAFQ 205

Query: 206 KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKA 265
           KLC RI KLL++ NFMAKA++LPVV SLSQVGAIAPQSLE LL SIHECL STDWATRKA
Sbjct: 206 KLCPRIYKLLNSPNFMAKAAILPVVASLSQVGAIAPQSLEHLLPSIHECLSSTDWATRKA 265

Query: 266 AADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS 325
           AA+ALS+LALHSS+LV D A  TL VLEACRFDKIKPVRDS+NEALQLWKKIAGK D   
Sbjct: 266 AAEALSSLALHSSSLVTDRAAPTLAVLEACRFDKIKPVRDSINEALQLWKKIAGKGDGSP 325

Query: 326 DDQKSSPVPGGKAPEPGE--DLKNLNPSDKRAELSAKGPLNGSSPASASL--TKGKAGNI 381
           DD K S   G ++    E  D K +N  +++ +     P+ GSS +S+++  TK KA +I
Sbjct: 326 DDSKPSSDGGNESAISSEASDPKKVNLDERKTD----SPVKGSSTSSSNMDSTKAKAASI 381

Query: 382 SEKAVVILKKKAPALSDKELNPEFFQNLSR-GSGDLPVEVVVPRRCLNSSNSNNEEESDP 440
           SEKAVVILKKK P LSDKELNPEFFQ L R GS DLPVEVVVPRR LNSSNSNNEEES+ 
Sbjct: 382 SEKAVVILKKKPPVLSDKELNPEFFQKLERRGSDDLPVEVVVPRRGLNSSNSNNEEESEA 441

Query: 441 SDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGG-------------------NGK 481
           +  DSK R N +GN   DD   S +NK+R  +RG  G                    N K
Sbjct: 442 NAKDSKERINSVGNIPNDDHGSS-SNKYRIFERGNDGNSKQRNYDDFGHDRFSERRVNTK 500

Query: 482 DPRMRAPDV-------ERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQA 534
           + R +A D        +R+ S N AGFSKTD Q+E  F NN+ NWLAIQRQL+QLERQQ 
Sbjct: 501 ELRTKAYDTDGRTENDQRDGSANAAGFSKTDGQSEVPFSNNRANWLAIQRQLLQLERQQV 560

Query: 535 HLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRS 594
           HLMNMLQDFMGGSHDSMVTLENRVRGLER+VEDM+RDLSISSGRR  NFA GFEGS+NR 
Sbjct: 561 HLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSISSGRR--NFA-GFEGSSNRP 617

Query: 595 LGKYNGFAEYSGTKY----NGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYC 650
             KYNGF +YS +KY    +GR PFGERFAQSDG +   RGRGPSWRSDMS+ WD + Y 
Sbjct: 618 SSKYNGFNDYSSSKYGRGGDGRIPFGERFAQSDGNSLGMRGRGPSWRSDMSEGWDHSGYG 677

Query: 651 ASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSARSVWQAS 710
           ASRNGQ+ SRRA GG   D RSPKS H+NDQ G RRAWDK   P+RLGEGPSARSVWQAS
Sbjct: 678 ASRNGQMSSRRAFGGSSADGRSPKSVHENDQAGNRRAWDKAAMPIRLGEGPSARSVWQAS 737

Query: 711 KDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNAMDAIQVG 770
           KDEATLEAIRVAGED+GTSR+ RVAIPE+TAEAM DDNVGQERD IWTSW+NAMDA+QVG
Sbjct: 738 KDEATLEAIRVAGEDNGTSRATRVAIPEMTAEAMADDNVGQERDAIWTSWSNAMDALQVG 797

Query: 771 DLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSW 830
           DLD+A+AEV+S GDD LLVKLMD++GPV+DQLS+EVA E ++AIGQFLL+QN++DICLSW
Sbjct: 798 DLDSAFAEVLSAGDDILLVKLMDKTGPVIDQLSSEVACETVNAIGQFLLDQNMYDICLSW 857

Query: 831 IQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWE 890
           IQQL+E+VLENGP    IPME+KKELLLNLHEAST  DP E WEG  PDQLLLQLASAWE
Sbjct: 858 IQQLLEIVLENGPDTFDIPMEVKKELLLNLHEAST--DPAETWEGVQPDQLLLQLASAWE 915

Query: 891 IELQQFDK 898
           I+LQQ DK
Sbjct: 916 IDLQQHDK 923

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459403|ref|XP_003599982.1| Microtubule-associated protein TORTIFOLIA1 [Medicago truncatula] gi|355489030|gb|AES70233.1| Microtubule-associated protein TORTIFOLIA1 [Medicago truncatula]

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/915 (63%), Positives = 692/915 (75%), Gaps = 63/915 (6%)

Query: 35  HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPA 94
           HLAMVE+KQKILTSLSKL+DRDTHQIA+EDLEKTI +L+ +++PM+LNCLYE+ +DPKP+
Sbjct: 22  HLAMVELKQKILTSLSKLSDRDTHQIALEDLEKTILSLTPDAIPMILNCLYEAVSDPKPS 81

Query: 95  VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154
           +K ES+RLL+ VC  H   TS H+ KIISHIVKRLKD+DS  ++ACRDSIGS++ LYL G
Sbjct: 82  IKNESLRLLSFVCSSHPHSTSPHLPKIISHIVKRLKDTDSASRDACRDSIGSIAALYLRG 141

Query: 155 KEENNGT------VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC---------ASDP 199
           +   N        +VGLFVKPLFEAM EQNK VQ GAA+CMAKMVE          A+  
Sbjct: 142 ENNGNNGSNGNGSLVGLFVKPLFEAMGEQNKAVQGGAAICMAKMVEMTAAVEEGGGAAVV 201

Query: 200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTD 259
           PV AFQK+C RICKL++N NF+AKA++LPVV +LSQ GAIAPQSL+ LL SIH+CL S+D
Sbjct: 202 PVGAFQKMCPRICKLINNPNFLAKAAILPVVSALSQAGAIAPQSLDNLLSSIHDCLSSSD 261

Query: 260 WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG 319
           WATRKAAA+ALS+LALHSS+L+ D  T T+T+LEACR DKI+PVRDSM EAL LWKKIAG
Sbjct: 262 WATRKAAAEALSSLALHSSSLITDKTTPTVTLLEACRVDKIRPVRDSMTEALDLWKKIAG 321

Query: 320 KVDVGSDDQKSSPVPGGKAPEPG-----EDLKNLNPSDKRAELSAKGPLNGSSPASASLT 374
           K D  S D K     GG  PEP       DLKN+NP +++ + S K  L  SS  + S +
Sbjct: 322 K-DGSSHDSKPLSSDGGN-PEPAVLTETSDLKNVNPDERKTDPSVKD-LPTSSSNTDSNS 378

Query: 375 KGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGS-GDLPVEVVVPRRCLNSSNSN 433
           K KA +ISEKAVVILKKK P L+DK LNPEFFQNL R    DLPVEVVVPR+CLNSS+SN
Sbjct: 379 KAKAASISEKAVVILKKKPPVLNDKVLNPEFFQNLERRDLDDLPVEVVVPRKCLNSSSSN 438

Query: 434 NEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGG--------------- 478
           N+EES  +  DS  R+N  GN   D F  S+NNK+  ++RG  G                
Sbjct: 439 NDEESKATAKDSNERTNATGNVPNDGFHGSVNNKYHGLERGNDGNSRQRNYEDFAQDRYY 498

Query: 479 ----NGKDPRMRAPDV-------ERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLM 527
               N K+ R +  D        +R+ S N AGFS+ D Q+E  F NN+GN LAIQRQL 
Sbjct: 499 ERRMNAKELRTKTNDTIDRSENDQRDGSANIAGFSRADGQSEVPFSNNRGNLLAIQRQLT 558

Query: 528 QLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGF 587
           QLERQQ HLMNMLQDFMGGSHDSMVTLENRVRGLER+VEDM +DLSISSGRR       F
Sbjct: 559 QLERQQGHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMLQDLSISSGRR-------F 611

Query: 588 EGSNNRSLGKYNGFAEYSGTKY----NGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDA 643
           EGS+ R   KYNGF EYS +KY    +GR PF ERF Q+DG A   RGRGPSWRSDM + 
Sbjct: 612 EGSSGRPSSKYNGFNEYSNSKYGRGGDGRIPFNERFTQTDGNALGMRGRGPSWRSDMPEG 671

Query: 644 WDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDNDQVGGRRAWDKGTGPVRLGEGPSA 703
           WDF  Y ASRNGQ+ SRRA GG  VD RSPKS H++DQ G RRAW+K   P+RLGEGPSA
Sbjct: 672 WDFPGYGASRNGQISSRRAFGGSSVDGRSPKSVHESDQGGSRRAWEKAAMPIRLGEGPSA 731

Query: 704 RSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPELTAEAMGDDNVGQERDPIWTSWTNA 763
           RSVWQASKDEATLEAIRVAGED+GTSR+ RVA+PE+TAEAM DD+VGQERD IWTSW+NA
Sbjct: 732 RSVWQASKDEATLEAIRVAGEDNGTSRATRVAVPEMTAEAMADDSVGQERDAIWTSWSNA 791

Query: 764 MDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNL 823
            DA+Q GD+D+A+AEV+STGDD LLVKLMDR+GPV+++LS+E+A E+L+AI QFLLEQ+L
Sbjct: 792 FDALQAGDIDSAFAEVLSTGDDRLLVKLMDRTGPVINELSSEIACEILYAISQFLLEQDL 851

Query: 824 FDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLL 883
           F+ICLSWIQQLVE++ ENGP   G+PME+K++LL NLH+AST  D  E WEG  PDQLLL
Sbjct: 852 FNICLSWIQQLVEVLFENGPDTFGVPMEVKEDLLRNLHDAST--DTAEGWEGVPPDQLLL 909

Query: 884 QLASAWEIELQQFDK 898
           QLAS WEI+LQQ DK
Sbjct: 910 QLASGWEIDLQQHDK 924

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28200788|emb|CAD45375.1| potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigenum]

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/879 (64%), Positives = 666/879 (75%), Gaps = 65/879 (7%)

Query: 34  SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKP 93
           +H AM+E+KQ+ILTS+SKL+DRDTHQIA+EDLEK IQTLS + + MLLNCLY++SNDPKP
Sbjct: 35  THFAMIELKQRILTSISKLSDRDTHQIAVEDLEKIIQTLSNDGVSMLLNCLYDASNDPKP 94

Query: 94  AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN 153
           AVKKE++RLL  VC  H +  +TH+TKII +IVKRLKDSDSG+++ACRD+IGSLS LYL 
Sbjct: 95  AVKKETLRLLPTVCASHGDSAATHLTKIIGNIVKRLKDSDSGVRDACRDAIGSLSSLYLK 154

Query: 154 GKEENNG--TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211
           G+ E+ G  +VV LFVKPLFEAM E +K VQSGAA+CMAK+VECASDPPV++FQKLC RI
Sbjct: 155 GEAESGGIGSVVALFVKPLFEAMNENSKTVQSGAALCMAKVVECASDPPVLSFQKLCPRI 214

Query: 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALS 271
           CK L+N +F+AKASLLPVV SLSQVGAIAPQ+LEPLLQ+IHECL +TDWATRKAAAD LS
Sbjct: 215 CKYLNNPHFVAKASLLPVVSSLSQVGAIAPQNLEPLLQTIHECLSNTDWATRKAAADTLS 274

Query: 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSS 331
           ALAL+SSNLV  GATSTLTVLEA RFDKIKPVRDSM EALQ WKKIAGK D  +DDQK+S
Sbjct: 275 ALALNSSNLVAGGATSTLTVLEASRFDKIKPVRDSMLEALQHWKKIAGKEDGATDDQKTS 334

Query: 332 PVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKK 391
            + G  +   G   K+L                                    AV ILKK
Sbjct: 335 CIDGESSESAGSSEKDL----------------------------------RNAVGILKK 360

Query: 392 KAPALSDKELNPEFFQNL-SRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRS- 449
           + PALSD++LNPEFFQ L  R S DLPVEVVVPR+CLN+SN+  E ES     ++  R+ 
Sbjct: 361 RGPALSDRKLNPEFFQKLEERSSNDLPVEVVVPRQCLNASNTPTEVESVSEKAETGQRTM 420

Query: 450 ------NRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSK 503
                  R  N+++    VS   +H ++D G                +RE S  R GF+K
Sbjct: 421 RKSQIDTRYSNTESQTSGVS-GREHDTVDEGDLN-------------QREQSSYRTGFAK 466

Query: 504 TDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLER 563
                EG F+ NKGNWLAIQRQL+ LERQQAHL NMLQDFMGGSH SMV LENRVRGLER
Sbjct: 467 NAGPPEG-FMANKGNWLAIQRQLLLLERQQAHLTNMLQDFMGGSHGSMVALENRVRGLER 525

Query: 564 VVEDMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKY----NGRTPFGERF 619
           VVEDMA DLS+S+GRRG  F   F+ S NR+LGKYN F +YS TK      G  PFGERF
Sbjct: 526 VVEDMAHDLSLSAGRRGGAFTARFDESLNRALGKYNSFHDYSSTKLGRGSEGSIPFGERF 585

Query: 620 AQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSEHDN 679
             SDG ++  RGR P  RSD  DAWDF +Y   + GQ GSRR  GGGP+D+RS K E++ 
Sbjct: 586 VPSDGNSSGVRGRSPPRRSDNPDAWDFHSY--GKYGQSGSRRGIGGGPMDARSSKLENEI 643

Query: 680 DQVGGRRAWDKGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAIPEL 739
           DQVG RR W KGTGPVR GEGPSARS+WQASKDEATLEAIRVAG+D+GT+R  RVAIPEL
Sbjct: 644 DQVGTRRGWAKGTGPVRFGEGPSARSIWQASKDEATLEAIRVAGDDNGTARGTRVAIPEL 703

Query: 740 TAEAMGDDNVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVV 799
            AEA+ DDN  QERDP+WTSWTNAMDA  VGD+D+A++EV+STGDDFLLVKLMDRSGPV+
Sbjct: 704 EAEALTDDNNMQERDPVWTSWTNAMDAFSVGDMDSAFSEVLSTGDDFLLVKLMDRSGPVI 763

Query: 800 DQLSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLN 859
           DQLSNEVA+E LHA+ QFLLE NL DICLSW+QQL+E+V+ENGP V+ +PME+KKELLLN
Sbjct: 764 DQLSNEVASEALHAVAQFLLEPNLTDICLSWVQQLLEIVIENGPEVVDLPMEVKKELLLN 823

Query: 860 LHEASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 898
           L+E S+++D PEDWEG  P+QLLLQLASAW+I+LQ+ +K
Sbjct: 824 LNEISSSVDLPEDWEGATPEQLLLQLASAWDIDLQELEK 862

Source: Solanum tuberosum subsp. andigenum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567178|ref|NP_194436.2| Microtubule-associated protein TORTIFOLIA1 [Arabidopsis thaliana] gi|83288274|sp|Q9T041.2|MAPT_ARATH RecName: Full=Microtubule-associated protein TORTIFOLIA1; AltName: Full=Microtubule-associated protein SPIRAL2; AltName: Full=Protein CONVOLUTA gi|51870567|emb|CAC80696.2| TORTIFOLIA1 microtubule-associated protein [Arabidopsis thaliana] gi|53791209|dbj|BAD54701.1| microtubule associated protein SPIRAL2 [Arabidopsis thaliana] gi|332659895|gb|AEE85295.1| Microtubule-associated protein TORTIFOLIA1 [Arabidopsis thaliana]

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/914 (61%), Positives = 668/914 (73%), Gaps = 69/914 (7%)

Query: 3   SQPNKFTKPAKPTSQGQQSSSA--NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQI 60
           S P      AKPT   + SS A  + S S SL+S  AMVE+KQKILTS+SKLADRDT+QI
Sbjct: 2   STPTTSGSAAKPTRPARSSSLATRSCSNSGSLTSFQAMVELKQKILTSISKLADRDTYQI 61

Query: 61  AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120
           A+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TK
Sbjct: 62  AVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTK 121

Query: 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMM 175
           II+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE   T      VGLFVKPLFEAM 
Sbjct: 122 IIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMG 181

Query: 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235
           EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQ
Sbjct: 182 EQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQ 241

Query: 236 VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295
           VGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ +   ST+TVLE C
Sbjct: 242 VGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETC 301

Query: 296 RFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKR 354
           RFDKIKPVR+S+ EALQLWKKI+GK VD  SDD K S      + + GE   NL      
Sbjct: 302 RFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ 355

Query: 355 AELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSG 414
           A+L  K   +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R   
Sbjct: 356 ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS 414

Query: 415 DLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRG 474
              VEVVVPRRC N    N+EEES   DL++ G SNR+ N+Q DD  V          +G
Sbjct: 415 ---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KG 457

Query: 475 TAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQL 529
              GNG   R    D       +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QL
Sbjct: 458 RFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQL 517

Query: 530 ERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEG 589
           ERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N   GF  
Sbjct: 518 ERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF-- 574

Query: 590 SNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAY 649
                 GKYN FA Y   KYNGR P GER +Q+DG       RG  W SDM+D W    +
Sbjct: 575 ------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPH 622

Query: 650 CASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSV 706
            ASRNGQ G RR          SP+SE ++N+ +G GRR WD K +G +R GEGPSARSV
Sbjct: 623 AASRNGQAGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSV 672

Query: 707 WQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAM 764
           WQASKDEATLEAIRVAGED    R  RVA+ PE  AEAMGDD N GQERDPIW SW+NAM
Sbjct: 673 WQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAM 730

Query: 765 DAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLF 824
            +++VGD+D AYAEV+  GD  L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+
Sbjct: 731 HSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLY 790

Query: 825 DICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQ 884
           DICLSW QQL+ELVL++G    G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++Q
Sbjct: 791 DICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQ 850

Query: 885 LASAWEIELQQFDK 898
           LAS WEI+LQQFDK
Sbjct: 851 LASVWEIDLQQFDK 864

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4490702|emb|CAB38836.1| hypothetical protein [Arabidopsis thaliana] gi|7269559|emb|CAB79561.1| hypothetical protein [Arabidopsis thaliana]

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/877 (62%), Positives = 650/877 (74%), Gaps = 67/877 (7%)

Query: 38  MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKK 97
           MVE+KQKILTS+SKLADRDT+QIA+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVKK
Sbjct: 1   MVELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKK 60

Query: 98  ESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE 157
           E + LL+ VC LH + T+ H+TKII+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKEE
Sbjct: 61  ECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEE 120

Query: 158 NNGT-----VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC 212
              T      VGLFVKPLFEAM EQNK VQSGA+MCMA+MVE A+ PPV +FQKLC RIC
Sbjct: 121 GTNTGSASLAVGLFVKPLFEAMGEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRIC 180

Query: 213 KLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272
           KLLSN +F+AKASLLPVV SLSQVGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+A
Sbjct: 181 KLLSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTA 240

Query: 273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKSS 331
           LA HSS L+ +   ST+TVLE CRFDKIKPVR+S+ EALQLWKKI+GK VD  SDD K S
Sbjct: 241 LASHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLS 300

Query: 332 PVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVILKK 391
                 + + GE   NL      A+L  K   +GS+ +  S +KGK G   EKAV +LKK
Sbjct: 301 ASEQLGSEKNGEKRSNL------ADLMKKEASDGSTLSPDSASKGK-GCFPEKAVGLLKK 353

Query: 392 KAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNR 451
           KAP LSDK+ NPEFFQ L R      VEVVVPRRC N    N+EEES   DL++ G SNR
Sbjct: 354 KAPVLSDKDFNPEFFQRLERRQS---VEVVVPRRCKN----NDEEESGLDDLNAMGSSNR 406

Query: 452 MGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVE-----RELSGNRAGFSKTDS 506
           + N+Q DD  V          +G   GNG   R    D       +E  G+ A  S TD+
Sbjct: 407 LKNTQADDKQV----------KGRFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDN 456

Query: 507 QAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVE 566
           Q+EGSF +N+GNW AIQRQL+QLERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VE
Sbjct: 457 QSEGSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVE 516

Query: 567 DMARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVA 626
           DMARDLSISSGRR +N   GF        GKYN FA Y   KYNGR P GER +Q+DG  
Sbjct: 517 DMARDLSISSGRR-ANLTAGF--------GKYNSFANYPTGKYNGRAP-GERGSQTDGAM 566

Query: 627 ASTRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-G 684
                RG  W SDM+D W    + ASRNGQ G RR          SP+SE ++N+ +G G
Sbjct: 567 -----RGRMWNSDMADDWFIPPHAASRNGQAGPRR----------SPRSEQYENEHMGNG 611

Query: 685 RRAWD-KGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAE 742
           RR WD K +G +R GEGPSARSVWQASKDEATLEAIRVAGED    R  RVA+ PE  AE
Sbjct: 612 RRGWDNKASGTIRFGEGPSARSVWQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AE 669

Query: 743 AMGDD-NVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQ 801
           AMGDD N GQERDPIW SW+NAM +++VGD+D AYAEV+  GD  L++KLMD++GP +DQ
Sbjct: 670 AMGDDDNEGQERDPIWVSWSNAMHSLRVGDIDAAYAEVLCAGDQHLVIKLMDKTGPSLDQ 729

Query: 802 LSNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLH 861
           +SNE+ANE L+ I QFLL+ +L+DICLSW QQL+ELVL++G    G+PMELK E+L NL 
Sbjct: 730 MSNEIANEALNFISQFLLDHSLYDICLSWSQQLLELVLQDGADTFGVPMELKTEILYNLQ 789

Query: 862 EASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 898
           +A +TMDPPEDWEGPAP+QL++QLAS WEI+LQQFDK
Sbjct: 790 DACSTMDPPEDWEGPAPEQLVVQLASVWEIDLQQFDK 826

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799280|ref|XP_002867524.1| hypothetical protein ARALYDRAFT_913839 [Arabidopsis lyrata subsp. lyrata] gi|297313360|gb|EFH43783.1| hypothetical protein ARALYDRAFT_913839 [Arabidopsis lyrata subsp. lyrata]

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/876 (61%), Positives = 648/876 (73%), Gaps = 63/876 (7%)

Query: 37  AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVK 96
           AMVE+KQKILTS+SKLADRDT+QIA+EDLEKTIQ+L+ E+LPM LNCLY+S +DPKPAVK
Sbjct: 38  AMVELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVK 97

Query: 97  KESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
           KE + LL+ VC LH + T+ H+TKII+ IVKRLKDSDSG+++ACRD+IG+LS +YL GKE
Sbjct: 98  KECLHLLSCVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKE 157

Query: 157 ENNGT-----VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211
           E   T      VGLFVKPLFEAM EQNK VQSGAAMCMA+MVE A+ PP+ +FQKLC +I
Sbjct: 158 EGTNTGSASLAVGLFVKPLFEAMGEQNKVVQSGAAMCMARMVESAASPPITSFQKLCPKI 217

Query: 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALS 271
           CKLLSN +F+AKASLLPVV SLSQVGAIAPQSLE LL+SIH+CLGSTDW TRKAAA+ L+
Sbjct: 218 CKLLSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLT 277

Query: 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK-VDVGSDDQKS 330
           ALA HSS L+ +   ST+TVLE  RFDKIKPVR+S+ EALQLWKKI+GK VD  +D+ K 
Sbjct: 278 ALASHSSGLIKEKTDSTITVLETWRFDKIKPVRESVTEALQLWKKISGKYVDGATDESKL 337

Query: 331 SPVPGGKAPEPGEDLKNLNPSDKR---AELSAKGPLNGSSPASASLTKGKAGNISEKAVV 387
           S          GE L +   ++KR   A+L      +GS+ +  S  KGK G + EKAV 
Sbjct: 338 SS---------GEQLGSEKNAEKRSNLADLMKNEASDGSTLSPDSAFKGK-GCLPEKAVG 387

Query: 388 ILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKG 447
           +LKKKAP LSDK+ NPEFFQ L R      VEVVVPRRC N    N EEES   DL++ G
Sbjct: 388 LLKKKAPVLSDKDFNPEFFQRLERRQS---VEVVVPRRCKN----NYEEESGLDDLNAMG 440

Query: 448 RSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFSKTDSQ 507
            SN   N+Q DD  V    K R    G+  G   D +    +  +E  GN A  S TD+Q
Sbjct: 441 SSNHFKNTQADDKQV----KGRFDGNGSQAGTSVDDKAGVVN-GKEAPGNHAPVSNTDNQ 495

Query: 508 AEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVED 567
           +EGSF +N+GNW AIQRQL+QLERQQ +LMNMLQ+F+GGSHDSMVTLE RVRGLER+VED
Sbjct: 496 SEGSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVED 555

Query: 568 MARDLSISSGRRGSNFAMGFEGSNNRSLGKYNGFAEYSGTKYNGRTPFGERFAQSDGVAA 627
           MARDLSISSGRRG N   GF        GKYN FA Y   KYNGR P G+R +Q DG   
Sbjct: 556 MARDLSISSGRRG-NLTAGF--------GKYNSFANYPTGKYNGRAP-GDRGSQPDGAM- 604

Query: 628 STRGRGPSWRSDMSDAWDFTAYCASRNGQLGSRRAPGGGPVDSRSPKSE-HDNDQVG-GR 685
               RG  W SDM+D W    + ASRNGQ G RR          SP+SE ++N+ +G GR
Sbjct: 605 ----RGRMWNSDMADDWFIPPHAASRNGQAGPRR----------SPRSEQYENEHMGNGR 650

Query: 686 RAWD-KGTGPVRLGEGPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVAI-PELTAEA 743
           R WD K +G +R GEGPSARSVWQASKDEATLEAIRVAGED    R  RVA+ PE  AEA
Sbjct: 651 RGWDNKASGTIRFGEGPSARSVWQASKDEATLEAIRVAGEDGAVPRPTRVAVAPE--AEA 708

Query: 744 MGDD-NVGQERDPIWTSWTNAMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQL 802
           MGDD N GQERDPIW SW+NAM +++VGD+D AYAEV+  GD  L++KLMDR+GP +DQ+
Sbjct: 709 MGDDENEGQERDPIWASWSNAMHSLRVGDIDAAYAEVLCAGDQHLIIKLMDRTGPSLDQM 768

Query: 803 SNEVANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKELLLNLHE 862
           SNE+ANE L+ I QFLL+ NL+DICLSW QQL+ELVL++G    G+P+ELK E+L NL +
Sbjct: 769 SNEIANEALNFIAQFLLDHNLYDICLSWSQQLLELVLQDGADTFGVPVELKTEILYNLQD 828

Query: 863 ASTTMDPPEDWEGPAPDQLLLQLASAWEIELQQFDK 898
           A +TMDPPEDWEGPAP+QL++QLAS WEI+LQQFDK
Sbjct: 829 ACSTMDPPEDWEGPAPEQLVVQLASVWEIDLQQFDK 864

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110736009|dbj|BAE99978.1| hypothetical protein [Arabidopsis thaliana]

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/847 (61%), Positives = 620/847 (73%), Gaps = 67/847 (7%)

Query: 68  TIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127
           TIQ+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TKII+ IVK
Sbjct: 1   TIQSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVK 60

Query: 128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT-----VVGLFVKPLFEAMMEQNKGVQ 182
           RLKDSDSG+++ACRD+IG+LS +YL GKEE   T      VGLFVKPLFEAM EQNK VQ
Sbjct: 61  RLKDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMGEQNKVVQ 120

Query: 183 SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQ 242
           SGA+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQVGAIAPQ
Sbjct: 121 SGASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQVGAIAPQ 180

Query: 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP 302
           SLE LL+SIH+CLGSTDW TRKAAA+ L+ALA HSS L+ +   ST+TVLE CRFDKIKP
Sbjct: 181 SLESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETCRFDKIKP 240

Query: 303 VRDSMNEALQLWKKIAGK-VDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKG 361
           VR+S+ EALQLWKKI+GK VD  SDD K S      + + GE   NL      A+L  K 
Sbjct: 241 VRESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ADLMKKE 294

Query: 362 PLNGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVV 421
             +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R      VEVV
Sbjct: 295 ASDGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS---VEVV 350

Query: 422 VPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGGNGK 481
           VPRRC N    N+EEES   DL++ G SNR+ N+Q DD  V          +G   GNG 
Sbjct: 351 VPRRCKN----NDEEESGLDDLNAMGSSNRLKNTQADDKQV----------KGRFDGNGS 396

Query: 482 DPRMRAPDVE-----RELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHL 536
             R    D       +E  G+ A  S TD+Q+EGSF +N+GNW AIQRQL+QLERQQ +L
Sbjct: 397 QARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSNRGNWSAIQRQLLQLERQQTNL 456

Query: 537 MNMLQDFMGGSHDSMVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGSNNRSLG 596
           MNMLQ+F+GGSHDSMVTLE RVRGLER+VEDMARDLSISSGRR +N   GF        G
Sbjct: 457 MNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRR-ANLTAGF--------G 507

Query: 597 KYNGFAEYSGTKYNGRTPFGERFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASRNGQ 656
           KYN FA Y   KYNGR P GER +Q+DG       RG  W SDM+D W    + ASRNGQ
Sbjct: 508 KYNSFANYPTGKYNGRAP-GERGSQTDGAM-----RGRMWNSDMADDWFIPPHAASRNGQ 561

Query: 657 LGSRRAPGGGPVDSRSPKSE-HDNDQVG-GRRAWD-KGTGPVRLGEGPSARSVWQASKDE 713
            G RR          SP+SE ++N+ +G GRR WD K +G +R GEGPSARSVWQASKDE
Sbjct: 562 AGPRR----------SPRSEQYENEHMGNGRRGWDNKASGTIRFGEGPSARSVWQASKDE 611

Query: 714 ATLEAIRVAGEDSGTSRSARVAI-PELTAEAMGDD-NVGQERDPIWTSWTNAMDAIQVGD 771
           ATLEAIRVAGED    R  RVA+ PE  AEAMGDD N GQERDPIW SW+NAM +++VGD
Sbjct: 612 ATLEAIRVAGEDGAVPRPTRVAVAPE--AEAMGDDDNEGQERDPIWVSWSNAMHSLRVGD 669

Query: 772 LDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVANEVLHAIGQFLLEQNLFDICLSWI 831
           +D AYAEV+  GD  L++KLMD++GP +DQ+SNE+ANE L+ I QFLL+ +L+DICLSW 
Sbjct: 670 IDAAYAEVLCAGDQHLVIKLMDKTGPSLDQMSNEIANEALNFISQFLLDHSLYDICLSWS 729

Query: 832 QQLVELVLENGPHVLGIPMELKKELLLNLHEASTTMDPPEDWEGPAPDQLLLQLASAWEI 891
           QQL+ELVL++G    G+PMELK E+L NL +A +TMDPPEDWEGPAP+QL++QLAS WEI
Sbjct: 730 QQLLELVLQDGADTFGVPMELKTEILYNLQDACSTMDPPEDWEGPAPEQLVVQLASVWEI 789

Query: 892 ELQQFDK 898
           +LQQFDK
Sbjct: 790 DLQQFDK 796

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	898
TAIR|locus:2136467	864	TOR1 "TORTIFOLIA 1" [Arabidops	0.858	0.892	0.422	1.9e-129
TAIR|locus:2036411	821	AT1G50890 "AT1G50890" [Arabido	0.716	0.783	0.413	6.8e-111
TAIR|locus:2060161	820	AT2G07170 [Arabidopsis thalian	0.397	0.435	0.347	2.1e-71
TAIR|locus:2025906	498	AT1G59850 "AT1G59850" [Arabido	0.383	0.690	0.288	7.8e-50
TAIR|locus:2205739	625	AT1G27210 [Arabidopsis thalian	0.320	0.460	0.322	7.1e-47
TAIR|locus:2154144	615	AT5G62580 [Arabidopsis thalian	0.410	0.6	0.272	4.7e-38
TAIR|locus:504956282	560	AT1G54385 [Arabidopsis thalian	0.301	0.483	0.21	2.1e-05

TAIR|locus:2136467 TOR1 "TORTIFOLIA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
 Identities = 357/845 (42%), Positives = 462/845 (54%)

Query:    10 KPAKPTXXXXXXXXXXXXXXXXXXXHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTI 69
             KP +P                      AMVE+KQKILTS+SKLADRDT+QIA+EDLEKTI
Sbjct:    12 KPTRPARSSSLATRSCSNSGSLTSFQ-AMVELKQKILTSISKLADRDTYQIAVEDLEKTI 70

Query:    70 QTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL 129
             Q+L+ E+LPM LNCLY+S +DPKPAVKKE + LL+ VC LH + T+ H+TKII+ IVKRL
Sbjct:    71 QSLTPETLPMFLNCLYDSCSDPKPAVKKECLHLLSYVCSLHCDSTAAHLTKIIAQIVKRL 130

Query:   130 KDSDSGMKEACRDSIGSLSKLYLNGKEE--NNGTV---VGLFVKPLFEAMMEQNKGVQSG 184
             KDSDSG+++ACRD+IG+LS +YL GKEE  N G+    VGLFVKPLFEAM EQNK VQSG
Sbjct:   131 KDSDSGVRDACRDTIGALSGIYLKGKEEGTNTGSASLAVGLFVKPLFEAMGEQNKVVQSG 190

Query:   185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL 244
             A+MCMA+MVE A+ PPV +FQKLC RICKLLSN +F+AKASLLPVV SLSQVGAIAPQSL
Sbjct:   191 ASMCMARMVESAASPPVTSFQKLCPRICKLLSNSSFLAKASLLPVVSSLSQVGAIAPQSL 250

Query:   245 EPLLQSIHECLGSTDWATRKXXXXXXXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVR 304
             E LL+SIH+CLGSTDW TRK               L+ +   ST+TVLE CRFDKIKPVR
Sbjct:   251 ESLLESIHDCLGSTDWVTRKAAAETLTALASHSSGLIKEKTDSTITVLETCRFDKIKPVR 310

Query:   305 DSMNEALQLWKKIAGK-VDVGSDDQKSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPL 363
             +S+ EALQLWKKI+GK VD  SDD K S      + + GE   NL      A+L  K   
Sbjct:   311 ESVTEALQLWKKISGKYVDGASDDSKLSASEQLGSEKNGEKRSNL------ADLMKKEAS 364

Query:   364 NGSSPASASLTKGKAGNISEKAVVILKKKAPALSDKELNPEFFQNLSRGSGDLPVEVVVP 423
             +GS+ +  S +KGK G   EKAV +LKKKAP LSDK+ NPEFFQ L R      VEVVVP
Sbjct:   365 DGSTLSPDSASKGK-GCFPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS---VEVVVP 420

Query:   424 RRCLXXXXXXXXXXXDPSDLDSKGRSNRMGNSQTDDFSVSLNNKHRSIDRGTAGG----- 478
             RRC               DL++ G SNR+ N+Q DD  V            T+G      
Sbjct:   421 RRCKNNDEEESGL----DDLNAMGSSNRLKNTQADDKQVKGRFDGNGSQARTSGDDKAGV 476

Query:   479 -NGKD-PRMRAPDVERELSGNRAGFSKTDSQAEGSFINNKGNWLAIQRQLMQLERQQAHL 536
              NGK+ P   AP V    + N++  S T ++   S I  +   L ++RQ   L       
Sbjct:   477 VNGKETPGHHAP-VSN--TDNQSEGSFTSNRGNWSAIQRQ--LLQLERQQTNLMNMLQEF 531

Query:   537 MNMLQDFMGGSHDSMVTLENRVRGLERVVE-DMARDLSISSG-RRGSNFAMGFEGSNNRS 594
             +    D M      +  LE  V  + R +     R  ++++G  + ++FA       N  
Sbjct:   532 IGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRRANLTAGFGKYNSFA-------NYP 584

Query:   595 LGKYNGFAEYS-GTKYNG--RTPFGERFAQSDGV----AASTRGRGPSWRSDMSDAWDFT 647
              GKYNG A    G++ +G  R          D      AAS  G+    RS  S+ ++  
Sbjct:   585 TGKYNGRAPGERGSQTDGAMRGRMWNSDMADDWFIPPHAASRNGQAGPRRSPRSEQYENE 644

Query:   648 AYCASRNG----QLGSRRAPGGGPVDSRSP-KSEHDNDQVGGRR-AWDKGT--GPVRLGE 699
                  R G      G+ R  G GP  +RS  ++  D   +   R A + G    P R+  
Sbjct:   645 HMGNGRRGWDNKASGTIRF-GEGP-SARSVWQASKDEATLEAIRVAGEDGAVPRPTRVAV 702

Query:   700 GPSARSVWQASKDEATLEAIRVAGEDSGTSRSARVA-IPELTAEAM--GD--------DN 748
              P A ++     +    + I V+   S    S RV  I    AE +  GD        D 
Sbjct:   703 APEAEAMGDDDNEGQERDPIWVSW--SNAMHSLRVGDIDAAYAEVLCAGDQHLVIKLMDK 760

Query:   749 VGQERDPIWTSWTN-AMDAIQVGDLDTAYAEVVSTGDDFLLVKLMDRSGPVVDQLSNEVA 807
              G   D +     N A++ I    LD +  ++  +    LL +L+ + G     +  E+ 
Sbjct:   761 TGPSLDQMSNEIANEALNFISQFLLDHSLYDICLSWSQQLL-ELVLQDGADTFGVPMELK 819

Query:   808 NEVLH 812
              E+L+
Sbjct:   820 TEILY 824

GO:0009507 "chloroplast" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010031 "circumnutation" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2036411 AT1G50890 "AT1G50890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 287/694 (41%), Positives = 394/694 (56%)

Query:    35 HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--SQESLPMLLNCLYESSNDPK 92
             H AMVE+KQ+ILTSLS+L DRDT+QIA++DLEK + ++  S E LP+LL+CL++SS+D K
Sbjct:    31 HSAMVELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLK 90

Query:    93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL 152
               VK+ES+RLL+ +C  +++L+ + + KIISHIVKRLKD+D+G+++ACRD+IGSLS  +L
Sbjct:    91 APVKRESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFL 150

Query:   153 NGKEENNG-----TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKL 207
               KE  NG     ++VGLF KPLFEAM EQNK +QSGAA+CM KM++ A++PPV AFQKL
Sbjct:   151 KEKEVENGNYVGSSLVGLFAKPLFEAMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKL 210

Query:   208 CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKXXX 267
             C RI KLL++ N++ KASLLPVVGSLSQVGAIAPQSLE LL SIHECLG T+W TRK   
Sbjct:   211 CPRISKLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAA 270

Query:   268 XXXXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGS-D 326
                        +LV D   STLT LEACRFDKIKPVR+S++EAL +WK IAGK + G+ D
Sbjct:   271 DVLISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMD 330

Query:   327 DQKSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAV 386
             DQK            GE     + S + A L  +G  +G S +S S++K         AV
Sbjct:   331 DQKDVSSEQCILERNGE---TDSVSCEEAGLVMQGSCDGLSSSSDSISK---------AV 378

Query:   387 VILKKKAPALSDKELNPEFFQNLS-RGSGDLPVEVVVPRRCLXXXXXXXXXXXDPSDLDS 445
             +IL+KKAP L+ K+LNPEFFQ L  RGSGD+PVEV++P R             D +    
Sbjct:   379 LILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTSVL 438

Query:   446 KGRSN---RMGNSQTDDFSVSLNNKHRSIDRGTAGGNGKDPRMRAPDVERELSGNRAGFS 502
             + RSN   R     T         + + +D    GG   + R+RA D      G+     
Sbjct:   439 RSRSNGLCRTAGVHTKQRHFGDFAREKWVDERMNGG---ESRLRAFD------GDHTEVI 489

Query:   503 KTD-SQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGL 561
             + D S+  G++   +   L ++RQ   +       M    D M    + +  LE  V  +
Sbjct:   490 QADTSENRGNWPPLQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEM 549

Query:   562 ERV--VEDMARDLSISSGRRGSNFAMGFEGSNN--RSLGKYNGFAEYSGTKYNGRTPFGE 617
              R   ++  AR  + +S R   +   G++  N    S        +  GT  + ++    
Sbjct:   550 SREMSIQSGARGKATASWRSDVD---GWDSPNYGPSSRNTQTSTRKIRGTGPSEQSGNSR 606

Query:   618 RFAQSDGVAASTRGRGPSWRSDMSDAWDFTAYCASR-NGQ-LGSRRAPGGGPVDSRSPKS 675
             R      VA    G GPS RS    + D     A R  G+  G+ R       ++ +   
Sbjct:   607 RAWDKSSVAIRL-GEGPSARSVWQASKDEATLEAIRVAGEDCGTSRNRRVSIPEAEAMMD 665

Query:   676 EHDNDQVGGRRA------WDKGTGPVRLGEGPSA 703
             E D+D  GG++       W      +R+G+  SA
Sbjct:   666 E-DDDNRGGQQGDPIWTCWSNSVHALRVGDTDSA 698

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2060161 AT2G07170 [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
 Identities = 135/388 (34%), Positives = 218/388 (56%)

Query:    40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKES 99
             E+K+K++ +L+KLADRDT+Q  +++LEKT++ L+ + +   L+C+ ++ ++ K AV+KE 
Sbjct:    26 ELKKKVVIALNKLADRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKEC 85

Query:   100 VRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159
             +RL+  +   H  L   ++ K++S IVKRLKD DS +++AC +++G L+      +++N 
Sbjct:    86 IRLMGTLARFHEGLVGPYLGKMVSSIVKRLKDPDSVVRDACIETMGVLASKMSCYEDQNF 145

Query:   160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQN 219
             G  V L VKPLFEA+ +QNK VQSGAA+C+A++++ + + PV   Q++  R  KLL+N +
Sbjct:   146 GVFVSL-VKPLFEAIGDQNKYVQSGAALCLARVIDSSPEAPVAIIQRMLMRTVKLLNNSH 204

Query:   220 FMAKASLLPVVGSLSQVGAIAPQS-LEPLLQSIHECLGSTDWATRKXXXXXXXXXXXXXX 278
             F+AK +++ +  S+   G    +S L   + S  + L + DW TRK              
Sbjct:   205 FIAKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATGE 264

Query:   279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKA 338
               +     S +  LE+CRFDK+KPVRDS+  AL+ WK        G        VPG  +
Sbjct:   265 KFLGPLKASCICSLESCRFDKVKPVRDSVILALKYWK--------G--------VPGSDS 308

Query:   339 PEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVV-ILKKKAPALS 397
             PEP E       ++   + S  G    S   S S  K K G +S K V  + +KK P +S
Sbjct:   309 PEPSE-------TESSVKESYNGARESSELFSTSDFKVKDG-MSIKYVTDVTRKKVP-VS 359

Query:   398 DKELNPEFFQNLSRGSG--DLPVEVVVP 423
              ++  P  + +  R S   D  +E+ VP
Sbjct:   360 ARQ-PPTRYNDDPRKSNQDDWHIEIAVP 386

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0000910 "cytokinesis" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007017 "microtubule-based process" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2025906 AT1G59850 "AT1G59850" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 7.8e-50, Sum P(2) = 7.8e-50
 Identities = 105/364 (28%), Positives = 179/364 (49%)

Query:    36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAV 95
             + + ++KQ+++  L++L+DRDT  +A  +L+     LS E+  + +NCL  + +  K  V
Sbjct:    17 MTVTDLKQRVIACLNRLSDRDTLALAAAELDSIALNLSPETFSLFINCLQSTDSSAKSPV 76

Query:    96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155
             +K  V LL+++   H +  + H++K++S +++RL+D DS ++ AC   + +   +  N  
Sbjct:    77 RKHCVSLLSVLSRSHGDSLAPHLSKMVSTVLRRLRDPDSSVRAAC---VAASVDMTTN-- 131

Query:   156 EENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214
                 G    +   P+ E ++   +   Q  AAMC+A  V+ A +P V   QK   +I KL
Sbjct:   132 --ITGQPFSILFGPMIETVIHDCDPNAQISAAMCLAAAVDAADEPDVEQLQKALPKIGKL 189

Query:   215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP-----LLQSIHECLGSTDWATRKXXXXX 269
             L ++ F AKA LL  +G++  +GA+  ++ E      LL ++ E L S DW  RK     
Sbjct:   190 LKSEGFKAKAELLGAIGTV--IGAVGGRNSEKAVLDWLLPNVSEFLSSDDWRARKAAAEA 247

Query:   270 XXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG-KVDVGSDDQ 328
                       L      + L +LE+ RFDK+K VR++MN  L LWK++ G   +V     
Sbjct:   248 MARVAMVEEELAPLYKKTCLGILESRRFDKVKLVRETMNRTLGLWKQLEGDSTEVSESSS 307

Query:   329 KSSPVPGGKAPEPGEDLKNLNPSDKRAELSAKGPLNGSSPASASLTKGKAGNISEKAVVI 388
              S     G +   G+    L   D+        PL+  S     L +G      E+  V+
Sbjct:   308 SSKSASSGLSATSGKRSNTLKGKDRNLNT----PLSSKSNDVEPLDRGDTPKDVEQEAVV 363

Query:   389 LKKK 392
              K+K
Sbjct:   364 SKEK 367

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205739 AT1G27210 [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 7.1e-47, Sum P(2) = 7.1e-47
 Identities = 96/298 (32%), Positives = 163/298 (54%)

Query:    40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKES 99
             ++KQ+++  L+KLADRDT  +A  +L+   + L+ +S    LNC++ + +  K  V+K+ 
Sbjct:    34 DLKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPFLNCIHNTDSSVKSPVRKQC 93

Query:   100 VRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159
             V LL+++   H +  + H+ K++S +++RL+D DS ++ AC  +   +S    +   +  
Sbjct:    94 VALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSA---HVTRQPF 150

Query:   160 GTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ 218
              +V     KPL E ++++ +  +Q GAA+C+A  V+ A+DP     +K   +I KLL + 
Sbjct:   151 ASVA----KPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRKSLPKIGKLLKSD 206

Query:   219 NFMAKASLLPVVGSLSQVGAIAPQS-LEPLLQSIHECLGSTDWATRKXXXXXXXXXXXXX 277
              F AKA+LL  VGS+   G    +  L+ L+  + E L S DWA RK             
Sbjct:   207 GFKAKAALLSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKSAAEALGKVATAE 266

Query:   278 XNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPG 335
              +L      +  T LE+ RFDK+K VR++MN AL LWK+++   +      +SS   G
Sbjct:   267 -DLASQYKKTCTTALESRRFDKVKSVRETMNRALNLWKEVSTDDEASLSPSRSSTDDG 323

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2154144 AT5G62580 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 4.7e-38, Sum P(2) = 4.7e-38
 Identities = 110/403 (27%), Positives = 185/403 (45%)

Query:    36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES----LPMLLNCLYESSNDP 91
             +A    KQ +   L+KL DRDT  +A  +L+   + +   S    L   ++ +       
Sbjct:     1 MATKNSKQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGD 60

Query:    92 KPAVKKESVRLLALVC-ELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150
             KPAV+K  + LLA++   L     S  ++KI++ I +RL+D DS ++  C  ++ ++S  
Sbjct:    61 KPAVRKHCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISS- 119

Query:   151 YLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP-PVVAFQKLC 208
                            F+KPL + +  EQ    Q GAA+C+A  ++ ASDP PV   Q L 
Sbjct:   120 -----RTTKPPFYSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLL 174

Query:   209 ARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPL-LQSIHECL----GSTDWATR 263
              R+ KL+    F AK++ + V+GS+   G ++  S+    L+ + +CL     S DWA R
Sbjct:   175 PRLEKLVKCNAFKAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAAR 234

Query:   264 KXXXXXXXXXXXXXXNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDV 323
             K              N + +     L + E+ ++DK+K VR+ MN+ ++ WK++    D+
Sbjct:   235 KAAAEALGRLATMERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVP---DL 291

Query:   324 GSDDQKSSPVPGGKAPEPGEDLKNLNPSDKRA-ELSAKGP---LNGSSPASASLTKGKAG 379
                 ++ SP P   A   G+      PS  R     AK     +N S+P  +SL      
Sbjct:   292 S---EEVSP-PRSNASSKGDASDGRYPSGSRVGSTPAKSRTHLVNRSTPPGSSLATTARK 347

Query:   380 NISEKAVVILKKKAPALSDKELNPEFFQNLS--RGSGDLPVEV 420
               + K++    +K  +L+     P   + L    G   +P  V
Sbjct:   348 QANRKSI---DQKKTSLTASLTKPNVRRRLEWKAGGASIPTGV 387

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504956282 AT1G54385 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 63/300 (21%), Positives = 140/300 (46%)

Query:    41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESV 100
             ++Q+ L +L K  D ++ + A++ L+  ++ L  +++P  L  ++E+  +      + ++
Sbjct:     9 LRQE-LANLDK--DTESRKSAMKALKSYVKDLDSKAIPGFLAQVFETK-ETNSLSGEYTI 64

Query:   101 RLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG--MKEACRDSIGSLSKLYLNGK--E 156
              L  ++  +H       +  I+S IVK L  S     +++AC   I ++++  ++    E
Sbjct:    65 SLYEILARVHGPNIVPQIDTIMSTIVKTLASSAGSFPLQQACSKVIPAIARYGIDPTTTE 124

Query:   157 ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK--- 213
             +    ++    KPL ++++   + + SGAA+C+  +V+  SD    A  ++  R+C+   
Sbjct:   125 DKKRVIIHSLCKPLTDSLLASQESLTSGAALCLKALVD--SDNWRFASDEMVNRVCQNVV 182

Query:   214 --LLSNQNFMAKASL-LPVVGSLSQVGAIAPQSLEPLLQSIHECL-----GSTDWATRKX 265
               L SN N   +  L + +V SL++   +  ++   LL  IH  L     G ++  ++K 
Sbjct:   183 VALDSNSN---QTHLQMGLVMSLAKHNPLIVEAYARLL--IHTGLRILGFGVSEGNSQKR 237

Query:   266 XXXXXXXXXXXXX---NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVD 322
                               +       +  +E C+ D++  VR +  EA+   K+IA +++
Sbjct:   238 LSAVQMLNFLMKCLDPRSIYSEVELIIKEMERCQSDQMAYVRGAAYEAMMTSKRIAAELE 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      898       844   0.00081  122 3  11 23  0.46    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  413 KB (2198 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  80.64u 0.23s 80.87t   Elapsed:  00:00:04
  Total cpu time:  80.65u 0.23s 80.88t   Elapsed:  00:00:04
  Start:  Mon May 20 15:32:52 2013   End:  Mon May 20 15:32:56 2013

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T041	MAPT_ARATH	No assigned EC number	0.6137	0.9409	0.9780	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027360001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (846 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	898
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.97
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.95
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.93
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.49
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.43
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.43
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.41
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.23
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.14
PRK09687	280	putative lyase; Provisional	99.1
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.09
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.06
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.92
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.92
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.92
PRK09687	280	putative lyase; Provisional	98.92
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.88
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.82
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.78
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.76
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.7
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.65
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.6
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.6
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.57
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.55
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.49
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.48
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.47
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.47
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.46
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.45
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.42
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.4
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.39
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.39
PTZ00429	746	beta-adaptin; Provisional	98.38
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.32
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.31
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.29
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.28
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.22
PTZ00429	746	beta-adaptin; Provisional	98.16
KOG2956	516	consensus CLIP-associating protein [General functi	98.13
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.01
PF05004	309	IFRD: Interferon-related developmental regulator (	98.01
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.95
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.92
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.91
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.86
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.84
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.82
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.78
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.77
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.76
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.73
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.67
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.61
KOG2956	516	consensus CLIP-associating protein [General functi	97.52
TIGR02270	410	conserved hypothetical protein. Members are found	97.51
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.5
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.44
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.39
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.36
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	97.36
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.34
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.34
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.33
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.29
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.27
PF05004	309	IFRD: Interferon-related developmental regulator (	97.27
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.22
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.2
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.18
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.17
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.14
TIGR02270	410	conserved hypothetical protein. Members are found	97.1
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.96
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.93
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.91
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.9
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.88
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.85
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.81
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.76
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.74
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.73
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	96.72
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.56
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.55
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.44
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.4
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.37
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.37
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.35
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.27
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.25
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.22
KOG0567	289	consensus HEAT repeat-containing protein [General	96.14
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.07
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.03
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.01
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.96
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.95
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.93
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.91
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.89
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.88
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.74
KOG2025	892	consensus Chromosome condensation complex Condensi	95.72
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	95.72
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.71
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.71
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.64
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	95.62
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.62
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	95.57
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.54
KOG2025	892	consensus Chromosome condensation complex Condensi	95.53
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.48
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	95.44
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	95.4
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.39
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.36
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.31
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	95.3
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	95.13
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	95.1
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.08
KOG2549	576	consensus Transcription initiation factor TFIID, s	95.03
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.92
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.92
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	94.83
PF10350	255	DUF2428: Putative death-receptor fusion protein (D	94.77
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.76
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.69
KOG2081	559	consensus Nuclear transport regulator [Intracellul	94.67
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	94.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	94.66
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.43
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.4
PF05536	543	Neurochondrin: Neurochondrin	94.4
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.39
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.28
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.16
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.1
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.04
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.98
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	93.95
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	93.89
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.75
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.68
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.67
KOG2149	393	consensus Uncharacterized conserved protein [Funct	93.51
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.49
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	93.42
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.2
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	93.15
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	93.11
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	93.06
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	92.82
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.77
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.77
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.75
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.67
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	92.65
KOG2842	427	consensus Interferon-related protein PC4 like [Cyt	92.64
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	92.38
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.26
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	92.26
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.14
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	92.12
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	92.03
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	91.95
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.91
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	91.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	91.7
KOG1243	690	consensus Protein kinase [General function predict	91.45
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	91.18
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.12
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	91.02
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	90.87
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	90.85
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	90.81
KOG0413	1529	consensus Uncharacterized conserved protein relate	90.65
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	90.59
KOG2549	576	consensus Transcription initiation factor TFIID, s	90.4
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	90.28
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	89.95
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	89.89
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	89.6
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	89.56
KOG4413	524	consensus 26S proteasome regulatory complex, subun	89.54
KOG2062	929	consensus 26S proteasome regulatory complex, subun	89.52
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	89.5
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	89.3
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	89.29
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.27
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	89.13
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	89.1
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	89.07
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	88.99
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	88.94
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	88.86
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	88.42
KOG1243	690	consensus Protein kinase [General function predict	88.37
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	88.02
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	87.46
PF05804	708	KAP: Kinesin-associated protein (KAP)	87.35
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	87.34
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	87.27
COG5656	970	SXM1 Importin, protein involved in nuclear import	87.21
COG5116	926	RPN2 26S proteasome regulatory complex component [	86.06
KOG0567	289	consensus HEAT repeat-containing protein [General	85.98
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	85.69
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	84.86
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	84.81
KOG1293	678	consensus Proteins containing armadillo/beta-caten	84.53
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	84.4
KOG1293	678	consensus Proteins containing armadillo/beta-caten	84.29
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	84.12
KOG2062	929	consensus 26S proteasome regulatory complex, subun	84.11
PF11919	90	DUF3437: Domain of unknown function (DUF3437); Int	83.92
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	83.89
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	83.61
PF05327	563	RRN3: RNA polymerase I specific transcription init	83.56
KOG1048	717	consensus Neural adherens junction protein Plakoph	83.41
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	83.32
KOG0413	1529	consensus Uncharacterized conserved protein relate	83.08
COG5116	926	RPN2 26S proteasome regulatory complex component [	82.75
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	82.14
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	81.94

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.4e-30  Score=292.93  Aligned_cols=258  Identities=20%  Similarity=0.244  Sum_probs=230.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V  136 (898)
                      .|+|.++.||.++.-++.+.++.+|++|.+...+++|.+|++++++||+|||||.+.+.||||.++|+++..|.|..+.|
T Consensus       371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV  450 (885)
T KOG2023|consen  371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV  450 (885)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence            79999999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002638          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS  216 (898)
Q Consensus       137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk  216 (898)
                      |.++|||+++++.|++...   ..+++..+|.+|+..+.+.||.||+|||+|+|.+.|++.....|||..|+..|.+.++
T Consensus       451 RsITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~  527 (885)
T KOG2023|consen  451 RSITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG  527 (885)
T ss_pred             eeeeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999997643   3467777888888888999999999999999999999999889999999999999998


Q ss_pred             CCchhhHH--HHHHHHHHHH-hcc-ccC-cccHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHHHHhcchHHHhhH---
Q 002638          217 NQNFMAKA--SLLPVVGSLS-QVG-AIA-PQSLEPLLQSIHEC---LGSTDWATRKAAADALSALALHSSNLVIDGA---  285 (898)
Q Consensus       217 s~~~kaK~--alL~aIgSLA-~vG-a~~-~pyld~lLp~L~e~---LsddDW~vRKaA~EaL~sLA~avge~L~Py~---  285 (898)
                        .||.|+  .+|++||++| .+| +.. +.|++.+||+|.+.   |+|+|..+ ..-.|||++||.++|+.|.||.   
T Consensus       528 --kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~V  604 (885)
T KOG2023|consen  528 --KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPV  604 (885)
T ss_pred             --HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHH
Confidence              899998  7999999999 488 443 88999999999975   78877554 5679999999999999999984   


Q ss_pred             -HHHHHHHHhhhc-------C--CChhhHHHHHHHHHHHHHhhcC
Q 002638          286 -TSTLTVLEACRF-------D--KIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       286 -~~~I~~LE~~Rf-------D--KvKpVRD~A~eALelWK~La~~  320 (898)
                       .+|+.+++.|.+       |  -+-|.||+++.+|++..+++..
T Consensus       605 y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaeg  649 (885)
T KOG2023|consen  605 YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEG  649 (885)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHH
Confidence             777888874422       1  1245889999999999999843

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.8e-27  Score=280.45  Aligned_cols=258  Identities=17%  Similarity=0.201  Sum_probs=226.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChH
Q 002638           57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG  135 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~  135 (898)
                      +...|.+.||.++..|+++. +++++.++....++++|..|++++++|+.++|||.+.+.++|++|+++|++.|+||+|.
T Consensus       325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr  404 (1075)
T KOG2171|consen  325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR  404 (1075)
T ss_pred             cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            88999999999999999877 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhc-CCCCchhHHHHHH-HH
Q 002638          136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECA-SDPPVVAFQKLCA-RI  211 (898)
Q Consensus       136 VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL--~eqnk~VQegAasALAkiIE~a-~d~~~~yL~~LlP-RL  211 (898)
                      ||.|||++||+++..+ .+.   ...++.+.++|++-.+  ..++++||..||.||-.+.|++ ++.+.+||+.||. +|
T Consensus       405 Vr~AA~naigQ~stdl-~p~---iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l  480 (1075)
T KOG2171|consen  405 VRYAALNAIGQMSTDL-QPE---IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL  480 (1075)
T ss_pred             HHHHHHHHHHhhhhhh-cHH---HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999 332   2356666776555444  3469999999999999999886 5667799999999 55


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002638          212 CKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGS----TDWATRKAAADALSALALHSS-NLVIDGA  285 (898)
Q Consensus       212 lkLLks~~~kaK~alL~aIgSLA~v-Ga~~~pyld~lLp~L~e~Lsd----dDW~vRKaA~EaL~sLA~avg-e~L~Py~  285 (898)
                      ..++.+.+..+|..++.+|+|+|.+ +..|.+|++.+||.|..+|..    +...+|..++||++.|+.++| +.|.|+.
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a  560 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA  560 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence            5555667788999999999999864 478999999999999999875    347799999999999999999 9999999


Q ss_pred             HHHHHHHHhh---hcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638          286 TSTLTVLEAC---RFDKIKPVRDSMNEALQLWKKIAGKV  321 (898)
Q Consensus       286 ~~~I~~LE~~---RfDKvKpVRD~A~eALelWK~La~~~  321 (898)
                      .++|+.+...   -.|.+.+.|+   ..+.+|..+|..+
T Consensus       561 ~eliqll~~~~~~~~~~dd~~~s---y~~~~warmc~il  596 (1075)
T KOG2171|consen  561 EELIQLLLELQGSDQDDDDPLRS---YMIAFWARMCRIL  596 (1075)
T ss_pred             HHHHHHHHhhcccchhhccccHH---HHHHHHHHHHHHh
Confidence            9999988655   5556676777   4899999999987

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=7.8e-26  Score=257.67  Aligned_cols=266  Identities=13%  Similarity=0.095  Sum_probs=241.0

Q ss_pred             HHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-hhhH
Q 002638           42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHV  118 (898)
Q Consensus        42 K~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I-~PhL  118 (898)
                      -+++.+.|...  .|++|++.+...|+++-.  -| +|.+||-||+....+.+-..|..|+++|++..++|...+ .+.+
T Consensus        12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~   88 (885)
T KOG2023|consen   12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FP-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVL   88 (885)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhc--cc-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHH
Confidence            46777888666  699999999999999887  34 699999999988888999999999999999999999775 5679


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002638          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD  198 (898)
Q Consensus       119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d  198 (898)
                      .+|.+.++++|.|+++.||.+..-.|++++...   +.    ..|+++|+.|.+.|..++-+.|+||+.||.|+||+..+
T Consensus        89 ~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~~----~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~  161 (885)
T KOG2023|consen   89 DYIKSECLHGLGDASPLIRATVGIVITTIASTG---GL----QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ  161 (885)
T ss_pred             HHHHHHHHhhccCchHHHHhhhhheeeeeeccc---cc----ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH
Confidence            999999999999999999999999988888766   32    56999999999999999999999999999999998622


Q ss_pred             -----CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002638          199 -----PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (898)
Q Consensus       199 -----~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~s  272 (898)
                           .....|+.|+|||+.+++|++.++|..++.||+.++-.. +.+..+++.++..|+....|++..+||.+|.+|+.
T Consensus       162 ~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~  241 (885)
T KOG2023|consen  162 FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVF  241 (885)
T ss_pred             HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence                 223568999999999999999999999999999998655 67888999999999999999999999999999999


Q ss_pred             HHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       273 LA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      +....++++.||+.++|+||.....|.++   ++|+||||||..++..
T Consensus       242 Llevr~dkl~phl~~IveyML~~tqd~dE---~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  242 LLEVRPDKLVPHLDNIVEYMLQRTQDVDE---NVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHhcHHhcccchHHHHHHHHHHccCcch---hHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999   8999999999999943

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.3e-12  Score=150.94  Aligned_cols=299  Identities=15%  Similarity=0.131  Sum_probs=231.7

Q ss_pred             CccccCCCCCCCCCcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCCh
Q 002638           16 SQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKP   93 (898)
Q Consensus        16 ~~~~~~~~~~~~~~~~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~--Lp~fLs~L~es~~s~k~   93 (898)
                      ++.-|.++++|.++.+.....--.+.-.+.+.-+-...+-..++-|.-++-.+...+.-+.  =..|+.-|.....+.++
T Consensus       109 s~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~  188 (569)
T KOG1242|consen  109 SKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS  188 (569)
T ss_pred             cHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch
Confidence            3445688889998777665544433333333332224444455566666666666543222  23567788877777777


Q ss_pred             hhHHH-HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHH
Q 002638           94 AVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE  172 (898)
Q Consensus        94 ~vRKe-AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~e  172 (898)
                      ..|++ ++.++..++...+....||+..++|.|+..+.|..+.||+|+.+++-++...+...       -+..++++++.
T Consensus       189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-------aVK~llpsll~  261 (569)
T KOG1242|consen  189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-------AVKLLLPSLLG  261 (569)
T ss_pred             hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-------hhhHhhhhhHH
Confidence            76664 88888888888888899999999999999999999999999999999999999332       27889999999


Q ss_pred             HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc----------------
Q 002638          173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV----------------  236 (898)
Q Consensus       173 aL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v----------------  236 (898)
                      .|.+..+..-.++..-|..+.++++.+..-+++.|+|.+.+.|.+.+.++|.+.+.|+--+-.+                
T Consensus       262 ~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~  341 (569)
T KOG1242|consen  262 SLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA  341 (569)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            9987788888999999999999999988889999999999999999999887766654332110                


Q ss_pred             -c---------------ccC-----cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--chHHHhhHHHHHHHHH
Q 002638          237 -G---------------AIA-----PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS--SNLVIDGATSTLTVLE  293 (898)
Q Consensus       237 -G---------------a~~-----~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av--ge~L~Py~~~~I~~LE  293 (898)
                       +               -.|     .|-+..++|.|.+.|.+.+..+++.++..+..++..+  +..+.||++.+++-++
T Consensus       342 l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk  421 (569)
T KOG1242|consen  342 LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK  421 (569)
T ss_pred             hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence             0               001     3556677777888888888899999999999999999  4789999999999999


Q ss_pred             hhhcCCChhhHHHHHHHH-HHHHHhhcCC
Q 002638          294 ACRFDKIKPVRDSMNEAL-QLWKKIAGKV  321 (898)
Q Consensus       294 ~~RfDKvKpVRD~A~eAL-elWK~La~~~  321 (898)
                      ..-.|-++.||.++..|| .+.+.+.-++
T Consensus       422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~  450 (569)
T KOG1242|consen  422 ENLDDAVPEVRAVAARALGALLERLGEVS  450 (569)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999 6666666554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.4e-11  Score=144.41  Aligned_cols=278  Identities=16%  Similarity=0.196  Sum_probs=213.9

Q ss_pred             hhHhHHHHHHHHHHHHHcCC---Chh---HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002638           34 SHLAMVEMKQKILTSLSKLA---DRD---THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC  107 (898)
Q Consensus        34 ~~~~~~eLK~rll~~L~KLs---DrD---T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA  107 (898)
                      ...++..+...|+..|.|-+   |.|   ..+.|-.+|..+++....+-++..|++|.+++++++|..|.+++.+||-+-
T Consensus       313 a~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl  392 (859)
T KOG1241|consen  313 ARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSIL  392 (859)
T ss_pred             HHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence            34566788888899999862   222   788888999999998877779999999999999999999999999999999


Q ss_pred             HHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc-------------------------------
Q 002638          108 ELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK-------------------------------  155 (898)
Q Consensus       108 Eg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~-------------------------------  155 (898)
                      +|-. +.+.|+.+.-+|.|++.+.||.-.||+++.|++|+++..+....                               
T Consensus       393 ~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf  472 (859)
T KOG1241|consen  393 EGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAF  472 (859)
T ss_pred             cCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHH
Confidence            9866 44899999999999999999999999999999999987764320                               


Q ss_pred             -----------ccC-----Cch----------------------------------------------------------
Q 002638          156 -----------EEN-----NGT----------------------------------------------------------  161 (898)
Q Consensus       156 -----------~e~-----~~~----------------------------------------------------------  161 (898)
                                 ...     ...                                                          
T Consensus       473 ~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~  552 (859)
T KOG1241|consen  473 ISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLD  552 (859)
T ss_pred             HHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence                       000     000                                                          


Q ss_pred             ----------------------------------------hHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCC
Q 002638          162 ----------------------------------------VVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPP  200 (898)
Q Consensus       162 ----------------------------------------~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~~  200 (898)
                                                              ....++..++..|.. ..-.|++-|++|..++++..+...
T Consensus       553 q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F  632 (859)
T KOG1241|consen  553 QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGF  632 (859)
T ss_pred             HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhH
Confidence                                                    001111111111111 122356666677777777666666


Q ss_pred             chhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHh
Q 002638          201 VVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALH  276 (898)
Q Consensus       201 ~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~v-Ga~~~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~a  276 (898)
                      ..|.+.+.|.|..-|++ ..|++-.+++.++|-++.+ ++.+.||.+.+|..|.++|+++  +..++-+.+-++|-||.+
T Consensus       633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla  712 (859)
T KOG1241|consen  633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA  712 (859)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence            77888899999999955 5788888999999999864 5789999999999999999996  466888889999999999


Q ss_pred             cchHHHhhHHHHHHHHHhh---hcCC--------ChhhHHHHHHHH
Q 002638          277 SSNLVIDGATSTLTVLEAC---RFDK--------IKPVRDSMNEAL  311 (898)
Q Consensus       277 vge~L~Py~~~~I~~LE~~---RfDK--------vKpVRD~A~eAL  311 (898)
                      +|..|.||+..++..|+..   ..|+        +..+|+.+++|.
T Consensus       713 Ig~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay  758 (859)
T KOG1241|consen  713 IGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY  758 (859)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999988743   3443        244788755553

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.43  E-value=8.7e-12  Score=144.97  Aligned_cols=214  Identities=17%  Similarity=0.211  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCC---------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHH
Q 002638           57 THQIAIEDLEKTIQTLSQES---------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK  127 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~---------Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilr  127 (898)
                      -++++++..++++..|+.-+         +..+|.+++++..+.     ...+..||+++...+..+.||||+|+++|++
T Consensus       732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d-----~vml~gfg~V~~~lg~r~kpylpqi~stiL~  806 (1172)
T KOG0213|consen  732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED-----SVMLLGFGTVVNALGGRVKPYLPQICSTILW  806 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch-----hhhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence            67899999999998875322         555666666544331     2567889999999999999999999999999


Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-CCchhHHH
Q 002638          128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQK  206 (898)
Q Consensus       128 rLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d-~~~~yL~~  206 (898)
                      +|+.+.+.||..+++.+++|+..+-.++.   +..+..+=--|++.|++..+.|-.....||.+|+...+- ...+-+..
T Consensus       807 rLnnksa~vRqqaadlis~la~Vlktc~e---e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d  883 (1172)
T KOG0213|consen  807 RLNNKSAKVRQQAADLISSLAKVLKTCGE---EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD  883 (1172)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHhccH---HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence            99999999999999999999999955532   345666667899999999999998888888888876532 22355788


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS--IHECLGSTDWATRKAAADALSALALHSS  278 (898)
Q Consensus       207 LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~--L~e~LsddDW~vRKaA~EaL~sLA~avg  278 (898)
                      |+|+|.++|+|.|-|+.+.+++++|.|+.-|..+.+.-+|.--|  |++.|..-...+|++|.++||.||.++|
T Consensus       884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG  957 (1172)
T KOG0213|consen  884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG  957 (1172)
T ss_pred             hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence            99999999999999999999999999997775566556665554  7788999889999999999999999999

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=5.3e-11  Score=144.74  Aligned_cols=275  Identities=17%  Similarity=0.232  Sum_probs=219.0

Q ss_pred             HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch
Q 002638           36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS  115 (898)
Q Consensus        36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~  115 (898)
                      +.-..+|.+++.++.+=.....++--++.+-.|++.+-|+..|-+|.+|.+..+++++..|+.|+++|..+.+..+....
T Consensus        75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~  154 (1075)
T KOG2171|consen   75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence            33456777777777666556677877888888888876668999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc----CCHhHHHHHHHHHHH
Q 002638          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAK  191 (898)
Q Consensus       116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e----qnk~VQegAasALAk  191 (898)
                      ||+..+++.+.+++.|++..||-+++.+++.++.++-...  ..-..+..++|.++..|.+    .+..+-..++.||..
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~--~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK--SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch--HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            9999999999999999998899999999999999992110  0114566777778777743    344444557777777


Q ss_pred             HHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcc----ccCcccHHHHHHH---------------
Q 002638          192 MVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQS---------------  250 (898)
Q Consensus       192 iIE~a~d~~~~yL~~LlPRLlkLLks~--~~kaK~alL~aIgSLA~vG----a~~~pyld~lLp~---------------  250 (898)
                      +.|..+..+.++|..++.-.+++.++.  ...+|..+|.+|-+++...    ...++|...+++.               
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            777778888889999999999999886  4567888888888876431    1122333333333               


Q ss_pred             ----------------------------------------HHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638          251 ----------------------------------------IHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (898)
Q Consensus       251 ----------------------------------------L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~  290 (898)
                                                              +-.+|.+.+|.-|++|+-+|+.++...++.+.+.++.++.
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~  392 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILP  392 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                                                    4455778899999999999999999999999999999999


Q ss_pred             HHHhhhcCCChhhHHHHHHHHH
Q 002638          291 VLEACRFDKIKPVRDSMNEALQ  312 (898)
Q Consensus       291 ~LE~~RfDKvKpVRD~A~eALe  312 (898)
                      .....-.|.++-||-+|+-|+.
T Consensus       393 ~Vl~~l~DphprVr~AA~naig  414 (1075)
T KOG2171|consen  393 IVLNGLNDPHPRVRYAALNAIG  414 (1075)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHH
Confidence            9999999999999998544443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.23  E-value=1.4e-09  Score=124.60  Aligned_cols=255  Identities=15%  Similarity=0.129  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHcCC------ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch
Q 002638           39 VEMKQKILTSLSKLA------DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE  112 (898)
Q Consensus        39 ~eLK~rll~~L~KLs------DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd  112 (898)
                      -+.-..++..|.|-+      |=.....|..+|+.+++.....-+.+.|.++.+++.+++|..|++++++||-+.++-.+
T Consensus       320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~  399 (858)
T COG5215         320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE  399 (858)
T ss_pred             HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence            345556777887751      22277888889999998776666999999999999999999999999999999998775


Q ss_pred             h-chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc---cc-------------ccCC----------------
Q 002638          113 L-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN---GK-------------EENN----------------  159 (898)
Q Consensus       113 ~-I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik---~~-------------~e~~----------------  159 (898)
                      . +.++.++.+|.|+....|+---|.+.++|++|+|+.++..   +.             ..+.                
T Consensus       400 ~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~  479 (858)
T COG5215         400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD  479 (858)
T ss_pred             HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence            5 7899999999999999999999999999999999988753   10             0000                


Q ss_pred             ---------chhHHhhHHHHHHHHh------cC-----------------------------------------------
Q 002638          160 ---------GTVVGLFVKPLFEAMM------EQ-----------------------------------------------  177 (898)
Q Consensus       160 ---------~~~~~~lL~pL~eaL~------eq-----------------------------------------------  177 (898)
                               ...+..|.+.++.+|.      .+                                               
T Consensus       480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q  559 (858)
T COG5215         480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ  559 (858)
T ss_pred             hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                     0001111111111110      00                                               


Q ss_pred             ---------CHhHHHHHHHHHHHHHHhcC------------------------------------------CCCchhHHH
Q 002638          178 ---------NKGVQSGAAMCMAKMVECAS------------------------------------------DPPVVAFQK  206 (898)
Q Consensus       178 ---------nk~VQegAasALAkiIE~a~------------------------------------------d~~~~yL~~  206 (898)
                               -..+|.--|.-|+++|..-+                                          +....|+.+
T Consensus       560 ~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~  639 (858)
T COG5215         560 ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK  639 (858)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence                     12233344444444443221                                          111234667


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHHHh
Q 002638          207 LCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLVID  283 (898)
Q Consensus       207 LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~avge~L~P  283 (898)
                      .+|.|.+.|+...+.+-..++..||-++. .|..|.+|.+.+|..|.++|+++  +..++-+.+-+++-||.++|-.|.+
T Consensus       640 fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~  719 (858)
T COG5215         640 FIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFES  719 (858)
T ss_pred             hhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHH
Confidence            88888888887788887888888888885 56789999999999999999985  5678888999999999999999999


Q ss_pred             hHHHHHHHHH
Q 002638          284 GATSTLTVLE  293 (898)
Q Consensus       284 y~~~~I~~LE  293 (898)
                      |++.+|-.++
T Consensus       720 YL~~im~L~q  729 (858)
T COG5215         720 YLDMIMMLFQ  729 (858)
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.14  E-value=1.8e-09  Score=111.85  Aligned_cols=197  Identities=16%  Similarity=0.198  Sum_probs=143.5

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh--c---hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH--S---ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~--g---d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l  151 (898)
                      +..++..|.....+.+|..|.+++.-|..++.++  .   +.+.++|..++..|...+.|..+.|-..+|.+++.|+..+
T Consensus         5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen    5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL   84 (228)
T ss_dssp             -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4455556645556789999999999999999999  2   3345566677799999999999999999999999999999


Q ss_pred             hcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHHhcCCchhhHHHHHHHH
Q 002638          152 LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKL-CARICKLLSNQNFMAKASLLPVV  230 (898)
Q Consensus       152 ik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~L-lPRLlkLLks~~~kaK~alL~aI  230 (898)
                      -.. +   ..+...++++|++.+++.++.+...|..||..+++.+.     |...+ .+.+...+++.+.++|..++.++
T Consensus        85 ~~~-~---~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l  155 (228)
T PF12348_consen   85 GSH-F---EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWL  155 (228)
T ss_dssp             GGG-G---HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             hHh-H---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            433 2   36688899999999999999999999999999999764     33455 77888889999999999999999


Q ss_pred             HHHHh-cc---ccC--cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002638          231 GSLSQ-VG---AIA--PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI  282 (898)
Q Consensus       231 gSLA~-vG---a~~--~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~  282 (898)
                      ..++. .+   ..+  ...++.+++.|..++.|.+..+|.+|-++|..+....|+...
T Consensus       156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            98864 33   223  224688999999999999999999999999999999986433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PRK09687 putative lyase; Provisional

Probab=99.10  E-value=5.3e-09  Score=113.67  Aligned_cols=184  Identities=11%  Similarity=0.087  Sum_probs=129.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh-hcC
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKD  131 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr-LkD  131 (898)
                      .|...+..|+..|..+-   +++.++.+...+    .+.++.+|..++.+||.+..  .+..   .+..++.+... ++|
T Consensus        35 ~d~~vR~~A~~aL~~~~---~~~~~~~l~~ll----~~~d~~vR~~A~~aLg~lg~--~~~~---~~~a~~~L~~l~~~D  102 (280)
T PRK09687         35 HNSLKRISSIRVLQLRG---GQDVFRLAIELC----SSKNPIERDIGADILSQLGM--AKRC---QDNVFNILNNLALED  102 (280)
T ss_pred             CCHHHHHHHHHHHHhcC---cchHHHHHHHHH----hCCCHHHHHHHHHHHHhcCC--Cccc---hHHHHHHHHHHHhcC
Confidence            45557778887776543   233344444432    36678999999999998643  1111   45667777766 799


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002638          132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI  211 (898)
Q Consensus       132 pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRL  211 (898)
                      +++.||..++.+||.+.....        ...+.++..|..++.+.++.|+.+|+.||..+-    +      +..++-|
T Consensus       103 ~d~~VR~~A~~aLG~~~~~~~--------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~------~~ai~~L  164 (280)
T PRK09687        103 KSACVRASAINATGHRCKKNP--------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D------EAAIPLL  164 (280)
T ss_pred             CCHHHHHHHHHHHhccccccc--------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C------HHHHHHH
Confidence            999999999999998753321        113456777777888889999999999996442    1      2367888


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002638          212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL  273 (898)
Q Consensus       212 lkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sL  273 (898)
                      +.+|+++++.+|..++.++|.+ .      ..-+.+++.|...|.|.++.+|+.|+.+|+.+
T Consensus       165 ~~~L~d~~~~VR~~A~~aLg~~-~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        165 INLLKDPNGDVRNWAAFALNSN-K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcC-C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence            8888998888888888777775 1      11236777788888888889999888888853

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=5.5e-09  Score=121.39  Aligned_cols=251  Identities=16%  Similarity=0.167  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhh
Q 002638           40 EMKQKILTSLSKLAD--RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH  117 (898)
Q Consensus        40 eLK~rll~~L~KLsD--rDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~Ph  117 (898)
                      .+..-+..+|.+.+|  ...++.|....+.+...+++..+..+|+.++..+...+|+.+.+++.+||.++...++.+.-.
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~  292 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC  292 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence            345555666666654  448888888999999999887788888888777766699999999999999999888999999


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh--
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC--  195 (898)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~--  195 (898)
                      +|.|+|.+...|-|..+.||.|+-.++-.+.+.+ +.      ..+..+++-|+++|.+++..+.+    |+..+...  
T Consensus       293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN------~dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttF  361 (569)
T KOG1242|consen  293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DN------PDIQKIIPTLLDALADPSCYTPE----CLDSLGATTF  361 (569)
T ss_pred             HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHhcCcccchHH----HHHhhcceee
Confidence            9999999999999999999999999999999998 21      23788999999999998876664    33333322  


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002638          196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (898)
Q Consensus       196 a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~s  272 (898)
                      ......+-|..|+|-|..-|...+.-.|-.+...++=++ -+.  ....+|+..++|.|...+.+.+..+|--|..+|+.
T Consensus       362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~  441 (569)
T KOG1242|consen  362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA  441 (569)
T ss_pred             eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence            133344678889999999998776665554444554443 243  45789999999999999999999999999999999


Q ss_pred             HHHhcc-hHHHhhHHHHHHHHHhhhcCCCh
Q 002638          273 LALHSS-NLVIDGATSTLTVLEACRFDKIK  301 (898)
Q Consensus       273 LA~avg-e~L~Py~~~~I~~LE~~RfDKvK  301 (898)
                      +...+| ..|..-.+.+.+.+-.+..++.+
T Consensus       442 l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~  471 (569)
T KOG1242|consen  442 LLERLGEVSFDDLIPELSETLTSEKSLVDR  471 (569)
T ss_pred             HHHHHHhhcccccccHHHHhhccchhhhhh
Confidence            999999 55532234444444444444333

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=8.3e-09  Score=121.56  Aligned_cols=264  Identities=14%  Similarity=0.139  Sum_probs=194.2

Q ss_pred             HHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhchh------
Q 002638           44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSEL------  113 (898)
Q Consensus        44 rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~--~s~k~~vRKeAIlLLG~IAEg~gd~------  113 (898)
                      ++++.|.+.  .|+..++.|-+.|+++..    ..|+.|+.+|.+-+  ...+...|..|++.|++....--..      
T Consensus         2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~   77 (859)
T KOG1241|consen    2 ELLELLEKTLSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ   77 (859)
T ss_pred             cHHHHHHHHcCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence            345666555  799999999999999886    25888888886654  3345779999999999875432211      


Q ss_pred             ------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC-HhHHHHHH
Q 002638          114 ------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-KGVQSGAA  186 (898)
Q Consensus       114 ------I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn-k~VQegAa  186 (898)
                            -..--.+|...|++.|+-|.|.++++|.-+++.+|..=+-      ...||.++..|.....+.. -.+.++++
T Consensus        78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP------~n~wp~li~~lv~nv~~~~~~~~k~~sl  151 (859)
T KOG1241|consen   78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP------QNQWPELIVTLVSNVGEEQASMVKESSL  151 (859)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence                  1234678999999999999999999999999999977632      2569999999999996544 45999999


Q ss_pred             HHHHHHHHhcC-CCCchhHHHHHHHHHHHhcC--CchhhHHHHHHH-HHHHHhccccC--cccHHHHHHHHHHhhCCCCH
Q 002638          187 MCMAKMVECAS-DPPVVAFQKLCARICKLLSN--QNFMAKASLLPV-VGSLSQVGAIA--PQSLEPLLQSIHECLGSTDW  260 (898)
Q Consensus       187 sALAkiIE~a~-d~~~~yL~~LlPRLlkLLks--~~~kaK~alL~a-IgSLA~vGa~~--~pyld~lLp~L~e~LsddDW  260 (898)
                      .||.=+||+.. +......+.++--++.-...  ++-.+|-+++.| ..++--.++.|  ..-.+-||+...+.-..+|-
T Consensus       152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~  231 (859)
T KOG1241|consen  152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE  231 (859)
T ss_pred             HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH
Confidence            99999999863 33334455555555544432  355667666655 34442222333  22334578888888899999


Q ss_pred             HHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH--HhhhcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638          261 ATRKAAADALSALALHSSNLVIDGATSTLTVL--EACRFDKIKPVRDSMNEALQLWKKIAGKV  321 (898)
Q Consensus       261 ~vRKaA~EaL~sLA~avge~L~Py~~~~I~~L--E~~RfDKvKpVRD~A~eALelWK~La~~~  321 (898)
                      .+|-+|.+||..|+...-+++.||+.+.+=.+  ...+- .++   ++|++++|||..|+...
T Consensus       232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~~d---eValQaiEFWsticeEE  290 (859)
T KOG1241|consen  232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-DND---EVALQAIEFWSTICEEE  290 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcH---HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998854433  34443 344   59999999999999653

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.92  E-value=1.9e-08  Score=116.15  Aligned_cols=224  Identities=15%  Similarity=0.161  Sum_probs=162.9

Q ss_pred             HHHcCCChh--HHHHHHHHHHHHHhcCCC----CC-----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh
Q 002638           48 SLSKLADRD--THQIAIEDLEKTIQTLSQ----ES-----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST  116 (898)
Q Consensus        48 ~L~KLsDrD--T~k~Aa~eLD~Ia~~L~p----e~-----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P  116 (898)
                      +|+-+.|.-  -+++++...++++..|+-    +.     +..+|.+++++..+.     .-.+-+|+++.-...-...|
T Consensus       526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-----~~il~~f~tv~vsl~~r~kp  600 (975)
T COG5181         526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-----GLILPCFSTVLVSLEFRGKP  600 (975)
T ss_pred             HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-----cEEEecccceeeehhhccCc
Confidence            344444332  567888888888877641    11     455555555444321     22344566665555556789


Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      ||+.|+++|+++|+.+.|.||..+++.+|.|+..+..++.   ...+..+=..|++.|++..+.|-.....|+..|.-..
T Consensus       601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e---~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~  677 (975)
T COG5181         601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE---TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH  677 (975)
T ss_pred             chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch---HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999955532   2446666678999999999998866555555555443


Q ss_pred             C-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHH
Q 002638          197 S-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS--IHECLGSTDWATRKAAADALSAL  273 (898)
Q Consensus       197 ~-d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~--L~e~LsddDW~vRKaA~EaL~sL  273 (898)
                      + .-..|-+..|+|+|.++|++.+-|+.+..+..+|.|...+....+.-+|.--|  |.+.|.+-+..+|++|.+++|.|
T Consensus       678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence            2 22335578899999999999999999999999999875443333333444333  67788998899999999999999


Q ss_pred             HHhcch
Q 002638          274 ALHSSN  279 (898)
Q Consensus       274 A~avge  279 (898)
                      +.++|+
T Consensus       758 s~aiGP  763 (975)
T COG5181         758 SRAIGP  763 (975)
T ss_pred             HhhcCH
Confidence            999994

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.92  E-value=9.1e-08  Score=118.76  Aligned_cols=241  Identities=19%  Similarity=0.215  Sum_probs=137.3

Q ss_pred             chhhhHhHHHHHHHHHHHHHcC---CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002638           31 SLSSHLAMVEMKQKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC  107 (898)
Q Consensus        31 ~~s~~~~~~eLK~rll~~L~KL---sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA  107 (898)
                      +.+-..+++.|..-.+..|...   .|.++|+.|++.|-.+-   +++.++.+.    ..+.+.++.+|..|+.+|+.+.
T Consensus       608 ~~~~~~~~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~~~~~~~L~----~aL~D~d~~VR~~Aa~aL~~l~  680 (897)
T PRK13800        608 PSPRILAVLALDAPSVAELAPYLADPDPGVRRTAVAVLTETT---PPGFGPALV----AALGDGAAAVRRAAAEGLRELV  680 (897)
T ss_pred             chHHHHHHHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhc---chhHHHHHH----HHHcCCCHHHHHHHHHHHHHHH
Confidence            3344466777766666555444   56779999998887664   343344444    3335678889999999888775


Q ss_pred             HHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH--------HHHhcccccCCc-hhHH-----hhHHHHHHH
Q 002638          108 ELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS--------KLYLNGKEENNG-TVVG-----LFVKPLFEA  173 (898)
Q Consensus       108 Eg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA--------~~lik~~~e~~~-~~~~-----~lL~pL~ea  173 (898)
                      +....         .+.+...|.|+++.||.+++.+|+.+.        ..+-++.. ... ....     .-.+.|..+
T Consensus       681 ~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~~~~l~~~  750 (897)
T PRK13800        681 EVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH-RVRIEAVRALVSVDDVESVAGA  750 (897)
T ss_pred             hccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH-HHHHHHHHHHhcccCcHHHHHH
Confidence            43221         123334445555555555555554431        00000000 000 0000     001234455


Q ss_pred             HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Q 002638          174 MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE  253 (898)
Q Consensus       174 L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e  253 (898)
                      +.+.++.|+.+|+.+|..+-....        .-++.|..++++++..+|.+++.+++.+-.  .      ..+.+.|..
T Consensus       751 l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~------~~~~~~l~~  814 (897)
T PRK13800        751 ATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGC--P------PDDVAAATA  814 (897)
T ss_pred             hcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c------chhHHHHHH
Confidence            566666666666666666543211        125667788888888888887777766411  1      123355777


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638          254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW  314 (898)
Q Consensus       254 ~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelW  314 (898)
                      .|.|+||.+|.+|+++|+.+..          ...+..|..+..|++..||..|..||.-|
T Consensus       815 aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        815 ALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            8888888888888888876531          22334444444588888888887777765

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.92  E-value=6.6e-08  Score=119.95  Aligned_cols=217  Identities=16%  Similarity=0.154  Sum_probs=145.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS  132 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp  132 (898)
                      .|.+.+..|+..|..+...+++  .+.++.+|    .++++.+|..++.+|+.+..+  +         ...+++.|+|+
T Consensus       664 ~d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~L----~~~d~~VR~~A~~aL~~~~~~--~---------~~~l~~~L~D~  726 (897)
T PRK13800        664 GAAAVRRAAAEGLRELVEVLPP--APALRDHL----GSPDPVVRAAALDVLRALRAG--D---------AALFAAALGDP  726 (897)
T ss_pred             CCHHHHHHHHHHHHHHHhccCc--hHHHHHHh----cCCCHHHHHHHHHHHHhhccC--C---------HHHHHHHhcCC
Confidence            3455788888888887664433  23333333    346789999999988876411  1         11345567777


Q ss_pred             ChHHHHHHHHHHHHHH------HHHhccc----------ccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          133 DSGMKEACRDSIGSLS------KLYLNGK----------EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       133 Ds~VR~Ac~~tLG~LA------~~lik~~----------~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      |+.||.+++.+|+.+-      ..+.++.          ...........++.|..++.+.++.|+..|+.+|..+-.. 
T Consensus       727 d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-  805 (897)
T PRK13800        727 DHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP-  805 (897)
T ss_pred             CHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-
Confidence            7777777777776531      1110000          0000000122356788888889999999999999888431 


Q ss_pred             CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       197 ~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a  276 (898)
                              +.+.+.++..|++++..+|..++.+++.+..         +..++.|..+|.|++|.+|+.|+.+|+.+   
T Consensus       806 --------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---  865 (897)
T PRK13800        806 --------PDDVAAATAALRASAWQVRQGAARALAGAAA---------DVAVPALVEALTDPHLDVRKAAVLALTRW---  865 (897)
T ss_pred             --------chhHHHHHHHhcCCChHHHHHHHHHHHhccc---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---
Confidence                    1244668889999999999988888876421         24558888999999999999999999986   


Q ss_pred             cchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       277 vge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                      -+      -...+..|.....|.+..||..|.+||+.
T Consensus       866 ~~------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        866 PG------DPAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CC------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            11      12345556666669999999999998863

>PRK09687 putative lyase; Provisional

Probab=98.92  E-value=3e-08  Score=107.91  Aligned_cols=194  Identities=13%  Similarity=0.065  Sum_probs=144.6

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (898)
Q Consensus        76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~  155 (898)
                      .+..++.+|.    +.+..+|..++.+|+.+-.          +.+++.+.+.++|+++.||.+++++||+|...-    
T Consensus        24 ~~~~L~~~L~----d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~----   85 (280)
T PRK09687         24 NDDELFRLLD----DHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK----   85 (280)
T ss_pred             cHHHHHHHHh----CCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----
Confidence            3556666664    6778999999999986643          566777888899999999999999999864311    


Q ss_pred             ccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638          156 EENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (898)
Q Consensus       156 ~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA  234 (898)
                           ......++.|... +.++++.|+..|+.+|..++....    .+...++..+..++.+++..+|..++.++|.+ 
T Consensus        86 -----~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-  155 (280)
T PRK09687         86 -----RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-  155 (280)
T ss_pred             -----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-
Confidence                 0023466667666 478899999999999999875332    12456777788888888888887766666543 


Q ss_pred             hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       235 ~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                        +      -+..++.|..+|.+++|.+|..|+.+|+.+...        -+.++..|.....|.+..||..|..+|..
T Consensus       156 --~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        156 --N------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             --C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence              1      135788999999999999999999999988221        12444555555579999999998888854

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.88  E-value=4.1e-08  Score=112.94  Aligned_cols=243  Identities=21%  Similarity=0.303  Sum_probs=155.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS  132 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp  132 (898)
                      .|-...+++.-.|..+... +++.+....+.|.....++++.+|-.|++.|+.++      ....++.+++.|.+.|.|+
T Consensus        54 ~~~~~Krl~yl~l~~~~~~-~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~~~  126 (526)
T PF01602_consen   54 KDLELKRLGYLYLSLYLHE-DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR------TPEMAEPLIPDVIKLLSDP  126 (526)
T ss_dssp             SSHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------ccchhhHHHHHHHHHhcCC
Confidence            5666888888888877763 34346667788877788999999999999998877      4445677899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcccccCCchhHHh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002638          133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI  211 (898)
Q Consensus       133 Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~-lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRL  211 (898)
                      ++.||..|+-++..+.....        +..+. +++.|...|.++++.|+.+|+.+|..+ ...++.....++.++.+|
T Consensus       127 ~~~VRk~A~~~l~~i~~~~p--------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L  197 (526)
T PF01602_consen  127 SPYVRKKAALALLKIYRKDP--------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRIL  197 (526)
T ss_dssp             SHHHHHHHHHHHHHHHHHCH--------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhccCH--------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHh
Confidence            99999999999999998862        22444 789999999999999999999999998 222211115667777777


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHHhcc-----------------------------------ccCcccHHHHHHHHHHhhC
Q 002638          212 CKLLSNQNFMAKASLLPVVGSLSQVG-----------------------------------AIAPQSLEPLLQSIHECLG  256 (898)
Q Consensus       212 lkLLks~~~kaK~alL~aIgSLA~vG-----------------------------------a~~~pyld~lLp~L~e~Ls  256 (898)
                      ..++..++.-.+..++.++..++...                                   ....+.+..+++.|..+|.
T Consensus       198 ~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~  277 (526)
T PF01602_consen  198 CQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS  277 (526)
T ss_dssp             HHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT
T ss_pred             hhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh
Confidence            77766665544444444333322110                                   0011234455555556666


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638          257 STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       257 ddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La  318 (898)
                      +.+..+|-.++++|..|+...++.+. +..-   .+..+++|.+..||..   +|++...++
T Consensus       278 s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~---~~~~l~~~~d~~Ir~~---~l~lL~~l~  332 (526)
T PF01602_consen  278 SSDPNVRYIALDSLSQLAQSNPPAVF-NQSL---ILFFLLYDDDPSIRKK---ALDLLYKLA  332 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHCCHCHHHHG-THHH---HHHHHHCSSSHHHHHH---HHHHHHHH-
T ss_pred             cccchhehhHHHHHHHhhcccchhhh-hhhh---hhheecCCCChhHHHH---HHHHHhhcc
Confidence            66666666666666555555432222 2111   2234444555544443   444444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=2.9e-07  Score=108.39  Aligned_cols=229  Identities=19%  Similarity=0.219  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHH
Q 002638           60 IAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEA  139 (898)
Q Consensus        60 ~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~A  139 (898)
                      +|+..|-.|+.   |+.-.-+-.-+..-+++.+|++||-||++|=-+..-|++.+.|-+|++    ...|.||||.|.+|
T Consensus       128 iAL~GLS~fvT---pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SA  200 (877)
T KOG1059|consen  128 LALSGLSCIVT---PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSA  200 (877)
T ss_pred             heecccccccC---chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHH
Confidence            44444444443   433223333344445688999999999999999999999999988765    56899999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh--cCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhc
Q 002638          140 CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM--EQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLS  216 (898)
Q Consensus       140 c~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~--eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLk  216 (898)
                      |+.+|-.||+.-.+.        +-.+-|-+|..|.  .+|+..--     |-++.-. =.+..|-|. +|+|.|+.+++
T Consensus       201 AV~VICELArKnPkn--------yL~LAP~ffkllttSsNNWmLIK-----iiKLF~a-LtplEPRLgKKLieplt~li~  266 (877)
T KOG1059|consen  201 AVSVICELARKNPQN--------YLQLAPLFYKLLVTSSNNWVLIK-----LLKLFAA-LTPLEPRLGKKLIEPITELME  266 (877)
T ss_pred             HHHHHHHHHhhCCcc--------cccccHHHHHHHhccCCCeehHH-----HHHHHhh-ccccCchhhhhhhhHHHHHHH
Confidence            999999999887433        3346667777773  45654321     1111111 123345444 69999999998


Q ss_pred             CCchhhHHHHHHHHHHHHhcc--ccC---cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHH
Q 002638          217 NQNFMAKASLLPVVGSLSQVG--AIA---PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTV  291 (898)
Q Consensus       217 s~~~kaK~alL~aIgSLA~vG--a~~---~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~  291 (898)
                      +.  -+...+|+||++++.+.  ...   ...+..+++.|..++.++|..+|=-.|-||+.|+...+..+..|.+=+++.
T Consensus       267 sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrc  344 (877)
T KOG1059|consen  267 ST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRC  344 (877)
T ss_pred             hh--HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHH
Confidence            54  45678999999997653  222   334556677788889999999999999999999999999888888777766


Q ss_pred             HHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638          292 LEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       292 LE~~RfDKvKpVRD~A~eALelWK~La  318 (898)
                      |.    |++..+|-   +||++.-++.
T Consensus       345 L~----DkD~SIRl---rALdLl~gmV  364 (877)
T KOG1059|consen  345 LD----DKDESIRL---RALDLLYGMV  364 (877)
T ss_pred             hc----cCCchhHH---HHHHHHHHHh
Confidence            55    99998774   6888876665

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.4e-07  Score=109.19  Aligned_cols=253  Identities=14%  Similarity=0.188  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc
Q 002638           40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS  111 (898)
Q Consensus        40 eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L--------~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g  111 (898)
                      ....+++.+|..-.+...+--|+=.|-.|+..-        +...+|.|+.+|.    ++...+|+.|+-+||++|--..
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~  184 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSP  184 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCCh
Confidence            456677777776666667777777888888621        2333777676666    6778999999999999986543


Q ss_pred             ---hhchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638          112 ---ELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM  187 (898)
Q Consensus       112 ---d~I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas  187 (898)
                         +.+..  ..++..++..|..+++ .....+.|+|..|++.- .|.  ..-+.+..+|+.|+..|...++.|..=||.
T Consensus       185 ~~Rd~vl~--~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk-~P~--P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W  259 (514)
T KOG0166|consen  185 DCRDYVLS--CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK-NPS--PPFDVVAPILPALLRLLHSTDEEVLTDACW  259 (514)
T ss_pred             HHHHHHHh--hcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-CCC--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence               33332  3456677777777775 44455679999999887 332  223668889999999999999999999999


Q ss_pred             HHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cCccc-HHHHHHHHHHhhC-CCCHHHH
Q 002638          188 CMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IAPQS-LEPLLQSIHECLG-STDWATR  263 (898)
Q Consensus       188 ALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa-~~~py-ld~lLp~L~e~Ls-ddDW~vR  263 (898)
                      ||.-+.+...+.+...++ .+||+|+++|.++..+++..+|-+||-++...+ ..... -...+|+|..+|+ +..-.+|
T Consensus       260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik  339 (514)
T KOG0166|consen  260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK  339 (514)
T ss_pred             HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence            999999887665554555 599999999999999999889999999653222 11111 2257888889988 4556699


Q ss_pred             HHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCCh
Q 002638          264 KAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIK  301 (898)
Q Consensus       264 KaA~EaL~sLA~avge~L~Py-----~~~~I~~LE~~RfDKvK  301 (898)
                      |.||=+|+.|+..-.+.+.-.     ++.+|+.|+..-||--|
T Consensus       340 kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK  382 (514)
T KOG0166|consen  340 KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK  382 (514)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence            999999999999666555533     47778888877777555

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.76  E-value=1.7e-07  Score=107.78  Aligned_cols=225  Identities=20%  Similarity=0.199  Sum_probs=147.8

Q ss_pred             HHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHH
Q 002638           47 TSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH  124 (898)
Q Consensus        47 ~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~  124 (898)
                      .....+  .+.-.+..|+..|-.+.   .++.++.+++.|.....+++|.+||.|++++..+.+.+++.+.+.   +++.
T Consensus        83 ~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~  156 (526)
T PF01602_consen   83 SLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPK  156 (526)
T ss_dssp             HHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHH
T ss_pred             HHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHH
Confidence            333445  34447778888887777   466788888888888889999999999999999999988876654   5788


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH---------------------------------------h
Q 002638          125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG---------------------------------------L  165 (898)
Q Consensus       125 IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~---------------------------------------~  165 (898)
                      +.+.|.|+++.|+.+|+.++..+  .......   ...++                                       .
T Consensus       157 l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~---~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~  231 (526)
T PF01602_consen  157 LKQLLSDKDPSVVSAALSLLSEI--KCNDDSY---KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNR  231 (526)
T ss_dssp             HHHHTTHSSHHHHHHHHHHHHHH--HCTHHHH---TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHH
T ss_pred             HhhhccCCcchhHHHHHHHHHHH--ccCcchh---hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHH
Confidence            88889999999999999988887  1100000   01122                                       2


Q ss_pred             hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH
Q 002638          166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE  245 (898)
Q Consensus       166 lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld  245 (898)
                      ++..+...|...++.|...++.++..+..     ..+++..+++.|.++|.+++.-+|-.+|.+|..++.   ..++.+.
T Consensus       232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-----~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~---~~~~~v~  303 (526)
T PF01602_consen  232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSP-----SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ---SNPPAVF  303 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC---HCHHHHG
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhhc-----chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc---ccchhhh
Confidence            33333333333333444333333332222     112677889999999998888888888888888754   2244554


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH
Q 002638          246 PLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVL  292 (898)
Q Consensus       246 ~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~L  292 (898)
                      ..-..++-+..++|..+|+.++++|..++..  ..+...+..+++++
T Consensus       304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~Il~eL~~~l  348 (526)
T PF01602_consen  304 NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNVKEILDELLKYL  348 (526)
T ss_dssp             THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHH
T ss_pred             hhhhhhheecCCCChhHHHHHHHHHhhcccc--cchhhHHHHHHHHH
Confidence            3333344444589999999999999998863  44455555555555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=8.5e-07  Score=102.43  Aligned_cols=256  Identities=15%  Similarity=0.155  Sum_probs=188.9

Q ss_pred             hHHHHHHHHHHHHHhcCCC----CCHHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc
Q 002638           56 DTHQIAIEDLEKTIQTLSQ----ESLPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK  130 (898)
Q Consensus        56 DT~k~Aa~eLD~Ia~~L~p----e~Lp~fLs~L-~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk  130 (898)
                      +-|+.|+.+|++++.++..    +.+.-++..| -+...+.....||.++..+.+++-+.+....+|+.+|++-|+.++.
T Consensus        15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~   94 (675)
T KOG0212|consen   15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS   94 (675)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence            4689999999999998732    2377777744 4666778888899888888888888887777799999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHHHH
Q 002638          131 DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQKLC  208 (898)
Q Consensus       131 DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~-yL~~Ll  208 (898)
                      |+|..||--+|+++-.++..+-...    -.+++.+...|.....+.+..|+.| +.-|.+++.++..... . -|+.++
T Consensus        95 D~d~~vRyyACEsLYNiaKv~k~~v----~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~i  169 (675)
T KOG0212|consen   95 DQDSQVRYYACESLYNIAKVAKGEV----LVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFI  169 (675)
T ss_pred             CccceeeeHhHHHHHHHHHHhccCc----ccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHH
Confidence            9999999999999999998883221    1345556666666667888888864 5568999887633222 2 377777


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h-HHHhhH
Q 002638          209 ARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N-LVIDGA  285 (898)
Q Consensus       209 PRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e-~L~Py~  285 (898)
                      |-|-.-+...+..+|..+++-|..+-.+- -.+..|++.+++.|+.+|+|+...+|..+=-+|+.....+. + ... -.
T Consensus       170 pLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~  248 (675)
T KOG0212|consen  170 PLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DY  248 (675)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-Cc
Confidence            77777777777788889999888874433 34678999999999999999999999888777887766665 1 111 23


Q ss_pred             HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          286 TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       286 ~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      .+.++++-.-..-..+..+..   ||.-..+|..-
T Consensus       249 ~~~i~vlv~~l~ss~~~iq~~---al~Wi~efV~i  280 (675)
T KOG0212|consen  249 DDMINVLVPHLQSSEPEIQLK---ALTWIQEFVKI  280 (675)
T ss_pred             ccchhhccccccCCcHHHHHH---HHHHHHHHhcC
Confidence            566666665555566645544   44444444433

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=2.3e-06  Score=98.97  Aligned_cols=277  Identities=16%  Similarity=0.136  Sum_probs=215.9

Q ss_pred             HHHHHHHHHHHHHcC-CChh-HHHHHHHHHHHHHhcCCC-CC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 002638           38 MVEMKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTLSQ-ES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH  110 (898)
Q Consensus        38 ~~eLK~rll~~L~KL-sDrD-T~k~Aa~eLD~Ia~~L~p-e~----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~  110 (898)
                      .+-....+..+|-|+ +|.| .-+-|++-||++++.+.. +.    ++.|++.|-+.+...++..|..-+.-|..+=..-
T Consensus       119 v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P  198 (675)
T KOG0212|consen  119 VLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP  198 (675)
T ss_pred             cccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Confidence            344455666677777 4444 677899999999988632 22    8999999999988889999999988886665544


Q ss_pred             chhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHH
Q 002638          111 SELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMA  190 (898)
Q Consensus       111 gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALA  190 (898)
                      .-.+..|+|.+++-+...|.|+...||..|-.+++.+-..+-..+ .  .-.......-|..-++++++..|..|..=+.
T Consensus       199 ~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P-~--s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~  275 (675)
T KOG0212|consen  199 DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP-S--SMDYDDMINVLVPHLQSSEPEIQLKALTWIQ  275 (675)
T ss_pred             cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-c--ccCcccchhhccccccCCcHHHHHHHHHHHH
Confidence            445888999999999999999999999999999999999884321 1  1135566777777888899999999988888


Q ss_pred             HHHHhcCCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHH---HHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHH
Q 002638          191 KMVECASDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVV---GSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKA  265 (898)
Q Consensus       191 kiIE~a~d~~~~yL~~LlPRLlkLLks~~~k-aK~alL~aI---gSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKa  265 (898)
                      .|+.-.+.....|+..++-.+++++.+...+ +|..+-..-   .++.... ..-.--+..+|..|...++++.-.+|.+
T Consensus       276 efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~  355 (675)
T KOG0212|consen  276 EFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIA  355 (675)
T ss_pred             HHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHH
Confidence            8887777878889999999999999886554 554333333   2332111 0111234589999999999999999999


Q ss_pred             HHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          266 AADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       266 A~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      |.+=+..|-...|..+--|..++-..|....-|...   +++..+|++...|+..
T Consensus       356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS  407 (675)
T ss_pred             HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence            999999999999966666999998888888889888   8899999999999944

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=7.6e-07  Score=111.19  Aligned_cols=226  Identities=12%  Similarity=0.127  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHH
Q 002638           60 IAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE  138 (898)
Q Consensus        60 ~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~  138 (898)
                      ...+||=.+|..|+..+ +--||..   ...+.-|..|+-|-.-||+|++-.++.+.||+++++|-+.|-==||+..|++
T Consensus       940 sTYKELc~LASdl~qPdLVYKFM~L---Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~ 1016 (1702)
T KOG0915|consen  940 STYKELCNLASDLGQPDLVYKFMQL---ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD 1016 (1702)
T ss_pred             hHHHHHHHHHhhcCChHHHHHHHHH---hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH
Confidence            45789999999886434 4344432   2345679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcC
Q 002638          139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSN  217 (898)
Q Consensus       139 Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d-~~~~yL~~LlPRLlkLLks  217 (898)
                      +-...=++|...- +..   .+.++.++++-|+..|.+...+|.+++|.||.-+++.-+. .+.+.+++|-..++...++
T Consensus      1017 aM~sIW~~Li~D~-k~~---vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD 1092 (1702)
T KOG0915|consen 1017 AMTSIWNALITDS-KKV---VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD 1092 (1702)
T ss_pred             HHHHHHHHhccCh-HHH---HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence            9887777766543 111   2467888999999999999999999999999999997432 3335677777777777776


Q ss_pred             CchhhHHH---HHHHHHHHH-hcc-----ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHH
Q 002638          218 QNFMAKAS---LLPVVGSLS-QVG-----AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDGATS  287 (898)
Q Consensus       218 ~~~kaK~a---lL~aIgSLA-~vG-----a~~~pyld~lLp~L~e~-LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~  287 (898)
                      =+.-+|.+   +..+|+.+. .++     +.....++.++|+|.+- ..++-..+|+.++-++..|+...|..+.||++.
T Consensus      1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence            55566665   444555552 222     34567889999998863 447889999999999999999999999999888


Q ss_pred             HHHHH
Q 002638          288 TLTVL  292 (898)
Q Consensus       288 ~I~~L  292 (898)
                      +|..|
T Consensus      1173 LIp~l 1177 (1702)
T KOG0915|consen 1173 LIPLL 1177 (1702)
T ss_pred             HHHHH
Confidence            77654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.60  E-value=1.3e-06  Score=90.70  Aligned_cols=174  Identities=16%  Similarity=0.204  Sum_probs=127.5

Q ss_pred             CChhHHHHHHHHHHHHHhcC-CCCCHHHHHH-------HHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTL-SQESLPMLLN-------CLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH  124 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L-~pe~Lp~fLs-------~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~  124 (898)
                      .|=+.+.-|+..|..++..- +.+..+.|+.       .|.....+..+.+-+.|+.+++.++...+..+.||++.++|.
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~   98 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP   98 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            45568889999999998754 2233444444       444556777888999999999999999999999999999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh-HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC---CCC
Q 002638          125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-VKPLFEAMMEQNKGVQSGAAMCMAKMVECAS---DPP  200 (898)
Q Consensus       125 IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l-L~pL~eaL~eqnk~VQegAasALAkiIE~a~---d~~  200 (898)
                      |++++.|+...||.+|..+|..|+.++.         ..+.+ +..+...+.+.|+.+...++.+|..+++..+   ...
T Consensus        99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   99 LLKKLGDSKKFIREAANNALDAIIESCS---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHGGG---HHHHHHHHHHHHHHHTTS----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHCC---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            9999999999999999999999999881         12334 6666667788999999999999999999876   111


Q ss_pred             c--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638          201 V--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       201 ~--~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~  235 (898)
                      .  ..++.+++-+.+++.+++..+|.++-.++..+..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1  2468899999999999999999998888888753

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.57  E-value=4.8e-06  Score=108.91  Aligned_cols=254  Identities=17%  Similarity=0.128  Sum_probs=173.4

Q ss_pred             CCChhHHHHHHHHHHHHHhc-------C-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh---chhhHHH
Q 002638           52 LADRDTHQIAIEDLEKTIQT-------L-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---TSTHVTK  120 (898)
Q Consensus        52 LsDrDT~k~Aa~eLD~Ia~~-------L-~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~---I~PhLpk  120 (898)
                      ..+.|.+..++..|..+...       + ....++.++.+|.    +.+..+++.++.+|++++.+..+.   +..  .-
T Consensus       415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~----s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aG  488 (2102)
T PLN03200        415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG----LSSEQQQEYAVALLAILTDEVDESKWAITA--AG  488 (2102)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CC
Confidence            35678999988888777642       1 1223555555554    566889999999999999866543   222  35


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhH--HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002638          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD  198 (898)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~--~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d  198 (898)
                      .+|.+++.|..+++.++..|+|+|+.|+.+--+     ....+  ...++||++.|...++.+|.-|+.+|..++.....
T Consensus       489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q-----ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~  563 (2102)
T PLN03200        489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSED-----IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA  563 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence            678888899999999999999999999863200     11112  24788999999888999999999999999754311


Q ss_pred             CCc-hh------------------H-------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-cc
Q 002638          199 PPV-VA------------------F-------------------QKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AI  239 (898)
Q Consensus       199 ~~~-~y------------------L-------------------~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~  239 (898)
                      ... ++                  |                   +.-+|.|..+|++++...|..+..+|..++... ..
T Consensus       564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~  643 (2102)
T PLN03200        564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL  643 (2102)
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence            100 00                  0                   124678888888888777877777777776422 11


Q ss_pred             -CcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch-HHHhh-HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002638          240 -APQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN-LVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (898)
Q Consensus       240 -~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge-~L~Py-~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~  316 (898)
                       -.-.....+|+|...|.+.+..+|+.|+.+|+.++....+ ...-+ ...+|+.|-....+....+++.+.+||...-.
T Consensus       644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~  723 (2102)
T PLN03200        644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS  723 (2102)
T ss_pred             HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence             1223446788899999999999999999999999974442 22222 23466666666667777677776666655443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.55  E-value=4.6e-07  Score=84.38  Aligned_cols=93  Identities=17%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638           95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM  174 (898)
Q Consensus        95 vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL  174 (898)
                      .|+.++..|..++.+.+..+.+|+++|++.|+..+.|+|+.||-.+|+++..++...-..    .-.++.+++..|+..+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYFNEIFDALCKLS   77 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999999888322    1245677777777777


Q ss_pred             hcCCHhHHHHHHHHHHHH
Q 002638          175 MEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       175 ~eqnk~VQegAasALAki  192 (898)
                      .|.++.||.||.. |.++
T Consensus        78 ~D~d~~Vr~~a~~-Ld~l   94 (97)
T PF12755_consen   78 ADPDENVRSAAEL-LDRL   94 (97)
T ss_pred             cCCchhHHHHHHH-HHHH
Confidence            8999999998754 4443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.49  E-value=2.6e-05  Score=94.46  Aligned_cols=237  Identities=14%  Similarity=0.145  Sum_probs=183.4

Q ss_pred             HHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           77 LPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        77 Lp~fLs~L~es~--~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      ++.|++.+.+.+  +.+...+|=+++-.++.+...+|+.+.++=..|+-+++..|.-+...||.-++.+||.|+..+-  
T Consensus       129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~--  206 (1233)
T KOG1824|consen  129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN--  206 (1233)
T ss_pred             HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--
Confidence            555666665554  3455668889999999999999999999999999999999999999999999999999999982  


Q ss_pred             cccCCchhHHhhHHHHHHHHhcCCHh-HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh---cCCchhhHHHHHHHH
Q 002638          155 KEENNGTVVGLFVKPLFEAMMEQNKG-VQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL---SNQNFMAKASLLPVV  230 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~eqnk~-VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLL---ks~~~kaK~alL~aI  230 (898)
                           ...+..+..-|+..|...... .--.-..||+.+|..++...-.++++++|-+....   +..+-..|+.+|.++
T Consensus       207 -----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal  281 (1233)
T KOG1824|consen  207 -----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL  281 (1233)
T ss_pred             -----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence                 245667777777777554333 33568899999999998888888999999999888   666788899999999


Q ss_pred             HHHHhcc-ccCcccHHHHHHHHHHhhC-------------------C-------------C--CHHHHHHHHHHHHHHHH
Q 002638          231 GSLSQVG-AIAPQSLEPLLQSIHECLG-------------------S-------------T--DWATRKAAADALSALAL  275 (898)
Q Consensus       231 gSLA~vG-a~~~pyld~lLp~L~e~Ls-------------------d-------------d--DW~vRKaA~EaL~sLA~  275 (898)
                      +++..-. ....||.+.++.-++++++                   +             +  .|.+|++|+.||.++-.
T Consensus       282 e~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is  361 (1233)
T KOG1824|consen  282 ESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS  361 (1233)
T ss_pred             HHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence            9997544 4567788888887766541                   0             1  29999999999999999


Q ss_pred             hcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH-HHHHHhhcC
Q 002638          276 HSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL-QLWKKIAGK  320 (898)
Q Consensus       276 avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL-elWK~La~~  320 (898)
                      ...+.+..+...+=.++-..-.++-+.|+--+.+++ .++++.+.+
T Consensus       362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~  407 (1233)
T KOG1824|consen  362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV  407 (1233)
T ss_pred             ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence            988888777766666666555566666775555554 455565554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=3.6e-06  Score=97.78  Aligned_cols=261  Identities=16%  Similarity=0.120  Sum_probs=181.8

Q ss_pred             CChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIIS  123 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L--------~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~  123 (898)
                      .+.+.+.+|+-.|-.|+..-        ....+.++|..|....   +-...+.+.-+|.++|++.. -.....+..++|
T Consensus       164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~---~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp  240 (514)
T KOG0166|consen  164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD---KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP  240 (514)
T ss_pred             CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc---chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            45668888888888777531        2334666666666333   23567788889999999874 334567999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc-hhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG-TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (898)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~-~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~  202 (898)
                      .|.+.|.+.|+.|..=+||+|.-|+..--+    ..+ -.-..+++.|.+.|......++..|..++-.|+-+.+.+...
T Consensus       241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne----~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~  316 (514)
T KOG0166|consen  241 ALLRLLHSTDEEVLTDACWALSYLTDGSNE----KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV  316 (514)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChH----HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence            999999999999999999999877744311    111 112237788999999999999999999888877665544444


Q ss_pred             hHH-HHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638          203 AFQ-KLCARICKLLS-NQNFMAKASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHS  277 (898)
Q Consensus       203 yL~-~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~vG--a~~~pyld-~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av  277 (898)
                      .++ .++|.|..+|. ++.-.+|..+.=.|+=|. +|  ......++ .++|.|..+|...+..+||.|+=+++.++..-
T Consensus       317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt-AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g  395 (514)
T KOG0166|consen  317 VINSGALPVLSNLLSSSPKESIKKEACWTISNIT-AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG  395 (514)
T ss_pred             HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence            444 58899999998 565555554444444443 24  22332333 68999999999999999999999999987766


Q ss_pred             chHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638          278 SNLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV  321 (898)
Q Consensus       278 ge~L~Py~--~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~~  321 (898)
                      -..-..|+  ..||+.|-....=++..+-.+++.+|+....++..+
T Consensus       396 ~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~  441 (514)
T KOG0166|consen  396 TPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE  441 (514)
T ss_pred             CHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence            65555575  446776654443333333567788888888777553

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.47  E-value=1.5e-05  Score=96.43  Aligned_cols=224  Identities=16%  Similarity=0.171  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHH-HHHHHHhchhchh
Q 002638           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLL-ALVCELHSELTST  116 (898)
Q Consensus        39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKe-AIlLL-G~IAEg~gd~I~P  116 (898)
                      .+++.-++.+|+--. .|..+.|...|-.++-  +  .++.||++|++...++  +.|++ -+..| .+|.....+.+.|
T Consensus       856 ~e~~~~iieaf~sp~-edvksAAs~ALGsl~v--g--nl~~yLpfil~qi~sq--pk~QyLLLhSlkevi~~~svd~~~~  928 (1233)
T KOG1824|consen  856 NELKDTIIEAFNSPS-EDVKSAASYALGSLAV--G--NLPKYLPFILEQIESQ--PKRQYLLLHSLKEVIVSASVDGLKP  928 (1233)
T ss_pred             hhhHHHHHHHcCCCh-HHHHHHHHHHhhhhhc--C--chHhHHHHHHHHHhcc--hHhHHHHHHHHHHHHHHhccchhhh
Confidence            355556666665443 6688888888877775  2  4788999998887442  22333 22233 3344445577899


Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      +.++|+..+.+...-.+-.+|+..++++|.|+-.=  +         ..+++.|-..+....+.....+..|.-=.+-+-
T Consensus       929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e--p---------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~  997 (1233)
T KOG1824|consen  929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE--P---------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ  997 (1233)
T ss_pred             hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC--h---------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence            99999999999999999999999999999987433  2         347778888887666666666666655445444


Q ss_pred             CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHh------------------hCC
Q 002638          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHEC------------------LGS  257 (898)
Q Consensus       197 ~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~------------------Lsd  257 (898)
                      +..+.+|+.+-+..+++++++|+.++|..+|.+++|++.-. ......++.++|.|.+-                  ..|
T Consensus       998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VD 1077 (1233)
T KOG1824|consen  998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVD 1077 (1233)
T ss_pred             CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccccc
Confidence            55666899999999999999999999999999999988544 34455666777765432                  235


Q ss_pred             CCHHHHHHHHHHHHHHHHhcchH
Q 002638          258 TDWATRKAAADALSALALHSSNL  280 (898)
Q Consensus       258 dDW~vRKaA~EaL~sLA~avge~  280 (898)
                      +-..+||+|.||++++...-=+.
T Consensus      1078 dgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1078 DGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhh
Confidence            67899999999999998876543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.47  E-value=1.4e-05  Score=104.66  Aligned_cols=256  Identities=15%  Similarity=0.194  Sum_probs=184.2

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhh---HHHHHHHHHHh
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTH---VTKIISHIVKR  128 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~Ph---LpkIL~~Ilrr  128 (898)
                      +|.++++.|+..|-.++..-+.+.++.++..|.    ++++..+..++.+||.+....... +...   -...++.|+..
T Consensus       542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L  617 (2102)
T PLN03200        542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL  617 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence            678899999999999987555555766665543    456788888999999997754432 1111   13578899999


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC-chhHHH-
Q 002638          129 LKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP-VVAFQK-  206 (898)
Q Consensus       129 LkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~-~~yL~~-  206 (898)
                      |+.++..++..|+|+|..|+..-.+..   ..-.....++||+..|...+..++..||.||..+..+....- ..++.. 
T Consensus       618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~---~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G  694 (2102)
T PLN03200        618 LSSSKEETQEKAASVLADIFSSRQDLC---ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED  694 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCChHHH---HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence            999999999999999999986331110   001234578999999998899999999999999997553322 233443 


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh
Q 002638          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVID  283 (898)
Q Consensus       207 LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~-~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~P  283 (898)
                      .+|.|+++|++++..++..++.+|..++..+... .-.-...++.|.++|.+.+...|+.|+-+|..|+...+  +.|..
T Consensus       695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~  774 (2102)
T PLN03200        695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD  774 (2102)
T ss_pred             CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            7899999999999999999999999998654111 11123558999999999999999999999999999988  55766


Q ss_pred             hHHHH------HHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          284 GATST------LTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       284 y~~~~------I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      |+..+      +.+|...-+|.+.     ..+||+....++..
T Consensus       775 ~~~~~g~v~~l~~~L~~~~~~~~~-----~~~al~~l~~l~~~  812 (2102)
T PLN03200        775 SVQCRGTVLALVDLLNSTDLDSSA-----TSEALEALALLART  812 (2102)
T ss_pred             HHHHhCcHHHHHHHHhcCCcchhh-----HHHHHHHHHHHHhh
Confidence            65444      3344444443322     23566666666654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.46  E-value=1.4e-07  Score=77.72  Aligned_cols=55  Identities=22%  Similarity=0.401  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 002638           93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSL  147 (898)
Q Consensus        93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~L  147 (898)
                      |.+|+.|+.+||.+++.+++.+.||++++++.++..|+|+++.||.+|+++||+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999975

...

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.45  E-value=3.2e-05  Score=90.78  Aligned_cols=262  Identities=16%  Similarity=0.213  Sum_probs=177.5

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhH--HHH
Q 002638           45 ILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV--TKI  121 (898)
Q Consensus        45 ll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhL--pkI  121 (898)
                      +..||+. .+++....+...|+.+...+.+.. ++.+.+.|...+.++++.+|+-++..++.+++.. +....-+  ..+
T Consensus        43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l  120 (503)
T PF10508_consen   43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNEL  120 (503)
T ss_pred             HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccH
Confidence            4455553 478888899999999999887765 8889999999899999999999999999988643 3322222  568


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP  200 (898)
Q Consensus       122 L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~-~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~  200 (898)
                      ++.|+..|.|+|..|..+|..+|..|+.+-  .+.   ...++ .++..|...+...+..+.--+..++..+....++. 
T Consensus       121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~---~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~-  194 (503)
T PF10508_consen  121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGL---EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA-  194 (503)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhH---HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH-
Confidence            999999999999999999999999998743  111   01111 12455555555557777766666666665433222 


Q ss_pred             chhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH--HHHHHHHHhhCC----C-CHHHH-HHHHHHH
Q 002638          201 VVAFQK--LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE--PLLQSIHECLGS----T-DWATR-KAAADAL  270 (898)
Q Consensus       201 ~~yL~~--LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld--~lLp~L~e~Lsd----d-DW~vR-KaA~EaL  270 (898)
                      ..+...  +++++++.|++++.-+|..+++++..++... ....|+.  .+++.|.+.+.+    + --.+. -..+..+
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            234443  8999999999999999999999999997521 1122222  244555555443    3 11112 1223566


Q ss_pred             HHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638          271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       271 ~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La  318 (898)
                      +.|+...+..+....+.++..+..+-...+...+.+   |++.|..|+
T Consensus       274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~---A~dtlg~ig  318 (503)
T PF10508_consen  274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREV---AFDTLGQIG  318 (503)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHH---HHHHHHHHh
Confidence            677777554444444667777776655666766776   677777777

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.42  E-value=3.3e-05  Score=88.34  Aligned_cols=224  Identities=14%  Similarity=0.185  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhchhc
Q 002638           37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQE-SLPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELT  114 (898)
Q Consensus        37 ~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe-~Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~gd~I  114 (898)
                      .+.++.++++.......+...+..+++.|-.+++.++.+ .+..+|..+.... .......|..++.++.-++.+.--.-
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            455677888888777777778888888888888877544 3777777777665 45567778888888877777655444


Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE  194 (898)
                      .|.-.+++..++..|.|  +.+...++.+++.|.... +....   ..+...+++|+.                      
T Consensus       266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~-~~~l~---~~~~a~vklLyk----------------------  317 (415)
T PF12460_consen  266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDS-DDVLN---KENHANVKLLYK----------------------  317 (415)
T ss_pred             CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc-HHhcC---ccccchhhhHHh----------------------
Confidence            56666667777777766  556666666666555543 10000   001111111110                      


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002638          195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (898)
Q Consensus       195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~s  272 (898)
                            .-++..++|+|+..++..+...|...|.++..+.. +- ....++++.++|-|++.|.-+|..+|.+++++|..
T Consensus       318 ------QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~  391 (415)
T PF12460_consen  318 ------QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM  391 (415)
T ss_pred             ------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                  13577899999999988776688888889888864 44 66789999999999999999999999999999999


Q ss_pred             HHHhcchHHHhhHHHHHHHHHh
Q 002638          273 LALHSSNLVIDGATSTLTVLEA  294 (898)
Q Consensus       273 LA~avge~L~Py~~~~I~~LE~  294 (898)
                      +...-++.+.+|+..+|..|..
T Consensus       392 ~l~~~~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  392 ILEEAPELISEHLSSLIPRLLK  413 (415)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999997753

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.40  E-value=5e-05  Score=88.28  Aligned_cols=268  Identities=18%  Similarity=0.190  Sum_probs=189.0

Q ss_pred             HHHHHHHH-HHHcC--CChhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhc-hh
Q 002638           40 EMKQKILT-SLSKL--ADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHS-EL  113 (898)
Q Consensus        40 eLK~rll~-~L~KL--sDrDT~k~Aa~eLD~Ia~~-L~pe~Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~g-d~  113 (898)
                      |.|++|-. +|+-|  .......+|++.|..|+.- |+....|.|+..+..+. ..+....+.+++..+|++|+.-. +.
T Consensus        90 E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~  169 (858)
T COG5215          90 ESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED  169 (858)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH
Confidence            44555443 33333  3344677888999999864 77777999998887765 45556789999999999999865 45


Q ss_pred             chhhHHHHHHHHHHh-hcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVKR-LKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK  191 (898)
Q Consensus       114 I~PhLpkIL~~Ilrr-LkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAk  191 (898)
                      +...-.-|+-.|+.+ ++. +++.||-|+..++..-...+ +..+.. +....-|+.-..++-..++..+|.+|+.||-|
T Consensus       170 li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv-~~nf~~-E~erNy~mqvvceatq~~d~e~q~aafgCl~k  247 (858)
T COG5215         170 LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV-QGNFCY-EEERNYFMQVVCEATQGNDEELQHAAFGCLNK  247 (858)
T ss_pred             HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HHhhcc-hhhhchhheeeehhccCCcHHHHHHHHHHHHH
Confidence            555555666666655 443 67899999988877643333 221211 12245567777788788899999999999999


Q ss_pred             HHHhcCCCCchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHh----cc---ccCc-----------ccHHHHHHHHH
Q 002638          192 MVECASDPPVVAFQK-LCARICKLLSNQNFMAKASLLPVVGSLSQ----VG---AIAP-----------QSLEPLLQSIH  252 (898)
Q Consensus       192 iIE~a~d~~~~yL~~-LlPRLlkLLks~~~kaK~alL~aIgSLA~----vG---a~~~-----------pyld~lLp~L~  252 (898)
                      +.---.+.+.+|+.+ |...+...+++++.+++-.+++.-+++..    +.   +.++           ..+..++|.|+
T Consensus       248 im~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL  327 (858)
T COG5215         248 IMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELL  327 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHH
Confidence            986544444567776 45566677899999999888888777641    11   1222           22556899998


Q ss_pred             HhhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002638          253 ECLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ  312 (898)
Q Consensus       253 e~Lsd-------dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALe  312 (898)
                      ..|..       +||..-++|.-||--.|...|+++.   .+++...|..-....-.-||++.-|+.
T Consensus       328 ~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~---~pVl~FvEqni~~~~w~nreaavmAfG  391 (858)
T COG5215         328 SLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM---RPVLGFVEQNIRSESWANREAAVMAFG  391 (858)
T ss_pred             HHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH---HHHHHHHHHhccCchhhhHHHHHHHhh
Confidence            88753       7899999999999999999997654   447788876665666667888766554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.39  E-value=2.1e-05  Score=92.31  Aligned_cols=241  Identities=15%  Similarity=0.216  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh
Q 002638           40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESL--PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST  116 (898)
Q Consensus        40 eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~-pe~L--p~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P  116 (898)
                      ++.+..+..|..-   +..-.++.+|...+...+ -+.+  +.++.||...    +...=..++.+|+.+.....  +..
T Consensus         3 ~~~~~~l~~l~~~---~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~--~~~   73 (503)
T PF10508_consen    3 EWINELLEELSSK---AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALS--PDS   73 (503)
T ss_pred             hHHHHHHHHHhcc---cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccC--HHH
Confidence            3445555555444   333444445554443222 1122  3345555532    22222334444444443221  222


Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      -++.+.+++.++|.+|++.||.-|++.|++++.+-.... +  --.-..+++.++.+|.+.+..|...|+.+|.+++...
T Consensus        74 l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-~--~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~  150 (503)
T PF10508_consen   74 LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-Q--LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP  150 (503)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-H--HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence            389999999999999999999999999998875431100 0  0012457888999999999999999999999999642


Q ss_pred             CCCCchhHHHH-----HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH--HHHHHHHhhCCCCHHHHHHHHHH
Q 002638          197 SDPPVVAFQKL-----CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP--LLQSIHECLGSTDWATRKAAADA  269 (898)
Q Consensus       197 ~d~~~~yL~~L-----lPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~--lLp~L~e~LsddDW~vRKaA~Ea  269 (898)
                           ++++.|     ++.|..++.+.+..+|.-+|+++..++........++..  +++.++..|.++|--+|..|+|+
T Consensus       151 -----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel  225 (503)
T PF10508_consen  151 -----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL  225 (503)
T ss_pred             -----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence                 233333     888999998866667777888888887655333334443  88899999999999999999999


Q ss_pred             HHHHHHhcchHHHhh------HHHHHHHHHhhhcCC
Q 002638          270 LSALALHSSNLVIDG------ATSTLTVLEACRFDK  299 (898)
Q Consensus       270 L~sLA~avge~L~Py------~~~~I~~LE~~RfDK  299 (898)
                      |+.||. .... ..|      ++.+++.+.....|.
T Consensus       226 l~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~~~dp  259 (503)
T PF10508_consen  226 LSELAE-TPHG-LQYLEQQGIFDKLSNLLQDSEEDP  259 (503)
T ss_pred             HHHHHc-ChhH-HHHHHhCCHHHHHHHHHhccccCC
Confidence            999999 3322 223      244455555555444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=6.5e-05  Score=93.11  Aligned_cols=253  Identities=13%  Similarity=0.152  Sum_probs=196.0

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH
Q 002638           45 ILTSLSKLADRDTHQIAIEDLEKTIQT-----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT  119 (898)
Q Consensus        45 ll~~L~KLsDrDT~k~Aa~eLD~Ia~~-----L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp  119 (898)
                      +..-+.+-++.-+|+-+..-|+.+...     +....+..+...|.+.+++...+.|+..+.+|..|.+.|+.....+++
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            333444445677999999999999885     222236667777888888889999999999999999999977777889


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-
Q 002638          120 KIISHIVKRLKDSDSGMKEACRDSIGSLS--KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-  196 (898)
Q Consensus       120 kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA--~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a-  196 (898)
                      +.++-++=.++|.+-.-|+.+-.+|-.|.  ...++.+.+.....+..|+.-|.+.+......+-.....|+..++.+- 
T Consensus       738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  738 KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence            99998888889988777777666665555  333344433335678889999988886555555555477788888664 


Q ss_pred             CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638          197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA  274 (898)
Q Consensus       197 ~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA  274 (898)
                      .....+++++|+..++-.|.+.+.++..+++..|..++..-  ....+|++.+||.++..+.+-.-.+|+.+--.|-.|.
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44556899999999999999999998889999988887533  4578999999999999888878899999999999999


Q ss_pred             Hhcc-hHHHhhHHHH-HHHHHhhhc
Q 002638          275 LHSS-NLVIDGATST-LTVLEACRF  297 (898)
Q Consensus       275 ~avg-e~L~Py~~~~-I~~LE~~Rf  297 (898)
                      .-.| +.+.+|++.. .+.|...|-
T Consensus       898 rkfg~~eLe~~~pee~~klL~nIRK  922 (1176)
T KOG1248|consen  898 RKFGAEELESFLPEEDMKLLTNIRK  922 (1176)
T ss_pred             HHhCHHHHHhhCHHHHHHHHHHHHH
Confidence            9999 8888887654 345554443

>PTZ00429 beta-adaptin; Provisional

Probab=98.38  E-value=9.4e-05  Score=90.48  Aligned_cols=216  Identities=17%  Similarity=0.179  Sum_probs=137.2

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002638           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG  160 (898)
Q Consensus        81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~  160 (898)
                      ++.|..-..++++.+|--|++.|+.|      .+...++.++..|.+.|.|++|.||.+|+-++..+....-+-.     
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~I------r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-----  175 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCI------RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-----  175 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-----
Confidence            44444444555666666666655332      1234567788999999999999999999999999865441100     


Q ss_pred             hhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002638          161 TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA  240 (898)
Q Consensus       161 ~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~  240 (898)
                       .-..+++-|.+.|.++++.|+..|+.+|..+++..++. .......+.+|+..|..-+.-.+..+|+++....   ...
T Consensus       176 -~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~  250 (746)
T PTZ00429        176 -YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSD  250 (746)
T ss_pred             -cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC
Confidence             01236677788889999999999999999999865542 2445666777777776545445556666664321   112


Q ss_pred             cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       241 ~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                      ..-...++..+..+|.+.+..+--+|+.++..+..... +.+......+...+-.. ..+...+|=++++.+.+
T Consensus       251 ~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~  323 (746)
T PTZ00429        251 KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHA  323 (746)
T ss_pred             cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHH
Confidence            22345788888888888888998888888888775543 32332222222222222 23444455565555543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.32  E-value=4.1e-06  Score=78.11  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChh
Q 002638          224 ASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP  302 (898)
Q Consensus       224 ~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKp  302 (898)
                      .+.|-++.+++ +.+.....|++.+||+++.++.|+||.+|-.|||+|+.|+...++.+.+|+.++..+|-..-.|.++.
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~   83 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN   83 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence            34455566653 45556889999999999999999999999999999999999999888999999999999999999999


Q ss_pred             hHHHH
Q 002638          303 VRDSM  307 (898)
Q Consensus       303 VRD~A  307 (898)
                      ||..|
T Consensus        84 Vr~~a   88 (97)
T PF12755_consen   84 VRSAA   88 (97)
T ss_pred             HHHHH
Confidence            99865

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.31  E-value=2.4e-05  Score=95.73  Aligned_cols=199  Identities=16%  Similarity=0.164  Sum_probs=168.3

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~  155 (898)
                      ++.+-..|...+.+.+|..|++|+.-|..+.+--. +....|..-+...+.-+++|....|-..+..+|..|+..+ ...
T Consensus       251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l-r~~  329 (815)
T KOG1820|consen  251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL-RPL  329 (815)
T ss_pred             hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc-chh
Confidence            66666677777889999999999999999998877 5577888888889999999999999999999999999988 322


Q ss_pred             ccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638          156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~  235 (898)
                      +   ..+...+++.||+.+.+....+-.++-.|+.++++.      -.|..+.+-++.++++.+.++|.-+...++....
T Consensus       330 ~---~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  330 F---RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             h---HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            2   355677889999999999999999999999999982      2377899999999999999999988888877764


Q ss_pred             -cc-c-cCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch-HHHhhH
Q 002638          236 -VG-A-IAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN-LVIDGA  285 (898)
Q Consensus       236 -vG-a-~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge-~L~Py~  285 (898)
                       .+ . .+..-+..++|.+.....|.+-.+|++|.++++.|...+|+ .|.-|+
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L  454 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL  454 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence             33 2 35677888999999999999999999999999999999994 444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.29  E-value=0.0001  Score=87.60  Aligned_cols=168  Identities=11%  Similarity=0.124  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V  136 (898)
                      .+.......-.++..|.=+.+.+||..++.+-  ..|..|.-+|++.-.||...|-.+.|||..++.+|-.+|.|-..-|
T Consensus       492 VRnttarafavvasalgip~llpfLkavc~Sk--kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkV  569 (1172)
T KOG0213|consen  492 VRNTTARAFAVVASALGIPALLPFLKAVCGSK--KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKV  569 (1172)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHhccc--cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhh
Confidence            45555555566777775445667777777433  3599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-cCCCCchh----HHHHHHHH
Q 002638          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-ASDPPVVA----FQKLCARI  211 (898)
Q Consensus       137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~-a~d~~~~y----L~~LlPRL  211 (898)
                      |-.++.+++.|++.. .+   .+-+.+..+|+||-+.+...--.+-    .++-+.+-. ++..+.+|    -..+|-.+
T Consensus       570 R~itAlalsalaeaa-~P---ygie~fDsVlkpLwkgir~hrgk~l----aafLkAigyliplmd~eya~yyTrevmlil  641 (1172)
T KOG0213|consen  570 RTITALALSALAEAA-TP---YGIEQFDSVLKPLWKGIRQHRGKEL----AAFLKAIGYLIPLMDAEYASYYTREVMLIL  641 (1172)
T ss_pred             hhHHHHHHHHHHHhc-CC---cchHHHHHHHHHHHHHHHHccChHH----HHHHHHHhhccccccHHHHHHhHHHHHHHH
Confidence            999999999999988 22   2336699999999988843322222    222333322 23333333    44678888


Q ss_pred             HHHhcCCchhhHHHHHHHHHHHH
Q 002638          212 CKLLSNQNFMAKASLLPVVGSLS  234 (898)
Q Consensus       212 lkLLks~~~kaK~alL~aIgSLA  234 (898)
                      ++-+.+|+...|...|.++..+.
T Consensus       642 ~rEf~sPDeemkkivLKVv~qcc  664 (1172)
T KOG0213|consen  642 IREFGSPDEEMKKIVLKVVKQCC  664 (1172)
T ss_pred             HHhhCCChHHHHHHHHHHHHHHh
Confidence            88888888777777777666654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.00011  Score=92.60  Aligned_cols=238  Identities=15%  Similarity=0.145  Sum_probs=174.8

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~  155 (898)
                      ++-+|.-|+..+.+..|++|+++.++|.-+..|+. +.+..+||+|.-.++|...|-.-.||.|+-.+...|+..+++-+
T Consensus      1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            44444445555688899999999999999999999 55899999999999999999999999999888777777776531


Q ss_pred             ----ccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhh--------
Q 002638          156 ----EENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMA--------  222 (898)
Q Consensus       156 ----~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~ka--------  222 (898)
                          ...+.+....+||-|++-= ...-+.|-..+...+-+++..++..+.||+++|+|-|+.++...-.++        
T Consensus      1117 d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred             ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence                1122244555555554321 345677888888999999999999999999999999999998652221        


Q ss_pred             ---HHHHHHHHHHHHhcc-c------cCc-----ccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002638          223 ---KASLLPVVGSLSQVG-A------IAP-----QSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGAT  286 (898)
Q Consensus       223 ---K~alL~aIgSLA~vG-a------~~~-----pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge~L~Py~~  286 (898)
                         ...+++....=+.-+ .      ...     ..++.++|.+.+.+.. -...+|..++..+..|+..+|.-+.||.+
T Consensus      1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred             hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh
Confidence               112333333222111 1      112     3345677778887655 34678999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638          287 STLTVLEACRFDKIKPVRDSMNEALQLW  314 (898)
Q Consensus       287 ~~I~~LE~~RfDKvKpVRD~A~eALelW  314 (898)
                      ..+.+|-..--|+...||-+-.-|+...
T Consensus      1277 Kll~al~~g~~dRNesv~kafAsAmG~L 1304 (1702)
T KOG0915|consen 1277 KLLRALFPGAKDRNESVRKAFASAMGYL 1304 (1702)
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHH
Confidence            9999999888899988876554454443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00013  Score=83.94  Aligned_cols=259  Identities=17%  Similarity=0.218  Sum_probs=191.2

Q ss_pred             HcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHHHHHHH
Q 002638           50 SKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHIV  126 (898)
Q Consensus        50 ~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkIL~~Il  126 (898)
                      ..++|.++++.++..|...+..-.+-.++-+|..+..++.+.+|..|-.-+-   .+++.-+..+.   +-|..++-.+.
T Consensus       188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~A---f~ael~~~~~l~~~~lL~s~~~~la  264 (533)
T KOG2032|consen  188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIA---FFAELKRPKELDKTGLLGSVLLSLA  264 (533)
T ss_pred             hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHH---HHHHHhCcccccccccHHHHHHHHH
Confidence            3457889999999999988876655468888888888888888877765543   45566665543   56888899999


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc-CCCCchhH
Q 002638          127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA-SDPPVVAF  204 (898)
Q Consensus       127 rrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a-~d~~~~yL  204 (898)
                      .+..||+..+|.-|+..||..++.+-+.    ...+.+.++..++-.| ++.|+.||--|..||..+.|-. .+....|+
T Consensus       265 ~ka~dp~a~~r~~a~r~L~~~as~~P~k----v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~  340 (533)
T KOG2032|consen  265 NKATDPSAKSRGMACRGLGNTASGAPDK----VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL  340 (533)
T ss_pred             HhccCchhHHHHHHHHHHHHHhccCcHH----HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence            9999999999999999999999886332    2356777888888888 4568999999999999999986 55667899


Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc---c-cCc------------------c-------------------
Q 002638          205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG---A-IAP------------------Q-------------------  242 (898)
Q Consensus       205 ~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG---a-~~~------------------p-------------------  242 (898)
                      -.+.-|+..++++...++|.+++.+.|.++. .|   . .|.                  |                   
T Consensus       341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r  420 (533)
T KOG2032|consen  341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR  420 (533)
T ss_pred             hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH
Confidence            9999999999999999999988888888753 22   1 111                  1                   


Q ss_pred             -----cHH----HHHHHHH---------------H---h-------hCCCCH-HHHHHHHHHHHHHHHhcchHHHhhH--
Q 002638          243 -----SLE----PLLQSIH---------------E---C-------LGSTDW-ATRKAAADALSALALHSSNLVIDGA--  285 (898)
Q Consensus       243 -----yld----~lLp~L~---------------e---~-------LsddDW-~vRKaA~EaL~sLA~avge~L~Py~--  285 (898)
                           |++    ..++...               +   +       +-...| .+|.+|.-.-......+-+..-++.  
T Consensus       421 ke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~  500 (533)
T KOG2032|consen  421 KELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADG  500 (533)
T ss_pred             HHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence                 111    1111100               0   0       112357 6777666666666666666666665  


Q ss_pred             HHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002638          286 TSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       286 ~~~I~~LE~~RfDKvKpVRD~A~eALelWK  315 (898)
                      ..+...+...++|.-+.|++.+.+|++...
T Consensus       501 ~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  501 LQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            444778899999999999999999998754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.22  E-value=3.2e-05  Score=95.55  Aligned_cols=227  Identities=18%  Similarity=0.226  Sum_probs=157.1

Q ss_pred             hhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch
Q 002638           34 SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE  112 (898)
Q Consensus        34 ~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd  112 (898)
                      .+.-++-+.--|..|+.-+.-+++..-|++.|..++..++.|. |..+|+++.--..++...||-.|+..|..+...-.+
T Consensus       416 ~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~  495 (1431)
T KOG1240|consen  416 KEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD  495 (1431)
T ss_pred             cccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence            3444555667788899999889999999999999999886554 777777777666788899999998887666544322


Q ss_pred             h----chhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHH--HhcCCH-hH---
Q 002638          113 L----TSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA--MMEQNK-GV---  181 (898)
Q Consensus       113 ~----I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea--L~eqnk-~V---  181 (898)
                      .    .-=|-++|+|.|...+.| ....||-|-+..|+.||.-..+         +-++-..+-.+  +.+.|- ..   
T Consensus       496 ~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r---------Fle~~q~~~~~g~~n~~nset~~~~  566 (1431)
T KOG1240|consen  496 IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR---------FLELTQELRQAGMLNDPNSETAPEQ  566 (1431)
T ss_pred             CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------HHHHHHHHHhcccccCccccccccc
Confidence            1    223678899999999999 6779999999999999987722         22222222222  122211 11   


Q ss_pred             -HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCC
Q 002638          182 -QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTD  259 (898)
Q Consensus       182 -QegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~LsddD  259 (898)
                       +.+-..+|-..+|              ..+..+|.++...+|.++|..|.-|- -.|.  ...=+.+|+.|.-+|.|.|
T Consensus       567 ~~~~~~~~L~~~V~--------------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkD  630 (1431)
T KOG1240|consen  567 NYNTELQALHHTVE--------------QMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKD  630 (1431)
T ss_pred             ccchHHHHHHHHHH--------------HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCcc
Confidence             1112222222222              33456667777789999999988773 2341  1123468899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-----hHHHhhH
Q 002638          260 WATRKAAADALSALALHSS-----NLVIDGA  285 (898)
Q Consensus       260 W~vRKaA~EaL~sLA~avg-----e~L~Py~  285 (898)
                      |.+|.+-.|.|..|+..+|     +.+.|++
T Consensus       631 w~LR~aFfdsI~gvsi~VG~rs~seyllPLl  661 (1431)
T KOG1240|consen  631 WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL  661 (1431)
T ss_pred             HHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence            9999999999999999988     3455554

>PTZ00429 beta-adaptin; Provisional

Probab=98.16  E-value=0.00038  Score=85.30  Aligned_cols=251  Identities=14%  Similarity=0.128  Sum_probs=150.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChH
Q 002638           56 DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG  135 (898)
Q Consensus        56 DT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~  135 (898)
                      -.|..|+..|-.|.   .++.++.++..|.....+.++.|||.|++++..+-..+++.+..  ..+++.+...|.|+++.
T Consensus       120 ~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~  194 (746)
T PTZ00429        120 VVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPV  194 (746)
T ss_pred             HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCcc
Confidence            35666665554443   35567777888888888999999999999999998877766421  12344555668999999


Q ss_pred             HHHHHHHHHHHHHHHH--------------hc---c----------------cccCCchhHHhhHHHHHHHHhcCCHhHH
Q 002638          136 MKEACRDSIGSLSKLY--------------LN---G----------------KEENNGTVVGLFVKPLFEAMMEQNKGVQ  182 (898)
Q Consensus       136 VR~Ac~~tLG~LA~~l--------------ik---~----------------~~e~~~~~~~~lL~pL~eaL~eqnk~VQ  182 (898)
                      |...|..++-.+....              +.   +                .+++ ......++..+...|...|..|.
T Consensus       195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVV  273 (746)
T PTZ00429        195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVV  273 (746)
T ss_pred             HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHH
Confidence            9888877766664321              00   0                0010 11123345555555556788888


Q ss_pred             HHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCc-------------------
Q 002638          183 SGAAMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAP-------------------  241 (898)
Q Consensus       183 egAasALAkiIE~a~-d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~-------------------  241 (898)
                      -+|+.++-.+..... +....++.+|.+-++.++. ...-+|-.+|..|..++... ..|.                   
T Consensus       274 l~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~  352 (746)
T PTZ00429        274 MGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLE  352 (746)
T ss_pred             HHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHH
Confidence            777777776654321 1111233344444455543 33445656666665554322 2222                   


Q ss_pred             -----------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHH
Q 002638          242 -----------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA  310 (898)
Q Consensus       242 -----------pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eA  310 (898)
                                 ..++.++.-|.+++.+.|-..++.++.+|+.+|...+.    ....||+.|.....++..-    +.++
T Consensus       353 KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~----v~e~  424 (746)
T PTZ00429        353 KLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPEL----LPQV  424 (746)
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchh----HHHH
Confidence                       23344556677788888999999999999999987765    3455666554443344442    3345


Q ss_pred             HHHHHHhhcCC
Q 002638          311 LQLWKKIAGKV  321 (898)
Q Consensus       311 LelWK~La~~~  321 (898)
                      +...+.|-..|
T Consensus       425 i~vik~Ilrky  435 (746)
T PTZ00429        425 VTAAKDIVRKY  435 (746)
T ss_pred             HHHHHHHHHHC
Confidence            66666665443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.13  E-value=0.00013  Score=83.47  Aligned_cols=202  Identities=14%  Similarity=0.134  Sum_probs=143.4

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHH-HHHHHHHHhchhchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIl-LLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      .......|.+...+.....|++|+. +.+.++++--..=..|..+|+-.++..|.| .+..++.-|...|+-+...=..-
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            4444444444455668889999998 888888875555578999999999999999 67788888888887776654221


Q ss_pred             cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA  234 (898)
                      -+    +.....+.-++++-.+..+.|-..|..|+.+++-.  ..+...+-.++|.++.    .+++.-.++|.++--++
T Consensus       365 l~----DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~  434 (516)
T KOG2956|consen  365 LF----DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLF  434 (516)
T ss_pred             hh----chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHH
Confidence            11    11223344445555555565665566665555543  2223445566666663    56665557777777776


Q ss_pred             h-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHH
Q 002638          235 Q-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST  288 (898)
Q Consensus       235 ~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~  288 (898)
                      . +- +.+...++.++|++++...+..-.+||.|+=||++|...+| +.+.||+..+
T Consensus       435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence            3 33 56678899999999999999999999999999999999999 9999998665

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0021  Score=80.36  Aligned_cols=243  Identities=17%  Similarity=0.180  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHh---cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hchhchhhHHHHHHHHHHhhcCCCh
Q 002638           60 IAIEDLEKTIQ---TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHVTKIISHIVKRLKDSDS  134 (898)
Q Consensus        60 ~Aa~eLD~Ia~---~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg--~gd~I~PhLpkIL~~IlrrLkDpDs  134 (898)
                      ..+..||.++-   ..+.+.+..++.......++..+.+++-+..+|+.++.+  +..+...++..|...+...+++...
T Consensus       632 ~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~  711 (1176)
T KOG1248|consen  632 KTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS  711 (1176)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch
Confidence            34445555443   334445777665555555666788999999999999998  4445788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH--Hhc----CCCCchhHHHHH
Q 002638          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV--ECA----SDPPVVAFQKLC  208 (898)
Q Consensus       135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI--E~a----~d~~~~yL~~Ll  208 (898)
                      .+|...+.++-.|...+-.+    +-..++..++-++=.+.+.|...-..|+.||--++  ...    .++....++..+
T Consensus       712 ~~~~~rl~~L~~L~~~~~~e----~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl  787 (1176)
T KOG1248|consen  712 PAQASRLKCLKRLLKLLSAE----HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL  787 (1176)
T ss_pred             HHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence            99999999999998887211    11223333333333335667777778999988888  332    222244788888


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002638          209 ARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGA  285 (898)
Q Consensus       209 PRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~  285 (898)
                      +.|...|-+.....++.-|-+++.+.. .+ -...+++..++..+.-+|......+|++|+..+..+....+ ..+.||.
T Consensus       788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~  867 (1176)
T KOG1248|consen  788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL  867 (1176)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence            888888777666655554777777753 23 34477888888888899999999999999999999999999 7899999


Q ss_pred             HHHHHHHHhhhcCCChhhHHH
Q 002638          286 TSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       286 ~~~I~~LE~~RfDKvKpVRD~  306 (898)
                      +.+|..+.....|+--.+|-.
T Consensus       868 ~~LL~sll~ls~d~k~~~r~K  888 (1176)
T KOG1248|consen  868 EELLPSLLALSHDHKIKVRKK  888 (1176)
T ss_pred             HHHHHHHHHHHHhhhHHHHHH
Confidence            999998887777744445544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.01  E-value=0.00078  Score=74.81  Aligned_cols=207  Identities=14%  Similarity=0.149  Sum_probs=136.5

Q ss_pred             CCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638           90 DPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (898)
Q Consensus        90 s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL  167 (898)
                      +.+...|++++..|-.+...+.  +.+..+...|+..+++.|+=..+.=+..++.+++-|+-.+ .. .+...+++..+.
T Consensus        54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl-g~-g~~~~ei~~~~~  131 (309)
T PF05004_consen   54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL-GA-GEDSEEIFEELK  131 (309)
T ss_pred             hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc-CC-CccHHHHHHHHH
Confidence            3457899999999888876655  6688889999999999999888766777788888888776 11 233457788888


Q ss_pred             HHHHHHHhcCCH--hHHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHH--HHhcCC----------chhhHHHHHHHHH
Q 002638          168 KPLFEAMMEQNK--GVQSGAAMCMAKMVECASDPPVVAF--QKLCARIC--KLLSNQ----------NFMAKASLLPVVG  231 (898)
Q Consensus       168 ~pL~eaL~eqnk--~VQegAasALAkiIE~a~d~~~~yL--~~LlPRLl--kLLks~----------~~kaK~alL~aIg  231 (898)
                      ++|...+.+...  .+..+++.||+-++=-.......+.  -..|.-++  -+++..          ...+..++|.+-+
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            888888866543  3434455566665543222111121  12333111  122221          2345667777777


Q ss_pred             HHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch----HHHhhHHHHHHHHHhhhcC
Q 002638          232 SLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN----LVIDGATSTLTVLEACRFD  298 (898)
Q Consensus       232 SLA~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge----~L~Py~~~~I~~LE~~RfD  298 (898)
                      -|+. +. ..+..+++..+|.|.++|.++|-.+|.+|.|+|+.|.....+    ...+..+.+++.|...--|
T Consensus       212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d  284 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD  284 (309)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence            6653 22 224467788999999999999999999999999988776662    3344566666655543333

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.95  E-value=1.9e-05  Score=71.98  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      .++.++.+|.    +.++.+|+.++.+|++++....+....++. .+++.+++.|.|+++.|+..|+++++.|+......
T Consensus         8 ~i~~l~~~l~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~   83 (120)
T cd00020           8 GLPALVSLLS----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN   83 (120)
T ss_pred             ChHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence            4666666665    445899999999999999875555444455 88999999999999999999999999998654110


Q ss_pred             cccCCchhH-HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638          155 KEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       155 ~~e~~~~~~-~~lL~pL~eaL~eqnk~VQegAasALAkiIE  194 (898)
                          ....+ ..+++.|++.|.+.+..++..|+.+|..+++
T Consensus        84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence                01112 2378889999988899999999999998875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.92  E-value=0.00043  Score=70.52  Aligned_cols=93  Identities=16%  Similarity=0.274  Sum_probs=75.8

Q ss_pred             ChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHH
Q 002638           92 KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF  171 (898)
Q Consensus        92 k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~  171 (898)
                      +|.+|..++.++|-++-.|+..+.||+    +.+..+|+|+++.||..|.-++..|...-.-       ..-..++..++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-------k~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILEDMI-------KVKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-------eehhhhhHHHH
Confidence            467999999999999999998887775    5566899999999999999998887654211       22344556777


Q ss_pred             HHHhcCCHhHHHHHHHHHHHHHHh
Q 002638          172 EAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       172 eaL~eqnk~VQegAasALAkiIE~  195 (898)
                      .+|.|.|+.|+..|..+|..+...
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHh
Confidence            788999999999999999999875

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.91  E-value=3.6e-05  Score=70.22  Aligned_cols=109  Identities=18%  Similarity=0.132  Sum_probs=87.7

Q ss_pred             hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cCccc
Q 002638          166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IAPQS  243 (898)
Q Consensus       166 lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa-~~~py  243 (898)
                      +++.|++.|.+.++.+...|+.||..++...+.....++. .++|.|+++|.+++.+++..++.+++.++.... ....+
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            7788889998889999999999999999864333334555 689999999999999999999999999875431 11112


Q ss_pred             H-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638          244 L-EPLLQSIHECLGSTDWATRKAAADALSALA  274 (898)
Q Consensus       244 l-d~lLp~L~e~LsddDW~vRKaA~EaL~sLA  274 (898)
                      . ..+++.|.+++.+.+..+|+.|+.+|..|+
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            2 237889999999999999999999999875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.00021  Score=78.64  Aligned_cols=174  Identities=17%  Similarity=0.163  Sum_probs=132.2

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~  156 (898)
                      -..-|...+..+.+.+|...=.++..+-.+++.|.+.+-+.|.+++-+|++.++.+.+.|-.++|-|++.|++.+-.   
T Consensus        86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---  162 (334)
T KOG2933|consen   86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---  162 (334)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---
Confidence            44556666666778899999999999999999999999999999999999999999999999999999999999932   


Q ss_pred             cCCchhHHhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002638          157 ENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS  232 (898)
Q Consensus       157 e~~~~~~~~lL~pL~eaL----~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgS  232 (898)
                           .+..-+..|+-.|    .+.|.-|-+.|--||-+++.....      .+++++|+.++.|.+..++.-.--|...
T Consensus       163 -----~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  163 -----SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             -----HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence                 2444666666666    345788999999999999986532      2477777878887666655433333332


Q ss_pred             H-Hhcc--ccCcccHHHHHHHHHHhhCCCCHHHHH
Q 002638          233 L-SQVG--AIAPQSLEPLLQSIHECLGSTDWATRK  264 (898)
Q Consensus       233 L-A~vG--a~~~pyld~lLp~L~e~LsddDW~vRK  264 (898)
                      . +..|  ....+|+..+++.+.+-+.+.=..+|+
T Consensus       232 ~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~  266 (334)
T KOG2933|consen  232 CVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELRE  266 (334)
T ss_pred             cceeccccchhhHhHHHHHHHHHhhhccccccccc
Confidence            2 3333  455678888888888887775544443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0025  Score=78.50  Aligned_cols=182  Identities=11%  Similarity=0.172  Sum_probs=130.8

Q ss_pred             HHHHHHhcCCCCCHHHHHHHHhhhcC--------CCChhhHHHHHHHHHHHHHHhchh--chhhHHHH-HHHHHHhhcCC
Q 002638           64 DLEKTIQTLSQESLPMLLNCLYESSN--------DPKPAVKKESVRLLALVCELHSEL--TSTHVTKI-ISHIVKRLKDS  132 (898)
Q Consensus        64 eLD~Ia~~L~pe~Lp~fLs~L~es~~--------s~k~~vRKeAIlLLG~IAEg~gd~--I~PhLpkI-L~~IlrrLkDp  132 (898)
                      -|-.++..=..+.|+.+|+++.+-..        ..++..+.-|++++|.+++...+.  ....+++| +++|...+++|
T Consensus       395 ~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~  474 (1010)
T KOG1991|consen  395 FLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP  474 (1010)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc
Confidence            34445443356678888888766543        334556666999999999887654  34566665 46899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCC---CchhHHHHH
Q 002638          133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP---PVVAFQKLC  208 (898)
Q Consensus       133 Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~---~~~yL~~Ll  208 (898)
                      --.+|.-+||++++++..=++.     .......+.....+|. ++.-.|+.-|+.||..++.+....   +.+.++.+|
T Consensus       475 ~g~Lrarac~vl~~~~~~df~d-----~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m  549 (1010)
T KOG1991|consen  475 YGYLRARACWVLSQFSSIDFKD-----PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM  549 (1010)
T ss_pred             hhHHHHHHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence            9999999999999999443332     2457778888888886 777889999999999999986543   457889999


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002638          209 ARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE  253 (898)
Q Consensus       209 PRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e  253 (898)
                      ..|+++.+.-...   .+-.++-.++. .+....||...+++.|.+
T Consensus       550 q~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~  592 (1010)
T KOG1991|consen  550 QELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAE  592 (1010)
T ss_pred             HHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence            9999988753222   34445555542 345566777777776654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.82  E-value=8.3e-05  Score=82.36  Aligned_cols=216  Identities=14%  Similarity=0.189  Sum_probs=148.2

Q ss_pred             CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH---HHhchhchh--hHHHHHHHHHHhhcCCC---hHHHHHHHHHHH
Q 002638           74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVC---ELHSELTST--HVTKIISHIVKRLKDSD---SGMKEACRDSIG  145 (898)
Q Consensus        74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA---Eg~gd~I~P--hLpkIL~~IlrrLkDpD---s~VR~Ac~~tLG  145 (898)
                      ...+|.|+..|.    +.+-.+|+.++-+||+||   ++|-+.+..  .|..++..+.    .+.   ++||++ -|++.
T Consensus       156 ~~AVPlfiqlL~----s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~----ss~~~ismlRn~-TWtLS  226 (526)
T COG5064         156 AGAVPLFIQLLS----STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL----SSAIHISMLRNA-TWTLS  226 (526)
T ss_pred             CCchHHHHHHHc----CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH----hccchHHHHHHh-HHHHH
Confidence            334677777666    445679999999999996   556666533  3555555444    332   466665 48888


Q ss_pred             HHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHH
Q 002638          146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKA  224 (898)
Q Consensus       146 ~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~  224 (898)
                      .|++-= .|  +..-..+...++.|+..+-.-++.|-.-||-|+.-+.+...+-+...|+ .+.+||+++|.|++.++..
T Consensus       227 NlcRGk-nP--~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt  303 (526)
T COG5064         227 NLCRGK-NP--PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT  303 (526)
T ss_pred             HhhCCC-CC--CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence            877654 22  2233567788999999998889999999999999998875444444566 3789999999999999988


Q ss_pred             HHHHHHHHHHhcc-ccCcccH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhc
Q 002638          225 SLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRF  297 (898)
Q Consensus       225 alL~aIgSLA~vG-a~~~pyl-d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py-----~~~~I~~LE~~Rf  297 (898)
                      .+|..+|-++... ......+ -.+++.+...|++..-.+||.||=+|+.|...--+.++-.     ++.+|+.|....|
T Consensus       304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~  383 (526)
T COG5064         304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY  383 (526)
T ss_pred             HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence            8888888876322 1111111 1244555566888777999999999998876555544422     4677788876666


Q ss_pred             CCCh
Q 002638          298 DKIK  301 (898)
Q Consensus       298 DKvK  301 (898)
                      ---|
T Consensus       384 k~kK  387 (526)
T COG5064         384 KIKK  387 (526)
T ss_pred             HHHH
Confidence            4333

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.78  E-value=0.0023  Score=70.42  Aligned_cols=152  Identities=22%  Similarity=0.281  Sum_probs=91.3

Q ss_pred             HHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCch
Q 002638           82 NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT  161 (898)
Q Consensus        82 s~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~  161 (898)
                      ..+.....+.++.+|..+...++.+..          ...++.+...|.|.++.||..+..++|.+-             
T Consensus        46 ~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------------  102 (335)
T COG1413          46 DELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG-------------  102 (335)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------------
Confidence            333333345578888888877655543          556777888888888888888888666332             


Q ss_pred             hHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh------------hHHHHHH
Q 002638          162 VVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM------------AKASLLP  228 (898)
Q Consensus       162 ~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k------------aK~alL~  228 (898)
                       .+..+++|...|. +.+..|...|+.+|.++-+..          -+..++.++++....            ++.+++.
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             3446777777776 688888888888888776532          133344444443311            1222111


Q ss_pred             HHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638          229 VVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       229 aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a  276 (898)
                      .++.         ..-....+.|.+.+.+.+..+|.+|+.+|+.+...
T Consensus       172 ~l~~---------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         172 ALGE---------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE  210 (335)
T ss_pred             HHHH---------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence            1111         11224445556666666666666666666665554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.77  E-value=0.00018  Score=63.42  Aligned_cols=78  Identities=24%  Similarity=0.409  Sum_probs=63.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638           89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (898)
Q Consensus        89 ~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~  168 (898)
                      .+.++.+|..++.+||.+.          -+++++.++..|+|+++.||.++++++|.+.              -+..++
T Consensus        10 ~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~~~   65 (88)
T PF13646_consen   10 NDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEAIP   65 (88)
T ss_dssp             TSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHTHH
T ss_pred             cCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHHHH
Confidence            4788999999999999331          2477899999999999999999999999762              244777


Q ss_pred             HHHHHHhc-CCHhHHHHHHHHHH
Q 002638          169 PLFEAMME-QNKGVQSGAAMCMA  190 (898)
Q Consensus       169 pL~eaL~e-qnk~VQegAasALA  190 (898)
                      .|.+.|.+ .+..|+..|+.+|+
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            88888854 57788999999885

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.76  E-value=0.0017  Score=76.41  Aligned_cols=267  Identities=15%  Similarity=0.178  Sum_probs=149.7

Q ss_pred             HHHHHHcC--CChhHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhh
Q 002638           45 ILTSLSKL--ADRDTHQIAIEDLEKTIQTLS---QES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTH  117 (898)
Q Consensus        45 ll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~---pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~Ph  117 (898)
                      +-++|..|  ...+.+..|+...-.++.-|.   ... +.-+=..|++++....+.+=-..+.++..|...|. ..+.|-
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP  685 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP  685 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence            33445444  346677777766555554332   212 22222233455555445444444444444444444 335555


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHH---HHHHHHH--
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGA---AMCMAKM--  192 (898)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegA---asALAki--  192 (898)
                      +..|+|.|..-|+.....|-.-+...+|.++.....-.   +..-|--++=-|++.|...||.+.-.|   +.|++++  
T Consensus       686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi---~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG  762 (975)
T COG5181         686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI---GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG  762 (975)
T ss_pred             hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC---CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence            66666666666665555555544444444443331100   012233344444444444444444332   2222222  


Q ss_pred             ------------------------------HHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCc
Q 002638          193 ------------------------------VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAP  241 (898)
Q Consensus       193 ------------------------------IE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~  241 (898)
                                                    -|.+.      .=.++|-|+.=-..|..-+++..|.++.-++. .|+...
T Consensus       763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~  836 (975)
T COG5181         763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL  836 (975)
T ss_pred             HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence                                          22211      11356666666667777778888888877764 677777


Q ss_pred             ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          242 QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       242 pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      .|+-.+.|-|.+.|+|.|.--|..|...+..|+...+ ---..-+=-+++.|-.--++..++|..+..|-++.+...-|+
T Consensus       837 dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~  916 (975)
T COG5181         837 DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS  916 (975)
T ss_pred             HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence            8999999999999999999999999999999887644 111112233455555666777777777777777776665543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.73  E-value=0.0019  Score=79.12  Aligned_cols=229  Identities=17%  Similarity=0.108  Sum_probs=169.7

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc
Q 002638           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN  153 (898)
Q Consensus        76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik  153 (898)
                      .+..+++.+....++..+.+|-.-+-.+.. .+...  ..+.-+....+|.|...-.|..-.||.+..+.+-.++...  
T Consensus       434 ti~~llp~~~~~l~de~~~V~lnli~~ls~-~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~--  510 (759)
T KOG0211|consen  434 TISELLPLLIGNLKDEDPIVRLNLIDKLSL-LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL--  510 (759)
T ss_pred             CccccChhhhhhcchhhHHHHHhhHHHHHH-HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh--
Confidence            366666766666667777788777754422 23333  3356677788888888888888899999999999999888  


Q ss_pred             ccccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002638          154 GKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS  232 (898)
Q Consensus       154 ~~~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgS  232 (898)
                       +.    .++...+.+|+.. |.+.--.++.||+.+|.++++.-+  ..-+-..++|+++.+..+++|..|-..+.+|..
T Consensus       511 -~~----~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~  583 (759)
T KOG0211|consen  511 -GV----EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHE  583 (759)
T ss_pred             -hh----HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHH
Confidence             21    2233333333322 344456799999999999999765  223577899999999999999999999999999


Q ss_pred             HHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638          233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL  311 (898)
Q Consensus       233 LA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL  311 (898)
                      ++.+. .-..+.+.++|.+.++..|....+|..|+..|..+...+. +...   ..+..+++....|...-||-.|+.|+
T Consensus       584 la~v~-g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~~d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  584 LAEVL-GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLSSDQELDVRYRAILAF  659 (759)
T ss_pred             HHHHh-ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhccCcccchhHHHHHHH
Confidence            98654 1234677899999999999999999999999999888777 3333   44555666666688888888888887


Q ss_pred             HHHHHhh
Q 002638          312 QLWKKIA  318 (898)
Q Consensus       312 elWK~La  318 (898)
                      ......-
T Consensus       660 ~~i~l~~  666 (759)
T KOG0211|consen  660 GSIELSR  666 (759)
T ss_pred             HHHHHHH
Confidence            7765433

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.72  E-value=0.0023  Score=70.31  Aligned_cols=182  Identities=20%  Similarity=0.318  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc-CCC
Q 002638           55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSD  133 (898)
Q Consensus        55 rDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk-DpD  133 (898)
                      -..+..|+..|-.+-.   .+.++.+...+    .+.++.+|..++.+||.+-.          +.-++.+++.|. |++
T Consensus        57 ~~vr~~aa~~l~~~~~---~~av~~l~~~l----~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~  119 (335)
T COG1413          57 LLVRLSAAVALGELGS---EEAVPLLRELL----SDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDEN  119 (335)
T ss_pred             HHHHHHHHHHHhhhch---HHHHHHHHHHh----cCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCc
Confidence            3455555555333221   22344444444    46678999999997765532          334555666666 899


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHh------------HHHHHHHHHHHHHHhcCCCCc
Q 002638          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKG------------VQSGAAMCMAKMVECASDPPV  201 (898)
Q Consensus       134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~------------VQegAasALAkiIE~a~d~~~  201 (898)
                      ..||..|.++++.+-..-              .+.+|++.+.+....            ++..+..+|..+-+       
T Consensus       120 ~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-------  178 (335)
T COG1413         120 EGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-------  178 (335)
T ss_pred             HhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-------
Confidence            999999999998553322              477888888766532            34444444443332       


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hH
Q 002638          202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NL  280 (898)
Q Consensus       202 ~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~  280 (898)
                         +..++-+...+.++..-+|.++..+++.+..-.       ..+.+.+...+.+++|.+|+.++.+|+.+..... +.
T Consensus       179 ---~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~  248 (335)
T COG1413         179 ---PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDA  248 (335)
T ss_pred             ---hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH
Confidence               235666777778777777888777777764311       5677788899999999999999999998766555 44


Q ss_pred             HHhh
Q 002638          281 VIDG  284 (898)
Q Consensus       281 L~Py  284 (898)
                      +..+
T Consensus       249 l~~~  252 (335)
T COG1413         249 LAKA  252 (335)
T ss_pred             HHHH
Confidence            4444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.67  E-value=0.0049  Score=77.11  Aligned_cols=258  Identities=17%  Similarity=0.214  Sum_probs=169.5

Q ss_pred             CChhHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhhhc----CC-CChhhHHHHHHHHHHHHHHhchhc----------
Q 002638           53 ADRDTHQIAIEDLEKTIQ---TLSQESLPMLLNCLYESS----ND-PKPAVKKESVRLLALVCELHSELT----------  114 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~---~L~pe~Lp~fLs~L~es~----~s-~k~~vRKeAIlLLG~IAEg~gd~I----------  114 (898)
                      ++.+.|..|+..|-++..   .+++..-..|-.+|+..+    .+ ....+|-+.-..|+.+|.....++          
T Consensus       474 s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g  553 (1431)
T KOG1240|consen  474 SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG  553 (1431)
T ss_pred             chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            345578888877766654   456655445555554432    33 556788776666666665422110          


Q ss_pred             ---------------hh---hHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638          115 ---------------ST---HVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (898)
Q Consensus       115 ---------------~P---hLpkIL~-~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~  175 (898)
                                     -.   .|.+++. .+...|.|+++.||.+-.+.|+.|+.+..+...      -..+|.-|+..|.
T Consensus       554 ~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks------ND~iLshLiTfLN  627 (1431)
T KOG1240|consen  554 MLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS------NDVILSHLITFLN  627 (1431)
T ss_pred             cccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc------ccchHHHHHHHhc
Confidence                           01   2333333 455668999999999999999999999966432      3458888999999


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002638          176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL  255 (898)
Q Consensus       176 eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L  255 (898)
                      +.++....+=+-.+.-++=..+..  ..=+.|+|-|.+.|.++-..+-..+|.|+..++..|-.-.+++-.++....-+|
T Consensus       628 DkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL  705 (1431)
T KOG1240|consen  628 DKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL  705 (1431)
T ss_pred             CccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe
Confidence            998888754333333222222221  113357888899999886666667788888888777556788889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcc---------hHHHhhHHHHH------HHHHhhhcCCChhhHHHHHHHH-------HH
Q 002638          256 GSTDWATRKAAADALSALALHSS---------NLVIDGATSTL------TVLEACRFDKIKPVRDSMNEAL-------QL  313 (898)
Q Consensus       256 sddDW~vRKaA~EaL~sLA~avg---------e~L~Py~~~~I------~~LE~~RfDKvKpVRD~A~eAL-------el  313 (898)
                      -.++-=+|.++|..|.+++..++         +.+.||+.+-+      +.|..|..+-+.  |.+-...|       .|
T Consensus       706 ~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVs--Rsv~~~l~r~~~ens~f  783 (1431)
T KOG1240|consen  706 CHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVS--RSVFNQLLRWSDENSSF  783 (1431)
T ss_pred             eCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCc--HHHHHHHHHHhhcchHH
Confidence            99887899999999999998877         25666654432      234566665553  44433333       36


Q ss_pred             HHHhhcC
Q 002638          314 WKKIAGK  320 (898)
Q Consensus       314 WK~La~~  320 (898)
                      |+.+-..
T Consensus       784 ~k~l~~~  790 (1431)
T KOG1240|consen  784 WKKLLER  790 (1431)
T ss_pred             HHHHHHH
Confidence            6666544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.61  E-value=0.0008  Score=69.63  Aligned_cols=142  Identities=15%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHH-hchhchhhHHHHHHHH------------HHhhcCCChHHHHHHHHHHHHHHHHHhcc------c
Q 002638           95 VKKESVRLLALVCEL-HSELTSTHVTKIISHI------------VKRLKDSDSGMKEACRDSIGSLSKLYLNG------K  155 (898)
Q Consensus        95 vRKeAIlLLG~IAEg-~gd~I~PhLpkIL~~I------------lrrLkDpDs~VR~Ac~~tLG~LA~~lik~------~  155 (898)
                      +|-.|+.+|..+++. -...+-.|++.++|..            .-.++||++.||.+++.++..|-+.. ++      .
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-KPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHh
Confidence            566777777777776 3344666666666644            44588999999999999999987654 21      1


Q ss_pred             ccCCc-----------hhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhcCCchh
Q 002638          156 EENNG-----------TVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASD--PPVVAFQKLCARICKLLSNQNFM  221 (898)
Q Consensus       156 ~e~~~-----------~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d--~~~~yL~~LlPRLlkLLks~~~k  221 (898)
                      ..+..           ..+-++=.-|+.+| .|++..+....+-||+.++++.+.  ...+++.+++..+.+++.+.+..
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11111           12333334455555 477888999999999999999854  44578999999999999998888


Q ss_pred             hHHHHHHHHHHHHhcc
Q 002638          222 AKASLLPVVGSLSQVG  237 (898)
Q Consensus       222 aK~alL~aIgSLA~vG  237 (898)
                      ++.+++.|++.++.+.
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999997654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.52  E-value=0.0027  Score=73.24  Aligned_cols=195  Identities=15%  Similarity=0.187  Sum_probs=140.2

Q ss_pred             HHHHHHcCC---ChhHHHHHHHHHHHHHhc--CC--CCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHhchhchh
Q 002638           45 ILTSLSKLA---DRDTHQIAIEDLEKTIQT--LS--QESLPMLLNCLYESSND-PKPAVKKESVRLLALVCELHSELTST  116 (898)
Q Consensus        45 ll~~L~KLs---DrDT~k~Aa~eLD~Ia~~--L~--pe~Lp~fLs~L~es~~s-~k~~vRKeAIlLLG~IAEg~gd~I~P  116 (898)
                      +...|.++.   --+-++.|+.+|-.+...  ++  .+.|.-+|-.+++...+ .+...|+.|+++|+-+++..+..+..
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            444455552   235778899988888862  11  11266777777777755 67888999999999999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638          117 HVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~  195 (898)
                      +-+-.+..++..-+|++. .+|.|.-+++..++.+.   +.    .-+..+.+.|+.   +..| .-.++.-++.+++|.
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~---P~----~~I~~i~~~Ilt---~D~~-~~~~~iKm~Tkl~e~  436 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL---PL----QCIVNISPLILT---ADEP-RAVAVIKMLTKLFER  436 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC---ch----hHHHHHhhHHhc---Ccch-HHHHHHHHHHHHHhh
Confidence            998889999999999887 45777777777777777   22    112223322222   2333 333466699999998


Q ss_pred             cC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc-ccCcccHHHHHHH
Q 002638          196 AS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG-AIAPQSLEPLLQS  250 (898)
Q Consensus       196 a~-d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vG-a~~~pyld~lLp~  250 (898)
                      .. +.+...++.++|.+++..++...-+|..++=|+-++. .+| +.+.||++.+=..
T Consensus       437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s  494 (516)
T KOG2956|consen  437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS  494 (516)
T ss_pred             cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence            64 3445789999999999999998888877777777775 688 7888998876443

>TIGR02270 conserved hypothetical protein

Probab=97.51  E-value=0.0012  Score=76.04  Aligned_cols=151  Identities=18%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638          119 TKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (898)
Q Consensus       119 pkIL~~IlrrL-kDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~  197 (898)
                      +..++.++..| .|+++.|+.+|+.++...     +         -+..+..|+++|.+.++.|..+++.+|..+-.   
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~-----~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---  115 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQ-----E---------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---  115 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhcc-----C---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---
Confidence            44577788888 577888887766555311     0         11247888888988888899999888875432   


Q ss_pred             CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638          198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (898)
Q Consensus       198 d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av  277 (898)
                             +...+.|+++|++.+..+|.+++.+++-.   +.       ...+.|..+|.+.|..+|..|+.+|+.|....
T Consensus       116 -------~~a~~~L~~~L~~~~p~vR~aal~al~~r---~~-------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~  178 (410)
T TIGR02270       116 -------RQAEPWLEPLLAASEPPGRAIGLAALGAH---RH-------DPGPALEAALTHEDALVRAAALRALGELPRRL  178 (410)
T ss_pred             -------hHHHHHHHHHhcCCChHHHHHHHHHHHhh---cc-------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence                   34678888888888888887766555542   11       12345667778999999999999998876432


Q ss_pred             chHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       278 ge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                      .          +..|...+.|.++.||..|+.++-.
T Consensus       179 a----------~~~L~~al~d~~~~VR~aA~~al~~  204 (410)
T TIGR02270       179 S----------ESTLRLYLRDSDPEVRFAALEAGLL  204 (410)
T ss_pred             c----------hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            1          1123344778889999988888733

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.011  Score=72.31  Aligned_cols=221  Identities=18%  Similarity=0.133  Sum_probs=162.8

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638           88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (898)
Q Consensus        88 ~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL  167 (898)
                      ..++.++.|-.++.-|.-++|-....-.-+..+|+...+..|+|-|+.|.--|...+..|+..+-           ..++
T Consensus       736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----------e~il  804 (982)
T KOG4653|consen  736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----------EDIL  804 (982)
T ss_pred             hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----------hhhH
Confidence            34677899999999999999966544555678999999999999999999999999999999981           2356


Q ss_pred             HHHHH-HHhcCCH-----hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cC
Q 002638          168 KPLFE-AMMEQNK-----GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IA  240 (898)
Q Consensus       168 ~pL~e-aL~eqnk-----~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa-~~  240 (898)
                      +-|.+ ....+++     ....|  .|+-++++.-++....|+..|+..+++..++|.-.-|+..+..+|-+-..-+ ..
T Consensus       805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             HHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            66666 3333322     23344  7888999988888889999999999999999977778877777777643211 11


Q ss_pred             cccHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcchHHHhhH----HHH-HHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638          241 PQSLEPLLQSIHECL-GSTDWATRKAAADALSALALHSSNLVIDGA----TST-LTVLEACRFDKIKPVRDSMNEALQLW  314 (898)
Q Consensus       241 ~pyld~lLp~L~e~L-sddDW~vRKaA~EaL~sLA~avge~L~Py~----~~~-I~~LE~~RfDKvKpVRD~A~eALelW  314 (898)
                      ...+-.++..+.... .|+...+|++|+..+..+....|+.+.|+.    -+. ...+...|.+...-+|=-+..+++..
T Consensus       883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            224555555555553 467789999999999999999997777754    222 23444566666666776777777777


Q ss_pred             HHhhcCC
Q 002638          315 KKIAGKV  321 (898)
Q Consensus       315 K~La~~~  321 (898)
                      ......+
T Consensus       963 ~a~l~n~  969 (982)
T KOG4653|consen  963 QAALEND  969 (982)
T ss_pred             HHHHHhc
Confidence            7666554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.44  E-value=0.00064  Score=59.92  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=67.5

Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638          122 ISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP  200 (898)
Q Consensus       122 L~~IlrrL-kDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~  200 (898)
                      ++.+++.| +|+++.||..+++++|.+       +       .+.+++.|++.+.+.++.|+..|+.+|..+=       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL-------G-------DPEAIPALIELLKDEDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC-------T-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc-------C-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence            57788888 999999999999999922       1       3467889999999999999999999999773       


Q ss_pred             chhHHHHHHHHHHHhcCC-chhhHHHHHHHHH
Q 002638          201 VVAFQKLCARICKLLSNQ-NFMAKASLLPVVG  231 (898)
Q Consensus       201 ~~yL~~LlPRLlkLLks~-~~kaK~alL~aIg  231 (898)
                         -+..++.|.+++.++ ...+|..++.+||
T Consensus        60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               245778888888775 4556777777664

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.39  E-value=0.058  Score=59.36  Aligned_cols=133  Identities=23%  Similarity=0.254  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhcCCCCC-HHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHH
Q 002638           60 IAIEDLEKTIQTLSQES-LPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK  137 (898)
Q Consensus        60 ~Aa~eLD~Ia~~L~pe~-Lp~fLs~L-~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR  137 (898)
                      ++...|+.+...+.+.. +..++..| .....+.++.+|+.|+.+||..|-...+.-..|++-++..+.+   | +..|+
T Consensus         6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~   81 (298)
T PF12719_consen    6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK   81 (298)
T ss_pred             HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence            34455666665565533 55666554 4677888999999999999999998888888888777776632   3 88999


Q ss_pred             HHHHHHHHHHHHHHhcccccCC-----chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          138 EACRDSIGSLSKLYLNGKEENN-----GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       138 ~Ac~~tLG~LA~~lik~~~e~~-----~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      -+|..+|.-+.-.+-...++..     ......+++.+...|...++.+|..|+.+|+|+.=.-
T Consensus        82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            9999999888877622211111     1224568888888887779999999999999998654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.0024  Score=71.72  Aligned_cols=227  Identities=19%  Similarity=0.182  Sum_probs=146.9

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhc------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhh-
Q 002638           45 ILTSLSKLADRDTHQIAIEDLEKTIQT------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH-  117 (898)
Q Consensus        45 ll~~L~KLsDrDT~k~Aa~eLD~Ia~~------L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~Ph-  117 (898)
                      ++-.|.+.+|.|.+-.+...|-.|+-.      |-. .=|.+++.|.+-+.+..+.++=.|.++|++++.-. ++..|. 
T Consensus       212 vLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv  289 (550)
T KOG4224|consen  212 VLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIV  289 (550)
T ss_pred             hhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHH
Confidence            445677889999988888877666531      211 11334555555556777889999999999998642 222211 


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhc
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a  196 (898)
                      -.-=+|.+++.|++|--..--+.+.+|..++-+=..++.    =.-.-||+||...|. ..|..+|-+|...|-.+--..
T Consensus       290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l----I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass  365 (550)
T KOG4224|consen  290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL----IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS  365 (550)
T ss_pred             hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc----eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence            112256677777777654445555556555544332211    011339999999995 558889999999988777644


Q ss_pred             CCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH-H-HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002638          197 SDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL-E-PLLQSIHECLGSTDWATRKAAADALSAL  273 (898)
Q Consensus       197 ~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyl-d-~lLp~L~e~LsddDW~vRKaA~EaL~sL  273 (898)
                      ..-...+.. --+|++..++-+....++.-.-.||..++-.. .+..++ + .++|.|+..+.+.+-.+|..|+++|..+
T Consensus       366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl  444 (550)
T KOG4224|consen  366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL  444 (550)
T ss_pred             hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence            333333333 26788888888776666666666776665322 121122 1 3677888889999999999999999998


Q ss_pred             HHhcc
Q 002638          274 ALHSS  278 (898)
Q Consensus       274 A~avg  278 (898)
                      ..-+.
T Consensus       445 ss~v~  449 (550)
T KOG4224|consen  445 SSDVE  449 (550)
T ss_pred             hhhhH
Confidence            87665

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.013  Score=71.73  Aligned_cols=176  Identities=18%  Similarity=0.222  Sum_probs=131.1

Q ss_pred             CCCCCHHHHHHHHhhhcC----CCC-hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh-hcCCChHHHHHHHHHHH
Q 002638           72 LSQESLPMLLNCLYESSN----DPK-PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSDSGMKEACRDSIG  145 (898)
Q Consensus        72 L~pe~Lp~fLs~L~es~~----s~k-~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr-LkDpDs~VR~Ac~~tLG  145 (898)
                      |+...+..+..-|.+...    +++ |..=++|+..+-.+++-.++.-.+.+++.+..+..- +.-+.+..-.+|.++||
T Consensus       455 lgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~ig  534 (982)
T KOG2022|consen  455 LGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIG  534 (982)
T ss_pred             HhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHH
Confidence            344345555555555443    233 556667999999999999988899999988877654 55568889999999999


Q ss_pred             HHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh--hH
Q 002638          146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM--AK  223 (898)
Q Consensus       146 ~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k--aK  223 (898)
                      .++.|+.++.     .+++..++.||++|+.....+|  |...|.++||.++....+|.+.++--.-.++...+++  .+
T Consensus       535 s~s~~l~e~P-----~~ln~sl~~L~~~Lh~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~  607 (982)
T KOG2022|consen  535 SLSNWLGEHP-----MYLNPSLPLLFQGLHNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDR  607 (982)
T ss_pred             HHHHHHhcCC-----cccCchHHHHHHHhcCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHH
Confidence            9999995543     5678889999999974444455  5666999999998888899998887777777655433  46


Q ss_pred             HHHHHHHHHHHhc-c-ccCcccHHHHHHHHHHh
Q 002638          224 ASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHEC  254 (898)
Q Consensus       224 ~alL~aIgSLA~v-G-a~~~pyld~lLp~L~e~  254 (898)
                      ..++.+||-+.+. . +..+.|+..++.++++-
T Consensus       608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~q  640 (982)
T KOG2022|consen  608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQ  640 (982)
T ss_pred             HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHH
Confidence            6889999998653 2 45677888888877654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.34  E-value=0.0013  Score=80.25  Aligned_cols=157  Identities=16%  Similarity=0.156  Sum_probs=128.1

Q ss_pred             HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccC
Q 002638          163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIA  240 (898)
Q Consensus       163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~-~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~  240 (898)
                      +..++|.|.+......-.+.--=..+|+.++-+.|.+ +.+.++.|+|-|++.|.-++.-+|...+.+|..+.. .+...
T Consensus       865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            5556666666664222222222456788888776543 357899999999999999999999999999988864 44677


Q ss_pred             cccHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002638          241 PQSLEPLLQSIHECLGSTD---WATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (898)
Q Consensus       241 ~pyld~lLp~L~e~LsddD---W~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~  316 (898)
                      ..|++.++|.++..-.+.|   ..+|..|++||++|...+| ..+.||.+.+|.+|.-+.-||-+-||.-|..+=+-|-.
T Consensus       945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred             hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence            8999999999999877755   7899999999999999999 88999999999999999999999999999999999988


Q ss_pred             hhc
Q 002638          317 IAG  319 (898)
Q Consensus       317 La~  319 (898)
                      +..
T Consensus      1025 l~s 1027 (1030)
T KOG1967|consen 1025 LGS 1027 (1030)
T ss_pred             ccc
Confidence            763

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.34  E-value=0.02  Score=67.45  Aligned_cols=227  Identities=20%  Similarity=0.244  Sum_probs=134.8

Q ss_pred             CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHH---------------------------
Q 002638           72 LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKI---------------------------  121 (898)
Q Consensus        72 L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkI---------------------------  121 (898)
                      +.++.+.+.++.|...+.+.....|-+|++.|..+|-.+++.+.   +-++.+                           
T Consensus       296 v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idr  375 (898)
T COG5240         296 VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDR  375 (898)
T ss_pred             cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHH
Confidence            46667888888888888889999999999999999988776542   223322                           


Q ss_pred             -HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCC
Q 002638          122 -ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP  199 (898)
Q Consensus       122 -L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~  199 (898)
                       +..|..-+.|-.-...-++.+++..|+-..-        ..|..+|.-|...|. +-.-.-...+.-|+..+++..++.
T Consensus       376 Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp--------~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s  447 (898)
T COG5240         376 LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP--------SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS  447 (898)
T ss_pred             HHHHHHHHHHhhccCceEEeHHHHHHHHhhCc--------HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH
Confidence             2222222222222222233333443333331        225556666666652 223334445666666666655443


Q ss_pred             CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002638          200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN  279 (898)
Q Consensus       200 ~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge  279 (898)
                      -.-.|..||    ..+.+--|  -..++..++-+-.-|.-. +.-..++..+.+.+.-++--+|.+|..||...|....+
T Consensus       448 kEraLe~LC----~fIEDcey--~~I~vrIL~iLG~EgP~a-~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d  520 (898)
T COG5240         448 KERALEVLC----TFIEDCEY--HQITVRILGILGREGPRA-KTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD  520 (898)
T ss_pred             HHHHHHHHH----HHHhhcch--hHHHHHHHHHhcccCCCC-CCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc
Confidence            222343443    33332222  224444444443223111 11124555566666667788999999999999998887


Q ss_pred             HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002638          280 LVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       280 ~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK  315 (898)
                      .+.|  .++..+|..|..|+++.|||-|.-++++..
T Consensus       521 ~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         521 VVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             cccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            6553  466778999999999999998766666654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.33  E-value=0.087  Score=57.55  Aligned_cols=229  Identities=12%  Similarity=0.090  Sum_probs=155.7

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQE-----SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK  127 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe-----~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilr  127 (898)
                      .|..+|.-|+..|-.+...++++     ++..++.++.+...+  +..=..++..|-.+++ +.........+|+..|.+
T Consensus        11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~   87 (262)
T PF14500_consen   11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ   87 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH
Confidence            56778889999999999888743     377788888877743  3333444777777773 334445567777777777


Q ss_pred             hhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhH
Q 002638          128 RLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAF  204 (898)
Q Consensus       128 rLkDp--Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL  204 (898)
                      ...-+  -..+|..+-..+-.|........    ...-..|+..+++++ +|.+|+--.-++.-+..++..-+-  .++.
T Consensus        88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l----~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~  161 (262)
T PF14500_consen   88 NVDVQSLPQSTRYAVYQLLDSLLENHREAL----QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFA  161 (262)
T ss_pred             hCChhhhhHHHHHHHHHHHHHHHHHhHHHH----HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhH
Confidence            55443  35789999998888887763221    133467888889988 789999888888888888775431  2333


Q ss_pred             HHHHHHHHHHh----cC---Cchh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638          205 QKLCARICKLL----SN---QNFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       205 ~~LlPRLlkLL----ks---~~~k-aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a  276 (898)
                      +.|..-+.-.+    +.   ..++ .+..+-.++.....   ..+.|.+..+|.|++.|.++...++.-++++|..-...
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~---s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS---STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc---CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            33322222221    11   1222 22233333333221   23456678999999999999999999999999999999


Q ss_pred             cc-hHHHhhHHHHHHHHH
Q 002638          277 SS-NLVIDGATSTLTVLE  293 (898)
Q Consensus       277 vg-e~L~Py~~~~I~~LE  293 (898)
                      .| +.+.||...+-..|.
T Consensus       239 y~~~~~~~~~~~iw~~lk  256 (262)
T PF14500_consen  239 YGADSLSPHWSTIWNALK  256 (262)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            99 889999999988775

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.29  E-value=0.0096  Score=73.16  Aligned_cols=178  Identities=15%  Similarity=0.235  Sum_probs=128.6

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC
Q 002638          120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP  199 (898)
Q Consensus       120 kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~  199 (898)
                      .+.+.....-+|-.+.||.+++.-+|.++..+.++      .....+++-+.+.+.+....|+++|..++..+.+.....
T Consensus       237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~------~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~  310 (759)
T KOG0211|consen  237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE------IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD  310 (759)
T ss_pred             HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHH------HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence            44555555567788999999999999999999542      334445555555557777889999999999999876554


Q ss_pred             CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638          200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (898)
Q Consensus       200 ~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg  278 (898)
                      . +..+.+++.+++..++++-.++.+....-..+. .+|.  ...-....++....+++..|..|.+++.-...++....
T Consensus       311 ~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~  387 (759)
T KOG0211|consen  311 D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN  387 (759)
T ss_pred             h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence            3 667789999999999998887776555444443 3442  22333566777788999999999888777777666665


Q ss_pred             -hHHH-hhHHHHHHHHHhhhcCCChhhHHH
Q 002638          279 -NLVI-DGATSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       279 -e~L~-Py~~~~I~~LE~~RfDKvKpVRD~  306 (898)
                       +.+. -....++.+++.+-.|....||.+
T Consensus       388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a  417 (759)
T KOG0211|consen  388 ASCYPNIPDSSILPEVQVLVLDNALHVRSA  417 (759)
T ss_pred             cccccccchhhhhHHHHHHHhcccchHHHH
Confidence             2111 123555688889999999999975

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.27  E-value=0.0018  Score=79.12  Aligned_cols=213  Identities=13%  Similarity=0.153  Sum_probs=155.4

Q ss_pred             CChhHHHHHHHHHHHHHhcC----CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh------c-------h
Q 002638           53 ADRDTHQIAIEDLEKTIQTL----SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------T-------S  115 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L----~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~------I-------~  115 (898)
                      +..|-+.+|.+-|-=+...|    .|+..+. -..|.+..++  +.+-..+..+|..+..-+...      .       .
T Consensus       786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~i-a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ  862 (1030)
T KOG1967|consen  786 GSLDLSEIALTVLAWVTKALLLRNHPESSEI-AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ  862 (1030)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcccchH-HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence            44555666666655444432    2333322 2223333333  333455666666655433211      1       1


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~  195 (898)
                      -+...|+|.+++.+.-.+..++.-...++..+..++-++   -....++.++|-|+++|+=.+..||..+-.||..++..
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~  939 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE  939 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence            257788999999998666777877777777766666332   23355889999999999999999999999999999998


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCch---hhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638          196 ASDPPVVAFQKLCARICKLLSNQNF---MAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (898)
Q Consensus       196 a~d~~~~yL~~LlPRLlkLLks~~~---kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL  270 (898)
                      .+.+...+++.++|.++.+=.++++   -+|..+|.|++++..+-  ....+|-+.++..|..+|.|.-.-+|+.|+++=
T Consensus       940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            8888889999999999999888764   47889999999998633  567899999999999999999999999999984


Q ss_pred             H
Q 002638          271 S  271 (898)
Q Consensus       271 ~  271 (898)
                      .
T Consensus      1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred             h
Confidence            3

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.27  E-value=0.033  Score=62.05  Aligned_cols=200  Identities=20%  Similarity=0.177  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH-HHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSK-LYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~-~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      +..-+.-.+..|.|.....|.++...|-.+.. ++..   +........++..+...+.-....-|.-|+.+++-++=..
T Consensus        41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~---d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl  117 (309)
T PF05004_consen   41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP---DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL  117 (309)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence            44445566777888889999999998766653 3321   1122445667777777774333355666766666665432


Q ss_pred             --CCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHH---HHHHHHH--HhhCC----------
Q 002638          197 --SDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLE---PLLQSIH--ECLGS----------  257 (898)
Q Consensus       197 --~d~~~~yL~~LlPRLlkLLks~--~~kaK~alL~aIgSLA~vGa~~~pyld---~lLp~L~--e~Lsd----------  257 (898)
                        ......++..+.|.|.+++.+.  +.++|.+++.|++-+.-++..-..-+.   ..|..++  .++..          
T Consensus       118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence              3444578899999999999875  457788888888887544422223344   3333222  22222          


Q ss_pred             CCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          258 TDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       258 dDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      ++..+..+|+++.+.|+..++ ..+..+....+..|-.+.--.+..||-+|=++|-+.=++...
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            346799999999999999999 457777788888777666666777999999999998777764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.22  E-value=0.03  Score=68.83  Aligned_cols=239  Identities=18%  Similarity=0.152  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---
Q 002638           41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---  115 (898)
Q Consensus        41 LK~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---  115 (898)
                      +|+.++.+|..+  +|..++.+|-..|.++-.   ++.|-..|.-+.-.. ...-+.|+.|+..|....+.|+-...   
T Consensus         2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~---~~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~f   77 (1005)
T KOG2274|consen    2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL---TEGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAF   77 (1005)
T ss_pred             cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc---chHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence            578899999877  688888888877775543   334555555544322 23466899999999999999884321   


Q ss_pred             --h------hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638          116 --T------HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM  187 (898)
Q Consensus       116 --P------hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas  187 (898)
                        |      --..|...++..|-|+...+|.++..++..++.+-.-       +.|+++++-++++|...|.+.--||..
T Consensus        78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-------d~WpElv~~i~~~l~~~n~n~i~~am~  150 (1005)
T KOG2274|consen   78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-------DEWPELVPFILKLLSSGNENSIHGAMR  150 (1005)
T ss_pred             cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-------hhhHHHHHHHHHHHhccchhhhhhHHH
Confidence              1      1234555667777799999999999999999998732       449999999999998888888899999


Q ss_pred             HHHHHHHhcC-CCCchhHHHH---HHHHHHHhcCCchh--hHHHHHHHHHHH---Hh-cc----ccCcccHHHHHHHHHH
Q 002638          188 CMAKMVECAS-DPPVVAFQKL---CARICKLLSNQNFM--AKASLLPVVGSL---SQ-VG----AIAPQSLEPLLQSIHE  253 (898)
Q Consensus       188 ALAkiIE~a~-d~~~~yL~~L---lPRLlkLLks~~~k--aK~alL~aIgSL---A~-vG----a~~~pyld~lLp~L~e  253 (898)
                      ||+.+..+.. ..+....+..   +-+++++....+..  .+.+.+....++   +. .+    +....++..+|+...+
T Consensus       151 vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~  230 (1005)
T KOG2274|consen  151 VLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD  230 (1005)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997642 1111111222   23444444544433  333322222222   21 22    1223344444444444


Q ss_pred             hhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638          254 CLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (898)
Q Consensus       254 ~Lsd-------dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~  290 (898)
                      .+..       .+|.+|...+-++..+....+..+.||+.....
T Consensus       231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~  274 (1005)
T KOG2274|consen  231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFS  274 (1005)
T ss_pred             HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhh
Confidence            3322       689999999999999999999888888765544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.012  Score=71.30  Aligned_cols=102  Identities=15%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002638           80 LLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN  159 (898)
Q Consensus        80 fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~  159 (898)
                      +..+|..-+++.+-.+   ..++|-+++..|..-+.   +-+.|-|.+.|+.+++.||.=|.-+..++.+...       
T Consensus       108 ltNslknDL~s~nq~v---VglAL~alg~i~s~Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-------  174 (866)
T KOG1062|consen  108 LTNSLKNDLNSSNQYV---VGLALCALGNICSPEMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-------  174 (866)
T ss_pred             HHHHHHhhccCCCeee---hHHHHHHhhccCCHHHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-------
Confidence            3444444344444433   44444444444544443   4557888888999999999988888877776661       


Q ss_pred             chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638          160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       160 ~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~  195 (898)
                       +....|+++.-..|.+.+..|-.++.--+..+|+.
T Consensus       175 -~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~  209 (866)
T KOG1062|consen  175 -DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI  209 (866)
T ss_pred             -hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence             44667778888888887777776554444555544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.18  E-value=0.11  Score=59.92  Aligned_cols=248  Identities=15%  Similarity=0.164  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC----------CCC---hhhHHHHHHHHHHHHHHhchhchhhHHHHH
Q 002638           56 DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN----------DPK---PAVKKESVRLLALVCELHSELTSTHVTKII  122 (898)
Q Consensus        56 DT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~----------s~k---~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL  122 (898)
                      ..-..+..-+..++..++++.=..++..+....-          ...   +..+.-.++..+.++....+-..|.+..++
T Consensus       112 ~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll  191 (415)
T PF12460_consen  112 RVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELL  191 (415)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHH
Confidence            3445666667777777775543333333322110          111   234455556666777767777777888888


Q ss_pred             HHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc--CC
Q 002638          123 SHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA--SD  198 (898)
Q Consensus       123 ~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a--~d  198 (898)
                      ..++..... .++.+|.+++..++.|+-.+.+.      +.+..++..++..+ ....+.....+...+.-+.-+.  +.
T Consensus       192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDD------DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            888887555 45899999999999998886322      34677777777777 3334444444444444444432  21


Q ss_pred             CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc---------cc-----cCcccHHHHHHHHHHhhCCCCHHHHH
Q 002638          199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV---------GA-----IAPQSLEPLLQSIHECLGSTDWATRK  264 (898)
Q Consensus       199 ~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v---------Ga-----~~~pyld~lLp~L~e~LsddDW~vRK  264 (898)
                      .  +....++.+|+.+|.++...  ..+-.+++-+..-         ++     .-+-+|..++|.|.+.....+-..|-
T Consensus       266 ~--~~~~~~~~~L~~lL~~~~~g--~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~  341 (415)
T PF12460_consen  266 H--PLATELLDKLLELLSSPELG--QQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS  341 (415)
T ss_pred             C--chHHHHHHHHHHHhCChhhH--HHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence            1  34567888899999985443  3334444444311         11     12678889999999998887666888


Q ss_pred             HHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          265 AAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       265 aA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                      .-.-+|..|...+| +.+.++++.++..+..+---.+..||.++++.|..
T Consensus       342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~  391 (415)
T PF12460_consen  342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM  391 (415)
T ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88999999999999 89999999999977655544455578875555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0061  Score=68.61  Aligned_cols=253  Identities=13%  Similarity=0.083  Sum_probs=165.1

Q ss_pred             HHHcCCChhHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hchhchhhH
Q 002638           48 SLSKLADRDTHQIAIEDLEKTIQTLS-------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHV  118 (898)
Q Consensus        48 ~L~KLsDrDT~k~Aa~eLD~Ia~~L~-------pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg--~gd~I~PhL  118 (898)
                      -|+|..|--.++.|+..|-.+...-.       ...++.+++.+.    +.++.+|..|-.++++|+-.  +-+.+..-=
T Consensus       174 rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqae  249 (550)
T KOG4224|consen  174 RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAE  249 (550)
T ss_pred             hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence            36777666699999998887765432       223555555444    56788999999999998743  445577778


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH--hcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-
Q 002638          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY--LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-  195 (898)
Q Consensus       119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l--ik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~-  195 (898)
                      |+++|.++....|+++.|.-.+..+++.|+...  ..+..      -.--+|.|++.|.++.-..-.+...|+-.+-=. 
T Consensus       250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv------~ag~lP~lv~Llqs~~~plilasVaCIrnisihp  323 (550)
T KOG4224|consen  250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV------EAGSLPLLVELLQSPMGPLILASVACIRNISIHP  323 (550)
T ss_pred             cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH------hcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence            899999999999999999999999999998754  11211      111355666677655444445555666433211 


Q ss_pred             -cCCCC--chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcc-ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638          196 -ASDPP--VVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVG-AIA-PQSLEPLLQSIHECLGSTDWATRKAAADA  269 (898)
Q Consensus       196 -a~d~~--~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vG-a~~-~pyld~lLp~L~e~LsddDW~vRKaA~Ea  269 (898)
                       ..-++  ..||.+|    ..+|.-. +..+|.++.+.+.-+|+.. ... ...-...+|.|.+.+-|..-.+|..-.-|
T Consensus       324 lNe~lI~dagfl~pL----VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac  399 (550)
T KOG4224|consen  324 LNEVLIADAGFLRPL----VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC  399 (550)
T ss_pred             CcccceecccchhHH----HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence             11111  2455554    4455543 4557778888888876422 111 11112457788888888777777766667


Q ss_pred             HHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638          270 LSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW  314 (898)
Q Consensus       270 L~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelW  314 (898)
                      |..++..--++..-.-..++++|-...++...+||+-+.+||.-+
T Consensus       400 ~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl  444 (550)
T KOG4224|consen  400 IAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL  444 (550)
T ss_pred             HHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence            777776655433322356788888899999999999877776543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.14  E-value=0.014  Score=63.45  Aligned_cols=192  Identities=16%  Similarity=0.155  Sum_probs=131.8

Q ss_pred             CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002638           72 LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKL  150 (898)
Q Consensus        72 L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~  150 (898)
                      ++++.|..++.+|.   .+.+|..++.+..++++.+..-. ..+.-. --.++.|...|.+|++.||.-+.+++..++..
T Consensus         9 l~~~~l~~Ll~lL~---~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen    9 LEAQELQKLLCLLE---STEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVN   84 (254)
T ss_pred             cCHHHHHHHHHHHh---cCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence            56667877777776   24579999999999999765322 122211 24578899999999999999999999988776


Q ss_pred             HhcccccCCchhHHhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 002638          151 YLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLP  228 (898)
Q Consensus       151 lik~~~e~~~~~~~~lL~pL~eaL~e--qnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~  228 (898)
                      .-      ....+..++..+.+.+..  -|-.+|.++..+|..+.=  .+.....+...+|.|+.+|...+.++|..+|.
T Consensus        85 ~e------n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk  156 (254)
T PF04826_consen   85 DE------NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLK  156 (254)
T ss_pred             hh------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHHH
Confidence            61      124466677777777633  378999998888888742  22222446677889999999999999999899


Q ss_pred             HHHHHHhcc----ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002638          229 VVGSLSQVG----AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS  278 (898)
Q Consensus       229 aIgSLA~vG----a~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg  278 (898)
                      ++.-++.-.    ..+..   ..+..+...+.. .+.++...++..+..|-..+.
T Consensus       157 ~L~nLS~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  157 VLVNLSENPDMTRELLSA---QVLSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             HHHHhccCHHHHHHHHhc---cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            888876311    22211   223344444444 356667777777777766665

>TIGR02270 conserved hypothetical protein

Probab=97.10  E-value=0.057  Score=62.50  Aligned_cols=24  Identities=13%  Similarity=0.386  Sum_probs=11.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHH
Q 002638          122 ISHIVKRLKDSDSGMKEACRDSIG  145 (898)
Q Consensus       122 L~~IlrrLkDpDs~VR~Ac~~tLG  145 (898)
                      +..++..|.|+++.||.++..++|
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg  111 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALG  111 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHh
Confidence            334444444444444444444444

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.09  E-value=0.022  Score=72.96  Aligned_cols=150  Identities=16%  Similarity=0.295  Sum_probs=115.6

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC
Q 002638           54 DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD  133 (898)
Q Consensus        54 DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD  133 (898)
                      |+++.+.++.-|-.... |. ..|..||..|.-....+...+|--|+++|..+++.-+.-+.  .+.|...|..++.|+.
T Consensus       793 d~~~a~li~~~la~~r~-f~-~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Dss  868 (1692)
T KOG1020|consen  793 DDDDAKLIVFYLAHARS-FS-QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSS  868 (1692)
T ss_pred             cchhHHHHHHHHHhhhH-HH-HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccch
Confidence            44555555544443222 21 24899999999888888999999999999999996554433  4788899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 002638          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK  213 (898)
Q Consensus       134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlk  213 (898)
                      ..||+|+++.+|+++-..        .+....|...+.+.+.+..-.|---+.--|..+|+..++.  .....+|-|++.
T Consensus       869 asVREAaldLvGrfvl~~--------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlr  938 (1692)
T KOG1020|consen  869 ASVREAALDLVGRFVLSI--------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLR  938 (1692)
T ss_pred             hHHHHHHHHHHhhhhhcc--------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHH
Confidence            999999999999988776        2557788889999999999999999999999999976654  334555555555


Q ss_pred             HhcC
Q 002638          214 LLSN  217 (898)
Q Consensus       214 LLks  217 (898)
                      -.++
T Consensus       939 Rv~D  942 (1692)
T KOG1020|consen  939 RVND  942 (1692)
T ss_pred             Hhcc
Confidence            5544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.96  E-value=0.0013  Score=54.12  Aligned_cols=53  Identities=30%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002638          260 WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ  312 (898)
Q Consensus       260 W~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALe  312 (898)
                      |.+|.+|+.+|+.++...++.+.||...++..|..+..|....||..|..||.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999888775

...

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.19  Score=63.21  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=115.0

Q ss_pred             chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC-HhHHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-KGVQSGAAMCMAKM  192 (898)
Q Consensus       114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn-k~VQegAasALAki  192 (898)
                      +..+++.++-+++..|+|.|..||..++..+|++...+.   .    .....++...++.+...+ ..+=-|||.+||.+
T Consensus       335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAEL  407 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---P----ELADQVIGSVIDLFNPAEDDSAWHGACLALAEL  407 (1133)
T ss_pred             cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---H----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHH
Confidence            557899999999999999999999999999999999992   2    456667777777664333 44556999999998


Q ss_pred             HHhcCCCCchhHHHHHHHHHHHhcCC--------chhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHH-HhhCCCCHH
Q 002638          193 VECASDPPVVAFQKLCARICKLLSNQ--------NFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIH-ECLGSTDWA  261 (898)
Q Consensus       193 IE~a~d~~~~yL~~LlPRLlkLLks~--------~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~-e~LsddDW~  261 (898)
                      --. +-.+...+..++|-+++.|.=.        .-++|-++.=++=+++.+-  ..+.|++..+.+.|+ ..+-|.+-.
T Consensus       408 A~r-GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevn  486 (1133)
T KOG1943|consen  408 ALR-GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVN  486 (1133)
T ss_pred             Hhc-CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhh
Confidence            752 2333346788888888877422        2235555555566666533  345678888888765 568899999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 002638          262 TRKAAADALSALALHSS  278 (898)
Q Consensus       262 vRKaA~EaL~sLA~avg  278 (898)
                      .|.+|.-+|-......|
T Consensus       487 cRRAAsAAlqE~VGR~~  503 (1133)
T KOG1943|consen  487 CRRAASAALQENVGRQG  503 (1133)
T ss_pred             HhHHHHHHHHHHhccCC
Confidence            99999988876655543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.099  Score=63.88  Aligned_cols=228  Identities=15%  Similarity=0.133  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V  136 (898)
                      ..-.|+-.|-.|.   ++|..+-+++-+.+-+++.++.+||-|+++.--+.+.-++.+    +.+++...+.|+|.+..|
T Consensus       123 vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGV  195 (866)
T KOG1062|consen  123 VVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGV  195 (866)
T ss_pred             ehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCce
Confidence            3345555555444   677888889999888889999999999999877777665554    344566677788888766


Q ss_pred             HHHHHHHHHHHHHH---------------------Hhcc----cccC---CchhHHhhHHHHHHHHhcCCHhHHHHHHHH
Q 002638          137 KEACRDSIGSLSKL---------------------YLNG----KEEN---NGTVVGLFVKPLFEAMMEQNKGVQSGAAMC  188 (898)
Q Consensus       137 R~Ac~~tLG~LA~~---------------------lik~----~~e~---~~~~~~~lL~pL~eaL~eqnk~VQegAasA  188 (898)
                      --+....+..++..                     ++..    +.+.   .+.+++.-+-.|+..|+..++..-+..+.-
T Consensus       196 L~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~Di  275 (866)
T KOG1062|consen  196 LIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDI  275 (866)
T ss_pred             eeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            55555444444433                     1110    0000   001222222234444555666666666666


Q ss_pred             HHHHHHhcC---CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC----------------cccHHHHHH
Q 002638          189 MAKMVECAS---DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA----------------PQSLEPLLQ  249 (898)
Q Consensus       189 LAkiIE~a~---d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~----------------~pyld~lLp  249 (898)
                      |+.++...+   +.--.+|=.-+..++-+..  +...|..++.+||-|..-....                +..+..=-.
T Consensus       276 LaqvatntdsskN~GnAILYE~V~TI~~I~~--~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~  353 (866)
T KOG1062|consen  276 LAQVATNTDSSKNAGNAILYECVRTIMDIRS--NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS  353 (866)
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence            666665431   1111122222222222222  2233445555555553211111                111222223


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhh
Q 002638          250 SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC  295 (898)
Q Consensus       250 ~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~  295 (898)
                      .+++||.|.|-.+|+.|+|.+..|.-.  ..+...+.+.|.+|+.+
T Consensus       354 tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~  397 (866)
T KOG1062|consen  354 TILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLESS  397 (866)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhc
Confidence            578999999999999999999977653  55666778888888877

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.019  Score=68.54  Aligned_cols=219  Identities=18%  Similarity=0.199  Sum_probs=138.8

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc--ccc
Q 002638           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK-IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG--KEE  157 (898)
Q Consensus        81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpk-IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~--~~e  157 (898)
                      ..+|.....++++.||.+|+..|=++.+|..      |++ +....++.|+|.+..||.+|...+-.++..+.-+  ...
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccc------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            3335545567788899998888877777432      222 3556788899999999999999888888777322  111


Q ss_pred             CCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHH--------------------------
Q 002638          158 NNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCAR--------------------------  210 (898)
Q Consensus       158 ~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPR--------------------------  210 (898)
                      .........+..+.+++.+-.-.|..-|+-+|..|..-....+...|+ +++-+                          
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~  353 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW  353 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence            223556777778888886654444333555555444433222222333 23331                          


Q ss_pred             ------------------------HHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHH
Q 002638          211 ------------------------ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAA  266 (898)
Q Consensus       211 ------------------------LlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA  266 (898)
                                              |+.-|.+.-+.+|.+++..+++++.   ..+.+....+-.|.+.+.|+.-.+|.-|
T Consensus       354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---ssP~FA~~aldfLvDMfNDE~~~VRL~a  430 (823)
T KOG2259|consen  354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---SSPGFAVRALDFLVDMFNDEIEVVRLKA  430 (823)
T ss_pred             cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence                                    1111222234466777777777764   4466777888888999999999999999


Q ss_pred             HHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          267 ADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       267 ~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                      +-+|..|+..+- .=..+++.+++.|+    |....||+.+.+.|..
T Consensus       431 i~aL~~Is~~l~-i~eeql~~il~~L~----D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  431 IFALTMISVHLA-IREEQLRQILESLE----DRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHhe-ecHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Confidence            999999988843 11123444444444    8778788876655543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=96.88  E-value=0.046  Score=63.69  Aligned_cols=215  Identities=15%  Similarity=0.168  Sum_probs=121.1

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHH----HHHHHHhhcCC-ChHHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKI----ISHIVKRLKDS-DSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkI----L~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~l  151 (898)
                      +..+|..|+..+..+....-+..++++-.+.-...+.+.|+...|    +..+..-.+.| +|..-+-+-++||.+.+..
T Consensus        24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~  103 (435)
T PF03378_consen   24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV  103 (435)
T ss_dssp             HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence            344444444333222222233344444444444555555554444    44444445555 5899999999999999997


Q ss_pred             hcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHH-HhcCCchhhHHHHHHH
Q 002638          152 LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQKLCARICK-LLSNQNFMAKASLLPV  229 (898)
Q Consensus       152 ik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~-d~~~~yL~~LlPRLlk-LLks~~~kaK~alL~a  229 (898)
                      .+...+.....-..+++++...|.+.-....--++.=|+-++|..+ ..+.+....|+|.|+. .+=...- -=+++..+
T Consensus       104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g-niPalvrL  182 (435)
T PF03378_consen  104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG-NIPALVRL  182 (435)
T ss_dssp             -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT-THHHHHHH
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC-CcCcHHHH
Confidence            5432211223344455555555554445555667778889999865 3333333344444432 1111111 11477888


Q ss_pred             HHHHHhcc-ccC--cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHh
Q 002638          230 VGSLSQVG-AIA--PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEA  294 (898)
Q Consensus       230 IgSLA~vG-a~~--~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~  294 (898)
                      +.+++..+ ..+  ..++..++...+.++.+...+  -.+.+.|.+|...++ +.+.||+..++.+|-.
T Consensus       183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~  249 (435)
T PF03378_consen  183 LQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT  249 (435)
T ss_dssp             HHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred             HHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            88887654 322  478888888888888875322  357899999999999 7899999999987753

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=96.85  E-value=0.015  Score=65.20  Aligned_cols=259  Identities=15%  Similarity=0.133  Sum_probs=160.3

Q ss_pred             CChhHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQT--------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIIS  123 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~--------L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~  123 (898)
                      +..|.+.+|+=.|-.|+..        |....|.++|..|.++..+ -...| -+--.|.++|+|-..- --..+.+.+|
T Consensus       169 ~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-ismlR-n~TWtLSNlcRGknP~P~w~~isqalp  246 (526)
T COG5064         169 TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISMLR-NATWTLSNLCRGKNPPPDWSNISQALP  246 (526)
T ss_pred             chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHHH-HhHHHHHHhhCCCCCCCchHHHHHHHH
Confidence            3456777777777766642        1233477888888743211 12333 4555677888875432 2346788899


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (898)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~-~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~  202 (898)
                      .+.+.+---|+.|-.-|||+|.-|+.---.    ..+.++. -+.+.|+++|...+..+|.-|.-....++-+.+++..-
T Consensus       247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E----~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv  322 (526)
T COG5064         247 ILAKLIYSRDPEVLVDACWAISYLSDGPNE----KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV  322 (526)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHhccCcHH----HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence            999999888998988999999866533211    1111111 13467999998888899998998888888765544332


Q ss_pred             hHH-HHHHHHHHHhcCCchhhH-HHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638          203 AFQ-KLCARICKLLSNQNFMAK-ASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHS  277 (898)
Q Consensus       203 yL~-~LlPRLlkLLks~~~kaK-~alL~aIgSLA~vG--a~~~pyld-~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av  277 (898)
                      +++ -.++-|-.+|.++.-.+| +++-. |+-+ .+|  ......++ .++|+|...|+.-+..+||.||=++......-
T Consensus       323 iI~~G~L~a~~~lLs~~ke~irKEaCWT-iSNI-TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg  400 (526)
T COG5064         323 IINCGALKAFRSLLSSPKENIRKEACWT-ISNI-TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG  400 (526)
T ss_pred             heecccHHHHHHHhcChhhhhhhhhhee-eccc-ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            222 134455566888866554 44432 2222 223  22333333 47889999999999999999999988765432


Q ss_pred             c---hHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          278 S---NLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       278 g---e~L~Py~--~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      -   +.+. |+  ..||+.|....--.+-.+-++++.+++-...+...
T Consensus       401 ~~~PD~ir-yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~  447 (526)
T COG5064         401 LNRPDIIR-YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ  447 (526)
T ss_pred             cCCchHHH-HHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence            2   4433 53  55677665332222222448877777776665544

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.81  E-value=0.043  Score=68.11  Aligned_cols=193  Identities=12%  Similarity=0.034  Sum_probs=152.2

Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHh
Q 002638          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~  195 (898)
                      -+++|-+.+...+-|++-.=|..+.+.+......--..    .......++..++... .+.|..|-.-|+.||..+.-.
T Consensus       250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~  325 (815)
T KOG1820|consen  250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK  325 (815)
T ss_pred             hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence            47888899999999999999998888777666555211    1122334455555555 577888888899999999999


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002638          196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL  275 (898)
Q Consensus       196 a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~  275 (898)
                      .+....+|...+.|.|+..|+...-.++.+++.|+.++..     ...+..+++.+.+++.+.+.+.|......|.....
T Consensus       326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            9888888999999999999999888888888888888754     34577888999999999999999998888888777


Q ss_pred             hcch--HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638          276 HSSN--LVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       276 avge--~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La  318 (898)
                      -.+.  ....-...++..+-..-.|+.++||.++.+++-....+-
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence            7773  233346777888888888999999999999987665443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.76  E-value=0.0017  Score=48.17  Aligned_cols=31  Identities=13%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l  151 (898)
                      |+|.+++.|+|+++.||.+|+.++|.|++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~   31 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC   31 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999998763

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.74  E-value=0.028  Score=57.34  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCC
Q 002638          178 NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS  257 (898)
Q Consensus       178 nk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsd  257 (898)
                      ++.+...+..||.-+|-.-+    ..+++.+|.+...|++++..+|..++-++.-++..+  +...-..++..+..++.|
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~~l~~~~l~~l~D   74 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MIKVKGQLFSRILKLLVD   74 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--ceeehhhhhHHHHHHHcC
Confidence            45677778888888876443    457788899999999999999999999999997633  333334556667788899


Q ss_pred             CCHHHHHHHHHHHHHHHHh-cchHHHhhHHHHHHHHHhhhcC
Q 002638          258 TDWATRKAAADALSALALH-SSNLVIDGATSTLTVLEACRFD  298 (898)
Q Consensus       258 dDW~vRKaA~EaL~sLA~a-vge~L~Py~~~~I~~LE~~RfD  298 (898)
                      +|..+|..|..+|..++.. .+..|..++.++|-.|..+..+
T Consensus        75 ~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~  116 (178)
T PF12717_consen   75 ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH  116 (178)
T ss_pred             CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence            9999999999999999999 5688999999999999877543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.73  E-value=0.017  Score=60.07  Aligned_cols=115  Identities=19%  Similarity=0.234  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHh
Q 002638          204 FQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL---ALH  276 (898)
Q Consensus       204 L~~LlPRLlkLLks~~----~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sL---A~a  276 (898)
                      ++.++|-++.-|....    |-++....+.+-.  ..+.-..|.+..++++|...|...|..+..+++++|..|   ...
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~  113 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM  113 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence            4567788887776543    3344444444443  223567889999999999999999999999999999999   888


Q ss_pred             cchHHHhhHHHHHHHHH---hhh--------cCCChhhHHHHHHHHHHHHHhhcC
Q 002638          277 SSNLVIDGATSTLTVLE---ACR--------FDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       277 vge~L~Py~~~~I~~LE---~~R--------fDKvKpVRD~A~eALelWK~La~~  320 (898)
                      +|+.|.||..+++.++.   +++        +.+.+.++|.+.++|+..-.-+|.
T Consensus       114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~  168 (183)
T PF10274_consen  114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP  168 (183)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence            99999999999988776   333        245577899999999998877765

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.72  E-value=0.4  Score=58.86  Aligned_cols=220  Identities=16%  Similarity=0.184  Sum_probs=138.8

Q ss_pred             HHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHH
Q 002638           47 TSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV  126 (898)
Q Consensus        47 ~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Il  126 (898)
                      .|.+..++. .|+.|+..|-++-. |++++-..++.+|..-+.+..+.|=-.|+++|..+|--+-+.|-+|..++.    
T Consensus       150 ~~~~D~s~y-VRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC----  223 (968)
T KOG1060|consen  150 KAVTDPSPY-VRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLC----  223 (968)
T ss_pred             HHhcCCcHH-HHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHH----
Confidence            344444433 88888888887764 678777788888877777888889999999998888777777777776654    


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHHHHhccc-c------c------------------CCchhHHhhHHHHHHHHhcCCHhH
Q 002638          127 KRLKDSDSGMKEACRDSIGSLSKLYLNGK-E------E------------------NNGTVVGLFVKPLFEAMMEQNKGV  181 (898)
Q Consensus       127 rrLkDpDs~VR~Ac~~tLG~LA~~lik~~-~------e------------------~~~~~~~~lL~pL~eaL~eqnk~V  181 (898)
                      +.|.|-|.==+-....+|.++|++.+-.+ .      +                  ....-+..+|..+=-+|...|+.|
T Consensus       224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV  303 (968)
T KOG1060|consen  224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV  303 (968)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence            45555554444456677888888775321 0      0                  001224445544444445678887


Q ss_pred             HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHH--------------
Q 002638          182 QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEP--------------  246 (898)
Q Consensus       182 QegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~--------------  246 (898)
                      -.++|.++--+-   +.   .-...++.-|+.+|.++ ..+|..+|.+|..++-.. ..|.||++.              
T Consensus       304 VmA~aql~y~lA---P~---~~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~l  376 (968)
T KOG1060|consen  304 VMAVAQLFYHLA---PK---NQVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKIL  376 (968)
T ss_pred             HHHHHhHHHhhC---CH---HHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHH
Confidence            777776654332   11   12334555556666653 234566777777765322 455555543              


Q ss_pred             ----------------HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002638          247 ----------------LLQSIHECLGSTDWATRKAAADALSALALHSSN  279 (898)
Q Consensus       247 ----------------lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge  279 (898)
                                      +++-++.+..+.|..+=.+|+++||.-|...+.
T Consensus       377 KleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s  425 (968)
T KOG1060|consen  377 KLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS  425 (968)
T ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence                            333444556677777888888999988888875

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.45  Score=58.14  Aligned_cols=169  Identities=12%  Similarity=0.120  Sum_probs=115.0

Q ss_pred             CCHHHHHHHHhhhc-------CC-CChhhHHHHHHHHHHHHHHhchhc---hhhHH-HHHHHHHHhhcCCChHHHHHHHH
Q 002638           75 ESLPMLLNCLYESS-------ND-PKPAVKKESVRLLALVCELHSELT---STHVT-KIISHIVKRLKDSDSGMKEACRD  142 (898)
Q Consensus        75 e~Lp~fLs~L~es~-------~s-~k~~vRKeAIlLLG~IAEg~gd~I---~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~  142 (898)
                      +.|.++|+++.+..       .+ .++...+.|+++|+.+.. .-...   ...+. -|+++++..++++---++.-+|+
T Consensus       404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace  482 (970)
T COG5656         404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE  482 (970)
T ss_pred             hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence            34777777776554       12 345566679999999988 33332   22333 36789999999999999999999


Q ss_pred             HHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHhcCCch
Q 002638          143 SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLLSNQNF  220 (898)
Q Consensus       143 tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a--~d~~~~yL~~LlPRLlkLLks~~~  220 (898)
                      .+..+....-+.      .+.-.+......+|.++.-.|+.-|+.||.-++-+.  .+.....++.+|.+|+.+-+.-..
T Consensus       483 ~is~~eeDfkd~------~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei  556 (970)
T COG5656         483 FISTIEEDFKDN------GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI  556 (970)
T ss_pred             HHHHHHHhcccc------hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc
Confidence            999997777333      335667788888888888899999999999999753  333346778888888877664333


Q ss_pred             hhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002638          221 MAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE  253 (898)
Q Consensus       221 kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e  253 (898)
                      .+   +-.++-+++. ......||...++..|.+
T Consensus       557 D~---LS~vMe~fVe~fseELspfa~eLa~~Lv~  587 (970)
T COG5656         557 DP---LSMVMESFVEYFSEELSPFAPELAGSLVR  587 (970)
T ss_pred             hH---HHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence            22   2223333321 114566777777776654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.13  Score=64.66  Aligned_cols=238  Identities=16%  Similarity=0.148  Sum_probs=149.6

Q ss_pred             HhHHHHHHHHHHHH-HcCCCh--hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHHhc
Q 002638           36 LAMVEMKQKILTSL-SKLADR--DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHS  111 (898)
Q Consensus        36 ~~~~eLK~rll~~L-~KLsDr--DT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-s~k~~vRKeAIlLLG~IAEg~g  111 (898)
                      +..++....++..| ..|.|+  ..+-.|++.+-+++..++++...-.+.-+.+... -.....=.-++++|+.+|. .|
T Consensus       333 edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rG  411 (1133)
T KOG1943|consen  333 EDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RG  411 (1133)
T ss_pred             cccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cC
Confidence            34455555555544 555544  4778999999999999986554344444443211 1112222367777776665 22


Q ss_pred             hhchhhHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-----hcCC
Q 002638          112 ELTSTHVTKIISHIVKRLKDSD--------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-----MEQN  178 (898)
Q Consensus       112 d~I~PhLpkIL~~IlrrLkDpD--------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-----~eqn  178 (898)
                      =.+..-++.|+|.|++.|.=-+        ..||++||-.+=++++-+ .+      ..+..|+..|+-+|     =|..
T Consensus       412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray-s~------~~l~p~l~~L~s~LL~~AlFDre  484 (1133)
T KOG1943|consen  412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY-SP------SDLKPVLQSLASALLIVALFDRE  484 (1133)
T ss_pred             CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC-Ch------hhhhHHHHHHHHHHHHHHhcCch
Confidence            2334468999999999885433        689999999999999988 22      11233555455444     3667


Q ss_pred             HhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHHhccccCcccHHHHHHHHHHh-
Q 002638          179 KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC-  254 (898)
Q Consensus       179 k~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k---aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~-  254 (898)
                      -++--||+.||...+---++.+         .=+.++.+-+|-   .+..++..|.-.+   +.++.|...++..|+.. 
T Consensus       485 vncRRAAsAAlqE~VGR~~n~p---------~Gi~Lis~~dy~sV~~rsNcy~~l~~~i---a~~~~y~~~~f~~L~t~K  552 (1133)
T KOG1943|consen  485 VNCRRAASAALQENVGRQGNFP---------HGISLISTIDYFSVTNRSNCYLDLCVSI---AEFSGYREPVFNHLLTKK  552 (1133)
T ss_pred             hhHhHHHHHHHHHHhccCCCCC---------CchhhhhhcchhhhhhhhhHHHHHhHHH---HhhhhHHHHHHHHHHhcc
Confidence            7788889888887775422211         112233443332   2223333333322   46777888887776654 


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHhcchHHH-hhHHHHHHHHH
Q 002638          255 LGSTDWATRKAAADALSALALHSSNLVI-DGATSTLTVLE  293 (898)
Q Consensus       255 LsddDW~vRKaA~EaL~sLA~avge~L~-Py~~~~I~~LE  293 (898)
                      +.+=|-.+|..|+.+|..|....++.+. -|+.++|....
T Consensus       553 v~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l  592 (1133)
T KOG1943|consen  553 VCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL  592 (1133)
T ss_pred             cccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence            7777888999999999999999998777 44677776554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.44  E-value=0.39  Score=59.29  Aligned_cols=156  Identities=17%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhH
Q 002638           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV  118 (898)
Q Consensus        39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhL  118 (898)
                      +.|=..|+.... ..|.+..|.-.--|..+++. .|+..-..++.++...+++++..|-.|++.++.+=      +...+
T Consensus        54 ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~  125 (757)
T COG5096          54 SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELL  125 (757)
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHH
Confidence            344444444444 45677777777778877764 34343345667777778899999999998886552      34567


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (898)
Q Consensus       119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~-lL~pL~eaL~eqnk~VQegAasALAkiIE~a~  197 (898)
                      +.+++.|.+.|.|+.+.||..|.-+|+.|-+.=-+       -.... ++..+-+.+.+.+|.|-..|..+|..+.+.  
T Consensus       126 ~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e--  196 (757)
T COG5096         126 GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE--  196 (757)
T ss_pred             HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh--
Confidence            78899999999999999999999988876643210       11222 344445555788999999999999888875  


Q ss_pred             CCCchhHHHHHHHHH
Q 002638          198 DPPVVAFQKLCARIC  212 (898)
Q Consensus       198 d~~~~yL~~LlPRLl  212 (898)
                       ...+|+..++-.+-
T Consensus       197 -~a~~~~~~~~~~i~  210 (757)
T COG5096         197 -LAHGYSLEVILRIP  210 (757)
T ss_pred             -hhhhHHHHHHHHhh
Confidence             33455554443333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.32  Score=60.11  Aligned_cols=223  Identities=12%  Similarity=0.137  Sum_probs=152.6

Q ss_pred             HHHHHHcCCChh--HHHHHHHHHHHHHhcCCCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH
Q 002638           45 ILTSLSKLADRD--THQIAIEDLEKTIQTLSQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT  119 (898)
Q Consensus        45 ll~~L~KLsDrD--T~k~Aa~eLD~Ia~~L~pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp  119 (898)
                      +-..+..+.|..  ++..|+.+|..++++=.+..   -..+|..+.++..+.++++==.||..+..+|+.+++.+.|-| 
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL-  807 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDL-  807 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHH-
Confidence            444556665444  78899999999998432211   344577777888899999999999999999999888876544 


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHh
Q 002638          120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       120 kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL----~eqnk~VQegAasALAkiIE~  195 (898)
                        ..+....=+-+.+.-|--.+++|+.++...   +     +.+..+..+|+...    .+++-...+.++..|..+|.-
T Consensus       808 --~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~---G-----el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~  877 (982)
T KOG4653|consen  808 --SEEYLSEKKKLQTDYRLKVGEAILKVAQAL---G-----ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL  877 (982)
T ss_pred             --HHHHHhcccCCCccceehHHHHHHHHHHHh---c-----cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence              444444333343445555678888888887   2     44555666666665    355555678899999999987


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH-hccccCcc----cHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 002638          196 ASDPPVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLS-QVGAIAPQ----SLEPLLQSIHECL-GSTDWATRKAAAD  268 (898)
Q Consensus       196 a~d~~~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA-~vGa~~~p----yld~lLp~L~e~L-sddDW~vRKaA~E  268 (898)
                      ..-.....+..++..++.+.... .+.+|-+++.+|..+- +.|....|    |+-.....+.... .++|-.+|..||.
T Consensus       878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            65555568888888888888764 6778889999888875 34532222    2223333333332 3466678999999


Q ss_pred             HHHHHHHhcc
Q 002638          269 ALSALALHSS  278 (898)
Q Consensus       269 aL~sLA~avg  278 (898)
                      ||-.|-.++.
T Consensus       958 ~leei~a~l~  967 (982)
T KOG4653|consen  958 CLEEIQAALE  967 (982)
T ss_pred             HHHHHHHHHH
Confidence            9888777665

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.37  E-value=0.0062  Score=45.17  Aligned_cols=30  Identities=37%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638          247 LLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       247 lLp~L~e~LsddDW~vRKaA~EaL~sLA~a  276 (898)
                      +||.+++++.|++|.+|.+|+.+|+.|+..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.37  E-value=0.074  Score=65.41  Aligned_cols=152  Identities=17%  Similarity=0.249  Sum_probs=113.6

Q ss_pred             HHHHHhcC-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002638           65 LEKTIQTL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDS  143 (898)
Q Consensus        65 LD~Ia~~L-~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~t  143 (898)
                      +.+++.++ -.+.++.|++.+.-...+.+...||-+-+-|...++.+++...    --+.++.+-|+||++.+|..|..+
T Consensus        40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~  115 (757)
T COG5096          40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRT  115 (757)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHH
Confidence            45555554 3456999999998777788899999999999999999995421    237789999999999999999988


Q ss_pred             HHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhh
Q 002638          144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKLLSNQNFMA  222 (898)
Q Consensus       144 LG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~-LlPRLlkLLks~~~ka  222 (898)
                      ++.|     +     ..+.+..+++|+-+++.+.++.|-..|+.|+.++-+-.++.   |.+. ++..+..++.+.+..+
T Consensus       116 ls~l-----~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~V  182 (757)
T COG5096         116 LSLL-----R-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIV  182 (757)
T ss_pred             HHhc-----C-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchH
Confidence            8743     1     23668899999999999999999999999999998743332   1222 4455555666666666


Q ss_pred             HHHHHHHHHHH
Q 002638          223 KASLLPVVGSL  233 (898)
Q Consensus       223 K~alL~aIgSL  233 (898)
                      .+.++.++..+
T Consensus       183 i~nAl~sl~~i  193 (757)
T COG5096         183 IANALASLAEI  193 (757)
T ss_pred             HHHHHHHHHHh
Confidence            66555554443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.14  Score=62.43  Aligned_cols=217  Identities=20%  Similarity=0.311  Sum_probs=150.3

Q ss_pred             chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002638           31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL  109 (898)
Q Consensus        31 ~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~-pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg  109 (898)
                      +..++-+.+++|.++...-.     +.++.|+   .+++..+. ..++..+++-+...++..+-..+|-+.+-+.+-|.+
T Consensus         8 ~~~~k~ei~elks~l~s~~~-----~kr~~a~---kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~   79 (734)
T KOG1061|consen    8 STDKKGEIPELKSQLNSQSK-----EKRKDAV---KKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG   79 (734)
T ss_pred             CcchhhhchHHHHHhhhhhh-----hhHHHHH---HHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc
Confidence            34457799999999943333     5566665   55555542 335556666666566667788999999999999999


Q ss_pred             hchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638          110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (898)
Q Consensus       110 ~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasAL  189 (898)
                      +++.-.-    -+.++++-..|+++.+|..|..++|.+-          ....+..++.||..++.+.++.|+..|+.|.
T Consensus        80 ~P~~a~~----avnt~~kD~~d~np~iR~lAlrtm~~l~----------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~v  145 (734)
T KOG1061|consen   80 KPDLAIL----AVNTFLKDCEDPNPLIRALALRTMGCLR----------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCV  145 (734)
T ss_pred             CchHHHh----hhhhhhccCCCCCHHHHHHHhhceeeEe----------ehHHHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence            9876221    2678999999999999999988776431          2355777899999999999999999999999


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc------ccCcccHHHHHHHHHHhhCCCCHHHH
Q 002638          190 AKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG------AIAPQSLEPLLQSIHECLGSTDWATR  263 (898)
Q Consensus       190 AkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG------a~~~pyld~lLp~L~e~LsddDW~vR  263 (898)
                      +++-...++..  .-..+++.|-.++.+.+..+-+.++.++.-+....      ....+++..+|..|-+|   ..|.- 
T Consensus       146 akl~~~~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec---~EW~q-  219 (734)
T KOG1061|consen  146 AKLFDIDPDLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC---TEWGQ-  219 (734)
T ss_pred             HHhhcCChhhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh---hhhhH-
Confidence            99876433321  11236777777888888888778888887775322      12244444444443333   45664 


Q ss_pred             HHHHHHHHHHHHhcc
Q 002638          264 KAAADALSALALHSS  278 (898)
Q Consensus       264 KaA~EaL~sLA~avg  278 (898)
                         +..|..++..++
T Consensus       220 ---i~IL~~l~~y~p  231 (734)
T KOG1061|consen  220 ---IFILDCLAEYVP  231 (734)
T ss_pred             ---HHHHHHHHhcCC
Confidence               566666777776

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.27  E-value=0.11  Score=52.64  Aligned_cols=137  Identities=15%  Similarity=0.144  Sum_probs=98.8

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh-chhchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002638           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH-SELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN  153 (898)
Q Consensus        76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~-gd~I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik  153 (898)
                      .+.-+...|..-.++.++..|-.++.+++++++-| .+.+..|-..-+..+++.|+.+++ .+..+|+.+++.|...+.+
T Consensus        22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35666666666667888999999999999999999 566778878888888888888875 7799999999999998844


Q ss_pred             cc---ccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002638          154 GK---EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL  214 (898)
Q Consensus       154 ~~---~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkL  214 (898)
                      -.   -+......+.|+.+|+..+.+  ..+...+..+|..++...+....++..++-..+..+
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l  163 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL  163 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence            21   011123455666666665543  566777888888888877766666666554444433

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.85  Score=55.90  Aligned_cols=155  Identities=12%  Similarity=0.128  Sum_probs=94.9

Q ss_pred             CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHH--------HH
Q 002638           73 SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--------SI  144 (898)
Q Consensus        73 ~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~--------tL  144 (898)
                      .||.+.++++.|.+.+.+..++|||-|+++++.|-.. .+.+.|--|.++...+-+=+||. .-|+|-.-        ++
T Consensus       128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl  205 (948)
T KOG1058|consen  128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERAL  205 (948)
T ss_pred             cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHH
Confidence            3677999999999999999999999999999988765 45667777888887777666664 12222211        11


Q ss_pred             HHHHHHHhc-cccc----------------CCchhHHhhHHHHHHHHh-----------------cCCHhHHHHHHHHHH
Q 002638          145 GSLSKLYLN-GKEE----------------NNGTVVGLFVKPLFEAMM-----------------EQNKGVQSGAAMCMA  190 (898)
Q Consensus       145 G~LA~~lik-~~~e----------------~~~~~~~~lL~pL~eaL~-----------------eqnk~VQegAasALA  190 (898)
                      .-|...+.+ +.+.                .....-..|++.++..|.                 .+++.+-.+|+.|+-
T Consensus       206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i  285 (948)
T KOG1058|consen  206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYI  285 (948)
T ss_pred             HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHH
Confidence            111111100 0000                001112334555555552                 246777788888888


Q ss_pred             HHHHhcCC----CC------------chhHHHHHHHHHHHhcCCchhhHHHHHHH
Q 002638          191 KMVECASD----PP------------VVAFQKLCARICKLLSNQNFMAKASLLPV  229 (898)
Q Consensus       191 kiIE~a~d----~~------------~~yL~~LlPRLlkLLks~~~kaK~alL~a  229 (898)
                      .+++...+    ++            ...|..|+--++.+|++++..++.-+|+.
T Consensus       286 ~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi  340 (948)
T KOG1058|consen  286 DLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI  340 (948)
T ss_pred             HHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence            88776422    11            12366777778888888877666544443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.25  Score=60.55  Aligned_cols=251  Identities=14%  Similarity=0.124  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHhhhcC--------CCChhhHHHHH-HHHHHHHHHhchhchhhHHHHHHHHHHhhc
Q 002638           60 IAIEDLEKTIQTLSQESLPMLLNCLYESSN--------DPKPAVKKESV-RLLALVCELHSELTSTHVTKIISHIVKRLK  130 (898)
Q Consensus        60 ~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~--------s~k~~vRKeAI-lLLG~IAEg~gd~I~PhLpkIL~~IlrrLk  130 (898)
                      ||-.-..-+..+++.=..|+++..|....+        +.+...+|.|+ -++|..+- +--.+.++=.-+...++.-|.
T Consensus       416 CaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~-~l~~~~dF~~Wl~~~llpEl~  494 (978)
T KOG1993|consen  416 CAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAY-ELSNILDFDKWLQEALLPELA  494 (978)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHhhCHHhh
Confidence            444444444454444346777887754432        23455666654 45555444 333344432223333333333


Q ss_pred             -C-C-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhc---CCCCchh
Q 002638          131 -D-S-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECA---SDPPVVA  203 (898)
Q Consensus       131 -D-p-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq-nk~VQegAasALAkiIE~a---~d~~~~y  203 (898)
                       | + --.+|.-..|.||..++.=      ...+.-+.+...++..|.++ +..|-.+++.+|..++|+.   ++...+|
T Consensus       495 ~~~~~~RiiRRRVa~ilg~Wvsvq------~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~  568 (978)
T KOG1993|consen  495 NDHGNSRIIRRRVAWILGQWVSVQ------QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY  568 (978)
T ss_pred             hcccchhHHHHHHHHHHhhhhhee------chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh
Confidence             1 1 2356777788887766622      12355666777777777776 7888899999999999985   5666788


Q ss_pred             HHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHhcc-
Q 002638          204 FQKLCARICKLLSN-QNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECL--GSTDWATRKAAADALSALALHSS-  278 (898)
Q Consensus       204 L~~LlPRLlkLLks-~~~kaK~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~L--sddDW~vRKaA~EaL~sLA~avg-  278 (898)
                      ++.+---++++|+. ..+.+|...|+.++.++ .++....||...+++.|-..-  ..+..-+|-+.+-+|-.+..++| 
T Consensus       569 lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~  648 (978)
T KOG1993|consen  569 LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA  648 (978)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc
Confidence            88887778888875 35778889999999996 466666688888777665542  22456789999999999999999 


Q ss_pred             --hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          279 --NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       279 --e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                        ..+-|++=++|++.-  --...++|- ..-.++++|..+-.-
T Consensus       649 qS~~~~~fL~pVIel~~--D~~sP~hv~-L~EDgmeLW~~~L~n  689 (978)
T KOG1993|consen  649 QSFEFYPFLYPVIELST--DPSSPEHVY-LLEDGMELWLTTLMN  689 (978)
T ss_pred             CCccchHHHHHHHHHhc--CCCCCceee-hhhhHHHHHHHHHhc
Confidence              446666666665443  111222222 223589999988743

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.14  E-value=0.07  Score=58.31  Aligned_cols=202  Identities=19%  Similarity=0.245  Sum_probs=108.1

Q ss_pred             CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           75 ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        75 e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      +.++.+..-|.  +.++.|.+|-+|..+||.+.   -..+       ++++-+-.+||-..||.+|--+|.++=..-.-.
T Consensus        67 ~Av~~l~~vl~--desq~pmvRhEAaealga~~---~~~~-------~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   67 DAVPVLVEVLL--DESQEPMVRHEAAEALGAIG---DPES-------LEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             hhhHHHHHHhc--ccccchHHHHHHHHHHHhhc---chhh-------HHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            34666666555  34577999999999999886   2223       444444557999999999888887764322100


Q ss_pred             cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS  234 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA  234 (898)
                      .   . ....    |+ .. .++.+..-.....-|...+=   +.-.+    +..|-..++.=.+.....++...+-++.
T Consensus       135 ~---~-~~~~----p~-~S-vdPa~p~~~ssv~~lr~~ll---d~t~~----l~~Ry~amF~LRn~g~EeaI~al~~~l~  197 (289)
T KOG0567|consen  135 K---I-ANSS----PY-IS-VDPAPPANLSSVHELRAELL---DETKP----LFERYRAMFYLRNIGTEEAINALIDGLA  197 (289)
T ss_pred             c---c-cccC----cc-cc-CCCCCccccccHHHHHHHHH---hcchh----HHHHHhhhhHhhccCcHHHHHHHHHhcc
Confidence            0   0 0000    00 01 23333311111222222221   11111    2222222221111111112222222221


Q ss_pred             hccccCc---------ccHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002638          235 QVGAIAP---------QSLEPLLQSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV  303 (898)
Q Consensus       235 ~vGa~~~---------pyld~lLp~L~e~Lsd--dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpV  303 (898)
                      .-.+.|.         ---+..+|.|.+.|.+  +...+|-.|+++|+.||.          +.|+++|+..-.|..+-|
T Consensus       198 ~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv  267 (289)
T KOG0567|consen  198 DDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVV  267 (289)
T ss_pred             cchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHH
Confidence            0001111         0112346777777765  568999999999999986          789999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 002638          304 RDSMNEALQLWK  315 (898)
Q Consensus       304 RD~A~eALelWK  315 (898)
                      |+...-||+...
T Consensus       268 ~esc~valdm~e  279 (289)
T KOG0567|consen  268 RESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            987777777654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.07  E-value=0.11  Score=56.54  Aligned_cols=182  Identities=15%  Similarity=0.194  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCCHHH--HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch--h
Q 002638           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPM--LLNCLYESSNDPKPAVKKESVRLLALVCELHSE--L  113 (898)
Q Consensus        39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~-L~pe~Lp~--fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd--~  113 (898)
                      .+| ++++..|....|...+..|+-.|-..+.. ...+.+.-  -++.|...++++++.+|+.|+.+|.+++.....  .
T Consensus        12 ~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~   90 (254)
T PF04826_consen   12 QEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ   90 (254)
T ss_pred             HHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence            445 78888888889999999999888876542 11111111  145555556678899999999999988776553  3


Q ss_pred             chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV  193 (898)
Q Consensus       114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI  193 (898)
                      +..|+++|+..++..  .-++.++.++...|+.|+  +..    +....+..+++.|+..|...+..+|.-+.-+|..+-
T Consensus        91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~~----~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VTN----DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CCc----chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            677888888877663  247788888888888775  211    112446678888999998888899988888888887


Q ss_pred             HhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002638          194 ECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGS  232 (898)
Q Consensus       194 E~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgS  232 (898)
                      ++.. ...+++. +.+..|+.+|+...  .+..++.+|--
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~  199 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTF  199 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCC--ccHHHHHHHHH
Confidence            7531 1112222 45677777887542  23344444433

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.03  E-value=0.083  Score=55.02  Aligned_cols=93  Identities=11%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg-~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~  155 (898)
                      +..||+.+.+-....+-++|--|...+.-+.+. .++.+.|.||+++.-|.+.|.-.++.|..+|..+|-.|+.-. .  
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~-~--  112 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS-D--  112 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh-h--
Confidence            778888888888777888888888888888887 668899999999999999999999999999999999994433 1  


Q ss_pred             ccCCchhHHhhHHHHHHHH
Q 002638          156 EENNGTVVGLFVKPLFEAM  174 (898)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL  174 (898)
                        ..++.+..+++.|+-.|
T Consensus       113 --~vG~aLvPyyrqLLp~l  129 (183)
T PF10274_consen  113 --MVGEALVPYYRQLLPVL  129 (183)
T ss_pred             --hhhHHHHHHHHHHHHHH
Confidence              01233445555555555

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.01  E-value=0.95  Score=51.36  Aligned_cols=211  Identities=12%  Similarity=0.171  Sum_probs=131.7

Q ss_pred             HHhhhcCCCChhhHHHHHHHHHHHHHHhchh--------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           83 CLYESSNDPKPAVKKESVRLLALVCELHSEL--------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        83 ~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~--------I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      .|...+...+...||.+..++.++.+...+.        +..|.|.|+..++++-.+||..+      ..|.+.+.+++.
T Consensus        80 ~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlRec~k~  153 (335)
T PF08569_consen   80 LLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLRECIKH  153 (335)
T ss_dssp             HHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHHHHTTS
T ss_pred             HHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHHHHHhh
Confidence            3344445677889999999999998876433        33345999999999999998422      234444444332


Q ss_pred             cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHHhcCCchhhHHHHHHHH
Q 002638          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPVV  230 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~y----L~~LlPRLlkLLks~~~kaK~alL~aI  230 (898)
                      ..=..--.....+-.+|+.+..++=.|..-|+..+..++-.-+....+|    .+.....+.++|.+.+|-+|-..|.++
T Consensus       154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL  233 (335)
T PF08569_consen  154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL  233 (335)
T ss_dssp             HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence            0000000011233347777777788888888888887776543333444    556778999999999999999999999


Q ss_pred             HHHHh--cc-ccCcccHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--h----HHHhhHHHHHHHHHhhhcCC
Q 002638          231 GSLSQ--VG-AIAPQSLE--PLLQSIHECLGSTDWATRKAAADALSALALHSS--N----LVIDGATSTLTVLEACRFDK  299 (898)
Q Consensus       231 gSLA~--vG-a~~~pyld--~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e----~L~Py~~~~I~~LE~~RfDK  299 (898)
                      |-+.-  .. ..+..|+.  ..|-.+...|.|....++-.|...+-.....--  +    .+..-.+.+|++|.....|+
T Consensus       234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~  313 (335)
T PF08569_consen  234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred             HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99962  22 22222332  233345578899999999998888776544322  2    23333578899999888887

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.96  E-value=1.3  Score=55.15  Aligned_cols=214  Identities=17%  Similarity=0.141  Sum_probs=142.5

Q ss_pred             HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        77 Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      +..||....... .+..+++|-.+++++--.+   + .-+.|.+|.|+-.|+.-..+....|-....++|...+..=  +
T Consensus       488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d--p  562 (1005)
T KOG2274|consen  488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD--P  562 (1005)
T ss_pred             HHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC--h
Confidence            344444333332 4566778888888774443   4 3479999999999999999999999999999888777654  2


Q ss_pred             cccCCchhHHhhHHHHHHHH---hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh----hHHHHH
Q 002638          155 KEENNGTVVGLFVKPLFEAM---MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM----AKASLL  227 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL---~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k----aK~alL  227 (898)
                      .+.   ......+.|++-++   ...+|.|-.-+--|+.++++.+... .++-..++|-|+.+|..+.-+    .-..++
T Consensus       563 ef~---as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~~iPslisil~~~~~~~~~~l~~~ai  638 (1005)
T KOG2274|consen  563 EFA---ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQERLIPSLISVLQLNADKAPAGLCAIAI  638 (1005)
T ss_pred             hhh---hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHcCcccccCchhhHHHH
Confidence            221   11223333444444   3456666667888888888864321 356778999999999987633    345788


Q ss_pred             HHHHHHHhcc--ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhh-------HHHHHHHHHhhhc
Q 002638          228 PVVGSLSQVG--AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDG-------ATSTLTVLEACRF  297 (898)
Q Consensus       228 ~aIgSLA~vG--a~~~pyld~lLp~L~e~-LsddDW~vRKaA~EaL~sLA~avge~L~Py-------~~~~I~~LE~~Rf  297 (898)
                      +.|..++..+  ......+..+.|++.+| |..+|-.+--.+-|||.++.....+.+..+       +-.+|.++. ..+
T Consensus       639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s-qLL  717 (1005)
T KOG2274|consen  639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS-QLL  717 (1005)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH-HHc
Confidence            8888887654  33344556677777777 566888899999999999887765444433       225555555 444


Q ss_pred             CCC
Q 002638          298 DKI  300 (898)
Q Consensus       298 DKv  300 (898)
                      |+.
T Consensus       718 dp~  720 (1005)
T KOG2274|consen  718 DPE  720 (1005)
T ss_pred             CCc
Confidence            443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.95  E-value=0.12  Score=65.41  Aligned_cols=171  Identities=17%  Similarity=0.206  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHhcc-cccCCchhHHhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 002638          139 ACRDSIGSLSKLYLNG-KEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK  213 (898)
Q Consensus       139 Ac~~tLG~LA~~lik~-~~e~~~~~~~~lL~pL~eaL~----eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlk  213 (898)
                      ++-+.+.-+...+... -.-+....+..|+|-+.+.+.    -++|..|.+|..||.+++=    ....|...=+|-|+.
T Consensus       892 tseDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----iSa~fces~l~llft  967 (1251)
T KOG0414|consen  892 TSEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----ISAEFCESHLPLLFT  967 (1251)
T ss_pred             CcchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Confidence            3344455555555331 111124667788888888883    3589999999999999872    223566677788888


Q ss_pred             Hhc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH
Q 002638          214 LLS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVL  292 (898)
Q Consensus       214 LLk-s~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~L  292 (898)
                      ++. +|+..+|..++-++|-++-   -|+..++..-+.|...|.|++..+||.|.-+|..|-..--=++.-|+..    |
T Consensus       968 imeksp~p~IRsN~VvalgDlav---~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e----M 1040 (1251)
T KOG0414|consen  968 IMEKSPSPRIRSNLVVALGDLAV---RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE----M 1040 (1251)
T ss_pred             HHhcCCCceeeecchheccchhh---hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH----H
Confidence            887 8999999888777777753   5788888999999999999999999999999998765443333333333    3


Q ss_pred             HhhhcCCChhhHHHHHHHHHHHHHhhcCCCC
Q 002638          293 EACRFDKIKPVRDSMNEALQLWKKIAGKVDV  323 (898)
Q Consensus       293 E~~RfDKvKpVRD~A~eALelWK~La~~~d~  323 (898)
                      --|--|.+..+|+.   |=.|+|+++.+++.
T Consensus      1041 A~cl~D~~~~Isdl---Ak~FF~Els~k~n~ 1068 (1251)
T KOG0414|consen 1041 ALCLEDPNAEISDL---AKSFFKELSSKGNT 1068 (1251)
T ss_pred             HHHhcCCcHHHHHH---HHHHHHHhhhcccc
Confidence            34555999988887   77899999977544

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.93  E-value=0.061  Score=60.78  Aligned_cols=132  Identities=20%  Similarity=0.264  Sum_probs=88.5

Q ss_pred             HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHHh
Q 002638          163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-------NFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~-------~~kaK~alL~aIgSLA~  235 (898)
                      ...|+.-+.+++.+.+......|..+|.   .      .+.|+.|+|+|+..+...       +...-..++.++.++..
T Consensus       176 lq~yf~~It~a~~~~~~~~r~~aL~sL~---t------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~  246 (343)
T cd08050         176 LQLYFEEITEALVGSNEEKRREALQSLR---T------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD  246 (343)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhc---c------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence            5667777888886666555544443321   1      134677888888777543       12222245555666654


Q ss_pred             ccc-cCcccHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002638          236 VGA-IAPQSLEPLLQSIHECL----------GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV  303 (898)
Q Consensus       236 vGa-~~~pyld~lLp~L~e~L----------sddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpV  303 (898)
                      -.. ...+|+-.+||+++.|+          .++.|.+|.-|+.+|+.|....+........++++.+...-+|..+++
T Consensus       247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~  325 (343)
T cd08050         247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL  325 (343)
T ss_pred             CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence            222 35899999999999986          236699999999999999999985444445677777777777877754

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.83  Score=57.32  Aligned_cols=224  Identities=13%  Similarity=0.119  Sum_probs=142.8

Q ss_pred             HHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-----
Q 002638           42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-----  114 (898)
Q Consensus        42 K~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I-----  114 (898)
                      .+.+++||...  +|.+.|+.|=+.|.++-.  .| .+...|.+|.- ..+..-++|.+|..-|++.+..++..-     
T Consensus         3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K--~p-gFv~~lLqIi~-~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~   78 (1010)
T KOG1991|consen    3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEK--QP-GFVSSLLQIIM-DDGVPLPVRQAAAIYLKNKITKSWSSHEAPGR   78 (1010)
T ss_pred             hHHHHHHHHHhcCCChHHHHHHHHHHHHhhc--CC-cHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence            35678888766  677899999989988876  34 33333333332 234456789999999999998877543     


Q ss_pred             -----hhhHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHH
Q 002638          115 -----STHVTKIISHIVKRLKDSDSGMKEACRDSI-GSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC  188 (898)
Q Consensus       115 -----~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tL-G~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasA  188 (898)
                           ..--+.|...|+..+-.....+|-+-..++ +.+...+        .+.|+.+++..-..|..++.+.--||..|
T Consensus        79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~--------p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~  150 (1010)
T KOG1991|consen   79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADY--------PEQWPGLLDKIKNLLQSQDANHVYGALLC  150 (1010)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC--------cccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence                 112344555666665555777887766666 3333333        25699999999999999999999999999


Q ss_pred             HHHHHHhcC-------CCCc----hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH----hcc--------ccCcccHH
Q 002638          189 MAKMVECAS-------DPPV----VAFQKLCARICKLLSNQNFMAKASLLPVVGSLS----QVG--------AIAPQSLE  245 (898)
Q Consensus       189 LAkiIE~a~-------d~~~----~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA----~vG--------a~~~pyld  245 (898)
                      |..++..-+       ..+.    .+++.|+.++..+|..++++.-. ++-.|-.+.    .-.        ..|.+.+.
T Consensus       151 l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~e-l~klIlKifks~~~~~LP~~L~~~~~f~~W~~  229 (1010)
T KOG1991|consen  151 LYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVE-LQKLILKIFKSLIYYELPLELSAPETFTSWME  229 (1010)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence            999997641       1111    34566666666677777776432 222333322    111        12333333


Q ss_pred             HHHHHHHHhh-----C-C-------CCHHHHHHHHHHHHHHHHhcc
Q 002638          246 PLLQSIHECL-----G-S-------TDWATRKAAADALSALALHSS  278 (898)
Q Consensus       246 ~lLp~L~e~L-----s-d-------dDW~vRKaA~EaL~sLA~avg  278 (898)
                      -++..+..-+     . |       .=|..+|=|+-.|..+-...|
T Consensus       230 l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg  275 (1010)
T KOG1991|consen  230 LFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYG  275 (1010)
T ss_pred             HHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhC
Confidence            3443332211     1 1       238899999999999998888

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.27  Score=60.14  Aligned_cols=228  Identities=17%  Similarity=0.134  Sum_probs=113.0

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHHHHHH---------HHhhcCCChHHHHHHHHH
Q 002638           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHI---------VKRLKDSDSGMKEACRDS  143 (898)
Q Consensus        76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkIL~~I---------lrrLkDpDs~VR~Ac~~t  143 (898)
                      .+.+-.+.|+-...++++..|-+|++.|--+|-.|+..+.   .-|+.++.-.         ...|+--...--+.-...
T Consensus       279 ~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~q  358 (865)
T KOG1078|consen  279 ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQ  358 (865)
T ss_pred             hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHH
Confidence            4555666777667888999999999999999998887642   2333333311         111211111001111111


Q ss_pred             HHHHHHHHhcccccC------------CchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 002638          144 IGSLSKLYLNGKEEN------------NGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR  210 (898)
Q Consensus       144 LG~LA~~lik~~~e~------------~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPR  210 (898)
                      |..++..+.++ +--            -...|..++.-|...|- +-.-.-..+..-|+-.++|..++.-...|..||.-
T Consensus       359 I~~fv~disDe-FKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCef  437 (865)
T KOG1078|consen  359 ISSFVSDISDE-FKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEF  437 (865)
T ss_pred             HHHHHHhcccc-ceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            12222222110 000            00113333333333332 11222223344444555554444333344444443


Q ss_pred             HHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638          211 ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (898)
Q Consensus       211 LlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~  290 (898)
                      +.   +   +.-...+...++-+ +......+.=...+..+.+.+.-++.-+|.+|..+|..++ +-.+.+   .+++..
T Consensus       438 IE---D---ce~~~i~~rILhlL-G~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg-~~~~~l---~~sI~v  506 (865)
T KOG1078|consen  438 IE---D---CEFTQIAVRILHLL-GKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG-AQDVVL---LPSILV  506 (865)
T ss_pred             HH---h---ccchHHHHHHHHHH-hccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh-cCCCCc---cccHHH
Confidence            33   1   11111112222221 1111122222234444555555567889999999999988 222333   256777


Q ss_pred             HHHhhhcCCChhhHHHHHHHHHHHH
Q 002638          291 VLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       291 ~LE~~RfDKvKpVRD~A~eALelWK  315 (898)
                      .|..|.+|++..|||.|.-+|....
T Consensus       507 llkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  507 LLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHhh
Confidence            8889999999999999888877765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.88  E-value=0.34  Score=57.67  Aligned_cols=204  Identities=17%  Similarity=0.176  Sum_probs=128.2

Q ss_pred             CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I-~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      .+..+-++|..-..+.--.+--++-+++-.+++   +.+ ..++...++.+..-|+-+....|-+|..+|.+|+..+.+ 
T Consensus       261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~---~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-  336 (898)
T COG5240         261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSE---ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-  336 (898)
T ss_pred             HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHH---hccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-
Confidence            355556666555544334455555555544444   444 346778888888889999999999999999999988832 


Q ss_pred             cccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002638          155 KEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL  233 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL  233 (898)
                              ...++.+=++.| .+.|+.+-.   +|+..++..-.   .+-++.|+..+..++.+-+-..|-.++++|.++
T Consensus       337 --------kv~vcN~evEsLIsd~Nr~Ist---yAITtLLKTGt---~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsL  402 (898)
T COG5240         337 --------KVSVCNKEVESLISDENRTIST---YAITTLLKTGT---EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSL  402 (898)
T ss_pred             --------eeeecChhHHHHhhcccccchH---HHHHHHHHcCc---hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHH
Confidence                    122444545555 677877654   45555554322   233455555555555542222334778888888


Q ss_pred             HhccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCC
Q 002638          234 SQVGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKI  300 (898)
Q Consensus       234 A~vGa~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKv  300 (898)
                      .-   .|+.--..++..|.+.|.+ .-...++.++|+|..+....|+-=.--+..+-.++|.|.|.++
T Consensus       403 sl---~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I  467 (898)
T COG5240         403 SL---LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQI  467 (898)
T ss_pred             Hh---hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHH
Confidence            53   4665566667677666554 4678899999999998888875333334444556666766665

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.74  E-value=0.093  Score=53.23  Aligned_cols=142  Identities=11%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-----SDSGMKEACRDSIGSLSKL  150 (898)
Q Consensus        77 Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-----pDs~VR~Ac~~tLG~LA~~  150 (898)
                      +|.+|..|..-+ .+..+..|+|++++||.+.     ++-||.-+.+.   ..+.+     ......+....     ...
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~---~~~~~~~~~~~~~~~~~~~l~-----~~~   74 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQ---KSLDSKSSENSNDESTDISLP-----MMG   74 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhccc---ccCCccccccccccchhhHHh-----hcc
Confidence            455555555443 2345999999999999874     46666655222   22221     11112221111     111


Q ss_pred             HhcccccCCchhHH-hhHHHHHHHHhcCC-HhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 002638          151 YLNGKEENNGTVVG-LFVKPLFEAMMEQN-KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLP  228 (898)
Q Consensus       151 lik~~~e~~~~~~~-~lL~pL~eaL~eqn-k~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~  228 (898)
                      + .+   ..+++++ .++..|+..|.++. .....++..|+-.++...+....+||++++|.++..+++-....++.++.
T Consensus        75 ~-~~---~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~  150 (160)
T PF11865_consen   75 I-SP---SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQ  150 (160)
T ss_pred             C-CC---chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence            1 00   1123333 35567777776653 33445788888888877766778999999999999999655577777777


Q ss_pred             HHHHHHh
Q 002638          229 VVGSLSQ  235 (898)
Q Consensus       229 aIgSLA~  235 (898)
                      -++.++.
T Consensus       151 qL~~lv~  157 (160)
T PF11865_consen  151 QLADLVS  157 (160)
T ss_pred             HHHHHHH
Confidence            7777653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.72  E-value=1  Score=55.01  Aligned_cols=197  Identities=17%  Similarity=0.189  Sum_probs=122.2

Q ss_pred             HHHHHHHHhcC---CC--CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638           62 IEDLEKTIQTL---SQ--ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        62 a~eLD~Ia~~L---~p--e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V  136 (898)
                      +.-|.+++..|   ++  +.+..++.+|+....+.+-.||.-++.+|..+...-.+---....+++-.+..||.|-.|.|
T Consensus        63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V  142 (892)
T KOG2025|consen   63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV  142 (892)
T ss_pred             HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence            34445555544   33  23788899999888888899999999999888873333335567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHH-------HHHHhcCCCCch----hH
Q 002638          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMA-------KMVECASDPPVV----AF  204 (898)
Q Consensus       137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALA-------kiIE~a~d~~~~----yL  204 (898)
                      |-.|+.++.+|=..-.++       .. .+...|...+ .++++.|..+|.+|++       .++|.+.+....    ..
T Consensus       143 RiqAv~aLsrlQ~d~~de-------e~-~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY  214 (892)
T KOG2025|consen  143 RIQAVLALSRLQGDPKDE-------EC-PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVY  214 (892)
T ss_pred             HHHHHHHHHHHhcCCCCC-------cc-cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence            999999988765422111       12 2444444445 5789999999888764       466655443321    13


Q ss_pred             HHHHHHH--------------HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 002638          205 QKLCARI--------------CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST-DWATRKAAADA  269 (898)
Q Consensus       205 ~~LlPRL--------------lkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsdd-DW~vRKaA~Ea  269 (898)
                      ..++|++              -.-|++..+-+|.++.++|.+=      ...+.+.=++-+++.|.-+ ...++..|+++
T Consensus       215 ~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~------Wl~~~dgni~ElL~~ldvsnss~vavk~lea  288 (892)
T KOG2025|consen  215 ERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG------WLRFSDGNILELLERLDVSNSSEVAVKALEA  288 (892)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH------HhhhccccHHHHHHHhccccchHHHHHHHHH
Confidence            3344443              2222333444555554444331      1112222334445555443 34777788888


Q ss_pred             HHH
Q 002638          270 LSA  272 (898)
Q Consensus       270 L~s  272 (898)
                      |-.
T Consensus       289 lf~  291 (892)
T KOG2025|consen  289 LFS  291 (892)
T ss_pred             HHH
Confidence            776

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.41  Score=58.97  Aligned_cols=258  Identities=13%  Similarity=0.113  Sum_probs=161.8

Q ss_pred             CChhHHHH-HHHHHHHHHhcCCCCCHHHHHHHH---hhh---cCCCChhhHHHHHHHHHHHHHH-----hc----hhchh
Q 002638           53 ADRDTHQI-AIEDLEKTIQTLSQESLPMLLNCL---YES---SNDPKPAVKKESVRLLALVCEL-----HS----ELTST  116 (898)
Q Consensus        53 sDrDT~k~-Aa~eLD~Ia~~L~pe~Lp~fLs~L---~es---~~s~k~~vRKeAIlLLG~IAEg-----~g----d~I~P  116 (898)
                      +|-|||+- |.+-+..+...+.....+.|..++   .+.   ..+.+|..+..++.++..+|--     ||    ..+.+
T Consensus       373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd  452 (960)
T KOG1992|consen  373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD  452 (960)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence            68888775 455555666666543344444443   332   2477899999999999888755     22    12344


Q ss_pred             hHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638          117 HVTKIISHIVKRLKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       117 hLpkIL~~IlrrLkDp----Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki  192 (898)
                      ........|++-|..|    .|.++..+.+-+-.+=.++       +.++.-.+++.|+..|......|-.-||.|+.++
T Consensus       453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql-------~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki  525 (960)
T KOG1992|consen  453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL-------GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL  525 (960)
T ss_pred             HHHHHHHHhhHHhccCccccccchhhcccceeeeecccC-------ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence            4444455555555553    4777776665444433333       2255667888888888878888888999999998


Q ss_pred             HH---hc------CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCC-----
Q 002638          193 VE---CA------SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGS-----  257 (898)
Q Consensus       193 IE---~a------~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~Lsd-----  257 (898)
                      .=   ..      ...+.+|+-.++..|++.++.|.-.=-+.++.||-.++.+- ....|++..+++.|.+++..     
T Consensus       526 l~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP  605 (960)
T KOG1992|consen  526 LTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP  605 (960)
T ss_pred             cccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence            63   31      22334667777777887777664422236788888887766 45678999999988887543     


Q ss_pred             CCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          258 TDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       258 dDW~vRKaA~EaL~sLA~avg----e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      .+...=--..|+++.+-...+    ..+..+-..++.+++.--...+.   |..=.++++...+--.
T Consensus       606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~---EfiPYvfQlla~lve~  669 (960)
T KOG1992|consen  606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ---EFIPYVFQLLAVLVEH  669 (960)
T ss_pred             CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence            233333344555555444443    44555556666666644444444   7888888888888744

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.26  Score=59.41  Aligned_cols=187  Identities=18%  Similarity=0.209  Sum_probs=126.7

Q ss_pred             hhHHHHHHH-HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638          116 THVTKIISH-IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       116 PhLpkIL~~-IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE  194 (898)
                      +|-++-+.- ++.-..|.|+.||.+|.+++=+|..-+ +        ..........+.|.+.+..|..+|...+--.-.
T Consensus       193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-k--------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn  263 (823)
T KOG2259|consen  193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-K--------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGN  263 (823)
T ss_pred             cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-c--------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            344444444 777788999999999999988888733 2        345567778888888888888877655443333


Q ss_pred             hcCC------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHH-----------------
Q 002638          195 CASD------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQ-----------------  249 (898)
Q Consensus       195 ~a~d------~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld-~lLp-----------------  249 (898)
                      -.+-      ......+...-++|..+.+-...+|..+-.++|.+-++. ....+-++ .+|.                 
T Consensus       264 ~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s  343 (823)
T KOG2259|consen  264 RCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS  343 (823)
T ss_pred             cCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence            2211      112346677788888888877777766666666654333 22211111 1222                 


Q ss_pred             ---------------------------------HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhh
Q 002638          250 ---------------------------------SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACR  296 (898)
Q Consensus       250 ---------------------------------~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~R  296 (898)
                                                       .+...|.|+-..+|++|.+.|+.||...+.    |...++.+|-..-
T Consensus       344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMf  419 (823)
T KOG2259|consen  344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMF  419 (823)
T ss_pred             cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHh
Confidence                                             122335566689999999999999999987    6778888888888


Q ss_pred             cCCChhhHHHHHHHHHHHH
Q 002638          297 FDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       297 fDKvKpVRD~A~eALelWK  315 (898)
                      +|.+..||--++.||....
T Consensus       420 NDE~~~VRL~ai~aL~~Is  438 (823)
T KOG2259|consen  420 NDEIEVVRLKAIFALTMIS  438 (823)
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            8999999988777765543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.71  E-value=0.23  Score=50.51  Aligned_cols=137  Identities=9%  Similarity=0.076  Sum_probs=102.0

Q ss_pred             chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKM  192 (898)
Q Consensus       114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq-nk~VQegAasALAki  192 (898)
                      ....+.+.+..|...|+++++.-|.+.+..++.++.+.--+.+.   ......+..|+..|..+ .+.+-+.|+.+|..+
T Consensus        19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~---~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l   95 (165)
T PF08167_consen   19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILL---SHGSQWLRALLSILEKPDPPSVLEAAIITLTRL   95 (165)
T ss_pred             CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            35578999999999999999999999999999988886212121   22445566677777544 567889999999999


Q ss_pred             HHhcCC-------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhh
Q 002638          193 VECASD-------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECL  255 (898)
Q Consensus       193 IE~a~d-------~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~L  255 (898)
                      ++....       ...+.++.+++-++++++.  ......+++++..+...- ..|.||...+-..+..++
T Consensus        96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll  164 (165)
T PF08167_consen   96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL  164 (165)
T ss_pred             HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence            998622       2236688888888888886  334567888888887643 678888888877776654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.64  E-value=0.093  Score=48.83  Aligned_cols=78  Identities=23%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             hhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHh
Q 002638           86 ESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL  165 (898)
Q Consensus        86 es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~  165 (898)
                      ....++.+++|-+++..|..+++... .....+++|+..++..|+|+|+.|--.|..+++.|+....           ..
T Consensus        10 ~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----------~~   77 (92)
T PF10363_consen   10 SDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----------DE   77 (92)
T ss_pred             HHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----------HH
Confidence            33457789999999999999999877 5566789999999999999999999999999999999982           23


Q ss_pred             hHHHHHHHHh
Q 002638          166 FVKPLFEAMM  175 (898)
Q Consensus       166 lL~pL~eaL~  175 (898)
                      +++.|++.-.
T Consensus        78 vl~~L~~~y~   87 (92)
T PF10363_consen   78 VLPILLDEYA   87 (92)
T ss_pred             HHHHHHHHHh
Confidence            5666666553

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.89  Score=59.33  Aligned_cols=216  Identities=18%  Similarity=0.136  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHH---hh-hcCCCChhhHHHHHHHHHHHHHHhc
Q 002638           38 MVEMKQKILTSLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNCL---YE-SSNDPKPAVKKESVRLLALVCELHS  111 (898)
Q Consensus        38 ~~eLK~rll~~L~KLs--DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L---~e-s~~s~k~~vRKeAIlLLG~IAEg~g  111 (898)
                      ..++..++-.++.||.  |.-|.--|+++|-.++.+.+.+.+-.+|++.   +. -.-+.+..+|......+..+...+.
T Consensus        36 ~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk  115 (1312)
T KOG0803|consen   36 VLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK  115 (1312)
T ss_pred             HhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            3458899999999994  6669999999999999877655443434333   32 2467889999999999999999999


Q ss_pred             hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-----------------
Q 002638          112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-----------------  174 (898)
Q Consensus       112 d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-----------------  174 (898)
                      +.++|||..++|..+-...|.+..|..++-.+.......--      ....|-.+-+.++..+                 
T Consensus       116 k~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek------~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~  189 (1312)
T KOG0803|consen  116 KKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK------DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRT  189 (1312)
T ss_pred             HHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhh------hHHHHHHhhHHHHHHHHHHHhccCccccchhhh
Confidence            99999999999999999999998888887776543322110      0011111111111111                 


Q ss_pred             ------hcCCHhHHHHHHHHHHHHHHh-cCCCCch---h-HH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cccc-
Q 002638          175 ------MEQNKGVQSGAAMCMAKMVEC-ASDPPVV---A-FQ--KLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAI-  239 (898)
Q Consensus       175 ------~eqnk~VQegAasALAkiIE~-a~d~~~~---y-L~--~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~-  239 (898)
                            ....++|-..+..||.++... .++....   + +.  .--..+-++++++...+|.++++++-++.. +-.. 
T Consensus       190 ~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~  269 (1312)
T KOG0803|consen  190 LSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV  269 (1312)
T ss_pred             cchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence                  123456667788888888844 3222211   1 22  234678888899999999999999999875 2222 


Q ss_pred             CcccHHHHHHHHHHhhCCCC
Q 002638          240 APQSLEPLLQSIHECLGSTD  259 (898)
Q Consensus       240 ~~pyld~lLp~L~e~LsddD  259 (898)
                      .+.....+.+.+.....+.|
T Consensus       270 ~~~~~~~l~~~~~~~~~~~d  289 (1312)
T KOG0803|consen  270 MESEKNYLKPVLLGSIDSLD  289 (1312)
T ss_pred             chhhhhHhhHHHHccccccc
Confidence            34444455555555555544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.62  E-value=1.6  Score=46.77  Aligned_cols=194  Identities=16%  Similarity=0.141  Sum_probs=115.5

Q ss_pred             HHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh
Q 002638           49 LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR  128 (898)
Q Consensus        49 L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr  128 (898)
                      +.+-.+...+...+..|-.++.+=. ...++++..|..-....+...+--+++++-.+... .+...|+|..++-....+
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f~~L~~~L~~~~~r   86 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHFPFLQPLLLLLILR   86 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHhh
Confidence            5555666666677777777665322 34666666665544444444455666777666653 333447777776664433


Q ss_pred             ----hcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638          129 ----LKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPV  201 (898)
Q Consensus       129 ----LkDpDs--~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~  201 (898)
                          ..+.+.  .+.-++..++..++...-        ..+..+++.|...| .+.++.+|.-|..+|+.+|+..--.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p--------~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~  158 (234)
T PF12530_consen   87 IPSSFSSKDEFWECLISIAASIRDICCSRP--------DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY  158 (234)
T ss_pred             cccccCCCcchHHHHHHHHHHHHHHHHhCh--------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH
Confidence                222232  222333344555555441        25888999999999 788999999999999999975322222


Q ss_pred             hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh---cc----ccCcccHHHHHHHHHHhhCCCC
Q 002638          202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ---VG----AIAPQSLEPLLQSIHECLGSTD  259 (898)
Q Consensus       202 ~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~---vG----a~~~pyld~lLp~L~e~LsddD  259 (898)
                      ....-|.++|       ....++.++..+.++..   -+    +........++..+-++....+
T Consensus       159 s~w~vl~~~l-------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  159 SAWKVLQKKL-------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHHhc-------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            3344555555       23334556665555542   11    2345566677777778877766

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.82  Score=56.28  Aligned_cols=238  Identities=16%  Similarity=0.249  Sum_probs=151.2

Q ss_pred             HHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHH
Q 002638           43 QKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK  120 (898)
Q Consensus        43 ~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpk  120 (898)
                      .++...|-+|  +.+.++-+.++.+-.|... .|..|.+++.-++-.. ++...++.-=+..|.+++.-.      .+..
T Consensus       321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~-~~~lF~P~lKsFfv~s-sDp~~vk~lKleiLs~La~es------ni~~  392 (968)
T KOG1060|consen  321 TKIAKALVRLLRSNREVQYVVLQNIATISIK-RPTLFEPHLKSFFVRS-SDPTQVKILKLEILSNLANES------NISE  392 (968)
T ss_pred             HHHHHHHHHHHhcCCcchhhhHHHHHHHHhc-chhhhhhhhhceEeec-CCHHHHHHHHHHHHHHHhhhc------cHHH
Confidence            3445555555  7788888888888887753 4544555555444322 222334444555555555422      3455


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP  200 (898)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~  200 (898)
                      |+.-+..=++++|-.+-.+++.+||+.+..+.        ..-+..|..|+..|...+..|-..|...+.++++.-+...
T Consensus       393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence            66666666778888899999999999998883        3356789999999988899999999999999999644332


Q ss_pred             chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002638          201 VVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN  279 (898)
Q Consensus       201 ~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge  279 (898)
                          .+++-+|.+++.+- ...+|+..|=+||-.+.   ..+--+..++..+..-++++...+|-.++...+.|...-.+
T Consensus       465 ----~~ii~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~  537 (968)
T KOG1060|consen  465 ----LEILFQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID  537 (968)
T ss_pred             ----HHHHHHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh
Confidence                24666667777542 34455554444444432   33444456666677778888888986666666555544443


Q ss_pred             HHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638          280 LVIDGATSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       280 ~L~Py~~~~I~~LE~~RfDKvKpVRD~  306 (898)
                      .   ...=+.-+++--+||-.=-+||-
T Consensus       538 ~---~kll~~Yv~~L~~yD~sYDiRDR  561 (968)
T KOG1060|consen  538 Q---TKLLVQYVFELARYDLSYDIRDR  561 (968)
T ss_pred             h---HHHHHHHHHHHhccCCCcchhHH
Confidence            2   22223345667777765556663

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.56  Score=55.12  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD  133 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD  133 (898)
                      +..++-.+.....+++...|..|++.||+.++++++.+..|-++++-.|+++|-|+.
T Consensus       256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~  312 (533)
T KOG2032|consen  256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL  312 (533)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence            667777777777788889999999999999999999999999999999999999986

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.53  E-value=1.9  Score=52.70  Aligned_cols=219  Identities=13%  Similarity=0.155  Sum_probs=131.4

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~--I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~  154 (898)
                      |..++.++.---..+..  =.-.+..+....+..++.  -...+.+++-+|+++..-++-.||--||..|+.++..... 
T Consensus        42 flr~vn~il~vkKresi--~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-  118 (892)
T KOG2025|consen   42 FLRVVNYILLVKKRESI--PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-  118 (892)
T ss_pred             HHHHHHHheeeccCCCc--HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-
Confidence            55556655433222211  122444455555554433  3457889999999999999999999999999988884421 


Q ss_pred             cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CCchhhHHHHHHHHHH-
Q 002638          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQNFMAKASLLPVVGS-  232 (898)
Q Consensus       155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk-s~~~kaK~alL~aIgS-  232 (898)
                         -.+..+..+...|...|-+..|.|..-|..||.++-++..+..-+..    .-+..+++ +|+..+|-++|.+|.- 
T Consensus       119 ---idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~----n~l~~liqnDpS~EVRRaaLsnI~vd  191 (892)
T KOG2025|consen  119 ---IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV----NLLKDLIQNDPSDEVRRAALSNISVD  191 (892)
T ss_pred             ---cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH----HHHHHHHhcCCcHHHHHHHHHhhccC
Confidence               12366888888888888888999999999999999876544333333    33344444 4788888887776542 


Q ss_pred             ------HH----hcc-ccCc--------------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHH
Q 002638          233 ------LS----QVG-AIAP--------------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATS  287 (898)
Q Consensus       233 ------LA----~vG-a~~~--------------pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~  287 (898)
                            +.    .|. +.-.              -.++..+.-|...|.|.+..+|+++.++|.+      +.+.-.-..
T Consensus       192 nsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgn  265 (892)
T KOG2025|consen  192 NSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS------GWLRFSDGN  265 (892)
T ss_pred             cccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHhhhcccc
Confidence                  11    010 0000              0111222223344666677777777776642      333333467


Q ss_pred             HHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638          288 TLTVLEACRFDKIKPVRDSMNEALQLW  314 (898)
Q Consensus       288 ~I~~LE~~RfDKvKpVRD~A~eALelW  314 (898)
                      +++.|+..---.-.   +++..||+++
T Consensus       266 i~ElL~~ldvsnss---~vavk~leal  289 (892)
T KOG2025|consen  266 ILELLERLDVSNSS---EVAVKALEAL  289 (892)
T ss_pred             HHHHHHHhccccch---HHHHHHHHHH
Confidence            77777754444444   3444455543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.48  E-value=5.8  Score=45.46  Aligned_cols=188  Identities=16%  Similarity=0.129  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638           95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM  174 (898)
Q Consensus        95 vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL  174 (898)
                      +=.+.+.++..+..-+++.+..+...=++.++..+-+....||..| .+++..+...+.+                    
T Consensus       150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a-~~l~~~~~~~l~~--------------------  208 (372)
T PF12231_consen  150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKA-ISLLLEAKKCLGP--------------------  208 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHhCh--------------------
Confidence            4456777777888888888888888888888888888888888874 3344444433221                    


Q ss_pred             hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHH
Q 002638          175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIH  252 (898)
Q Consensus       175 ~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~  252 (898)
                         ++.+..    .+..+.+..-.. ..|.+.++++|.+++.+ .+++.=..+=.++-.+.+.. -..-.|+...+....
T Consensus       209 ---~~~~s~----~~~~~~~~~~~~-~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e  280 (372)
T PF12231_consen  209 ---NKELSK----SVLEDLQRSLEN-GKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE  280 (372)
T ss_pred             ---hHHHHH----HHHHHhcccccc-ccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence               222211    111111111111 15788899999999998 45542222222222222111 123678999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh-----hHHHHHHHHHhhhcCCCh-hhHHHHHHHH
Q 002638          253 ECLGSTDWATRKAAADALSALALHSS--NLVID-----GATSTLTVLEACRFDKIK-PVRDSMNEAL  311 (898)
Q Consensus       253 e~LsddDW~vRKaA~EaL~sLA~avg--e~L~P-----y~~~~I~~LE~~RfDKvK-pVRD~A~eAL  311 (898)
                      .|+.+.|..+|.+|..+--.+..+..  +.-.+     ...+++..++....++.+ .+|+.++..+
T Consensus       281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l  347 (372)
T PF12231_consen  281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL  347 (372)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence            99999999999999999888777665  22212     224444444555555555 6777654433

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=95.44  E-value=0.13  Score=49.25  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhhcCCCC----hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPK----PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k----~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l  151 (898)
                      +-.++..+.+.+.+.+    ...|+.++++++.+.+.++..+..++|+|+.++...|..++  +|..|..+-..|...+
T Consensus         9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L   85 (107)
T smart00802        9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTL   85 (107)
T ss_pred             HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhC
Confidence            4455666665554433    34699999999999999999999999999999999998665  9999999999999999

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=95.40  E-value=0.15  Score=48.46  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhhcCC----CChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSND----PKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus        77 Lp~fLs~L~es~~s----~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l  151 (898)
                      +-.++.++-+.+.+    .....|+.++..++.+.+.++..+.+++|+|+.++...|..+  .+|..|+.+-..+...+
T Consensus         9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L   85 (107)
T PF08064_consen    9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTL   85 (107)
T ss_pred             HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHC
Confidence            44555666555433    456689999999999999999999999999999999999887  79999999999999999

; GO: 0004674 protein serine/threonine kinase activity

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.39  E-value=2.8  Score=51.51  Aligned_cols=244  Identities=12%  Similarity=0.129  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhc-CC---CCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 002638           39 VEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQT-LS---QES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH  110 (898)
Q Consensus        39 ~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~-L~---pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~  110 (898)
                      +.|.++|+.-|+.+ ...-.-..-.+++..++.- +.   ++.   +...+.-|.....+.++..|--++++++-|+..|
T Consensus       251 PRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH  330 (877)
T KOG1059|consen  251 PRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH  330 (877)
T ss_pred             chhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence            56777777777777 3333334455667766653 11   223   4444555556667888899999999999999999


Q ss_pred             chhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHH
Q 002638          111 SELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMA  190 (898)
Q Consensus       111 gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALA  190 (898)
                      +..+..|.    ..|+++|.|.|..||--+.+.+--++..          +.+.++++-|+..+.......  ---.-|.
T Consensus       331 p~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVsk----------kNl~eIVk~LM~~~~~ae~t~--yrdell~  394 (877)
T KOG1059|consen  331 PKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVSK----------KNLMEIVKTLMKHVEKAEGTN--YRDELLT  394 (877)
T ss_pred             HHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHhccchh--HHHHHHH
Confidence            99998886    4578899999999999888865444332          336778888888773222100  0001122


Q ss_pred             HHHHhc---CCCCchhHHHHHHHHHHHhcCCchh----hHHHHHHHHHHHHhccccCcccHHHHHHHHHH-hhCCCCHHH
Q 002638          191 KMVECA---SDPPVVAFQKLCARICKLLSNQNFM----AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE-CLGSTDWAT  262 (898)
Q Consensus       191 kiIE~a---~d~~~~yL~~LlPRLlkLLks~~~k----aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e-~LsddDW~v  262 (898)
                      ++|+-+   ......-++-.+--|..+.+=++.+    +-..+++.-   +.| ....++.-..|..|+. .+...+-+.
T Consensus       395 ~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~---iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~  470 (877)
T KOG1059|consen  395 RIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA---IRV-PSIRPFSVSQMSALLDDPLLAGSAQI  470 (877)
T ss_pred             HHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh---eec-hhhhHhHHHHHHHHHhchhhccchhh
Confidence            333322   1111100111111112222211111    111111110   111 1222222233333322 233335677


Q ss_pred             HHHHHHHHHHHHHhcchHHH--hhHHHHHHHHHhhhcCCChh
Q 002638          263 RKAAADALSALALHSSNLVI--DGATSTLTVLEACRFDKIKP  302 (898)
Q Consensus       263 RKaA~EaL~sLA~avge~L~--Py~~~~I~~LE~~RfDKvKp  302 (898)
                      +..-|+.|.+.|=.+|++-.  ..-..++++|..-++|..++
T Consensus       471 n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~  512 (877)
T KOG1059|consen  471 NSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPG  512 (877)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCch
Confidence            77789999998888886432  23467788888888776654

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.36  E-value=0.62  Score=55.66  Aligned_cols=136  Identities=7%  Similarity=0.088  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhc-------hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELT-------STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS  148 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I-------~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA  148 (898)
                      +..++..+........+..|..|++++|.++..+. +.-       ..+++++...+-....+.+...+..+..+||.+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            44444444433334467899999999999999544 321       3456666666666666677778888888888654


Q ss_pred             HHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHH
Q 002638          149 KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASL  226 (898)
Q Consensus       149 ~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~--~~kaK~al  226 (898)
                      ..-           ...++.|++..-......++.+|+.||.++.+..+..       +-+.|++++.+.  +..+|.++
T Consensus       475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA  536 (574)
T smart00638      475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEVRMAA  536 (574)
T ss_pred             Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHHHHHH
Confidence            433           1223444443112346678899999999988755443       566677777765  55667655


Q ss_pred             HHHH
Q 002638          227 LPVV  230 (898)
Q Consensus       227 L~aI  230 (898)
                      +.++
T Consensus       537 ~~~l  540 (574)
T smart00638      537 VLVL  540 (574)
T ss_pred             HHHH
Confidence            4443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.31  E-value=0.26  Score=51.30  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH-----------HHHHHH-hcCCHhHHHHHHHHHHHHHHhcC-----
Q 002638          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK-----------PLFEAM-MEQNKGVQSGAAMCMAKMVECAS-----  197 (898)
Q Consensus       135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~-----------pL~eaL-~eqnk~VQegAasALAkiIE~a~-----  197 (898)
                      .||.++..++..++..+-+..+   -.+|+.|+|           .|+..+ .|+++.|..+|+.+|+.++|+..     
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l---~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~   77 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSL---FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ   77 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCcee---HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence            3899999999999998622111   134555553           445555 68999999999999999999861     


Q ss_pred             ----C----CCchh-------HHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcc---ccCcccHHHHHHHHHHhhCCC
Q 002638          198 ----D----PPVVA-------FQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECLGST  258 (898)
Q Consensus       198 ----d----~~~~y-------L~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vG---a~~~pyld~lLp~L~e~Lsdd  258 (898)
                          .    -..++       +-.+=-.|+.+|.+. +...-..++.|+..++.+-   ..-..++..++..+..++.+.
T Consensus        78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~  157 (182)
T PF13251_consen   78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR  157 (182)
T ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence                1    11111       233345556666654 4556668899999988643   233677888888888999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcc
Q 002638          259 DWATRKAAADALSALALHSS  278 (898)
Q Consensus       259 DW~vRKaA~EaL~sLA~avg  278 (898)
                      |..+|-++.-+++.+....+
T Consensus       158 d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  158 DPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             CCcHHHHHHHHHHHHHcCCC
Confidence            99999999999999887654

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=95.30  E-value=2  Score=48.18  Aligned_cols=190  Identities=13%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHHHHHHHhchhc
Q 002638           36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLALVCELHSELT  114 (898)
Q Consensus        36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKe-AIlLLG~IAEg~gd~I  114 (898)
                      ..+.-+|+.++..+...-++      +..++.+..++    +++++..++.--.+..|..|.. .+.+++++++..++.+
T Consensus        38 ~~lr~iKkeIL~Li~t~i~~------~~~~~~v~~~~----i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~  107 (319)
T PF08767_consen   38 RLLRTIKKEILKLIETFISK------AEDPEEVANNF----IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI  107 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-------S-HHHHHHHT----HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhc------cCCHHHHHHHH----HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh
Confidence            34555666666666554111      11233333322    6677775543333345667766 7778888999999988


Q ss_pred             hhhHHHHHHHHHHh----hcC---CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638          115 STHVTKIISHIVKR----LKD---SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM  187 (898)
Q Consensus       115 ~PhLpkIL~~Ilrr----LkD---pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas  187 (898)
                      .++++.|+..+...    +.+   .-|..|..--.-|..+..+++.--..-..+.+..++..+.-++...++.+.+.++.
T Consensus       108 ~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~  187 (319)
T PF08767_consen  108 QPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLN  187 (319)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            99998888877665    332   12899999999999999887542111123556777777777778899999999999


Q ss_pred             HHHHHHHhcCCCCc--------hhHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHh
Q 002638          188 CMAKMVECASDPPV--------VAFQKLCARICKLLSNQ----NFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       188 ALAkiIE~a~d~~~--------~yL~~LlPRLlkLLks~----~~kaK~alL~aIgSLA~  235 (898)
                      +|..+++.......        .|+-.++..++.++-+.    .|+....+|..+-.++.
T Consensus       188 ~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve  247 (319)
T PF08767_consen  188 ILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE  247 (319)
T ss_dssp             HHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence            99999998633111        23445666666666554    23344444444444443

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=5.2  Score=49.91  Aligned_cols=243  Identities=15%  Similarity=0.195  Sum_probs=138.4

Q ss_pred             CChhHHHHHHHHHHHHHhc--------CCCCCHHHH----HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQT--------LSQESLPML----LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK  120 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~--------L~pe~Lp~f----Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpk  120 (898)
                      ..+-.+..|+-.+|++..-        +.++.+++|    |.-|..+.+-+....-+.-++++-.+.....+.+.||.+.
T Consensus       510 ~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~  589 (960)
T KOG1992|consen  510 ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPE  589 (960)
T ss_pred             cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhH
Confidence            3566888999999988642        234455554    3344433333333333444455555555555556555555


Q ss_pred             HHHHHHH----hhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHH
Q 002638          121 IISHIVK----RLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       121 IL~~Ilr----rLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE  194 (898)
                      ++..+.+    .-+.| +|..-+-.-+++|.+.....+.+.... ..|..-|-|+|+.+. +.-...---++.-|+-++|
T Consensus       590 ~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve  668 (960)
T KOG1992|consen  590 LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVE  668 (960)
T ss_pred             HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333    34454 456677777889999888854322111 234444455556553 3222333357777888898


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhH---HHHHHHHHHHHhcc-ccCc--ccHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002638          195 CASDPPVVAFQKLCARICKLLSNQNFMAK---ASLLPVVGSLSQVG-AIAP--QSLEPLLQSIHECLGSTDWATRKAAAD  268 (898)
Q Consensus       195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK---~alL~aIgSLA~vG-a~~~--pyld~lLp~L~e~LsddDW~vRKaA~E  268 (898)
                      .....+.+.+-.|+|   .+|.-.--+.+   ++++.++.+++..| ..+.  ..+..++..+.....+...+  -...+
T Consensus       669 ~~~~~ip~~~~~l~~---~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~  743 (960)
T KOG1992|consen  669 HSSGTIPDSYSPLFP---PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFY  743 (960)
T ss_pred             hcCCCCchhHHHHHH---HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHH
Confidence            764422222222222   22222222222   37788888888877 4444  55667777666666653222  23567


Q ss_pred             HHHHHHHhcc-hHHHhhHHHHHH-HHHhhhcCCCh
Q 002638          269 ALSALALHSS-NLVIDGATSTLT-VLEACRFDKIK  301 (898)
Q Consensus       269 aL~sLA~avg-e~L~Py~~~~I~-~LE~~RfDKvK  301 (898)
                      .|..|....+ ..+.||+..+.. +++..+.-|.+
T Consensus       744 LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~  778 (960)
T KOG1992|consen  744 LLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE  778 (960)
T ss_pred             HHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence            7888888888 678999999976 44566666665

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.10  E-value=0.25  Score=55.00  Aligned_cols=130  Identities=19%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             HHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh-hH-----HHHHHHHHHHHh
Q 002638          163 VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM-AK-----ASLLPVVGSLSQ  235 (898)
Q Consensus       163 ~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k-aK-----~alL~aIgSLA~  235 (898)
                      +..++..++.+| .|.+.....+|..||.       +  .+-|+.|+|.++..++.+..+ .+     ..++..+.|+..
T Consensus       195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr-------~--dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~  265 (450)
T COG5095         195 LQMYFDKVISALLDESDEQTRDAALESLR-------N--DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK  265 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence            444555555555 3445555555655542       2  245888999999888765322 11     123344444443


Q ss_pred             ccccC-cccHHHHHHHHHHhhC-----C--C---CHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002638          236 VGAIA-PQSLEPLLQSIHECLG-----S--T---DWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK  301 (898)
Q Consensus       236 vGa~~-~pyld~lLp~L~e~Ls-----d--d---DW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvK  301 (898)
                      ---+| .||+.++||+++.||-     +  +   -.++|+-|++.|..+....+......++++.+-+...-+|..|
T Consensus       266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k  342 (450)
T COG5095         266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK  342 (450)
T ss_pred             CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc
Confidence            22344 8999999999998852     2  2   2669999999999999998866555555555544433344333

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.08  E-value=0.61  Score=60.59  Aligned_cols=168  Identities=14%  Similarity=0.176  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002638          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL  214 (898)
Q Consensus       135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkL  214 (898)
                      .-++.+++.+-.|+..-   .+.   ..+..||+-++..|+++...+-.-|.-||..++|.-+...  ..+.+-..+..-
T Consensus       792 ~d~~~a~li~~~la~~r---~f~---~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R  863 (1692)
T KOG1020|consen  792 ADDDDAKLIVFYLAHAR---SFS---QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGR  863 (1692)
T ss_pred             ccchhHHHHHHHHHhhh---HHH---HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHh
Confidence            44677777655555444   221   3478899999999999999999999999999999643321  122333344444


Q ss_pred             hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002638          215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA  294 (898)
Q Consensus       215 Lks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~  294 (898)
                      +.+.+..+|.+++++||.++.   ..+.++..+-..|.+...|+.-.+||.|+..|--|....+++-. ...=|.++|- 
T Consensus       864 ~~DssasVREAaldLvGrfvl---~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlr-  938 (1692)
T KOG1020|consen  864 LNDSSASVREAALDLVGRFVL---SIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLR-  938 (1692)
T ss_pred             hccchhHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHH-
Confidence            556788899999999999974   33445555555666888899999999999999999999985322 2333444443 


Q ss_pred             hhcCCChhhHHHHHHHH-HHHH
Q 002638          295 CRFDKIKPVRDSMNEAL-QLWK  315 (898)
Q Consensus       295 ~RfDKvKpVRD~A~eAL-elWK  315 (898)
                      .-.|.-..|.+.+.+.+ .+|=
T Consensus       939 Rv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  939 RVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HhccchhHHHHHHHHHHHHHhc
Confidence            33343333556666554 5664

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.03  E-value=0.51  Score=56.03  Aligned_cols=130  Identities=21%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hH-----HHHHHHHHHHH
Q 002638          163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AK-----ASLLPVVGSLS  234 (898)
Q Consensus       163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k---aK-----~alL~aIgSLA  234 (898)
                      ...|++-+.+++...++..-..|..+|+.         .+-|+.|+|+|+.++......   .+     ..++..+.||.
T Consensus       205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl  275 (576)
T KOG2549|consen  205 LQLYYKEITEACTGSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL  275 (576)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence            56788888888866666555555555431         145888999999888654111   11     13444455554


Q ss_pred             hcccc-CcccHHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002638          235 QVGAI-APQSLEPLLQSIHECLG----------STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK  301 (898)
Q Consensus       235 ~vGa~-~~pyld~lLp~L~e~Ls----------ddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvK  301 (898)
                      .--.+ +.+|+-.+||+|+.|+-          |+.|.+|..|++.+..|....++.......++++.+...-.|..+
T Consensus       276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~  353 (576)
T KOG2549|consen  276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK  353 (576)
T ss_pred             cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence            32234 48999999999998853          356999999999999999999976666667777777666666544

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=4.1  Score=50.62  Aligned_cols=212  Identities=12%  Similarity=0.130  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHcC-CCh-h--HHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHH
Q 002638           39 VEMKQKILTSLSKL-ADR-D--THQIAIEDLEKTIQT--LSQESLPMLLNCLYESS-----NDPKPAVKKESVRLLALVC  107 (898)
Q Consensus        39 ~eLK~rll~~L~KL-sDr-D--T~k~Aa~eLD~Ia~~--L~pe~Lp~fLs~L~es~-----~s~k~~vRKeAIlLLG~IA  107 (898)
                      .|+|..+..++.+| .|. |  ++=.+++.|..++..  +.++.|-+|++-+....     .-..--.|-..+.+|+.+.
T Consensus       521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI  600 (978)
T KOG1993|consen  521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI  600 (978)
T ss_pred             HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            46677777666666 444 2  666788888888875  45666767766554432     1123446788999999999


Q ss_pred             HHhchhchhhHHHHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC-CHhHH--
Q 002638          108 ELHSELTSTHVTKIISHIVKRL--KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQ--  182 (898)
Q Consensus       108 Eg~gd~I~PhLpkIL~~IlrrL--kDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq-nk~VQ--  182 (898)
                      +.-++.|.||..+|++++-..=  ...++.+|.|...++..|+.-+-...    ...++ |+-|+++.-.+. .|..+  
T Consensus       601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS----~~~~~-fL~pVIel~~D~~sP~hv~L  675 (978)
T KOG1993|consen  601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS----FEFYP-FLYPVIELSTDPSSPEHVYL  675 (978)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC----ccchH-HHHHHHHHhcCCCCCceeeh
Confidence            9999999999999999876554  44578999999999999999983222    13344 666777766443 34333  


Q ss_pred             -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc--cccCcccHHHHHHHHHHhhCC
Q 002638          183 -SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV--GAIAPQSLEPLLQSIHECLGS  257 (898)
Q Consensus       183 -egAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v--Ga~~~pyld~lLp~L~e~Lsd  257 (898)
                       +-+..-...++++.+... +-|-.|+|.|..++..-.... ..++..|.|-+-.  +.....|...+...+-+.+.+
T Consensus       676 ~EDgmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d  751 (978)
T KOG1993|consen  676 LEDGMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD  751 (978)
T ss_pred             hhhHHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence             446666677777764443 334467777777776432222 2566777776532  233456666666666666655

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.92  E-value=1.9  Score=48.26  Aligned_cols=191  Identities=18%  Similarity=0.187  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~  156 (898)
                      +..+++++..   +.+-....+.+.+|+..+......+.   +.++..+.++|+|..+.||.+-...+|.+..   ....
T Consensus        24 ~~~l~~~~~K---E~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~---~~~~   94 (339)
T PF12074_consen   24 VQGLSPLLSK---ESNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALW---ESPN   94 (339)
T ss_pred             HHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh---hccC
Confidence            4444555542   33455666777777766665533333   6779999999999999999999999998887   1111


Q ss_pred             cCCchhHHhhHHHHHHHHh----cCCHhHHH---HHHHHHHHHHHhc-C--------------CCCchhHHHHHHHHHHH
Q 002638          157 ENNGTVVGLFVKPLFEAMM----EQNKGVQS---GAAMCMAKMVECA-S--------------DPPVVAFQKLCARICKL  214 (898)
Q Consensus       157 e~~~~~~~~lL~pL~eaL~----eqnk~VQe---gAasALAkiIE~a-~--------------d~~~~yL~~LlPRLlkL  214 (898)
                      .........|+++|++.+.    .+.+.+|.   .+++++..+.... .              +.-..+  .+=+|+..-
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~--ll~~kvysk  172 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF--LLSEKVYSK  172 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch--hcCHHHHhc
Confidence            1122456667788887773    33445552   2444444311100 0              000011  122343333


Q ss_pred             hcC-CchhhHHHHHHHHHHHHh-ccccC-cccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHH
Q 002638          215 LSN-QNFMAKASLLPVVGSLSQ-VGAIA-PQSLEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLV  281 (898)
Q Consensus       215 Lks-~~~kaK~alL~aIgSLA~-vGa~~-~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~avge~L  281 (898)
                      |.+ ....   -++.++-+++. ..... ......+-..++-++.+.  .|.+|+.|+++|..+....+..+
T Consensus       173 l~~~~d~~---w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l  241 (339)
T PF12074_consen  173 LASEEDLC---WLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL  241 (339)
T ss_pred             cCCHhHHH---HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH
Confidence            221 1111   33444444432 11111 111345555666777777  89999999999999998888653

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=11  Score=47.55  Aligned_cols=267  Identities=14%  Similarity=0.139  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHcC--C--ChhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc
Q 002638           41 MKQKILTSLSKL--A--DRDTHQIAIEDLEKTIQTLS--QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT  114 (898)
Q Consensus        41 LK~rll~~L~KL--s--DrDT~k~Aa~eLD~Ia~~L~--pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I  114 (898)
                      +-.++++.....  +  ..+..+.+.+.+..+..-|.  |-.|+++|+.|.+...+  +..-.+++.-|..+|+.|...+
T Consensus       505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L  582 (982)
T KOG2022|consen  505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESL  582 (982)
T ss_pred             HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhC
Confidence            345555544333  3  67788888888888887663  43589999999988753  3444567888999999999999


Q ss_pred             hhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh---c---CCHh------
Q 002638          115 STHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM---E---QNKG------  180 (898)
Q Consensus       115 ~PhLpkIL~~IlrrLkDp--Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~---e---qnk~------  180 (898)
                      .||...+++++...|.-.  .+.+|-....+||-+.+.+ +  .+....+.-.++.|++..|.   .   +++.      
T Consensus       583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~--pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~  659 (982)
T KOG2022|consen  583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-K--PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIA  659 (982)
T ss_pred             chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-c--HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            999999999988887553  3577888888999888888 3  23333555666667766662   1   1222      


Q ss_pred             HHHHHHHHHHHHHHhcC-----C------------CCchhHHHHHHHHHHHhcCCchhhH-HHHHHHHHHHHh-----cc
Q 002638          181 VQSGAAMCMAKMVECAS-----D------------PPVVAFQKLCARICKLLSNQNFMAK-ASLLPVVGSLSQ-----VG  237 (898)
Q Consensus       181 VQegAasALAkiIE~a~-----d------------~~~~yL~~LlPRLlkLLks~~~kaK-~alL~aIgSLA~-----vG  237 (898)
                      .|..+.++|..-.....     +            .+..++.+++|-+-+++.-  + .+ ...++++..+..     ++
T Consensus       660 ~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~--~-~~~s~vve~~C~i~~~~v~~~~  736 (982)
T KOG2022|consen  660 FQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM--W-LGLSDVVEASCIIMVKGVRSLL  736 (982)
T ss_pred             HHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHH--H-hcchhHHHHHHHHHHhcccccc
Confidence            33445555554432210     0            1112355666666666651  1 11 123333333322     22


Q ss_pred             ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh----------cchHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638          238 AIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALH----------SSNLVIDGATSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       238 a~~-~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a----------vge~L~Py~~~~I~~LE~~RfDKvKpVRD~  306 (898)
                      ..| .|++..+++.+..++...--.    +++...+++.+          ++..|.......+.+++.--|-.+.   |.
T Consensus       737 ~sF~~p~l~~l~~Fi~r~~~~~~a~----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~---Di  809 (982)
T KOG2022|consen  737 TSFPEPMLPSLCPFIVRFLTSCLAV----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQP---DI  809 (982)
T ss_pred             ccchhhhHHHHHHHHHHhccchHHH----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCc---hH
Confidence            335 667777777777765553211    12222221111          1123334455666677755555554   44


Q ss_pred             HHHHH----HHHHHhhcCCC
Q 002638          307 MNEAL----QLWKKIAGKVD  322 (898)
Q Consensus       307 A~eAL----elWK~La~~~d  322 (898)
                      +.+-+    +.||.+|+.-+
T Consensus       810 ~~~~~~~v~~ilkk~P~~~~  829 (982)
T KOG2022|consen  810 YLQLIGFVRQILKKIPKFLE  829 (982)
T ss_pred             HHHHHHHHHHHHHhCcCccc
Confidence            44444    45666665543

>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans

Probab=94.77  E-value=0.68  Score=50.27  Aligned_cols=169  Identities=14%  Similarity=0.211  Sum_probs=121.0

Q ss_pred             hhhHHHHHHHHHHHHHHhc-------hh-chhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhH
Q 002638           93 PAVKKESVRLLALVCELHS-------EL-TSTHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVV  163 (898)
Q Consensus        93 ~~vRKeAIlLLG~IAEg~g-------d~-I~PhLpkIL~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~  163 (898)
                      |..=|++-.+|+.+++...       .. -..++.+|-.+++..|..- ...+=.++..++..+++.+...........-
T Consensus        61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP  140 (255)
T PF10350_consen   61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP  140 (255)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence            6677899999999997652       12 3567888888777776553 4567778888999999999743221122334


Q ss_pred             HhhHHHHHHHHhcCCH------hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch--------hhHHHHHHH
Q 002638          164 GLFVKPLFEAMMEQNK------GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF--------MAKASLLPV  229 (898)
Q Consensus       164 ~~lL~pL~eaL~eqnk------~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~--------kaK~alL~a  229 (898)
                      ...|..+++.+..++.      +=-+|--.++.+++-..+....+.|+..+.+|+.+.+.+..        -.+.+++++
T Consensus       141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi  220 (255)
T PF10350_consen  141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI  220 (255)
T ss_pred             HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence            5567777777754411      12256777788888765443337899999999999988754        367789999


Q ss_pred             HHHHHh---ccccCcccHHHHHHHHHHhhCCCCHH
Q 002638          230 VGSLSQ---VGAIAPQSLEPLLQSIHECLGSTDWA  261 (898)
Q Consensus       230 IgSLA~---vGa~~~pyld~lLp~L~e~LsddDW~  261 (898)
                      +.+|+.   .+....+|+...+..-++.+.+++|.
T Consensus       221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa  255 (255)
T PF10350_consen  221 LRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA  255 (255)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence            999974   23567889999998888999999984

Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.76  E-value=8.2  Score=46.78  Aligned_cols=98  Identities=19%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             HHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHH
Q 002638           48 SLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV  126 (898)
Q Consensus        48 ~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Il  126 (898)
                      +|.-. ++..+.+.|++-|-++...+|. .-..-+.++++-..+.+..+|+.||+.|-.+|...    ..|+++|.-++.
T Consensus        28 il~~~kg~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~  102 (556)
T PF05918_consen   28 ILDGVKGSPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLV  102 (556)
T ss_dssp             HHHGGGS-HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHH
Confidence            44333 6777999999999999998853 54555666666666888999999999998888753    457889999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHHH
Q 002638          127 KRLKDSDSGMKEACRDSIGSLSKL  150 (898)
Q Consensus       127 rrLkDpDs~VR~Ac~~tLG~LA~~  150 (898)
                      +.|.--++..+.++-++|..|...
T Consensus       103 QlL~tdd~~E~~~v~~sL~~ll~~  126 (556)
T PF05918_consen  103 QLLQTDDPVELDAVKNSLMSLLKQ  126 (556)
T ss_dssp             HHTT---HHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhc
Confidence            999988888888888877544433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=6.2  Score=44.91  Aligned_cols=114  Identities=16%  Similarity=0.194  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHHc--C------CChhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002638           37 AMVEMKQKILTSLSK--L------ADRDTHQIAIEDLEKTIQTLSQ-ESLPMLLNCLYESSNDPKPAVKKESVRLLALVC  107 (898)
Q Consensus        37 ~~~eLK~rll~~L~K--L------sDrDT~k~Aa~eLD~Ia~~L~p-e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA  107 (898)
                      -+|+|.++....=..  +      .-|++...-+..|+++.+...+ ...++|++-|+--.-.++..++--++.-+|.+.
T Consensus        31 dlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcil  110 (524)
T KOG4413|consen   31 DLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL  110 (524)
T ss_pred             ccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH
Confidence            347777766543222  1      2355666778899999987644 458999999998887888889999999999999


Q ss_pred             HHhchh-chhhH----HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002638          108 ELHSEL-TSTHV----TKIISHIVKRLKDSDSGMKEACRDSIGSLSKL  150 (898)
Q Consensus       108 Eg~gd~-I~PhL----pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~  150 (898)
                      |-|... +...+    ..|++.|+..+...|-.|-.|+.++|.+++..
T Consensus       111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf  158 (524)
T KOG4413|consen  111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence            998843 44433    47888999999999999999999999998854

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=1.6  Score=52.08  Aligned_cols=170  Identities=12%  Similarity=0.084  Sum_probs=102.5

Q ss_pred             hhHhHHHHHHHHHHHHHcC----CChh-----------HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHH
Q 002638           34 SHLAMVEMKQKILTSLSKL----ADRD-----------THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKK   97 (898)
Q Consensus        34 ~~~~~~eLK~rll~~L~KL----sDrD-----------T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRK   97 (898)
                      +........+|++.+|-.-    +|++           .|--..+.|.-++--++.+. +.....-+.+  ++..|..=+
T Consensus       330 ~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~E  407 (559)
T KOG2081|consen  330 ALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVE  407 (559)
T ss_pred             HHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHH
Confidence            3445566777888877332    2222           33334444444444455433 4444444443  466799999


Q ss_pred             HHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH--h
Q 002638           98 ESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--M  175 (898)
Q Consensus        98 eAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL--~  175 (898)
                      +++..|.+++.-....-.+-+|+|+..|.+.  +-...||.+++-.+|.|..|+-         .+++++.|+.+.+  +
T Consensus       408 AaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~---------~~p~~le~v~~~~~~~  476 (559)
T KOG2081|consen  408 AALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVE---------QHPELLEPVLRYIRQG  476 (559)
T ss_pred             HHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHH---------hCcHHHHHHHHHHHHH
Confidence            9999998888654443344455555444332  1224599999999999999993         3455666666665  2


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhc
Q 002638          176 EQNKGVQSGAAMCMAKMVECASDPP---VVAFQKLCARICKLLS  216 (898)
Q Consensus       176 eqnk~VQegAasALAkiIE~a~d~~---~~yL~~LlPRLlkLLk  216 (898)
                      -+.+..+.+|+.|+..+|..+....   .+++..|+--+...+-
T Consensus       477 ~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~  520 (559)
T KOG2081|consen  477 LQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQI  520 (559)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence            2344489999999999998764332   3444444444443333

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.67  E-value=0.13  Score=49.33  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC---CCc---------
Q 002638          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD---PPV---------  201 (898)
Q Consensus       134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d---~~~---------  201 (898)
                      +.||...+.+++.++.+..   +    +.|+.+++.+++.+.. ++.........|..+.|+..+   ...         
T Consensus         2 ~~i~~kl~~~l~~i~~~~~---P----~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~   73 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDW---P----QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELK   73 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---T----TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHC---h----hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence            4688888999999988883   1    4599999999999876 577777889999999988632   111         


Q ss_pred             ----hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638          202 ----VAFQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (898)
Q Consensus       202 ----~yL~~LlPRLlkLLks~~----~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL  270 (898)
                          ..++.++.-+.++|....    ......+|.|+++.+.-.  ..+..  ..+++.++++|.+++  +|.+|+|||
T Consensus        74 ~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl  148 (148)
T PF08389_consen   74 DALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence                113444555555555432    455668889999986522  11111  137888888886655  489999987

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=0.77  Score=57.91  Aligned_cols=142  Identities=13%  Similarity=0.128  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Q 002638          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDP-PVVAFQKLCARIC  212 (898)
Q Consensus       135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~-~~~yL~~LlPRLl  212 (898)
                      .-|..|+.+|+.|+..+ +-+.  ..-.-..++-..++.|.+ +.+-...=.|.||.++-|+-... ....=..--.+|+
T Consensus       572 EqrtmaAFVLAviv~nf-~lGQ--~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~  648 (1387)
T KOG1517|consen  572 EQRTMAAFVLAVIVRNF-KLGQ--KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI  648 (1387)
T ss_pred             HHHHHHHHHHHHHHccc-chhH--HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence            55666666666666664 2110  001122344445555544 34555566888888888864221 1122223567889


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcc-ccCc----------------ccHHHHHH----HHHHhhCCCCHHHHHHHHHHHH
Q 002638          213 KLLSNQNFMAKASLLPVVGSLSQVG-AIAP----------------QSLEPLLQ----SIHECLGSTDWATRKAAADALS  271 (898)
Q Consensus       213 kLLks~~~kaK~alL~aIgSLA~vG-a~~~----------------pyld~lLp----~L~e~LsddDW~vRKaA~EaL~  271 (898)
                      .+|.++...+|++++-++|+++..+ ..|.                .-++.+++    .|...+++...-+|+.++.+|.
T Consensus       649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls  728 (1387)
T KOG1517|consen  649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS  728 (1387)
T ss_pred             HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence            9999999999999999999998643 1111                12333333    5666677778888888888777


Q ss_pred             HHHHhcch
Q 002638          272 ALALHSSN  279 (898)
Q Consensus       272 sLA~avge  279 (898)
                      .++...-.
T Consensus       729 ~~~~g~~~  736 (1387)
T KOG1517|consen  729 HFVVGYVS  736 (1387)
T ss_pred             HHHHhhHH
Confidence            66554443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.43  E-value=1.3  Score=52.12  Aligned_cols=271  Identities=16%  Similarity=0.139  Sum_probs=163.7

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002638           29 SSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-----LPMLLNCLYESSNDPKPAVKKESVRLL  103 (898)
Q Consensus        29 ~~~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-----Lp~fLs~L~es~~s~k~~vRKeAIlLL  103 (898)
                      +-+.+..-...++-.-++.+|..=....+-.+.+++|..++++-+=++     +--|..+|...+.+.++.+|-.++.++
T Consensus        95 pf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~  174 (728)
T KOG4535|consen   95 PFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLL  174 (728)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Confidence            445555566778888888888766666788888999999998654333     334456666667888999999999999


Q ss_pred             HHHHHHhchh--c--------------hhhHHHHHHHHHHhhcCCC----------------------------------
Q 002638          104 ALVCELHSEL--T--------------STHVTKIISHIVKRLKDSD----------------------------------  133 (898)
Q Consensus       104 G~IAEg~gd~--I--------------~PhLpkIL~~IlrrLkDpD----------------------------------  133 (898)
                      |+++..|.-.  +              .||+..  +---+.|.|.+                                  
T Consensus       175 ~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~--~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s  252 (728)
T KOG4535|consen  175 GAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSP--PDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDS  252 (728)
T ss_pred             HHHHhcCCCCHHHHHHhcCCCccccccCCCCCC--hHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccc
Confidence            9998876421  0              011100  01112222221                                  


Q ss_pred             ----------------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638          134 ----------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (898)
Q Consensus       134 ----------------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~  197 (898)
                                      +.||--|..++..+++++   +.  -..++..+...+...+.+..+.+|..++.||.++.....
T Consensus       253 ~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~--~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv  327 (728)
T KOG4535|consen  253 CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SM--TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI  327 (728)
T ss_pred             cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence                            568888999999999988   21  123455666677777788999999999999999987752


Q ss_pred             --CCCc---hhHHHHHHHHHHHh--------cCCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHHHHHHhhCCCCHHH
Q 002638          198 --DPPV---VAFQKLCARICKLL--------SNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQSIHECLGSTDWAT  262 (898)
Q Consensus       198 --d~~~---~yL~~LlPRLlkLL--------ks~~~kaK~alL~aIgSLA~vG-a~~~pyld-~lLp~L~e~LsddDW~v  262 (898)
                        +.+.   .-+..=+-+++.+.        ++.++-.+.++-+++.++.... ..++.--. ..+..+..|-.+++.-+
T Consensus       328 ~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv  407 (728)
T KOG4535|consen  328 QQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLV  407 (728)
T ss_pred             hhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHH
Confidence              2111   11222223333332        2223333443333333332111 12222122 23445566666666678


Q ss_pred             HHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638          263 RKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       263 RKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~  306 (898)
                      |.+|..+++.+..+-+ -.-.-|...|-+.+....+||.--+|+-
T Consensus       408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~K  452 (728)
T KOG4535|consen  408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAK  452 (728)
T ss_pred             HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHH
Confidence            8888888777666666 4444566777777777777765545543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.69  Score=51.76  Aligned_cols=150  Identities=13%  Similarity=0.160  Sum_probs=101.3

Q ss_pred             HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCccc
Q 002638          164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS  243 (898)
Q Consensus       164 ~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~py  243 (898)
                      ..++..+...|....-.|-.+||+|++.+.+...+.+..-++.++-.|+.=-...+--++..+..++.+++..  ..   
T Consensus       128 ~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~--vt---  202 (334)
T KOG2933|consen  128 HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH--VT---  202 (334)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--cC---
Confidence            3344444444444444577889999999999765543333333332222211222333567777777777531  11   


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638          244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       244 ld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La  318 (898)
                      -..+++.|+.++.+....+|..+|-|+......+|  ....+|....+..+...-.|+...+|+++.-++.-.+.+-
T Consensus       203 p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~  279 (334)
T KOG2933|consen  203 PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL  279 (334)
T ss_pred             hHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence            12678888888999999999999999988777776  6777888899999999999999989988776666655544

>PF05536 Neurochondrin: Neurochondrin

Probab=94.40  E-value=7.8  Score=46.82  Aligned_cols=194  Identities=12%  Similarity=0.096  Sum_probs=129.1

Q ss_pred             HHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHHhchh-c--hhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002638           79 MLLNCLYESSNDPK-PAVKKESVRLLALVCELHSEL-T--STHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN  153 (898)
Q Consensus        79 ~fLs~L~es~~s~k-~~vRKeAIlLLG~IAEg~gd~-I--~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik  153 (898)
                      .||.-|+.+...+. .......-+++..++..|.+. +  .|.+-.-+|.++..+...+. .+-.=|..+|..++   ..
T Consensus        53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s~  129 (543)
T PF05536_consen   53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---SS  129 (543)
T ss_pred             hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---cC
Confidence            46666665543322 233444455555666666533 3  57788889999999988776 55555555555555   22


Q ss_pred             ccccCCchhH--HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-C---CchhHHHHHHHHHHHhcCCchhhHHHHH
Q 002638          154 GKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P---PVVAFQKLCARICKLLSNQNFMAKASLL  227 (898)
Q Consensus       154 ~~~e~~~~~~--~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d-~---~~~yL~~LlPRLlkLLks~~~kaK~alL  227 (898)
                      +.   +...+  ...++.|++.+.. .+..++-|...|..++-.... .   ....+..+++++...+...+-..|-.++
T Consensus       130 ~~---G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell  205 (543)
T PF05536_consen  130 PE---GAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELL  205 (543)
T ss_pred             cH---hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence            21   11211  2367788888865 555667777777777765432 1   1235778999999999988777788889


Q ss_pred             HHHHHHHh-cc------ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcch
Q 002638          228 PVVGSLSQ-VG------AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSN  279 (898)
Q Consensus       228 ~aIgSLA~-vG------a~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge  279 (898)
                      ..++.+.. ..      ...+.....+...|..+|.+ ....-|..|+...+.|..+.|.
T Consensus       206 ~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~  265 (543)
T PF05536_consen  206 EFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP  265 (543)
T ss_pred             HHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence            99999853 21      22355677777788888877 4577899999999999999994

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.39  E-value=1.7  Score=53.29  Aligned_cols=146  Identities=16%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             chhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       114 I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki  192 (898)
                      ...|-++|+|.|..-++-+++ .++-...+-+-.|.+.+-      .++....+|+-|+.++.+....+|+.+...+..+
T Consensus       343 ~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~------~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv  416 (700)
T KOG2137|consen  343 QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP------PEEVKEKILPLLYRSLEDSDVQIQELALQILPTV  416 (700)
T ss_pred             hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC------hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence            344566777777777765544 333333444444444441      2356778999999999999999999999999999


Q ss_pred             HHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638          193 VECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADA  269 (898)
Q Consensus       193 IE~a~d~~~~yL~~LlPRLlkLL-ks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea  269 (898)
                      .|.++..  -.=+.|+|+|-.+. ++.+..+|..+|.|++.++..-+  ...+-..+.+++.|....|..+--.-..+
T Consensus       417 ~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~~~v~d~~lpi~~~~~~~dp~iv~~~~~i  490 (700)
T KOG2137|consen  417 AESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--KAAVLDELLPILKCIKTRDPAIVMGFLRI  490 (700)
T ss_pred             HHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9876421  23446888887764 44567788899999999884221  11222445556666666665553333333

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.28  E-value=5.1  Score=44.25  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhchhchh--hHHHHHHHHH-HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638           99 SVRLLALVCELHSELTST--HVTKIISHIV-KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (898)
Q Consensus        99 AIlLLG~IAEg~gd~I~P--hLpkIL~~Il-rrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~  175 (898)
                      |+.++..+-+-....+.|  .|..|+..|+ +.++.+++.||..+..++|-++-.-.        +.-..+++.++..+.
T Consensus         3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--------~~a~~~l~l~~~~~~   74 (298)
T PF12719_consen    3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--------ELAKEHLPLFLQALQ   74 (298)
T ss_pred             HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHHH
Confidence            444555555555544544  5668886555 89999999999999999997775541        234556777777775


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCc---------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002638          176 EQNKGVQSGAAMCMAKMVECASDPPV---------VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG  237 (898)
Q Consensus       176 eqnk~VQegAasALAkiIE~a~d~~~---------~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG  237 (898)
                      .....++..|+.|+--++---+....         ..-..++.-+.+.|.+.+..++..+...+.-+.-.|
T Consensus        75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            55888998888887666643221111         123467778888888888888888888888876544

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.16  E-value=1.6  Score=49.14  Aligned_cols=212  Identities=14%  Similarity=0.168  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh
Q 002638           39 VEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL  113 (898)
Q Consensus        39 ~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~  113 (898)
                      ..+=+|+-+||+-. ... .++-|++.-+.|-+.++++.    ++.|++-|+..+......+|...+.++....---+..
T Consensus        53 ~~v~krLaqCL~P~LPsG-VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~  131 (307)
T PF04118_consen   53 LQVSKRLAQCLNPALPSG-VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPA  131 (307)
T ss_pred             HHHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHH
Confidence            34567888999765 434 88999999999988887543    7778888887777777889999999998887766778


Q ss_pred             chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV  193 (898)
Q Consensus       114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI  193 (898)
                      +.|.++-++..++.+|.|..+.+-+-+...+-.+...+   +       -..|...|+.++. .++.+-.+|..-|.+-.
T Consensus       132 L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v---~-------~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l  200 (307)
T PF04118_consen  132 LRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV---G-------DKYFWQCLWLCII-TSPSRRLGALNYLLRRL  200 (307)
T ss_pred             HHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc---C-------hhHHHHHHHHHHh-cCcchhHHHHHHHHHhC
Confidence            89999999999999999999999999999999998887   2       1246677777775 44555555544443333


Q ss_pred             HhcC------------CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-c-----cCcccHHHHHHHHHHhh
Q 002638          194 ECAS------------DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-A-----IAPQSLEPLLQSIHECL  255 (898)
Q Consensus       194 E~a~------------d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a-----~~~pyld~lLp~L~e~L  255 (898)
                      -...            ....+--.-|+.-|+..|.+.+.-++-..|+.+-+-.... .     ........++......+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~  280 (307)
T PF04118_consen  201 PKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLVMAALKVV  280 (307)
T ss_pred             CcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHH
Confidence            2111            0001113347788888889888888888899887766443 2     22444555555555544


Q ss_pred             CCCCHHH
Q 002638          256 GSTDWAT  262 (898)
Q Consensus       256 sddDW~v  262 (898)
                      --.|+.+
T Consensus       281 lrrDmSL  287 (307)
T PF04118_consen  281 LRRDMSL  287 (307)
T ss_pred             hHhhhhH
Confidence            4444443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.10  E-value=5.8  Score=47.77  Aligned_cols=156  Identities=11%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHhccc------ccCCchhHHhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638          132 SDSGMKEACRDSIGSLSKLYLNGK------EENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVECASDPPV  201 (898)
Q Consensus       132 pDs~VR~Ac~~tLG~LA~~lik~~------~e~~~~~~~~lL~pL~eaL----~eqnk~VQegAasALAkiIE~a~d~~~  201 (898)
                      ..+.+|.+|.-++|.|+..+....      ..........+++.|...|    ...+......+.-||..+-    .   
T Consensus       447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----~---  519 (618)
T PF01347_consen  447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----H---  519 (618)
T ss_dssp             T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred             CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----C---
Confidence            457899999999999999986541      1112233444555555554    3445555566666665542    1   


Q ss_pred             hhHHHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHh
Q 002638          202 VAFQKLCARICKLLSNQ---NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS--TDWATRKAAADALSALALH  276 (898)
Q Consensus       202 ~yL~~LlPRLlkLLks~---~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsd--dDW~vRKaA~EaL~sLA~a  276 (898)
                         +..++.|.+++...   ...+|.+++.++..++      ..+-+.+.+.|..++.+  ++.++|.+|..+|..   .
T Consensus       520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~------~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~  587 (618)
T PF01347_consen  520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA------KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMR---C  587 (618)
T ss_dssp             ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG------GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T
T ss_pred             ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHh------hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh---c
Confidence               23566677777665   3334555555554432      22334566666776655  578899998766542   2


Q ss_pred             cchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638          277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL  311 (898)
Q Consensus       277 vge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL  311 (898)
                      -     |-...+-.+......|+...|+.++..+|
T Consensus       588 ~-----P~~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  588 N-----PSPSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             --------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             C-----CCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            2     23333444555667899998988876655

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.04  E-value=1.9  Score=47.47  Aligned_cols=136  Identities=10%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             CchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC---c---hhHHHHHHHHHHHhc--------CCchhhHH
Q 002638          159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---V---VAFQKLCARICKLLS--------NQNFMAKA  224 (898)
Q Consensus       159 ~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~---~---~yL~~LlPRLlkLLk--------s~~~kaK~  224 (898)
                      .+++|+.++|+++..+++..+.+..-+|.||..+++..+...   .   ++.+-+-+-|.++|-        ......=.
T Consensus       113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~  192 (282)
T PF10521_consen  113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ  192 (282)
T ss_pred             HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence            457899999999999999999999999999999999875443   1   233334444555554        33444445


Q ss_pred             HHHHHHHHHHhcc--ccCcccHHHHHHH----HHHhhC-CC---CHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002638          225 SLLPVVGSLSQVG--AIAPQSLEPLLQS----IHECLG-ST---DWATRKAAADALSALALHSSNLVIDGATSTLTVLEA  294 (898)
Q Consensus       225 alL~aIgSLA~vG--a~~~pyld~lLp~----L~e~Ls-dd---DW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~  294 (898)
                      .++.|+-+++.+-  ....++...+-..    ++.-+. ..   ...+|...++.|..+...+|-...-|+.+++.+|.+
T Consensus       193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~  272 (282)
T PF10521_consen  193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ  272 (282)
T ss_pred             HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            7788888886542  2222233333332    333222 12   488999999999999999998777899999988765

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.98  E-value=3.6  Score=52.86  Aligned_cols=90  Identities=19%  Similarity=0.327  Sum_probs=70.6

Q ss_pred             CChhHHHHHHHHHHHHHhc---CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhh
Q 002638           53 ADRDTHQIAIEDLEKTIQT---LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL  129 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~---L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrL  129 (898)
                      +|.+.++.|.-.|-++.--   +-...++.|+..+.   .++.|.+|--++.++|-++=.++..+.|+=    +++.++|
T Consensus       935 sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~fpnlie~~T----~~Ly~rL 1007 (1251)
T KOG0414|consen  935 SDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRFPNLIEPWT----EHLYRRL 1007 (1251)
T ss_pred             CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhcccccchhh----HHHHHHh
Confidence            7888999999999998751   11223555444443   377899999999999999999988887764    4578899


Q ss_pred             cCCChHHHHHHHHHHHHHHH
Q 002638          130 KDSDSGMKEACRDSIGSLSK  149 (898)
Q Consensus       130 kDpDs~VR~Ac~~tLG~LA~  149 (898)
                      +|+++.||..|.-++.-|.-
T Consensus      1008 ~D~~~~vRkta~lvlshLIL 1027 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLIL 1027 (1251)
T ss_pred             cCccHHHHHHHHHHHHHHHH
Confidence            99999999999998876653

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=93.95  E-value=2.3  Score=54.84  Aligned_cols=177  Identities=13%  Similarity=0.099  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Q 002638          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ-SGAAMCMAKMVECASDPPVVAFQKLCARICKLL  215 (898)
Q Consensus       137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQ-egAasALAkiIE~a~d~~~~yL~~LlPRLlkLL  215 (898)
                      |.-|--++-.|+..+...-++.-...|.-++.+|-+....++..+- ...+.+++...+.   ...+ +-.+.|+++.++
T Consensus       750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s---~l~~-~~~~l~~l~~~~  825 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHS---FLHP-LGSLLPRLFFFV  825 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhh---hhhh-hhhhhhHHHHhc
Confidence            6666667777777763211111112233334444333333322211 1233333333322   1222 556889999999


Q ss_pred             cCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHH
Q 002638          216 SNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVL  292 (898)
Q Consensus       216 ks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~L  292 (898)
                      .+.+.-+|-++..||+.++..+  +.....++.++    -.+.+-+.-.|+..++++..+..... -.+.||..=+|..|
T Consensus       826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~----~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pl  901 (1549)
T KOG0392|consen  826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFL----PLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPL  901 (1549)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhh
Confidence            9999999999999999997644  33332333333    34455555677777777777776666 67888988889999


Q ss_pred             HhhhcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638          293 EACRFDKIKPVRDSMNEALQLWKKIAGKV  321 (898)
Q Consensus       293 E~~RfDKvKpVRD~A~eALelWK~La~~~  321 (898)
                      ..+.-|.++.||+++.+++-...-+.+..
T Consensus       902 lr~msd~~d~vR~aat~~fa~lip~~~le  930 (1549)
T KOG0392|consen  902 LRRMSDQIDSVREAATKVFAKLIPLLPLE  930 (1549)
T ss_pred             hcccccchHHHHHHHHHHHHHHhcccccc
Confidence            99999999999999988888766666553

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=93.89  E-value=9.8  Score=47.24  Aligned_cols=216  Identities=16%  Similarity=0.137  Sum_probs=130.3

Q ss_pred             HHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hchhchhhHHHH
Q 002638           44 KILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSELTSTHVTKI  121 (898)
Q Consensus        44 rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg-~gd~I~PhLpkI  121 (898)
                      |.+.+++.- .|.++.++|++-+.+|-.  +|+....+...+....  .+..+|--|+..|.-..+. +++.-.-.+..|
T Consensus         7 qav~a~ndp~vdsa~KqqA~~y~~qiKs--Sp~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlv   82 (980)
T KOG2021|consen    7 QAVNAVNDPRVDSATKQQAIEYLNQIKS--SPNAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLV   82 (980)
T ss_pred             HHHHhhCCCcccHHHHHHHHHHHHhhcC--CccHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            444444444 789999999999999988  6777888888876544  5788999999988777654 444433334444


Q ss_pred             HHHHHH----h-hcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--C--HhHHHHHHHH
Q 002638          122 ISHIVK----R-LKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--N--KGVQSGAAMC  188 (898)
Q Consensus       122 L~~Ilr----r-LkDp----Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--n--k~VQegAasA  188 (898)
                      --.|..    . |.+.    -+-|++.+..+++.|.-..--       ..|+.|+.-|+..+.-.  .  -..---.++|
T Consensus        83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-------~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla  155 (980)
T KOG2021|consen   83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-------DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA  155 (980)
T ss_pred             HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence            333333    2 3333    358999999999988766521       33776666665555211  1  0011112222


Q ss_pred             HHHHHHh-------------------cCCCCchhHHHHHHHHHHHh---cCC-chhhHHHHHHHHHHHHh-ccccCcccH
Q 002638          189 MAKMVEC-------------------ASDPPVVAFQKLCARICKLL---SNQ-NFMAKASLLPVVGSLSQ-VGAIAPQSL  244 (898)
Q Consensus       189 LAkiIE~-------------------a~d~~~~yL~~LlPRLlkLL---ks~-~~kaK~alL~aIgSLA~-vGa~~~pyl  244 (898)
                      +..=+-+                   +++.+   +++|+.--..+|   ++- ++..-+.+|+|+|+++. +. +....=
T Consensus       156 IdsEiad~dv~rT~eei~knnliKDaMR~nd---ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId-InLIaN  231 (980)
T KOG2021|consen  156 IDSEIADQDVIRTKEEILKNNLIKDAMRDND---IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID-INLIAN  231 (980)
T ss_pred             hhhHhhhccccCChHHHHHHhhHHHHHHhhh---HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh-hhhhhc
Confidence            2211111                   12222   333433333333   333 56667789999999964 11 111113


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638          245 EPLLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       245 d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a  276 (898)
                      +.+|+-|.+++..  -.+|.+||+|+-+|..-
T Consensus       232 d~f~nLLy~fl~i--eelR~aac~cilaiVsK  261 (980)
T KOG2021|consen  232 DYFLNLLYKFLNI--EELRIAACNCILAIVSK  261 (980)
T ss_pred             hhHHHHHHHHHhH--HHHHHHHHHHHHHHHhc
Confidence            5677888888874  67999999999887653

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=2.7  Score=47.89  Aligned_cols=175  Identities=14%  Similarity=0.179  Sum_probs=116.5

Q ss_pred             HHHHHHcC-CChhHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh---
Q 002638           45 ILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQ-------ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---  113 (898)
Q Consensus        45 ll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~p-------e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~---  113 (898)
                      ....++.. .|-+.+.-|++.|+-++++++.       ..+.+++.    ..++.++.+|+.|...+|.++.--+..   
T Consensus        86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~  161 (342)
T KOG2160|consen   86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ  161 (342)
T ss_pred             hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            45555655 5888999999999999998852       12444444    455778999999999999999875533   


Q ss_pred             ch--hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh-----HHHHHHHHhc--CCHhHHHH
Q 002638          114 TS--THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-----VKPLFEAMME--QNKGVQSG  184 (898)
Q Consensus       114 I~--PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l-----L~pL~eaL~e--qnk~VQeg  184 (898)
                      +.  -.|.+++..+.   .|.+-.+|..+..+|+.|.++- .++       ...|     ..-|..+|..  .++..|.-
T Consensus       162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~-~~g-------~~~fl~~~G~~~L~~vl~~~~~~~~lkrK  230 (342)
T KOG2160|consen  162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN-KPG-------QDEFLKLNGYQVLRDVLQSNNTSVKLKRK  230 (342)
T ss_pred             HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC-cHH-------HHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence            21  24555555443   4555588899999999988887 322       1222     3567778866  56778888


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Q 002638          185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS  234 (898)
Q Consensus       185 AasALAkiIE~a~d~~~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA  234 (898)
                      |+.-++.+++.........-..+.++....+.. .++.++.+++.++.++.
T Consensus       231 ~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  231 ALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            999999999875221112223345555555443 46667777777777765

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.68  E-value=10  Score=45.50  Aligned_cols=219  Identities=18%  Similarity=0.149  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHH
Q 002638           59 QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE  138 (898)
Q Consensus        59 k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~  138 (898)
                      ...+..|-++++.++.++|..++..+.. ..   +..|+.-+-+|..+..      .+.+.    +|...++..+-.- .
T Consensus       310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT------~~a~~----~i~~~i~~~~~~~-~  374 (574)
T smart00638      310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGT------PPALK----FIKQWIKNKKITP-L  374 (574)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCC------HHHHH----HHHHHHHcCCCCH-H
Confidence            3345566777777777677777776653 21   4455555555433322      12222    2333333332111 1


Q ss_pred             HHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHh-cCCCC-------chhHHH
Q 002638          139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVEC-ASDPP-------VVAFQK  206 (898)
Q Consensus       139 Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e----qnk~VQegAasALAkiIE~-a~d~~-------~~yL~~  206 (898)
                      -+...+..+...+..+        -.+++.-|++.+..    +.+.+..+|..+++.++.. +.+..       ..|++.
T Consensus       375 ea~~~~~~~~~~~~~P--------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~  446 (574)
T smart00638      375 EAAQLLAVLPHTARYP--------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY  446 (574)
T ss_pred             HHHHHHHHHHHhhhcC--------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence            2444555666665333        24577777777743    3566778889999988863 32221       234444


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002638          207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGAT  286 (898)
Q Consensus       207 LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~  286 (898)
                      |...|....+..+...+...|.+||=   +|  .+.-+..+.|.+. .-......+|.+|+.+|..++...++.+.+.+-
T Consensus       447 l~~~l~~~~~~~~~~~~~~~LkaLGN---~g--~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~  520 (574)
T smart00638      447 LHELLQQAVSKGDEEEIQLYLKALGN---AG--HPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL  520 (574)
T ss_pred             HHHHHHHHHhcCCchheeeHHHhhhc---cC--ChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            44444444444444434444555443   22  1222223333332 112345789999999999999888876665433


Q ss_pred             HHHHHHHhhhcCCChhhHHHHHHHH
Q 002638          287 STLTVLEACRFDKIKPVRDSMNEAL  311 (898)
Q Consensus       287 ~~I~~LE~~RfDKvKpVRD~A~eAL  311 (898)
                      ++   +.  ..+...+||=+|.-+|
T Consensus       521 ~i---~~--n~~e~~EvRiaA~~~l  540 (574)
T smart00638      521 PI---YL--NRAEPPEVRMAAVLVL  540 (574)
T ss_pred             HH---Hc--CCCCChHHHHHHHHHH
Confidence            33   22  1223444776654443

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=93.67  E-value=1.2  Score=50.47  Aligned_cols=77  Identities=10%  Similarity=0.236  Sum_probs=58.2

Q ss_pred             hchhhHHHHHHHHHHhhc----------CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC--Hh
Q 002638          113 LTSTHVTKIISHIVKRLK----------DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN--KG  180 (898)
Q Consensus       113 ~I~PhLpkIL~~IlrrLk----------DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn--k~  180 (898)
                      .+.|||..++|.++.+|-          +..-.+|+-++..++.++..+-...    ...-+-++.-|..+|.++.  ..
T Consensus       251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y----~~l~~ri~~tl~k~l~d~~~~~~  326 (343)
T cd08050         251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY----NTLQPRITRTLLKALLDPKKPLT  326 (343)
T ss_pred             chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC----CcHHHHHHHHHHHHHcCCCCCcc
Confidence            379999999999998872          2334899999999999999993321    2456667778888886653  34


Q ss_pred             HHHHHHHHHHHHH
Q 002638          181 VQSGAAMCMAKMV  193 (898)
Q Consensus       181 VQegAasALAkiI  193 (898)
                      .+.||..+|.++-
T Consensus       327 ~~YGAi~GL~~lG  339 (343)
T cd08050         327 THYGAIVGLSALG  339 (343)
T ss_pred             hhhHHHHHHHHhC
Confidence            5789999998874

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=0.82  Score=52.64  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=109.0

Q ss_pred             HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002638           80 LLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN  159 (898)
Q Consensus        80 fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~  159 (898)
                      .|.-|+..+.+.+..+|+.|+.-|..+...|+..+..|+-.+++-+...+.|-+..||++....+-.+...+..   +..
T Consensus        59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~---e~~  135 (393)
T KOG2149|consen   59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK---EDQ  135 (393)
T ss_pred             cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch---hhh
Confidence            35666666778899999999999999999999999999999999999999999999999999988877777733   223


Q ss_pred             chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC
Q 002638          160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ  218 (898)
Q Consensus       160 ~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~  218 (898)
                      +.++..+++=+.-+|..-.+.+|+-++.-|.-+++..++....+.-.+++.+..+++..
T Consensus       136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~  194 (393)
T KOG2149|consen  136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL  194 (393)
T ss_pred             cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence            46678888888888888899999999999999999876654444434555555555433

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=1.4  Score=54.05  Aligned_cols=265  Identities=16%  Similarity=0.176  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHcC---CChhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-c
Q 002638           41 MKQKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-T  114 (898)
Q Consensus        41 LK~rll~~L~KL---sDrDT~k~Aa~eLD~Ia~~L~pe~--Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I  114 (898)
                      +...+...|.+.   .+.-+++.|+-.+.++-. ++++.  =..|+..|.+...+.+|.|=-.|+.+|..|.+.+.+. .
T Consensus       118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~  196 (734)
T KOG1061|consen  118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL  196 (734)
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence            333444444444   233355666555555543 22222  2344555555555677777777888888887777642 2


Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE  194 (898)
                      ....+.++-.++.+|..-+   -..-+..+..++.+..++.     .-...++..+...|...|..|+.+|.-.+-..+.
T Consensus       197 ~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d~-----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~  268 (734)
T KOG1061|consen  197 LELNPQLINKLLEALNECT---EWGQIFILDCLAEYVPKDS-----REAEDICERLTPRLQHANSAVVLSAVKVILQLVK  268 (734)
T ss_pred             ccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCCc-----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence            2222233333333332221   2222333444444442221     1123344444444445555555555555544444


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-------------------------------ccCccc
Q 002638          195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-------------------------------AIAPQS  243 (898)
Q Consensus       195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-------------------------------a~~~py  243 (898)
                      ...+.-..++.++-|.|+.++..+. -..-.+|.=|+-+....                               -.....
T Consensus       269 ~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n  347 (734)
T KOG1061|consen  269 YLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN  347 (734)
T ss_pred             HHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH
Confidence            4333222344455555555555443 11212222222221110                               011234


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcCCCC
Q 002638          244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDV  323 (898)
Q Consensus       244 ld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~~d~  323 (898)
                      +..++.-|.++.++-|-+.=+.|+.|||.+|.-..+.     ..||..|...-.-|+.   -++.+++...+.+...|..
T Consensus       348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~---yvvqE~~vvi~dilRkyP~  419 (734)
T KOG1061|consen  348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVD---YVVQEAIVVIRDILRKYPN  419 (734)
T ss_pred             HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhccc---ceeeehhHHHHhhhhcCCC
Confidence            5567777778888888888888999999999988764     6777766544434444   2333466666666666544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.42  E-value=2.3  Score=52.46  Aligned_cols=202  Identities=14%  Similarity=0.160  Sum_probs=132.1

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~  156 (898)
                      ..+++.+|..-..+..-.+=-++.+++-.+....+..+.|    -++.+.-.|.-|.+.+|.++..+|-.+|.....   
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~---  315 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ---  315 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc---
Confidence            4566666665554444455666777776666666666666    567777778889999999999999999988732   


Q ss_pred             cCCchhHHhhHHH-HHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638          157 ENNGTVVGLFVKP-LFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       157 e~~~~~~~~lL~p-L~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~  235 (898)
                            ....+.+ |-.++.+.|+.+-.=|...|-|-.-   +   .-.+.|+-.+.....+-+-.-|-..+++|.++..
T Consensus       316 ------~v~~cN~elE~lItd~NrsIat~AITtLLKTG~---e---~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~  383 (865)
T KOG1078|consen  316 ------AVTVCNLDLESLITDSNRSIATLAITTLLKTGT---E---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCL  383 (865)
T ss_pred             ------cccccchhHHhhhcccccchhHHHHHHHHHhcc---h---hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHh
Confidence                  1223322 3333466777665444444333321   1   1244555555555554332233456777777743


Q ss_pred             ccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCC
Q 002638          236 VGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKI  300 (898)
Q Consensus       236 vGa~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKv  300 (898)
                         .|+.--..+|..|.+.|.+ .-..-+++..|++..++...++.=.+-+..+.+++|.|.|..+
T Consensus       384 ---~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i  446 (865)
T KOG1078|consen  384 ---KFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQI  446 (865)
T ss_pred             ---hccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHH
Confidence               4555556677788887766 3577899999999999998886666677888888898988855

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.20  E-value=6.7  Score=44.79  Aligned_cols=178  Identities=17%  Similarity=0.160  Sum_probs=116.2

Q ss_pred             hhhHHHHHHHHHHHHHHhchhchh--hHHHHHHH-HHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchh-HHhh
Q 002638           93 PAVKKESVRLLALVCELHSELTST--HVTKIISH-IVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTV-VGLF  166 (898)
Q Consensus        93 ~~vRKeAIlLLG~IAEg~gd~I~P--hLpkIL~~-IlrrLkDp--Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~-~~~l  166 (898)
                      ...|+....++...-+...+.+.+  ....++.. ....+.++  +..=+..|.+-|--+++.+ +..    ... --..
T Consensus        51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~i-DnA----ndl~~~gg  125 (342)
T KOG2160|consen   51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDI-DNA----NDLISLGG  125 (342)
T ss_pred             ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhh-hhH----HhHhhccC
Confidence            456677777777766655544332  12222222 33444444  4566889999999999988 321    111 1235


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccH
Q 002638          167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSL  244 (898)
Q Consensus       167 L~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyl  244 (898)
                      +.+|+..|...+..+-+.|+..|.+++++-+..-...+. .-+++|+++|.+. ...+|..+|-+|++++.   .+++..
T Consensus       126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~  202 (342)
T KOG2160|consen  126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQ  202 (342)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHH
Confidence            677777888889999999999999999986432111221 1456777777654 55677889999999985   222233


Q ss_pred             HHHH-----HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc
Q 002638          245 EPLL-----QSIHECLGS--TDWATRKAAADALSALALHSS  278 (898)
Q Consensus       245 d~lL-----p~L~e~Lsd--dDW~vRKaA~EaL~sLA~avg  278 (898)
                      ..++     .+|.++|.+  .+..++.-|+..+..|+....
T Consensus       203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~  243 (342)
T KOG2160|consen  203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK  243 (342)
T ss_pred             HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence            3333     356677777  678888889999999988877

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=93.15  E-value=0.97  Score=57.97  Aligned_cols=177  Identities=10%  Similarity=0.165  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V  136 (898)
                      .+..-++.|..+...+....+..++.++......+.|..|--.++.+........+.+...+++++.+++..|.|++-.|
T Consensus       145 Vre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv  224 (1549)
T KOG0392|consen  145 VREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV  224 (1549)
T ss_pred             hHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence            45556677888888887777888888888776677899999999999888888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCH-hH-HHHHHHHHHHHHHhc--CCCCch-hH-HHHHHH
Q 002638          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK-GV-QSGAAMCMAKMVECA--SDPPVV-AF-QKLCAR  210 (898)
Q Consensus       137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk-~V-QegAasALAkiIE~a--~d~~~~-yL-~~LlPR  210 (898)
                      |..++.++...+..+.+-..    ..+..++.-|...|.+=+- .. -+....-|+++|-..  -+.... -+ ..|+|+
T Consensus       225 ~~~aa~~l~~~~s~~v~l~~----~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~  300 (1549)
T KOG0392|consen  225 RSVAAQFLVPAPSIQVKLMV----QKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPR  300 (1549)
T ss_pred             HHHHHHHhhhhhHHHHhhhH----hHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchh
Confidence            99999988777776633221    2344444444444422111 00 011112223333211  000000 12 368999


Q ss_pred             HHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002638          211 ICKLLSNQNFMAKASLLPVVGSLSQVG  237 (898)
Q Consensus       211 LlkLLks~~~kaK~alL~aIgSLA~vG  237 (898)
                      +...+.|.-+.++.++++.+-.+..+.
T Consensus       301 ~~p~l~~~i~sv~~a~l~~l~~lle~~  327 (1549)
T KOG0392|consen  301 LWPFLRHTISSVRRAALETLAMLLEAD  327 (1549)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999998999999999988886554

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=93.11  E-value=2.6  Score=46.40  Aligned_cols=158  Identities=14%  Similarity=0.188  Sum_probs=105.8

Q ss_pred             HHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc---ccCCchhHHhhHHHHHHHHh
Q 002638          101 RLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK---EENNGTVVGLFVKPLFEAMM  175 (898)
Q Consensus       101 lLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~---~e~~~~~~~~lL~pL~eaL~  175 (898)
                      ..|.-++..+.  ..+..|++-|+|.|+.-+-|.++.+|-..|.++..|...+....   ... ......|-+.|+.+|.
T Consensus        98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~-tGl~~v~~~al~~~L~  176 (282)
T PF10521_consen   98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR-TGLFSVFEDALFPCLY  176 (282)
T ss_pred             HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-cChHHHHHHHHHHHhh
Confidence            45555555333  44889999999999999999999999999999999998773211   000 0124445555555554


Q ss_pred             --------cCCHhHHHHHHHHHHHHHHhcCC----CCchhHHHHHHH-HHHHhcC----CchhhHHHHHHHHHHHHh-cc
Q 002638          176 --------EQNKGVQSGAAMCMAKMVECASD----PPVVAFQKLCAR-ICKLLSN----QNFMAKASLLPVVGSLSQ-VG  237 (898)
Q Consensus       176 --------eqnk~VQegAasALAkiIE~a~d----~~~~yL~~LlPR-LlkLLks----~~~kaK~alL~aIgSLA~-vG  237 (898)
                              ++...+-..|.-||..++.-...    .-...+.+++-. ++.-+.+    ++......++..+..++. .|
T Consensus       177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG  256 (282)
T PF10521_consen  177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG  256 (282)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence                    45666777888888888764311    111234444433 4444443    246677788888888874 56


Q ss_pred             ccCcccHHHHHHHHHHhhCCCC
Q 002638          238 AIAPQSLEPLLQSIHECLGSTD  259 (898)
Q Consensus       238 a~~~pyld~lLp~L~e~LsddD  259 (898)
                      -....|+..+++.|.+.+.+.+
T Consensus       257 i~~~~hL~rii~~l~~~l~npf  278 (282)
T PF10521_consen  257 ISSVKHLQRIIPVLSQILENPF  278 (282)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCC
Confidence            5667899999999999988754

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=93.06  E-value=4.2  Score=47.80  Aligned_cols=221  Identities=16%  Similarity=0.201  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHH-HHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHHHHHHhhcCCC-
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLN-CLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSD-  133 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs-~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~~IlrrLkDpD-  133 (898)
                      +|-.|+..|-.+...++.+.+..++. .|...+++.-...|-.+.+++..-+..+... ..+..+.+.+.+...|.++. 
T Consensus       103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~  182 (441)
T PF12054_consen  103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEP  182 (441)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCC
Confidence            66678888888888886666666666 4677777777888888988888888877644 22224455666666666443 


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHh-------------cc-c----------------------------c-----
Q 002638          134 ----------SGMKEACRDSIGSLSKLYL-------------NG-K----------------------------E-----  156 (898)
Q Consensus       134 ----------s~VR~Ac~~tLG~LA~~li-------------k~-~----------------------------~-----  156 (898)
                                ..||.-|...+..+..+..             +. .                            .     
T Consensus       183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~  262 (441)
T PF12054_consen  183 PYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLS  262 (441)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccch
Confidence                      3556666666666665554             10 0                            0     


Q ss_pred             -----------------------------------------cCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002638          157 -----------------------------------------ENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       157 -----------------------------------------e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE  194 (898)
                                                               ....+....+++||++.+ .|.|...|.-||.+|+.+|+
T Consensus       263 a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~  342 (441)
T PF12054_consen  263 ALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARLIQ  342 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence                                                     000013667888888888 67889999999999999998


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638          195 CASDPPVVAFQKLCARICKLLSN-----QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADA  269 (898)
Q Consensus       195 ~a~d~~~~yL~~LlPRLlkLLks-----~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea  269 (898)
                      .+-.--..--++|+-.|+.+|-.     |.|.......+-|-++..-.....    .....-.+--...-.=.|+.|..+
T Consensus       343 ~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~----~~~~~~~~~~~~~a~I~RrGA~~a  418 (441)
T PF12054_consen  343 LCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKAD----HADAASEEREQKEARIQRRGAELA  418 (441)
T ss_pred             HHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccccc----ccccccchhhhhhhHHHhcCHHHH
Confidence            75322223456777777777732     333322233334444432110000    000000001111123468889999


Q ss_pred             HHHHHHhcchHH
Q 002638          270 LSALALHSSNLV  281 (898)
Q Consensus       270 L~sLA~avge~L  281 (898)
                      |..|+...|+.+
T Consensus       419 L~~l~~~FG~~L  430 (441)
T PF12054_consen  419 LEQLAKRFGSSL  430 (441)
T ss_pred             HHHHHHHHhHHH
Confidence            999999999443

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.82  E-value=8.2  Score=51.90  Aligned_cols=235  Identities=17%  Similarity=0.189  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh-hcCCC
Q 002638           57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPK-PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSD  133 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k-~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr-LkDpD  133 (898)
                      ..-.|+..|.+..-.+.+.+ +..-+..|+.-.++.+ |.++.-++.++..+++.++....-|...-++-+... |.+|.
T Consensus       935 ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~ 1014 (2067)
T KOG1822|consen  935 GHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT 1014 (2067)
T ss_pred             HHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc
Confidence            44477888888888776544 5554555655544444 589999999999999999987777777777766666 45555


Q ss_pred             h--HHHHHHHHHHH------HHHHHHhcccccCC----chhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638          134 S--GMKEACRDSIG------SLSKLYLNGKEENN----GTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPP  200 (898)
Q Consensus       134 s--~VR~Ac~~tLG------~LA~~lik~~~e~~----~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~  200 (898)
                      .  .|+......+.      .+..-+..+-..++    -..+..++-.-...+. ..++-+|++|+.||..+==.++.  
T Consensus      1015 ~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr-- 1092 (2067)
T KOG1822|consen 1015 SHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR-- 1092 (2067)
T ss_pred             chhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--
Confidence            4  45555555544      77777644311111    1223333222222223 44889999999999988655543  


Q ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHH-------------------H-HHHhh-CCC
Q 002638          201 VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQ-------------------S-IHECL-GST  258 (898)
Q Consensus       201 ~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp-------------------~-L~e~L-sdd  258 (898)
                      .--++.|++.|+.+|.+.+.-.|.+.+.|+.-++.-. .....|...+.+                   . ++..| ...
T Consensus      1093 ~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~ 1172 (2067)
T KOG1822|consen 1093 HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTET 1172 (2067)
T ss_pred             hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCch
Confidence            1247789999999999998888777788877776322 111111111111                   0 11112 234


Q ss_pred             CHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH
Q 002638          259 DWATRKAAADALSALALHSS-NLVIDGATSTLTVLE  293 (898)
Q Consensus       259 DW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE  293 (898)
                      |-.+++--.++|..+....- +.|..++..|.+++.
T Consensus      1173 d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1173 DNKLLKNILETLSRMLNSLADELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            56666777777777554444 667766666666665

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.77  E-value=0.27  Score=56.31  Aligned_cols=130  Identities=14%  Similarity=0.116  Sum_probs=83.7

Q ss_pred             CChhHHHHHHH-HHHHHHhcCCCCCHHHHHHHHhhh------cCCCChhhHHHHHHHHHHHHHHhch---------hchh
Q 002638           53 ADRDTHQIAIE-DLEKTIQTLSQESLPMLLNCLYES------SNDPKPAVKKESVRLLALVCELHSE---------LTST  116 (898)
Q Consensus        53 sDrDT~k~Aa~-eLD~Ia~~L~pe~Lp~fLs~L~es------~~s~k~~vRKeAIlLLG~IAEg~gd---------~I~P  116 (898)
                      +|-+|++.|+. -|..+.........+.++.++...      ..+.+|..+..|+.+++.++.....         .+.+
T Consensus       222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~  301 (370)
T PF08506_consen  222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD  301 (370)
T ss_dssp             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred             cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence            45566665555 455666555433344444444332      3467899999999999999876521         1223


Q ss_pred             hHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638          117 HVTKIISHIVKRLK---DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (898)
Q Consensus       117 hLpkIL~~IlrrLk---DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasAL  189 (898)
                      ...-...+|+.-|+   ...|.+|..|++.+..+-.++.       .+.+..+++.|+..|..++..|..-||.|+
T Consensus       302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            33344445555566   4568999999999999988873       256888999999999999999998888875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.77  E-value=13  Score=50.64  Aligned_cols=248  Identities=13%  Similarity=0.089  Sum_probs=144.3

Q ss_pred             HHHHHHh---cCCCCCHHHHHHHHhhhcC-CC--ChhhHHHHHHHHHHHHHHhchhchh----hHHHHHHHHHHhhcCCC
Q 002638           64 DLEKTIQ---TLSQESLPMLLNCLYESSN-DP--KPAVKKESVRLLALVCELHSELTST----HVTKIISHIVKRLKDSD  133 (898)
Q Consensus        64 eLD~Ia~---~L~pe~Lp~fLs~L~es~~-s~--k~~vRKeAIlLLG~IAEg~gd~I~P----hLpkIL~~IlrrLkDpD  133 (898)
                      .+++|-.   .|+.+.|..|+.+|..-.. ..  ...-|--++.-|..++....+.+.=    .+..|-.++++.-.+++
T Consensus      1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076       1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence            5566654   4677778888888875421 10  1234777888887887777766543    44446666666556667


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 002638          134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC  212 (898)
Q Consensus       134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLl  212 (898)
                      ..|+--|.++|.+|+-.++....-.+-..-..||+|+...|. ..+..+++-...|+..+++....-+..--..++-=|.
T Consensus      1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076       1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence            789999999999999988653100011223479999998884 5678999999999999998753333222222333333


Q ss_pred             HHhcCCchhhHHHHHHHHHHHHhcc-ccC----cccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcc--------
Q 002638          213 KLLSNQNFMAKASLLPVVGSLSQVG-AIA----PQSLEPLLQSIHECLGST-DWATRKAAADALSALALHSS--------  278 (898)
Q Consensus       213 kLLks~~~kaK~alL~aIgSLA~vG-a~~----~pyld~lLp~L~e~Lsdd-DW~vRKaA~EaL~sLA~avg--------  278 (898)
                      ......+..+-..+++++.-|..-. ..+    ...+..++-+|.++.... +..+=..|++.|-.++..+-        
T Consensus      1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~ 1310 (1780)
T PLN03076       1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSS 1310 (1780)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccc
Confidence            3333444333334455555443211 111    246667777777776542 22232344444443322220        


Q ss_pred             ----------------------------hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638          279 ----------------------------NLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL  311 (898)
Q Consensus       279 ----------------------------e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL  311 (898)
                                                  +...-+-=.++..|..+..|...+||..|++.|
T Consensus      1311 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtL 1371 (1780)
T PLN03076       1311 RNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1371 (1780)
T ss_pred             cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence                                        011112233455555667788888999988776

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.75  E-value=2.6  Score=51.65  Aligned_cols=172  Identities=12%  Similarity=0.111  Sum_probs=113.3

Q ss_pred             HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-
Q 002638           36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-  113 (898)
Q Consensus        36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-  113 (898)
                      ..-.++.-.+.-++++....++.-+-++-+|.|++.++++. ...+|+.|+....+.+..+.+.++..+..+++..... 
T Consensus       345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~  424 (700)
T KOG2137|consen  345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF  424 (700)
T ss_pred             hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH
Confidence            33455556666667766667788899999999999987655 8889999999888888999999999999999976522 


Q ss_pred             chhhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638          114 TSTHVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       114 I~PhLpkIL~~Ilr-rLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki  192 (898)
                      +.   ..|+|.|.. .++.....|+..|..+++.++..+ +.      ...-..+.|++.++...++.+-.+-....+++
T Consensus       425 vk---~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-D~------~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l  494 (700)
T KOG2137|consen  425 VK---QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-DK------AAVLDELLPILKCIKTRDPAIVMGFLRIYEAL  494 (700)
T ss_pred             HH---HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-HH------HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            21   223333322 466678899999999999999777 21      12334556777777666666654433333333


Q ss_pred             HHhcCCCCchhHHHHHHHHHHHhcC
Q 002638          193 VECASDPPVVAFQKLCARICKLLSN  217 (898)
Q Consensus       193 IE~a~d~~~~yL~~LlPRLlkLLks  217 (898)
                      .=.......-.-+.+||.++.+...
T Consensus       495 ~~~~~~g~ev~~~~VlPlli~ls~~  519 (700)
T KOG2137|consen  495 ALIIYSGVEVMAENVLPLLIPLSVA  519 (700)
T ss_pred             Hhhcccceeeehhhhhhhhhhhhhc
Confidence            2221211111234566666655443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.67  E-value=1.2  Score=49.29  Aligned_cols=217  Identities=13%  Similarity=0.094  Sum_probs=116.0

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc---hhhHH----HHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT---STHVT----KIISHIVKRLKDSDSGMKEACRDSIGSLSK  149 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I---~PhLp----kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~  149 (898)
                      ...|+..|...  +.+..+.+..+.+++.+....+...   ..+-.    .....+++.|.-+|..|...++..++.|+.
T Consensus        57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33445444433  4567888888888888888776432   22111    255667778888999999999999999988


Q ss_pred             HHhcccccCCchhHHhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHh------c-
Q 002638          150 LYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLL------S-  216 (898)
Q Consensus       150 ~lik~~~e~~~~~~~~lL~pL~eaL~e----qnk~VQegAasALAkiIE~a--~d~~~~yL~~LlPRLlkLL------k-  216 (898)
                      +.-...    ......+++.++..|.+    .+..+|..|+.||+.++..-  +.....  ...++.|..+|      + 
T Consensus       135 ~~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~  208 (312)
T PF03224_consen  135 QGPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSN  208 (312)
T ss_dssp             STTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-------
T ss_pred             cCCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCC
Confidence            873221    12124678888888854    34567889999999999642  111111  35666667777      2 


Q ss_pred             CCchhhHHHHHHHHHHHH---h-ccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcchHHHhh-----HH
Q 002638          217 NQNFMAKASLLPVVGSLS---Q-VGAIAPQSLEPLLQSIHECLGST-DWATRKAAADALSALALHSSNLVIDG-----AT  286 (898)
Q Consensus       217 s~~~kaK~alL~aIgSLA---~-vGa~~~pyld~lLp~L~e~Lsdd-DW~vRKaA~EaL~sLA~avge~L~Py-----~~  286 (898)
                      +.+++..-.++-|+=-+.   . ++.....|   ++|.|.+.+... --.+=+-++-+|..++....+.+.+-     +.
T Consensus       209 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l  285 (312)
T PF03224_consen  209 SSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL  285 (312)
T ss_dssp             --HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred             CCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence            234555555555554442   1 11222333   788888876652 22333344556666665555433333     34


Q ss_pred             HHHHHHHhhhcCCChhhHH
Q 002638          287 STLTVLEACRFDKIKPVRD  305 (898)
Q Consensus       287 ~~I~~LE~~RfDKvKpVRD  305 (898)
                      .+++.|+..++ .++.+.|
T Consensus       286 ~~l~~L~~rk~-~Dedl~e  303 (312)
T PF03224_consen  286 KTLQNLSERKW-SDEDLTE  303 (312)
T ss_dssp             HHHHHHHSS---SSHHHHH
T ss_pred             HHHHHHhcCCC-CCHHHHH
Confidence            45566666666 4443444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=92.65  E-value=1.3  Score=42.17  Aligned_cols=86  Identities=12%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcC----CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h
Q 002638          206 KLCARICKLLSN----QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N  279 (898)
Q Consensus       206 ~LlPRLlkLLks----~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e  279 (898)
                      -++.++-..+.+    ..+.-|..+|.+|+.++..+ .....+..++|.+|...+..+  .+|..|++|...+...++ +
T Consensus        11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~   88 (107)
T PF08064_consen   11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE   88 (107)
T ss_pred             HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence            355666666655    45666778899999998755 666777888888888888876  899999999999999999 8


Q ss_pred             HHHhhHHHHHHHHH
Q 002638          280 LVIDGATSTLTVLE  293 (898)
Q Consensus       280 ~L~Py~~~~I~~LE  293 (898)
                      .+.|+++.++-++.
T Consensus        89 ~l~~ll~~~~~~l~  102 (107)
T PF08064_consen   89 DLGPLLDQIFAILL  102 (107)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999999887664

; GO: 0004674 protein serine/threonine kinase activity

>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]

Probab=92.64  E-value=5.3  Score=46.10  Aligned_cols=209  Identities=16%  Similarity=0.106  Sum_probs=125.8

Q ss_pred             CChhhHHHHHHHHHHH--HHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638           91 PKPAVKKESVRLLALV--CELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (898)
Q Consensus        91 ~k~~vRKeAIlLLG~I--AEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~  168 (898)
                      .....|.+++.-+.++  ++.+++.+.|-...+...+.+.|+-|++.=.-.+.-.+|.++-.+. + ++.+++......+
T Consensus        72 k~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg-~-~q~~ee~~~t~~~  149 (427)
T KOG2842|consen   72 KSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAG-P-GQEEEEWTKTLGP  149 (427)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhcc-C-cchhhHHHhccch
Confidence            3455688877665544  5667788999989999999999999998777777777787777772 1 2223344444555


Q ss_pred             HHHHHHhcCCHhHH--HHHHHHHHHHHHhc-CCCCchhHHHHHHHHHH----HhcCCc-----hhhHHHHHHHHHHHH--
Q 002638          169 PLFEAMMEQNKGVQ--SGAAMCMAKMVECA-SDPPVVAFQKLCARICK----LLSNQN-----FMAKASLLPVVGSLS--  234 (898)
Q Consensus       169 pL~eaL~eqnk~VQ--egAasALAkiIE~a-~d~~~~yL~~LlPRLlk----LLks~~-----~kaK~alL~aIgSLA--  234 (898)
                      .++-.+.+++..++  ..+|.||+..|-.+ .+.+.-+.-.+|-...-    +.....     .+.-..++.|+.+=+  
T Consensus       150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~  229 (427)
T KOG2842|consen  150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL  229 (427)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence            55555566666665  56777888777654 33222222223322211    222211     111112222222211  


Q ss_pred             -hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCCh
Q 002638          235 -QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIK  301 (898)
Q Consensus       235 -~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg----e~L~Py~~~~I~~LE~~RfDKvK  301 (898)
                       ...  +..........|.|-.+|..++-..|.++.+++..|.....    +.+-|-++.+...|.....|..|
T Consensus       230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssK  303 (427)
T KOG2842|consen  230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSK  303 (427)
T ss_pred             HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhh
Confidence             011  11112222355778888999999999999998888776654    66778889988888877766443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=92.38  E-value=1.2  Score=52.36  Aligned_cols=205  Identities=15%  Similarity=0.177  Sum_probs=130.2

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccccc---CCchhH
Q 002638           88 SNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE---NNGTVV  163 (898)
Q Consensus        88 ~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e---~~~~~~  163 (898)
                      .++.+..+|.+|++++++.+-.++-. ..-+...-..-|+..|.|..-.+|.-+.|++|.+...++...+.   ......
T Consensus       400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s  479 (728)
T KOG4535|consen  400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS  479 (728)
T ss_pred             cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence            35667889999999999887766533 45566677778889999999999999999999999999764211   011223


Q ss_pred             HhhHHHHHHHHh---cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHHhcC---C-chhhHHHHHHHHHHHHh
Q 002638          164 GLFVKPLFEAMM---EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR-ICKLLSN---Q-NFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       164 ~~lL~pL~eaL~---eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPR-LlkLLks---~-~~kaK~alL~aIgSLA~  235 (898)
                      ..++..++.+-.   ..+-.|..-|+-+|..+.+-.......-+..++.- +.+++..   + .+++|..+--+||-++.
T Consensus       480 g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  480 GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            333333333321   23556788888888887775432222223333322 2222222   2 57888877778888875


Q ss_pred             ccc---cCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHH
Q 002638          236 VGA---IAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS--NLVIDGATSTLTVL  292 (898)
Q Consensus       236 vGa---~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~L  292 (898)
                      -.+   ...+....+-+.|...+.+ .+..+|..|+-+|...+.-.+  +.|.-.....+.+|
T Consensus       560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aL  622 (728)
T KOG4535|consen  560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTAL  622 (728)
T ss_pred             CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHH
Confidence            332   2245666777777777655 778999999999888777666  43433334444333

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.26  E-value=4.7  Score=49.49  Aligned_cols=155  Identities=8%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-h----hchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-E----LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d----~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l  151 (898)
                      +..+=++|....+-.+..||..|..+|=..-=.-+ +    .+-.-+.+=.-.+...|.|+-|.||+.+...+-.+...+
T Consensus       172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f  251 (1005)
T KOG1949|consen  172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF  251 (1005)
T ss_pred             HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            34455677777788889999999888754422222 2    222334444557788899999999999988777666554


Q ss_pred             hcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 002638          152 LNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVV  230 (898)
Q Consensus       152 ik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aI  230 (898)
                      -.-.+   ..++..+|.-+++.| .+..-.|.-+.+.||..+..+  .+..+.|..++|++-..|.+.+.++|.|.++.|
T Consensus       252 We~iP---~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l  326 (1005)
T KOG1949|consen  252 WEMIP---PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDML  326 (1005)
T ss_pred             HHHcC---HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence            32111   245677777788877 355557777788888888763  334578999999999999999999999999988


Q ss_pred             HHHHhc
Q 002638          231 GSLSQV  236 (898)
Q Consensus       231 gSLA~v  236 (898)
                      .-+-.+
T Consensus       327 l~ik~v  332 (1005)
T KOG1949|consen  327 LKIKAV  332 (1005)
T ss_pred             HHHHhh
Confidence            877433

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=92.26  E-value=6.7  Score=46.75  Aligned_cols=201  Identities=18%  Similarity=0.200  Sum_probs=115.2

Q ss_pred             hhHhHHHHHHHHHHHHHcC--CC---------------hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhh--h--cCCCC
Q 002638           34 SHLAMVEMKQKILTSLSKL--AD---------------RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYE--S--SNDPK   92 (898)
Q Consensus        34 ~~~~~~eLK~rll~~L~KL--sD---------------rDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~e--s--~~s~k   92 (898)
                      ..+.+.+.|..++..|..-  .|               .+....|-..|.++...+....+...|-.|+-  .  ..+..
T Consensus       213 ~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~  292 (501)
T PF13001_consen  213 SRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGR  292 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCC
Confidence            4568999999999988554  23               22556677777777766644344433444432  1  11111


Q ss_pred             hhhHHH-HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC--ChHHHHHHHHHH---HHHHHHHhcccccCCchhHHhh
Q 002638           93 PAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDS--DSGMKEACRDSI---GSLSKLYLNGKEENNGTVVGLF  166 (898)
Q Consensus        93 ~~vRKe-AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp--Ds~VR~Ac~~tL---G~LA~~lik~~~e~~~~~~~~l  166 (898)
                      ++++-. -.++|..+++...-.  .+.+.++..+..+|...  .+.+|..+..-+   .....++               
T Consensus       293 ~pa~~~lq~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~---------------  355 (501)
T PF13001_consen  293 PPASPRLQEKILSLLSKSVIAA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI---------------  355 (501)
T ss_pred             CCCCHHHHHHHHHHHHHhHHHH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc---------------
Confidence            222221 245555555533222  23355666666777666  556666665544   2222222               


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh--------cCCchhhHHHHHHHHHHHHhcc-
Q 002638          167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL--------SNQNFMAKASLLPVVGSLSQVG-  237 (898)
Q Consensus       167 L~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLL--------ks~~~kaK~alL~aIgSLA~vG-  237 (898)
                                     .......|..+++              ..+.+++        .+.....|..+|.+||.++..- 
T Consensus       356 ---------------~~~~l~~l~~~i~--------------~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p  406 (501)
T PF13001_consen  356 ---------------SPQILKLLRPVIL--------------SQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP  406 (501)
T ss_pred             ---------------CHHHHHHHHHHHH--------------hcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence                           0111112222222              2222333        1235667889999999998533 


Q ss_pred             ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002638          238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV  281 (898)
Q Consensus       238 a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L  281 (898)
                      ..+..- -.++..|++.|.+++.++|-+.-|||+.|+.+..+.-
T Consensus       407 ~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~  449 (501)
T PF13001_consen  407 SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP  449 (501)
T ss_pred             cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence            333111 3577788888888999999999999999999998543

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.14  E-value=6.6  Score=47.27  Aligned_cols=215  Identities=20%  Similarity=0.127  Sum_probs=111.9

Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHH
Q 002638           62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR  141 (898)
Q Consensus        62 a~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~  141 (898)
                      +..|-.++..++-++|..+...+....  .+...|+.-+-+|..+...      |-+.-|+..|..    .+-.-- -+.
T Consensus       349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~------~av~~i~~~I~~----~~~~~~-ea~  415 (618)
T PF01347_consen  349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTN------PAVKFIKDLIKS----KKLTDD-EAA  415 (618)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SH------HHHHHHHHHHHT----T-S-HH-HHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHc----CCCCHH-HHH
Confidence            677788888776656666666555322  3456666666666543221      122222332322    221111 133


Q ss_pred             HHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhc-CC-------------CCchh
Q 002638          142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECA-SD-------------PPVVA  203 (898)
Q Consensus       142 ~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~----eqnk~VQegAasALAkiIE~a-~d-------------~~~~y  203 (898)
                      ..+..|......|        -.+++.-|++.+.    .+++.+..+|+.+++.++-.. ..             ....|
T Consensus       416 ~~l~~l~~~~~~P--------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~  487 (618)
T PF01347_consen  416 QLLASLPFHVRRP--------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKY  487 (618)
T ss_dssp             HHHHHHHHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGG
T ss_pred             HHHHHHHhhcCCC--------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHH
Confidence            4455555555333        2456666666663    457788899999999988652 22             11234


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHhcchH
Q 002638          204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST---DWATRKAAADALSALALHSSNL  280 (898)
Q Consensus       204 L~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsdd---DW~vRKaA~EaL~sLA~avge~  280 (898)
                      ++.|...|.......+...+..+|.+||=+   |  .    ..+++.|..++.+.   ...+|.+|+.+|..++...++.
T Consensus       488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~---g--~----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~  558 (618)
T PF01347_consen  488 VPYLEQELKEAVSRGDEEEKIVYLKALGNL---G--H----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK  558 (618)
T ss_dssp             THHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHhhcc---C--C----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence            555555555555555556566666666654   2  1    23555565665554   6889999999999887766665


Q ss_pred             HHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638          281 VIDGATSTLTVLEACRFDKIKPVRDSMNEAL  311 (898)
Q Consensus       281 L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL  311 (898)
                      +.+.+-+   ++...  ....+||=+|..+|
T Consensus       559 v~~~l~~---I~~n~--~e~~EvRiaA~~~l  584 (618)
T PF01347_consen  559 VREILLP---IFMNT--TEDPEVRIAAYLIL  584 (618)
T ss_dssp             HHHHHHH---HHH-T--TS-HHHHHHHHHHH
T ss_pred             HHHHHHH---HhcCC--CCChhHHHHHHHHH
Confidence            5544332   22221  12344777654443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=92.12  E-value=23  Score=40.97  Aligned_cols=212  Identities=14%  Similarity=0.205  Sum_probs=126.6

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHH-----HHhhhc--CCCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLN-----CLYESS--NDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIIS  123 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs-----~L~es~--~s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~  123 (898)
                      .+++.+..|+.-|.-++.  +++.+..++.     +|.-++  .+..-..|++|++++-.+.+...  +.+.   .-|+.
T Consensus        37 ~~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---~~vvr  111 (371)
T PF14664_consen   37 DSKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---RGVVR  111 (371)
T ss_pred             CcHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC---HHHHH
Confidence            458889999988887776  3333333322     111111  23346689999999999999843  3333   44577


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCc
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPV  201 (898)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a--~d~~~  201 (898)
                      .|+....+++-..|.+|.+++..|+-.-.+-      -....-++.|++++.|..-.+.+..+.++-.+++.-  +.-..
T Consensus       112 alvaiae~~~D~lr~~cletL~El~l~~P~l------v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~  185 (371)
T PF14664_consen  112 ALVAIAEHEDDRLRRICLETLCELALLNPEL------VAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR  185 (371)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHhhCHHH------HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence            7777778899999999999988887543110      012224577888887754446667777777777653  11111


Q ss_pred             h-h-HHHHHHHHHHH----hcCCc-h-hhHHHHHHHHHHHHh--cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638          202 V-A-FQKLCARICKL----LSNQN-F-MAKASLLPVVGSLSQ--VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADA  269 (898)
Q Consensus       202 ~-y-L~~LlPRLlkL----Lks~~-~-kaK~alL~aIgSLA~--vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea  269 (898)
                      + + |+.|+--+...    .+..+ . +.+ ..-.+|.++..  .|  ....+-+ .-+..|.++|.-+...+|+...|.
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDL  263 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHH
Confidence            1 1 44444444433    22111 1 222 22333444432  34  1222333 567788899999999999999999


Q ss_pred             HHHHHHhc
Q 002638          270 LSALALHS  277 (898)
Q Consensus       270 L~sLA~av  277 (898)
                      |..+...-
T Consensus       264 l~dllrik  271 (371)
T PF14664_consen  264 LFDLLRIK  271 (371)
T ss_pred             HHHHHCCC
Confidence            99766533

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=92.03  E-value=25  Score=39.65  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=95.4

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c---CCCChhhHHHHHHHHHHHHHHhchhc----hhhHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S---NDPKPAVKKESVRLLALVCELHSELT----STHVTKI  121 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es----~---~s~k~~vRKeAIlLLG~IAEg~gd~I----~PhLpkI  121 (898)
                      -|.+.-.+...-+.++-..+. +.++.++..+.+.    +   -..-|..|..-..+|..+.+.|...+    .+.+..+
T Consensus        88 r~~evL~l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~  166 (319)
T PF08767_consen   88 REPEVLSLMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLV  166 (319)
T ss_dssp             S-HHHHHHHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHH
T ss_pred             cChhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Confidence            355566666666677666554 4677777777654    2   23458999999999999999998764    4578999


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh----HHhhHHHHHHHHhcCC-H---hHHHHHHHHHHHHH
Q 002638          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV----VGLFVKPLFEAMMEQN-K---GVQSGAAMCMAKMV  193 (898)
Q Consensus       122 L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~----~~~lL~pL~eaL~eqn-k---~VQegAasALAkiI  193 (898)
                      +-.|+.+++++...|-..|+.++..|...+.....+.....    +-.++.-+|..|.|.. +   ..|......|=.++
T Consensus       167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~v  246 (319)
T PF08767_consen  167 IDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLV  246 (319)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999966111111122    3344455555555442 2   33433444444444


Q ss_pred             Hh
Q 002638          194 EC  195 (898)
Q Consensus       194 E~  195 (898)
                      |.
T Consensus       247 e~  248 (319)
T PF08767_consen  247 ES  248 (319)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=91.95  E-value=19  Score=42.48  Aligned_cols=241  Identities=12%  Similarity=0.091  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c-CCCChhhHHHHHHHHHHHHHH
Q 002638           38 MVEMKQKILTSLSKLA---DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S-NDPKPAVKKESVRLLALVCEL  109 (898)
Q Consensus        38 ~~eLK~rll~~L~KLs---DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es----~-~s~k~~vRKeAIlLLG~IAEg  109 (898)
                      +..|-+.+...+.+-+   +...-|+.+.-|-.+-+.+.| ....++..|...    . +-.||..-....-.+|.+++.
T Consensus        24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p-~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~  102 (435)
T PF03378_consen   24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP-IAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF  102 (435)
T ss_dssp             HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence            3566677777776643   222444444444333333222 233444444322    2 334566666677788888776


Q ss_pred             hch----hchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHH
Q 002638          110 HSE----LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSG  184 (898)
Q Consensus       110 ~gd----~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQeg  184 (898)
                      ..+    .+..+-+.++|.+..-|+..-...--=+-..++.|.+...   .+...+.+..++++|+.-.. +..-++ -|
T Consensus       103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~---~~~~p~~y~~L~~~Ll~p~lWe~~gni-Pa  178 (435)
T PF03378_consen  103 VCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP---SSPLPDAYKQLFPPLLSPALWERRGNI-PA  178 (435)
T ss_dssp             S-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHTSGGGGGSTTTH-HH
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcHHHHHHHHHHcCcchhccCCCc-Cc
Confidence            443    2445666666666666654322222222334555555552   11223445566666665442 333344 34


Q ss_pred             HHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCC-CC
Q 002638          185 AAMCMAKMVECASDPPV--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGS-TD  259 (898)
Q Consensus       185 AasALAkiIE~a~d~~~--~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~Lsd-dD  259 (898)
                      ...-|.++++..+..+.  +.+..++-.+-+++.+.....  ...+.+.+++. .. ....+|+..++..|+..|.. ..
T Consensus       179 lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT  256 (435)
T PF03378_consen  179 LVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT  256 (435)
T ss_dssp             HHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            45566777776544333  578888888899998875432  34567777764 33 56788999999999988874 45


Q ss_pred             HHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002638          260 WATRKAAADALSALALHSS-NLVIDGA  285 (898)
Q Consensus       260 W~vRKaA~EaL~sLA~avg-e~L~Py~  285 (898)
                      ....+.-+-.++.++...| +.+...+
T Consensus       257 ~kf~~~fv~F~~~~~~~~g~~~li~~i  283 (435)
T PF03378_consen  257 EKFVKRFVVFLSLFAIKYGPDFLIQTI  283 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5666666666676666666 5555444

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.91  E-value=22  Score=39.27  Aligned_cols=186  Identities=19%  Similarity=0.146  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc----hhHHhhHHHHHHHHhcCC-----HhHHHHHHH
Q 002638          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG----TVVGLFVKPLFEAMMEQN-----KGVQSGAAM  187 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~----~~~~~lL~pL~eaL~eqn-----k~VQegAas  187 (898)
                      ..+-|-+.|+++|.-+.  --+.+...+.+|+..--.+-.+..+    -.+-..+|-++..+.+.+     +.+ ...|.
T Consensus        61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A~  137 (262)
T PF14225_consen   61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIAE  137 (262)
T ss_pred             CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHH-HHHHH
Confidence            34567778888887665  3455666677776654322111111    123445677777776555     223 35778


Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHH
Q 002638          188 CMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAA  267 (898)
Q Consensus       188 ALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~  267 (898)
                      +|+.+++..+..       =+-+++..+....|+.+..-+.++.+.+. ...|+.|--.++-.|.+.|.+.-.-+|..++
T Consensus       138 ~La~~a~~~~~~-------~La~il~~ya~~~fr~~~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L  209 (262)
T PF14225_consen  138 ALAQVAEAQGLP-------NLARILSSYAKGRFRDKDDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENGPPWLRRKTL  209 (262)
T ss_pred             HHHHHHHhCCCc-------cHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            999999865433       12444555556677777766666555443 1345788888999999999998778899999


Q ss_pred             HHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638          268 DALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       268 EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~  320 (898)
                      ++|..+...+.-. .|+-.++|..+......      +-..+||+..+.+-.+
T Consensus       210 ~iL~~ll~~~d~~-~~~~~dlispllrlL~t------~~~~eAL~VLd~~v~~  255 (262)
T PF14225_consen  210 QILKVLLPHVDMR-SPHGADLISPLLRLLQT------DLWMEALEVLDEIVTR  255 (262)
T ss_pred             HHHHHHhccccCC-CCcchHHHHHHHHHhCC------ccHHHHHHHHHHHHhh
Confidence            9999999888711 44666666655443333      3555788888877754

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.83  E-value=0.37  Score=46.25  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh----------------chhhHHHHHH
Q 002638           60 IAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL----------------TSTHVTKIIS  123 (898)
Q Consensus        60 ~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~----------------I~PhLpkIL~  123 (898)
                      ..+..|-.|+..--|+..+.|+..|....++ .+......+.+|..+.+-..+.                +..+++.|+.
T Consensus         7 kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~   85 (148)
T PF08389_consen    7 KLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILE   85 (148)
T ss_dssp             HHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555543355667777777665543 4677778888888888776541                3346788888


Q ss_pred             HHHHhhcCCC----hHHHHHHHHHHHHHHHHHhcccccCCchhH-HhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638          124 HIVKRLKDSD----SGMKEACRDSIGSLSKLYLNGKEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCM  189 (898)
Q Consensus       124 ~IlrrLkDpD----s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~-~~lL~pL~eaL~eqnk~VQegAasAL  189 (898)
                      ++.+.|....    ..+..++..+++.+..|+.-.      ... ..++..++..|  +++..+++|+.||
T Consensus        86 ~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~------~i~~~~~l~~~~~~l--~~~~~~~~A~~cl  148 (148)
T PF08389_consen   86 ILSQILSQSSSEANEELVKAALKCLKSWISWIPIE------LIINSNLLNLIFQLL--QSPELREAAAECL  148 (148)
T ss_dssp             HHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH------HHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH------HhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence            8888887766    677888888888887766211      111 23778888888  4556699999887

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=91.70  E-value=18  Score=45.30  Aligned_cols=149  Identities=15%  Similarity=0.086  Sum_probs=84.3

Q ss_pred             hhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCC-chhHH--HHHHHHHHHhcCCch--hhHHHHHHHHHHHH
Q 002638          161 TVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPP-VVAFQ--KLCARICKLLSNQNF--MAKASLLPVVGSLS  234 (898)
Q Consensus       161 ~~~~~lL~pL~eaL~eq-nk~VQegAasALAkiIE~a~d~~-~~yL~--~LlPRLlkLLks~~~--kaK~alL~aIgSLA  234 (898)
                      ..+..|+.+|...+... +.....-+.++|+.+--  ++.. ..++.  .|+|.|..+|.....  .+--.++-++|+++
T Consensus       486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI--PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence            45778999999988543 43333334444443332  2222 24565  489999999975422  12223344566655


Q ss_pred             hccccCcccH--HHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc-hHHHhhH---HHHHHHHHhhhcCCChhhHHH
Q 002638          235 QVGAIAPQSL--EPLLQSIHECLGS--TDWATRKAAADALSALALHSS-NLVIDGA---TSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       235 ~vGa~~~pyl--d~lLp~L~e~Lsd--dDW~vRKaA~EaL~sLA~avg-e~L~Py~---~~~I~~LE~~RfDKvKpVRD~  306 (898)
                      .-. .....+  ..+++.|.+.|..  +|-.   .++++++.....+- +.-+.++   .+++.+|-....||.++||.+
T Consensus       564 ~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE---~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~  639 (708)
T PF05804_consen  564 SDP-ECAPLLAKSGLIPTLIELLNAKQEDDE---IVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKV  639 (708)
T ss_pred             CCH-HHHHHHHhCChHHHHHHHHHhhCchHH---HHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHH
Confidence            211 111111  2455556666544  2333   35566555444443 2222232   668899999999999999999


Q ss_pred             HHHHHHHHH
Q 002638          307 MNEALQLWK  315 (898)
Q Consensus       307 A~eALelWK  315 (898)
                      +-.+|+..-
T Consensus       640 ~d~~Ldii~  648 (708)
T PF05804_consen  640 CDNALDIIA  648 (708)
T ss_pred             HHHHHHHHH
Confidence            888887643

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=91.45  E-value=0.33  Score=58.94  Aligned_cols=217  Identities=13%  Similarity=0.171  Sum_probs=138.5

Q ss_pred             HHHcCCChhHHHHHHHHHHHHHhcCCCCCH-HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHH
Q 002638           48 SLSKLADRDTHQIAIEDLEKTIQTLSQESL-PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV  126 (898)
Q Consensus        48 ~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~L-p~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Il  126 (898)
                      .|+.+.=.+..+-.+.-|=.+...++.+.| ..++++|......++-.+|---+.-+...++...+.+.  ..+|+|++.
T Consensus       298 Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~  375 (690)
T KOG1243|consen  298 LLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVA  375 (690)
T ss_pred             HHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHH
Confidence            345553333566667777777777765553 23466666666677888888888777777777666543  367889999


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH
Q 002638          127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK  206 (898)
Q Consensus       127 rrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~  206 (898)
                      .++.|.++.+|..+..++..|+..+-...      .-.++++-|...-.++....-.--..||.++-.......  .=.-
T Consensus       376 ~G~~DTn~~Lre~Tlksm~~La~kL~~~~------Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~v  447 (690)
T KOG1243|consen  376 LGFLDTNATLREQTLKSMAVLAPKLSKRN------LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRV  447 (690)
T ss_pred             hhcccCCHHHHHHHHHHHHHHHhhhchhh------hcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccc
Confidence            99999999999999999999999886542      234566666666555555555455556666665431100  0112


Q ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHH---HHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638          207 LCARICKLLSNQNFMAKASLLPVVGS---LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (898)
Q Consensus       207 LlPRLlkLLks~~~kaK~alL~aIgS---LA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg  278 (898)
                      |.-.+...|++|-..+|.+.+-++.+   .....    .....++|.|.-...|++..+|..|-.++-.-.....
T Consensus       448 L~~aftralkdpf~paR~a~v~~l~at~~~~~~~----~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  448 LASAFTRALKDPFVPARKAGVLALAATQEYFDQS----EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             cchhhhhhhcCCCCCchhhhhHHHhhcccccchh----hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence            45556667788766666543333322   22211    1233677777778888888888888877777666554

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=91.18  E-value=21  Score=40.45  Aligned_cols=84  Identities=13%  Similarity=0.203  Sum_probs=56.3

Q ss_pred             chhhHHHHHHHHHHhh------cCCCh----HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCH--hH
Q 002638          114 TSTHVTKIISHIVKRL------KDSDS----GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK--GV  181 (898)
Q Consensus       114 I~PhLpkIL~~IlrrL------kDpDs----~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk--~V  181 (898)
                      +-||+.++||.|+.+|      .+|+-    .+|+.|++.++-....+....    ...-+-+...|+.+..+.++  ..
T Consensus       271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y----ktLkPRvtrTllKafLD~~k~~sT  346 (450)
T COG5095         271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY----KTLKPRVTRTLLKAFLDREKTEST  346 (450)
T ss_pred             ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh----hhhchHHHHHHHHHHHhcccccch
Confidence            6899999999988775      23432    488888888877776662211    12245566667777766544  58


Q ss_pred             HHHHHHHHHHHHHh-cCCCCc
Q 002638          182 QSGAAMCMAKMVEC-ASDPPV  201 (898)
Q Consensus       182 QegAasALAkiIE~-a~d~~~  201 (898)
                      |-||.-||..+--. .+..+.
T Consensus       347 ~YGalkgls~l~ke~ir~~i~  367 (450)
T COG5095         347 QYGALKGLSILSKEVIRTVIK  367 (450)
T ss_pred             hhhhhhhhhhhchhheeeeec
Confidence            99999999888754 344443

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.12  E-value=9.1  Score=44.12  Aligned_cols=165  Identities=18%  Similarity=0.251  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHhc-h-h--chhhHHHHHHHH-HHhhc--C--------------------CC-hHHHHHHHHHHHHHHHH
Q 002638           99 SVRLLALVCELHS-E-L--TSTHVTKIISHI-VKRLK--D--------------------SD-SGMKEACRDSIGSLSKL  150 (898)
Q Consensus        99 AIlLLG~IAEg~g-d-~--I~PhLpkIL~~I-lrrLk--D--------------------pD-s~VR~Ac~~tLG~LA~~  150 (898)
                      |+..|..+++... . .  ..|||..|+..| ++.|.  |                    .| ...|.||++-+-.|+++
T Consensus       162 al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~  241 (370)
T PF08506_consen  162 ALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK  241 (370)
T ss_dssp             HHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence            5556666655432 2 2  267899888744 33322  1                    11 35688999999999998


Q ss_pred             HhcccccCCchhHHhhHHHHHHHH---hcCCHhHHHHHHHHHHHHHHhc---CC------CCc---hhHH-HHHHHHHHH
Q 002638          151 YLNGKEENNGTVVGLFVKPLFEAM---MEQNKGVQSGAAMCMAKMVECA---SD------PPV---VAFQ-KLCARICKL  214 (898)
Q Consensus       151 lik~~~e~~~~~~~~lL~pL~eaL---~eqnk~VQegAasALAkiIE~a---~d------~~~---~yL~-~LlPRLlkL  214 (898)
                      .-+..    ...+..++..++...   ...|+....||..-+..+.-..   ..      ...   .++. .++|-|. -
T Consensus       242 ~~~~v----~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~  316 (370)
T PF08506_consen  242 FEKQV----TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P  316 (370)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--
T ss_pred             HhHHH----HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-c
Confidence            83321    122333333333322   1346777888877777766443   11      111   2222 3445554 1


Q ss_pred             hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638          215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (898)
Q Consensus       215 Lks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL  270 (898)
                      -.+.+.-.|+-++..|..+..  ..-...+..++|.|..+|.+++.-++.-|+-|+
T Consensus       317 ~~~~~piLka~aik~~~~Fr~--~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  317 DVNSHPILKADAIKFLYTFRN--QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             SS-S-HHHHHHHHHHHHHHGG--GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            123455678888888888754  344668889999999999999999988887764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.02  E-value=2.1  Score=47.54  Aligned_cols=184  Identities=14%  Similarity=0.130  Sum_probs=102.9

Q ss_pred             HHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHH------------HHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002638           42 KQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLP------------MLLNCLYESSNDPKPAVKKESVRLLALVCE  108 (898)
Q Consensus        42 K~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp------------~fLs~L~es~~s~k~~vRKeAIlLLG~IAE  108 (898)
                      ..-++.+|+++ ++.|+.+..+..|+.+...-+ ....            +|-+++. .....++.+...+..+|..++.
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence            34455777788 889999999999999887532 2221            2233332 3456789999999999999988


Q ss_pred             Hhchhch----hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh-cccccCCchhHHhhHHHHHHHH-----hcC-
Q 002638          109 LHSELTS----THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL-NGKEENNGTVVGLFVKPLFEAM-----MEQ-  177 (898)
Q Consensus       109 g~gd~I~----PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~li-k~~~e~~~~~~~~lL~pL~eaL-----~eq-  177 (898)
                      .......    ..|+.++..+...++.++..+...|..+++.|.+.=- +..+     .-...+++|+..|     ... 
T Consensus       135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f-----~~~~~v~~l~~iL~~~~~~~~~  209 (312)
T PF03224_consen  135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF-----WKSNGVSPLFDILRKQATNSNS  209 (312)
T ss_dssp             STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH-----HTHHHHHHHHHHHH--------
T ss_pred             cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH-----HhcCcHHHHHHHHHhhcccCCC
Confidence            7776544    4667777777776666777888999988888863210 0111     0134566677766     222 


Q ss_pred             -CHhHHHHHHHHHHHHHHh--c-CCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh
Q 002638          178 -NKGVQSGAAMCMAKMVEC--A-SDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       178 -nk~VQegAasALAkiIE~--a-~d~~~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~  235 (898)
                       +...|..++.|+=-+.=+  . ......+   ++|.|+.+++. ...|+--.++.++.-++.
T Consensus       210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~  269 (312)
T PF03224_consen  210 SGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLS  269 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred             CchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence             445667788887644321  1 1111112   88888888875 345544455555555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=90.87  E-value=21  Score=44.59  Aligned_cols=219  Identities=16%  Similarity=0.134  Sum_probs=144.7

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhch-------h-ch--hhHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638           89 NDPKPAVKKESVRLLALVCELHSE-------L-TS--THVTKIISHIVKR--LKDSDSGMKEACRDSIGSLSKLYLNGKE  156 (898)
Q Consensus        89 ~s~k~~vRKeAIlLLG~IAEg~gd-------~-I~--PhLpkIL~~Ilrr--LkDpDs~VR~Ac~~tLG~LA~~lik~~~  156 (898)
                      +...|..=+.|+.++=.++|+...       . +.  ..|-.+++.+...  +..+.+.|.---.+.|.++.....-+  
T Consensus       450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--  527 (980)
T KOG2021|consen  450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--  527 (980)
T ss_pred             CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--
Confidence            556788889999999999987432       1 22  4566777777765  67788999999999999999888322  


Q ss_pred             cCCchhHHhhHHHHHHH--HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC----chh---------
Q 002638          157 ENNGTVVGLFVKPLFEA--MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ----NFM---------  221 (898)
Q Consensus       157 e~~~~~~~~lL~pL~ea--L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~----~~k---------  221 (898)
                         .++++.++...++-  |..+|.+|.--|.+-+.+++...+....+|.+.++.++..+|+.+    +++         
T Consensus       528 ---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fdd  604 (980)
T KOG2021|consen  528 ---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDD  604 (980)
T ss_pred             ---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccc
Confidence               13344443333322  235688999999999999999887777889999999999888322    100         


Q ss_pred             ------------------h--H-------------------------------H------HHHHHHHHHHh---------
Q 002638          222 ------------------A--K-------------------------------A------SLLPVVGSLSQ---------  235 (898)
Q Consensus       222 ------------------a--K-------------------------------~------alL~aIgSLA~---------  235 (898)
                                        +  +                               .      .++-+||+++.         
T Consensus       605 qlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~  684 (980)
T KOG2021|consen  605 QLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTE  684 (980)
T ss_pred             cceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcch
Confidence                              0  0                               1      12334555541         


Q ss_pred             --cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638          236 --VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL  311 (898)
Q Consensus       236 --vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL  311 (898)
                        +|  ..|...++.+++.|..+..-  -.+|.++--+++.|-..+|+.+-||++..++.|....--  |    -+.+-+
T Consensus       685 ~qvg~~~vf~~~ldvil~~ls~f~k~--E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~--k----Emvdfl  756 (980)
T KOG2021|consen  685 NQVGNMVVFSNILDVILVTLSFFNKF--ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDL--K----EMVDFL  756 (980)
T ss_pred             hcccHHHHHHHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCH--H----HHHHHH
Confidence              01  11233444555555554444  358889999999999999999999999999877643211  2    233445


Q ss_pred             HHHHHhhcC
Q 002638          312 QLWKKIAGK  320 (898)
Q Consensus       312 elWK~La~~  320 (898)
                      .|..++--+
T Consensus       757 ~flsQLihk  765 (980)
T KOG2021|consen  757 GFLSQLIHK  765 (980)
T ss_pred             HHHHHHHHH
Confidence            555555433

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.85  E-value=10  Score=50.19  Aligned_cols=222  Identities=13%  Similarity=0.054  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-----CCChhhHHHHHHHHH---HHHHHhchhchhhHHHHHHHHHHh
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-----DPKPAVKKESVRLLA---LVCELHSELTSTHVTKIISHIVKR  128 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-----s~k~~vRKeAIlLLG---~IAEg~gd~I~PhLpkIL~~Ilrr  128 (898)
                      +.+++....-.++..++...|.+++..+.+=-.     ......+.-.+..++   .+++.+...+.||..+++--.+-.
T Consensus      1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            455666666666666665556666666553321     111222333333333   335555555789988888766555


Q ss_pred             hcCCC------------hHHHHHHHHHHHHHHHHHhcccccC--Cc-----hhHHhhHHHHHHHHhc----C--CHhHHH
Q 002638          129 LKDSD------------SGMKEACRDSIGSLSKLYLNGKEEN--NG-----TVVGLFVKPLFEAMME----Q--NKGVQS  183 (898)
Q Consensus       129 LkDpD------------s~VR~Ac~~tLG~LA~~lik~~~e~--~~-----~~~~~lL~pL~eaL~e----q--nk~VQe  183 (898)
                      |+--+            ...|  -++..|+|+-.+....+..  +.     +....+..|+...+..    .  ...|-.
T Consensus      1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred             HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence            54433            2334  5566777776665431110  01     2234455566655532    1  222333


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHH
Q 002638          184 GAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWAT  262 (898)
Q Consensus       184 gAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e~LsddDW~v  262 (898)
                      ....|++.+--.+++.    +.+|..++++-..+...++|-.+|-.+-.++. .|....+.+..++|.|-+.+.|++-++
T Consensus      1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred             HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence            4444444333222222    77788888888888888888888877777764 566678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchHHHhh
Q 002638          263 RKAAADALSALALHSSNLVIDG  284 (898)
Q Consensus       263 RKaA~EaL~sLA~avge~L~Py  284 (898)
                      -..+.+.+-.+=..+|+.|..|
T Consensus      1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred             HHHHHHHHHHHHHHhchhhhhc
Confidence            8888888888888888877665

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=90.81  E-value=4.3  Score=38.85  Aligned_cols=72  Identities=17%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--CHhHHHHHHHHHHHH
Q 002638          116 THVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKM  192 (898)
Q Consensus       116 PhLpkIL~~IlrrLk-DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--nk~VQegAasALAki  192 (898)
                      .+++.|+|++.++|+ -..+..|-+|.-.++.|+...   ..      -+.++..|++++...  ....+.-+..||..+
T Consensus         2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L------~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l   72 (121)
T PF12397_consen    2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PL------SDEVLNALMESILKNWTQETVQRQALICLIVL   72 (121)
T ss_pred             cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CC------cHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            478999999999999 778899999999999999999   22      456777888887322  222246799999999


Q ss_pred             HHhc
Q 002638          193 VECA  196 (898)
Q Consensus       193 IE~a  196 (898)
                      ++.-
T Consensus        73 ~q~q   76 (121)
T PF12397_consen   73 CQSQ   76 (121)
T ss_pred             HHcc
Confidence            9754

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=90.65  E-value=2.6  Score=53.05  Aligned_cols=126  Identities=13%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCCh
Q 002638           57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS  134 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs  134 (898)
                      .+..+.-.|.++...  .+. .-.+|+.|...+ -+....+|.--+.+++-+|..|--.+--|    +|.|-.+|+||++
T Consensus       947 vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLCDPSV 1020 (1529)
T ss_pred             HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhcCchH
Confidence            555666666665542  222 222455544333 23456788889999999888765544444    5677889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638          135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~  195 (898)
                      .||..+.-.|++|...-+-.       .-..++-..+-+|.+.++.+-.-|=-||+.++..
T Consensus      1021 iVRrqt~ilL~rLLq~~~vK-------w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIVK-------WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             HHHHHHHHHHHHHHhhhhhh-------cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            99999988888776654321       0112333344455577888888888899999875

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=90.59  E-value=43  Score=39.66  Aligned_cols=167  Identities=11%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-------------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 002638           40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-------------QESLPMLLNCLYESSNDPKPAVKKESVRLLALV  106 (898)
Q Consensus        40 eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~-------------pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~I  106 (898)
                      ....-++.+|.+.+..||.+..+.-++.+.+..+             ++.+.+|+..|    +.+++.+-..+..+|..+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL----~~~d~~i~~~a~~iLt~l  128 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL----NRQDQFIVHMSFSILAKL  128 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH----cCCchhHHHHHHHHHHHH
Confidence            4455567788888889999999999998887532             23345555533    356778888888888777


Q ss_pred             HHHhchh-chhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHH-hcccccCCchhHHhhHHHHHHHHhc--CCHhH
Q 002638          107 CELHSEL-TSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLY-LNGKEENNGTVVGLFVKPLFEAMME--QNKGV  181 (898)
Q Consensus       107 AEg~gd~-I~PhLpkIL~~IlrrLkDpD-s~VR~Ac~~tLG~LA~~l-ik~~~e~~~~~~~~lL~pL~eaL~e--qnk~V  181 (898)
                      +...... -...+++++..+...|+.++ .....+|..++..|.+.= .+..+-     -...+++|+..|..  .+...
T Consensus       129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~-----~~~~v~~L~~~L~~~~~~~Ql  203 (429)
T cd00256         129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV-----LADGVPTLVKLLSNATLGFQL  203 (429)
T ss_pred             HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH-----HccCHHHHHHHHhhccccHHH
Confidence            6533333 23467778888888887654 566677777776653211 011110     01256777777742  25567


Q ss_pred             HHHHHHHHHHHHHhcCCCCchhH--HHHHHHHHHHhcC
Q 002638          182 QSGAAMCMAKMVECASDPPVVAF--QKLCARICKLLSN  217 (898)
Q Consensus       182 QegAasALAkiIE~a~d~~~~yL--~~LlPRLlkLLks  217 (898)
                      |--++.|+=-+--+..  ..+.+  ..++|.|+.+++.
T Consensus       204 ~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~  239 (429)
T cd00256         204 QYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKE  239 (429)
T ss_pred             HHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHh
Confidence            7778888654432111  11111  2477777777764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=90.40  E-value=15  Score=44.33  Aligned_cols=183  Identities=11%  Similarity=0.154  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCCh-hhHHHHHHHHHH---HHHHhchh---
Q 002638           41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKP-AVKKESVRLLAL---VCELHSEL---  113 (898)
Q Consensus        41 LK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~-~vRKeAIlLLG~---IAEg~gd~---  113 (898)
                      +-++|..++.. +|..-++-|++.|+   .  ++ .|..+|+++...+.+... .+-...+.+|-+   ++....++   
T Consensus       208 Yy~~It~a~~g-~~~~~r~eAL~sL~---T--Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i  280 (576)
T KOG2549|consen  208 YYKEITEACTG-SDEPLRQEALQSLE---T--DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI  280 (576)
T ss_pred             HHHHHHHHHhc-CCHHHHHHHHHhhc---c--Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence            34455555544 45556666665554   4  22 455566665555422111 101123333333   33333332   


Q ss_pred             -chhhHHHHHHHHHHhhcCC----------ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--CHh
Q 002638          114 -TSTHVTKIISHIVKRLKDS----------DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKG  180 (898)
Q Consensus       114 -I~PhLpkIL~~IlrrLkDp----------Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--nk~  180 (898)
                       +.|||..+||.|+.++--.          .=.+|+-++..++.++..+...    ....-+-+..-|..++.++  ...
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~----y~~L~~Rit~tl~k~l~D~~~~~s  356 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL----YNNLQPRITRTLSKALLDNKKPLS  356 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHhcCCCCCch
Confidence             6899999999888875432          2358999999888888877321    1123445666666666555  456


Q ss_pred             HHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHhcCC----------chhhHHHHHHHHHHHH
Q 002638          181 VQSGAAMCMAKMVECA-SDPPVVAFQKLCARICKLLSNQ----------NFMAKASLLPVVGSLS  234 (898)
Q Consensus       181 VQegAasALAkiIE~a-~d~~~~yL~~LlPRLlkLLks~----------~~kaK~alL~aIgSLA  234 (898)
                      ...||.-+|..+.-.. ...+.+-|+...-++...|...          .-++..+++.|...++
T Consensus       357 t~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii  421 (576)
T KOG2549|consen  357 THYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPII  421 (576)
T ss_pred             hhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHH
Confidence            7789999999888643 4444455555555555544332          1234446666666653

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.28  E-value=62  Score=43.09  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             HHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHhcCCchhh
Q 002638          144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAFQKLCARICKLLSNQNFMA  222 (898)
Q Consensus       144 LG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~yL~~LlPRLlkLLks~~~ka  222 (898)
                      +..|+..++.+.    +....++|.-||.-|....+..-.+|..--..+++.+.+-+. .+-++|...++..-... .-.
T Consensus       164 ~~~i~~~li~e~----d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~-~~~  238 (1266)
T KOG1525|consen  164 MLDIAIMLITEE----DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQ-SSL  238 (1266)
T ss_pred             HHHHHHHHHHhh----ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccc-cch
Confidence            555555554431    345677888899988777666665555555555555433222 23334444444332210 001


Q ss_pred             HHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChh
Q 002638          223 KASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP  302 (898)
Q Consensus       223 K~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKp  302 (898)
                      +.-..+.|--+-   -..+.-+-.++|.|..-|..++-..|+.|...+|.|...-+..+..-.+++-..+...-.|+..+
T Consensus       239 ~~~~he~i~~L~---~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~  315 (1266)
T KOG1525|consen  239 KIKYHELILELW---RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE  315 (1266)
T ss_pred             hhHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence            111222222221   13345566788888888999999999999999999988888555555577888888888899998


Q ss_pred             hHHH
Q 002638          303 VRDS  306 (898)
Q Consensus       303 VRD~  306 (898)
                      ||=.
T Consensus       316 vR~~  319 (1266)
T KOG1525|consen  316 VRME  319 (1266)
T ss_pred             hhhh
Confidence            8854

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=89.95  E-value=31  Score=37.08  Aligned_cols=189  Identities=12%  Similarity=0.069  Sum_probs=105.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638           89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (898)
Q Consensus        89 ~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~  168 (898)
                      ...++......+.+|..+|. |  .- +..+.++..|......+...++..+...+..+-..=   .     ..+ .+|+
T Consensus        11 ~~~~~~~~~~~L~~L~~l~~-~--~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---~-----r~f-~~L~   77 (234)
T PF12530_consen   11 KISDPELQLPLLEALPSLAC-H--KN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---D-----RHF-PFLQ   77 (234)
T ss_pred             CCCChHHHHHHHHHHHHHhc-c--Cc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC---c-----hHH-HHHH
Confidence            34456556666666655554 2  22 556667777777777777766544444333333222   1     223 3555


Q ss_pred             HHHHHH----------hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcc
Q 002638          169 PLFEAM----------MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVG  237 (898)
Q Consensus       169 pL~eaL----------~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLL-ks~~~kaK~alL~aIgSLA~vG  237 (898)
                      +++..+          .+.....+.+.+.++..+|..-++    +-..+++.+..+| ++...-+++.++++|.++-...
T Consensus        78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~  153 (234)
T PF12530_consen   78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE  153 (234)
T ss_pred             HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            555541          123556778889999999987655    5567888889999 6777778888999999886422


Q ss_pred             -ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcC
Q 002638          238 -AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFD  298 (898)
Q Consensus       238 -a~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~LE~~RfD  298 (898)
                       -.+....    ..|...|.. ....+=+..|+.+.-+....-  +...-+...++..+=.....
T Consensus       154 vvd~~s~w----~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~  214 (234)
T PF12530_consen  154 VVDFYSAW----KVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSS  214 (234)
T ss_pred             hccHHHHH----HHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccc
Confidence             1222222    333333333 233343333333332222221  34445567777766433333

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=89.89  E-value=0.39  Score=38.48  Aligned_cols=41  Identities=29%  Similarity=0.447  Sum_probs=30.9

Q ss_pred             HHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002638          102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSI  144 (898)
Q Consensus       102 LLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tL  144 (898)
                      +|+.+++.-+..+.  .+.|+..|.++|.|+++.||.||.+.|
T Consensus         2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            35555555544443  358899999999999999999998764

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=89.60  E-value=48  Score=38.73  Aligned_cols=218  Identities=11%  Similarity=0.083  Sum_probs=135.0

Q ss_pred             CCChhhHHHHHHHHHHHHHHhch-hchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638           90 DPKPAVKKESVRLLALVCELHSE-LTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV  167 (898)
Q Consensus        90 s~k~~vRKeAIlLLG~IAEg~gd-~I~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL  167 (898)
                      ++.|++-.-+..+|-...+.... ....|+. +.+-.++..|.-+|+.-|+....++.++-......    -.-....+-
T Consensus       101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~----r~~Ir~~i~  176 (409)
T PF01603_consen  101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL----RSFIRKSIN  176 (409)
T ss_dssp             -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT----HHHHHHHHH
T ss_pred             ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Confidence            44577767766666666655442 2233444 77888999999999999999999999987776332    011222233


Q ss_pred             HHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhccccCcccH
Q 002638          168 KPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLSNQNFMA-KASLLPVVGSLSQVGAIAPQSL  244 (898)
Q Consensus       168 ~pL~eaL~eq-nk~VQegAasALAkiIE~a~d~~-~~yL~~LlPRLlkLLks~~~ka-K~alL~aIgSLA~vGa~~~pyl  244 (898)
                      .-|.+.+.+. ....-.-...-|..++.+-..+. .++...+.--|+++.+.+++.. ...+..|+..++.   --+...
T Consensus       177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~  253 (409)
T PF01603_consen  177 NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLA  253 (409)
T ss_dssp             HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGH
T ss_pred             HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhH
Confidence            3344444333 33333335555666666533333 3466667777778888876553 4567777777763   334556


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002638          245 EPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI  317 (898)
Q Consensus       245 d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~L  317 (898)
                      ..++..|+..---.+..---.-++-|..|....+ +.|......+.+.+-.|-.-..-   .+|.+||.+|..-
T Consensus       254 ~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~---qVAErAl~~w~n~  324 (409)
T PF01603_consen  254 EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHF---QVAERALYFWNNE  324 (409)
T ss_dssp             HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSH---HHHHHHHGGGGSH
T ss_pred             HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHCCH
Confidence            6777777777555555555566677777887777 77888888888888777766666   5788899999754

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.56  E-value=30  Score=43.74  Aligned_cols=222  Identities=16%  Similarity=0.134  Sum_probs=124.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH-HHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTLS--------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIIS  123 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~--------pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp-kIL~  123 (898)
                      +|.-.+-.|+.+|=+++.-..        -+.|.+.|-.|+..  ..+.-.--.|+++|..+++.++..+.-.+. ..+|
T Consensus       180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIP  257 (1051)
T KOG0168|consen  180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIP  257 (1051)
T ss_pred             CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhhccchhheeecccchH
Confidence            466566677777766554222        22233334444322  234566778999999999999987543222 3678


Q ss_pred             HHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638          124 HIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (898)
Q Consensus       124 ~IlrrLkDpD-s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~  202 (898)
                      .++.+|.--+ --|-..|..++--|++.=-+.....+      -|-..+..|.-=.-.+|-.|...-+.+|..++...-.
T Consensus       258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG------~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~  331 (1051)
T KOG0168|consen  258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAG------ALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH  331 (1051)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence            8888876654 35666777777666654322111000      1111222222225678888888888999888666667


Q ss_pred             hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH-----HHHHHHHhhCCC----CHHHHHHHHHHHHHH
Q 002638          203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP-----LLQSIHECLGST----DWATRKAAADALSAL  273 (898)
Q Consensus       203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~-----lLp~L~e~Lsdd----DW~vRKaA~EaL~sL  273 (898)
                      |+-..+|-|..+|.+.+-|.-....-|+..++..-+..+.-++.     ++.-+.+.|.-.    .-.+--.++.+|..+
T Consensus       332 ~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m  411 (1051)
T KOG0168|consen  332 FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM  411 (1051)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence            88888999999999877765555555555555311111222222     222233333221    122344556666666


Q ss_pred             HHhcchHHH
Q 002638          274 ALHSSNLVI  282 (898)
Q Consensus       274 A~avge~L~  282 (898)
                      +...+..|.
T Consensus       412 sS~~pl~~~  420 (1051)
T KOG0168|consen  412 SSGSPLLFR  420 (1051)
T ss_pred             ccCChHHHH
Confidence            666554433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=89.54  E-value=21  Score=40.90  Aligned_cols=178  Identities=12%  Similarity=0.140  Sum_probs=105.0

Q ss_pred             hhhHHH---HHHHHHHHHHH-hchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh----HH
Q 002638           93 PAVKKE---SVRLLALVCEL-HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV----VG  164 (898)
Q Consensus        93 ~~vRKe---AIlLLG~IAEg-~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~----~~  164 (898)
                      -..|+-   |+.+|..+-.. ++-.+.   |.++|-+.++|..+|..|..-+|..||++.+.+ +.  ....++    -.
T Consensus        54 enhrekttlcVscLERLfkakegahla---pnlmpdLQrGLiaddasVKiLackqigcilEdc-Dt--naVseillvvNa  127 (524)
T KOG4413|consen   54 ENHREKTTLCVSCLERLFKAKEGAHLA---PNLMPDLQRGLIADDASVKILACKQIGCILEDC-DT--NAVSEILLVVNA  127 (524)
T ss_pred             ccccchhhhHHHHHHHHHhhccchhhc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC-ch--hhHHHHHHHhhh
Confidence            345666   55555544332 222344   556999999999999999999999999999988 21  111111    34


Q ss_pred             hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh---cCCC-CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002638          165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC---ASDP-PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA  240 (898)
Q Consensus       165 ~lL~pL~eaL~eqnk~VQegAasALAkiIE~---a~d~-~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~  240 (898)
                      .+++.++.+++..+-.|-.+|.-.+..+--.   +.-. ..+.++.+--+-+.+--  +.-+|.-.|++|--++.+....
T Consensus       128 eilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifSiSpes  205 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFSISPES  205 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHH
Confidence            6789999999888888888887777665432   1100 01223332222111111  1223444566665555443221


Q ss_pred             cccHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002638          241 PQSLE--PLLQSIHECLGS-TDWATRKAAADALSALALHSS  278 (898)
Q Consensus       241 ~pyld--~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg  278 (898)
                      ..|..  .++.-|..-|+. +|.-+|...+|....++....
T Consensus       206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence            12221  244444444555 788889999999998887655

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.52  E-value=4  Score=50.30  Aligned_cols=163  Identities=15%  Similarity=0.124  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGK  155 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilr-rLkDpDs~VR~Ac~~tLG~LA~~lik~~  155 (898)
                      ..+|+.-+.   .+.+|..|..++..++..=-|-+..      +++..++. ...|++--||.||+-+||-+.-   +  
T Consensus       520 Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl~---~--  585 (929)
T KOG2062|consen  520 ADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLF---R--  585 (929)
T ss_pred             hHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeEe---c--
Confidence            444444443   4668899999888776554444432      11222222 3679999999999998884321   2  


Q ss_pred             ccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH-
Q 002638          156 EENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL-  233 (898)
Q Consensus       156 ~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL-  233 (898)
                             -+..++..++.|.+ .|++|..|||+||.-+|-+.+..  +    -+.-|-++.+++.--+|..++-+++-| 
T Consensus       586 -------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e----Ai~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  586 -------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E----AINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             -------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence                   13456667777755 59999999999999999865432  2    223334444666444555444444433 


Q ss_pred             HhccccCcccHHHHHHHHHHhhCC--CCHHHHHHH
Q 002638          234 SQVGAIAPQSLEPLLQSIHECLGS--TDWATRKAA  266 (898)
Q Consensus       234 A~vGa~~~pyld~lLp~L~e~Lsd--dDW~vRKaA  266 (898)
                      ++-....-|-+..+...+.+...+  +|-.++..|
T Consensus       653 ~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GA  687 (929)
T KOG2062|consen  653 IQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGA  687 (929)
T ss_pred             HhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            444445556677777777776665  444444333

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=89.50  E-value=1.9  Score=44.64  Aligned_cols=98  Identities=13%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             hchhhHHHHHHHHHHhhcCCC------------------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638          113 LTSTHVTKIISHIVKRLKDSD------------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM  174 (898)
Q Consensus       113 ~I~PhLpkIL~~IlrrLkDpD------------------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL  174 (898)
                      .+.|||+.|+|.|...+.=..                  -.+|.+|-+++-++...+....      .+..|+..+...|
T Consensus         2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL   75 (169)
T PF08623_consen    2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGL   75 (169)
T ss_dssp             GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhc
Confidence            578999999999998765432                  4789999999999988763321      2667888888888


Q ss_pred             hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002638          175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN  217 (898)
Q Consensus       175 ~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks  217 (898)
                      .| ...++.-++.-|.+++...+......|+.|++.|-+.|+.
T Consensus        76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~  117 (169)
T PF08623_consen   76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK  117 (169)
T ss_dssp             SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred             CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence            88 8899999999999999988776667788899999988853

; PDB: 4A0C_A 1U6G_C.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=89.30  E-value=2.9  Score=40.17  Aligned_cols=88  Identities=15%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638          204 FQKLCARICKLLSNQN----FMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (898)
Q Consensus       204 L~~LlPRLlkLLks~~----~kaK~alL~aIgSLA~v-Ga~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg  278 (898)
                      +=-|+.++-..+.+.+    +.-|..++.+|+-++.+ |.....+..++|.+|...|..+  .+|..|++|...+...+.
T Consensus         9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~   86 (107)
T smart00802        9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLK   86 (107)
T ss_pred             HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCC
Confidence            3346777777777654    33466788899998874 3666677788888898888764  599999999999999999


Q ss_pred             -hHHHhhHHHHHHHHH
Q 002638          279 -NLVIDGATSTLTVLE  293 (898)
Q Consensus       279 -e~L~Py~~~~I~~LE  293 (898)
                       +.+.|.+++++-++.
T Consensus        87 ~~~l~~ll~~~~~~i~  102 (107)
T smart00802       87 EEELGPLLDQIFAAIL  102 (107)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             778888888877654

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.29  E-value=24  Score=44.57  Aligned_cols=171  Identities=15%  Similarity=0.152  Sum_probs=109.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCC--------CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh--hHHHHH
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQE--------SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST--HVTKII  122 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~pe--------~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P--hLpkIL  122 (898)
                      ..-|..-.|+.+|--+.+-||+.        .+|.|+.-|+. +  +.--+=+.++.+|..|.+.|+..+..  .|.-++
T Consensus       224 ~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-I--eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L  300 (1051)
T KOG0168|consen  224 HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-I--EYIDVAEQSLQALEKISRRHPKAILQAGALSAVL  300 (1051)
T ss_pred             ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-h--hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH
Confidence            56788888998888888877632        36666655542 1  23346788999999999999987542  333333


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC--
Q 002638          123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP--  200 (898)
Q Consensus       123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~--  200 (898)
                      .|+    .=-...++..|.-+++..+..+..+.+    .++-+.||.|...|..+++.+-+.+|.||.+++|..-..+  
T Consensus       301 syl----DFFSi~aQR~AlaiaaN~Cksi~sd~f----~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k  372 (1051)
T KOG0168|consen  301 SYL----DFFSIHAQRVALAIAANCCKSIRSDEF----HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK  372 (1051)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHhcCCCccc----hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence            322    112235566666666666666633322    5677888888888888999999999999999999863221  


Q ss_pred             -ch-hHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHH
Q 002638          201 -VV-AFQKLCARICKLLSNQ----NFMAKASLLPVVGSLS  234 (898)
Q Consensus       201 -~~-yL~~LlPRLlkLLks~----~~kaK~alL~aIgSLA  234 (898)
                       .. +-+.|+.+...+|.-.    +...+..++..+..+.
T Consensus       373 Ldql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~ms  412 (1051)
T KOG0168|consen  373 LDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMS  412 (1051)
T ss_pred             HHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHc
Confidence             12 2234667777777533    2233445455554443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.27  E-value=31  Score=46.95  Aligned_cols=203  Identities=16%  Similarity=0.160  Sum_probs=128.9

Q ss_pred             HHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHHhcccccCCc
Q 002638           82 NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM-KEACRDSIGSLSKLYLNGKEENNG  160 (898)
Q Consensus        82 s~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V-R~Ac~~tLG~LA~~lik~~~e~~~  160 (898)
                      .++.......+|..|=.+..+++.++-..++  .|++..+..++++.|++.+..| |---.-++|.|-++.   +.-..+
T Consensus       879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv---gs~~s~  953 (2067)
T KOG1822|consen  879 TLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV---GSIGSG  953 (2067)
T ss_pred             HHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc---cCCCCc
Confidence            3334445678899999988888888876665  4677888999999999976544 666677788888877   322234


Q ss_pred             hhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHH--HHHHHHH-----
Q 002638          161 TVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKA--SLLPVVG-----  231 (898)
Q Consensus       161 ~~~~~lL~pL~eaL~eq-nk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks-~~~kaK~--alL~aIg-----  231 (898)
                      ++...-+..|+....|. .|.||.-+..||+-+++........|....+--+.++|-+ +...+..  ..=.|.+     
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            55555555666666554 6699999999999999987666556666555555555543 4333221  1111111     


Q ss_pred             -HHH-hccccCcccH---------HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-----hHHHhhHHHHH
Q 002638          232 -SLS-QVGAIAPQSL---------EPLLQSIHECLGSTDWATRKAAADALSALALHSS-----NLVIDGATSTL  289 (898)
Q Consensus       232 -SLA-~vGa~~~pyl---------d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-----e~L~Py~~~~I  289 (898)
                       .++ .+|....+..         ..++-...=.++++|.-.-.+|+.||-.+...-+     +.|.+-+..+|
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence             333 2342222222         2222222223677788888999999999988877     44555444433

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=89.13  E-value=9.8  Score=52.84  Aligned_cols=263  Identities=12%  Similarity=0.115  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC---CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhh
Q 002638           41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTL---SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH  117 (898)
Q Consensus        41 LK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L---~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~Ph  117 (898)
                      +.+.+...+.-. |-++..+|...|-.++.-.   .++.+..-..++.+-..+..-..|-+|+.+++..+.-.+....|+
T Consensus        94 ~~n~l~~l~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~  172 (2341)
T KOG0891|consen   94 LANYLRYLLPSN-DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPY  172 (2341)
T ss_pred             HHHHHHHhhccC-ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHH
Confidence            333333333333 6667777777666666432   122233333444333333334466789999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHH-HH-----HHHHHHH
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ-SG-----AAMCMAK  191 (898)
Q Consensus       118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQ-eg-----AasALAk  191 (898)
                      +++++..|...+.|+++.+|..||.++......+.+.+       ....+..+..+...-+.... .+     +...+..
T Consensus       173 ~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~-------~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e  245 (2341)
T KOG0891|consen  173 VNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE-------AKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNE  245 (2341)
T ss_pred             HHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc-------chhhhHHHHHHHHhccccccchHHHhhhHHHHHHH
Confidence            99999999999999999999999999998887774322       11122233333322211111 11     1111111


Q ss_pred             HHHhcCCCCchhHHHHHHHHH--HHhcCCchhhHHHHHHHHHHHHhcc-ccC-cccHHHHHHHHHHhhCCCCHHHHHHHH
Q 002638          192 MVECASDPPVVAFQKLCARIC--KLLSNQNFMAKASLLPVVGSLSQVG-AIA-PQSLEPLLQSIHECLGSTDWATRKAAA  267 (898)
Q Consensus       192 iIE~a~d~~~~yL~~LlPRLl--kLLks~~~kaK~alL~aIgSLA~vG-a~~-~pyld~lLp~L~e~LsddDW~vRKaA~  267 (898)
                      +..... .....++..+-+..  +.+++...  ...+..-+.-++... ..| ..|+...|..++.++...+    -.+.
T Consensus       246 ~~~~~~-~~~~~~~~~~~~~~~~~~lk~~~i--~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~~~  318 (2341)
T KOG0891|consen  246 LLRISD-PFLEKYDSTCVRQAKGKLLKSIVI--RMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK----TRAF  318 (2341)
T ss_pred             HHHHHH-HHHHhhHHHHHHHHHHHHhccccH--HHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc----hhHH
Confidence            111111 11111222222222  22232222  212222222232211 111 3677777777777666433    6788


Q ss_pred             HHHHHHHHhcchHHHhhHHHHHHHHH-hhhcC-CChhhHHHHHHHHHHHHHhh
Q 002638          268 DALSALALHSSNLVIDGATSTLTVLE-ACRFD-KIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       268 EaL~sLA~avge~L~Py~~~~I~~LE-~~RfD-KvKpVRD~A~eALelWK~La  318 (898)
                      ..|+.||.+++..+.||...+...+. ..+.+ ....-|+.....|..|...+
T Consensus       319 ~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a  371 (2341)
T KOG0891|consen  319 VSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASA  371 (2341)
T ss_pred             HHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhc
Confidence            89999999999999999877555443 22211 11113356666777766655

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.10  E-value=28  Score=42.57  Aligned_cols=143  Identities=10%  Similarity=0.143  Sum_probs=92.3

Q ss_pred             hhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH
Q 002638           85 YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG  164 (898)
Q Consensus        85 ~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~  164 (898)
                      +...+..-..+||.+-.++...   ..+.....+-+++..|+..=+.|.  +-+-...-+.++..+.....+ .+.+.+.
T Consensus        17 f~k~Q~s~aGhrk~~a~l~~~~---t~~~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~dp-eg~~~V~   90 (885)
T COG5218          17 FNKIQQSSAGHRKSLAELMEML---TAHEFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDDP-EGEELVA   90 (885)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHH---HHHhhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCCh-hhhHHHH
Confidence            3444445677899888887766   223444455566666666655443  333344455666665533222 2346666


Q ss_pred             hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002638          165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL  233 (898)
Q Consensus       165 ~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL  233 (898)
                      .++.-++..+..++++|.--.|.-|+.+.++.+..+....+.|+.+|.+-+=+.-.-+|-.++-|+.-+
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~  159 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY  159 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            677777777778999999999999999999988776667777777777665544444555556666655

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.07  E-value=39  Score=42.06  Aligned_cols=226  Identities=17%  Similarity=0.182  Sum_probs=134.6

Q ss_pred             HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002638           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG  160 (898)
Q Consensus        81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~  160 (898)
                      ++-|+-.. +....+|+.+-++|=.+-+..+|.+.|-  .-..-|+..|.|.+=.|--|+...|-.|+.+.-+..   . 
T Consensus       151 I~KlLvS~-~~~~~vkqkaALclL~L~r~spDl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y---k-  223 (938)
T KOG1077|consen  151 IPKLLVSG-SSMDYVKQKAALCLLRLFRKSPDLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY---K-  223 (938)
T ss_pred             hHHHHhCC-cchHHHHHHHHHHHHHHHhcCccccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH---h-
Confidence            33444333 3346677777777767888888887651  124456667888887776677666666666551110   0 


Q ss_pred             hhHHhhHHHHHHHHhc-------------CCHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhc----CCchh-
Q 002638          161 TVVGLFVKPLFEAMME-------------QNKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLS----NQNFM-  221 (898)
Q Consensus       161 ~~~~~lL~pL~eaL~e-------------qnk~VQegAasALAkiIE~a~d~~-~~yL~~LlPRLlkLLk----s~~~k-  221 (898)
                      .-++..+..|......             ++|=.|.-.+..|... .-..|.. ..-|..++.+++...+    +.+.+ 
T Consensus       224 ~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~  302 (938)
T KOG1077|consen  224 TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQH  302 (938)
T ss_pred             hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHh
Confidence            0112222222221111             3566666666655544 1111111 1224444444444443    22222 


Q ss_pred             --hHHH-HHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhh
Q 002638          222 --AKAS-LLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACR  296 (898)
Q Consensus       222 --aK~a-lL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~LE~~R  296 (898)
                        ++.+ +.++|+-++.. +.-+..+...+..|.++|++....+|=-|+|.+..|+....  +.+.-|.+.+|..|.   
T Consensus       303 ~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk---  378 (938)
T KOG1077|consen  303 SNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK---  378 (938)
T ss_pred             hhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc---
Confidence              4443 44555544322 34566777888899999999999999999999999999876  778877777777664   


Q ss_pred             cCCChhhHHHHHHHHHHHHHhhcCC
Q 002638          297 FDKIKPVRDSMNEALQLWKKIAGKV  321 (898)
Q Consensus       297 fDKvKpVRD~A~eALelWK~La~~~  321 (898)
                      .+++-.||.   .|+++.=.+++++
T Consensus       379 terDvSirr---ravDLLY~mcD~~  400 (938)
T KOG1077|consen  379 TERDVSIRR---RAVDLLYAMCDVS  400 (938)
T ss_pred             cccchHHHH---HHHHHHHHHhchh
Confidence            466766665   5888888899773

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=88.99  E-value=37  Score=39.60  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=69.8

Q ss_pred             CCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002638          177 QNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL  255 (898)
Q Consensus       177 qnk~VQegAasALAkiIE~a~d-~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L  255 (898)
                      .|..-|..-..=|..+++..+. ....+...|+.++.+++.++|+++=..++.....-.-+ ..+..+-..++|.++..|
T Consensus       267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~~~~~~i~p~i~~~L  345 (409)
T PF01603_consen  267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLISQNSRVILPIIFPAL  345 (409)
T ss_dssp             S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHHCTHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHHhChHHHHHHHHHHH
Confidence            4666666666666777765432 23456778999999999999999766555543321100 123455667777777665


Q ss_pred             CC---C--CHHHHHHHHHHHHHHHHhcchHHHh
Q 002638          256 GS---T--DWATRKAAADALSALALHSSNLVID  283 (898)
Q Consensus       256 sd---d--DW~vRKaA~EaL~sLA~avge~L~P  283 (898)
                      ..   .  +..+|..|+.+|..+...-++.|..
T Consensus       346 ~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  346 YRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             SSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            43   2  3459999999999999988886664

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=88.94  E-value=1.1e+02  Score=42.21  Aligned_cols=256  Identities=13%  Similarity=0.086  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHhcC-CCCC----------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHH
Q 002638           57 THQIAIEDLEKTIQTL-SQES----------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHI  125 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L-~pe~----------Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~I  125 (898)
                      .+-.|+..|.+++..+ .-+.          |.+|...+.   .+....+|+-.+.++..+...+++.+..=+.-|+..+
T Consensus      1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~---~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076       1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR---KSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence            4445555555766543 2211          444443333   3456789999999999999999999998999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHH----HHhc-C--
Q 002638          126 VKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKM----VECA-S--  197 (898)
Q Consensus       126 lrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAki----IE~a-~--  197 (898)
                      -....|....+=..+-+++..+....+..........+..++..|.+-... .+.++-..|..-|..+    .+.. .  
T Consensus      1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076       1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence            999999988777788888887776654311100012344444444333321 1222222333333322    1110 0  


Q ss_pred             --------------------CC-----C----chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcc-----
Q 002638          198 --------------------DP-----P----VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQ-----  242 (898)
Q Consensus       198 --------------------d~-----~----~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vGa~~~p-----  242 (898)
                                          ..     .    ..+-=+|+-.|..+..++...+|..+|..+-.+. .-|..|.+     
T Consensus      1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076       1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred             ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence                                00     0    0122256677777777777888888777765554 34555543     


Q ss_pred             cHHHHHHHHHHhhCC------------------------CCHH--HHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhh
Q 002638          243 SLEPLLQSIHECLGS------------------------TDWA--TRKAAADALSALALHSSNLVIDGATSTLTVLEACR  296 (898)
Q Consensus       243 yld~lLp~L~e~Lsd------------------------dDW~--vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~R  296 (898)
                      .+..+|-+|++.+..                        ..|-  +=..|+..|..|-...=+.+.+.+++++..|..|-
T Consensus      1390 if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci 1469 (1780)
T PLN03076       1390 VFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFI 1469 (1780)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666655421                        1252  33333333333333333666677888899999998


Q ss_pred             cCCChhhHHHHHHHHHHHHHhh
Q 002638          297 FDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       297 fDKvKpVRD~A~eALelWK~La  318 (898)
                      ....+.   .|.-.+...+.+-
T Consensus      1470 ~q~n~~---la~ig~~~l~~li 1488 (1780)
T PLN03076       1470 KRPHQS---LAGIGIAAFVRLM 1488 (1780)
T ss_pred             cCchHH---HHHHHHHHHHHHH
Confidence            887773   4444444444444

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=88.86  E-value=13  Score=40.77  Aligned_cols=147  Identities=16%  Similarity=0.153  Sum_probs=105.3

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH
Q 002638          171 FEAMMEQNKGVQSGAAMCMAKMVECASD--PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL  248 (898)
Q Consensus       171 ~eaL~eqnk~VQegAasALAkiIE~a~d--~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lL  248 (898)
                      =+.|.+.+..+.+.|..+|+.+++..+.  +...-++.|+.-++.-|.+... +..+ +.++.+++............++
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~~~~~i~   82 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPESAVKIL   82 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChhhHHHHH
Confidence            3456677888999999999999998753  2234566677777777754333 3444 7888888754444455566777


Q ss_pred             HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH-HHHhhhcCCChhhHHHHHHHHHHHHHhhcCCC
Q 002638          249 QSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGKVD  322 (898)
Q Consensus       249 p~L~e~Lsd--dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~-~LE~~RfDKvKpVRD~A~eALelWK~La~~~d  322 (898)
                      ..+++....  --...|..+.+.|..+.....+.+...-...|. +++.+...|++   .-...++++++.+...++
T Consensus        83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP---RnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP---RNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHhcc
Confidence            777765433  346689999999999999887777655555555 56677788999   677789999999987765

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.42  E-value=11  Score=53.47  Aligned_cols=274  Identities=15%  Similarity=0.114  Sum_probs=160.7

Q ss_pred             HhHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHhc----CC-CCC------HHHHHHHHhhhcCCCChhhHHHHHHH
Q 002638           36 LAMVEMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQT----LS-QES------LPMLLNCLYESSNDPKPAVKKESVRL  102 (898)
Q Consensus        36 ~~~~eLK~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~----L~-pe~------Lp~fLs~L~es~~s~k~~vRKeAIlL  102 (898)
                      .-+++-+-.+=.+...+  .+-.....+...|..+-..    |+ ++.      +..+++-+..--.++.|+.|..++..
T Consensus       977 ~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~g 1056 (3550)
T KOG0889|consen  977 KKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNG 1056 (3550)
T ss_pred             ccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCce
Confidence            33344343333333333  4566888888888777653    22 222      33444444444467889999999999


Q ss_pred             HHHHHHHhchh-chhhHHHHHHHHHHhhcCCChHHHH----HHHHHHHHHHHHHhcc-ccc-CCchhHHhhHHHHHHHHh
Q 002638          103 LALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKE----ACRDSIGSLSKLYLNG-KEE-NNGTVVGLFVKPLFEAMM  175 (898)
Q Consensus       103 LG~IAEg~gd~-I~PhLpkIL~~IlrrLkDpDs~VR~----Ac~~tLG~LA~~lik~-~~e-~~~~~~~~lL~pL~eaL~  175 (898)
                      ++.+.+.-... +..+...++..+.-.|+|-...+-.    .|-+.+-.+.+.+... ..+ ........++.++.--|.
T Consensus      1057 I~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 1136 (3550)
T KOG0889|consen 1057 IKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF 1136 (3550)
T ss_pred             eeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence            99998887743 6788889999999999997654433    3444444444443321 111 111446778888888888


Q ss_pred             cCCHhHHHHHHHHHHHHHHhcCCCCc----hhHHHH-HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHH-
Q 002638          176 EQNKGVQSGAAMCMAKMVECASDPPV----VAFQKL-CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ-  249 (898)
Q Consensus       176 eqnk~VQegAasALAkiIE~a~d~~~----~yL~~L-lPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp-  249 (898)
                      .+|..|-+.+..+|..+-|.......    ++-+.| .|.+.+.|.+..+.+.-..++++.=.+..+..+-.+.+.+.- 
T Consensus      1137 npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l 1216 (3550)
T KOG0889|consen 1137 NPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRL 1216 (3550)
T ss_pred             CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHH
Confidence            99999999999999999998743322    222222 344444444444444444555554444444222222222221 


Q ss_pred             --HHHHhhCCC------------------CHHHHHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638          250 --SIHECLGST------------------DWATRKAAADALSALALHSS---NLVIDGATSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       250 --~L~e~Lsdd------------------DW~vRKaA~EaL~sLA~avg---e~L~Py~~~~I~~LE~~RfDKvKpVRD~  306 (898)
                        .+...+..+                  --.+|-++.++|+.-....+   ....+|...+|.++-...+-+-+..-++
T Consensus      1217 ~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~ 1296 (3550)
T KOG0889|consen 1217 KRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEV 1296 (3550)
T ss_pred             HHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHH
Confidence              222222211                  12358888888888766666   4577788888877765555555544454


Q ss_pred             HHH
Q 002638          307 MNE  309 (898)
Q Consensus       307 A~e  309 (898)
                      +.+
T Consensus      1297 ~~~ 1299 (3550)
T KOG0889|consen 1297 ALE 1299 (3550)
T ss_pred             HHH
Confidence            433

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=88.37  E-value=3.6  Score=50.43  Aligned_cols=187  Identities=17%  Similarity=0.128  Sum_probs=118.9

Q ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638          115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE  194 (898)
                      .+|-.+|+|+|++.++-+|-.||-.-..-+-.+..++.++      .+-..+++-+...+.+.|+.+.+-..-|++-++.
T Consensus       325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~------~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~  398 (690)
T KOG1243|consen  325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ------ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP  398 (690)
T ss_pred             cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH------hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence            3477889999999999999999999999888888888543      3345678888888899999988877777766665


Q ss_pred             hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHH
Q 002638          195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS-IHECLGSTDWATRKAAADALSAL  273 (898)
Q Consensus       195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~-L~e~LsddDW~vRKaA~EaL~sL  273 (898)
                      ....-  ..-..|+-.|.++-.+.+..+|.---.|+|-++..-  .+..-..++.. ....+.|+-...|+++...|.+.
T Consensus       399 kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l--~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at  474 (690)
T KOG1243|consen  399 KLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL--AASVRKRVLASAFTRALKDPFVPARKAGVLALAAT  474 (690)
T ss_pred             hhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccccc--chhhhccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence            43221  111234444444334444445543334444432110  00001222222 22357777788899988887655


Q ss_pred             HHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638          274 ALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       274 A~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel  313 (898)
                      -....  ...-..+++..|.-...|..+-||+.|..+++-
T Consensus       475 ~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~  512 (690)
T KOG1243|consen  475 QEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ  512 (690)
T ss_pred             ccccc--hhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence            44443  112346777778888889999999985555443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.02  E-value=12  Score=48.09  Aligned_cols=105  Identities=11%  Similarity=0.101  Sum_probs=78.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhchhc-hhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh
Q 002638           89 NDPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF  166 (898)
Q Consensus        89 ~s~k~~vRKeAIlLLG~IAEg~gd~I-~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l  166 (898)
                      +...+.+|-.|...|+.++.++.-.- .-.-..+|...+..|.| +++.+|+=+|-+||+|=+.+-..-..   ..-...
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~---G~r~~A  643 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS---GRRDNA  643 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc---cccccH
Confidence            34456889999999999999977442 22234567889999999 58999999999999998877321000   011224


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638          167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECA  196 (898)
Q Consensus       167 L~pL~eaL~eqnk~VQegAasALAkiIE~a  196 (898)
                      ...|+..|.|+-+.|..+|.-||..++.+.
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            456777888999999999999999999863

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=87.46  E-value=61  Score=37.31  Aligned_cols=254  Identities=14%  Similarity=0.139  Sum_probs=148.3

Q ss_pred             CChhHHHHHHHHHHHHHhcCC--C------CCHHHHHHHHhhhcCC-------CChhhHHHHHHHHHHHHHHhc--hhc-
Q 002638           53 ADRDTHQIAIEDLEKTIQTLS--Q------ESLPMLLNCLYESSND-------PKPAVKKESVRLLALVCELHS--ELT-  114 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~Ia~~L~--p------e~Lp~fLs~L~es~~s-------~k~~vRKeAIlLLG~IAEg~g--d~I-  114 (898)
                      +||+.+-=|...|..+.+..+  |      +.++.|+.++..-...       .+...-.+|+++||.+.....  ..+ 
T Consensus         5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~   84 (372)
T PF12231_consen    5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS   84 (372)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence            466666666666666555432  1      1256666666544322       356677789999988864221  122 


Q ss_pred             hhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc--CCHhHHHHHHHHHH
Q 002638          115 STHVTKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMA  190 (898)
Q Consensus       115 ~PhLpkIL~~IlrrLkDpDs--~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e--qnk~VQegAasALA  190 (898)
                      ..+...++-+.+..|.++..  .+...+.++|.   .+=+.+..  ........+...+..+.+  +...+..-+..++.
T Consensus        85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q~f~~~~--~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~  159 (372)
T PF12231_consen   85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQKFSPKI--MTSDRVERLLAALHNIKNRFPSKSIISERLNIYK  159 (372)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cCCCCCcc--cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence            33455688888899988763  44444444443   11111110  011122223333333333  57788888999999


Q ss_pred             HHHHhcCCCCch----hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH--------h-ccccC------cccHHHHHHHH
Q 002638          191 KMVECASDPPVV----AFQKLCARICKLLSNQNFMAKASLLPVVGSLS--------Q-VGAIA------PQSLEPLLQSI  251 (898)
Q Consensus       191 kiIE~a~d~~~~----yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA--------~-vGa~~------~pyld~lLp~L  251 (898)
                      ++++..+..+..    .++.|++.++...+  ..+.++..+.....+.        . +...+      ..|++.+...|
T Consensus       160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k--~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L  237 (372)
T PF12231_consen  160 RLLSQFPQQMIKHADIWFPILFPDLLSSAK--DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERL  237 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHH
Confidence            999988766554    35566666653322  3333332222111111        0 00111      14566677777


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHHHHhcchH-H--HhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhc
Q 002638          252 HECLGS-TDWATRKAAADALSALALHSSNL-V--IDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG  319 (898)
Q Consensus       252 ~e~Lsd-dDW~vRKaA~EaL~sLA~avge~-L--~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~  319 (898)
                      .+.+.+ ++   =+.|.++-+.+...+|.. +  -+|....+.+.+.|=...+..+|-   +|+..|+.+-.
T Consensus       238 ~~mi~~~~~---~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~---~A~~aW~~liy  303 (372)
T PF12231_consen  238 KEMIKSKDE---YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI---QAFKAWRRLIY  303 (372)
T ss_pred             HHHHhCcCC---cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHH
Confidence            777777 33   245677877777777732 2  367899999999999999998886   49999999995

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=87.35  E-value=13  Score=46.35  Aligned_cols=118  Identities=17%  Similarity=0.102  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC
Q 002638           99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN  178 (898)
Q Consensus        99 AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn  178 (898)
                      |+.+|.++|+-..-...=+-..|++.+++.|...+..+.-.+...|..|+-+--...    .-.-..++++|...+..++
T Consensus       269 ~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~----~m~~~giV~kL~kLl~s~~  344 (708)
T PF05804_consen  269 AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD----EMAESGIVEKLLKLLPSEN  344 (708)
T ss_pred             HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH----HHHHcCCHHHHHHHhcCCC
Confidence            555666777654432222346678888888887777777777777777764331100    0012237888888888888


Q ss_pred             HhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchh
Q 002638          179 KGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFM  221 (898)
Q Consensus       179 k~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~k  221 (898)
                      ..++..+...|-.+..+..- -...+. .++|+|..+|++++++
T Consensus       345 ~~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~d~~~~  387 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLKDPNFR  387 (708)
T ss_pred             HHHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhCCCchH
Confidence            88888888888877754311 111222 3778888888887654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=87.34  E-value=3.6  Score=38.40  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             HHHHHHHcCCChh--HHHHHHHHHHHHHhcCC-C-CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhH
Q 002638           44 KILTSLSKLADRD--THQIAIEDLEKTIQTLS-Q-ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV  118 (898)
Q Consensus        44 rll~~L~KLsDrD--T~k~Aa~eLD~Ia~~L~-p-e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhL  118 (898)
                      .+-.++..+.|..  .|.-|+..|.+++..-+ + ..++.++..+.....++++.+==.||..|..+|..+++.+.|.|
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L   82 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL   82 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence            3445666676555  89999999999998654 2 24888889888899999999999999999999999987655443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.27  E-value=90  Score=39.12  Aligned_cols=159  Identities=13%  Similarity=0.160  Sum_probs=107.0

Q ss_pred             CCCCCcchhhhHhHHHHHHHHHHHHHcC---CC---hhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCChhhH
Q 002638           25 NASRSSSLSSHLAMVEMKQKILTSLSKL---AD---RDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKPAVK   96 (898)
Q Consensus        25 ~~~~~~~~s~~~~~~eLK~rll~~L~KL---sD---rDT~k~Aa~eLD~Ia~~L~pe~--Lp~fLs~L~es~~s~k~~vR   96 (898)
                      ++.++.-+++...+++.-++++.-+.+-   .+   +......+-+.-.++-.++++.  +...+..|.+.+.+.++..|
T Consensus       267 ~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiR  346 (938)
T KOG1077|consen  267 IYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIR  346 (938)
T ss_pred             hCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccch
Confidence            3456667778888888888777766633   21   2244455556667777787544  88889999999888888888


Q ss_pred             HHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638           97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM  175 (898)
Q Consensus        97 KeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk-DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~  175 (898)
                      --++-.+-.+|..  +....-+.+=...|+..|+ ++|..||.-+++.+=.++..-          ....++.-|++.|.
T Consensus       347 YLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~----------Nak~IV~elLqYL~  414 (938)
T KOG1077|consen  347 YLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS----------NAKQIVAELLQYLE  414 (938)
T ss_pred             hhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----------hHHHHHHHHHHHHh
Confidence            7666655555543  3333334444677888899 999999999999776665433          24567777888886


Q ss_pred             cCCHhHHHHHHHHHHHHHHh
Q 002638          176 EQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       176 eqnk~VQegAasALAkiIE~  195 (898)
                      ..+...++-.+.=.|-+-|-
T Consensus       415 tAd~sireeivlKvAILaEK  434 (938)
T KOG1077|consen  415 TADYSIREEIVLKVAILAEK  434 (938)
T ss_pred             hcchHHHHHHHHHHHHHHHH
Confidence            66666666555444444453

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=87.21  E-value=94  Score=39.23  Aligned_cols=244  Identities=17%  Similarity=0.134  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHhcCCC-CC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhh
Q 002638           57 THQIAIEDLEKTIQTLSQ-ES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRL  129 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~p-e~----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrL  129 (898)
                      .+..|++.+.++-..+.. ..    +...+.|+.    +-.-+++-+|-++|......-.  +.+..|+|.+|..++..-
T Consensus       476 L~Srace~is~~eeDfkd~~ill~aye~t~ncl~----nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS  551 (970)
T COG5656         476 LKSRACEFISTIEEDFKDNGILLEAYENTHNCLK----NNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS  551 (970)
T ss_pred             hHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh----cCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence            566677777777655532 12    333344444    3446788888888887765432  557889999999999998


Q ss_pred             cCCChHHHHHHHHH-HHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC------CHhHHHHHHHHH---HHHHHhcCCC
Q 002638          130 KDSDSGMKEACRDS-IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ------NKGVQSGAAMCM---AKMVECASDP  199 (898)
Q Consensus       130 kDpDs~VR~Ac~~t-LG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq------nk~VQegAasAL---AkiIE~a~d~  199 (898)
                      ++-+..+-.-|.+. ++++++.+..=+.+-.+.....||+...+.+.+.      ...-|.+|..-|   ..++=.....
T Consensus       552 n~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~  631 (970)
T COG5656         552 NTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENR  631 (970)
T ss_pred             ccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccc
Confidence            88887777777765 5566666621122223345566666666666322      123344444333   3333332221


Q ss_pred             C--chhHH-HHHHHHHHHhcCCc---------------hhhH--------------------------HHHHHHHHHHHh
Q 002638          200 P--VVAFQ-KLCARICKLLSNQN---------------FMAK--------------------------ASLLPVVGSLSQ  235 (898)
Q Consensus       200 ~--~~yL~-~LlPRLlkLLks~~---------------~kaK--------------------------~alL~aIgSLA~  235 (898)
                      +  ..|+. .+.|-+--+|+|..               |..|                          .....++..++.
T Consensus       632 p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit  711 (970)
T COG5656         632 PLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT  711 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            1  12211 22333333333321               1111                          112223333332


Q ss_pred             cc----ccCcccHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH--hhhcCCChhhH
Q 002638          236 VG----AIAPQSLEPLLQSIHECLGSTDW--ATRKAAADALSALALHSS-NLVIDGATSTLTVLE--ACRFDKIKPVR  304 (898)
Q Consensus       236 vG----a~~~pyld~lLp~L~e~LsddDW--~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE--~~RfDKvKpVR  304 (898)
                      -|    ...+-|...+...+..++.+++-  .-+..+|+.+-.++...+ +.+..|++-.+.+.-  -...|..++-+
T Consensus       712 yG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~s  789 (970)
T COG5656         712 YGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPAS  789 (970)
T ss_pred             hCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchh
Confidence            22    12245555555556667777654  789999999999999999 588888887777665  34445444333

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=86.06  E-value=9.3  Score=46.16  Aligned_cols=114  Identities=13%  Similarity=0.217  Sum_probs=79.1

Q ss_pred             cCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh
Q 002638           88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF  166 (898)
Q Consensus        88 ~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l  166 (898)
                      .++-+--+|++|+.+||.+|=.-.+.        ++-++.-|.+ ..+.||...+.++|..+..-   +        ...
T Consensus       561 vsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~---G--------~~~  621 (926)
T COG5116         561 VSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGT---G--------DKV  621 (926)
T ss_pred             cccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCC---c--------cHH
Confidence            34566789999999999986433332        3344555555 46899999999999766544   2        123


Q ss_pred             HHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch
Q 002638          167 VKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF  220 (898)
Q Consensus       167 L~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~  220 (898)
                      .--+++.| -+.+.-|..+||.|++.|+=...+...+-...+.-+|..++.+.|-
T Consensus       622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence            33444555 5778889999999999998666555556666777777777776543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=85.98  E-value=4.8  Score=44.55  Aligned_cols=63  Identities=19%  Similarity=0.449  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002638           74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS  148 (898)
Q Consensus        74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA  148 (898)
                      |..++.+...|.+.  ...+.||-+|..+||.|+.          +.-+..|.+-++|+++.||.-|..++-.+-
T Consensus       217 ~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  217 PAAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             hhhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            33465555555543  4569999999999999987          566788888999999999999988876543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.69  E-value=5.1  Score=49.23  Aligned_cols=152  Identities=15%  Similarity=0.126  Sum_probs=101.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc--cCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-CCC
Q 002638          123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE--ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-SDP  199 (898)
Q Consensus       123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~--e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a-~d~  199 (898)
                      |.|.++|+-+.+.||.-|+..+-.+-... ++..  ++.+..+..=..-|...|.+.-+.|...|..-+.+++-.- .-.
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            67888899999999998887654443322 2211  1111223333344556667888888877776666666432 112


Q ss_pred             CchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638          200 PVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       200 ~~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a  276 (898)
                      +...+-+|+-+++--+.+. ...+|.+...+|.-++.. ....+.++.++|.|--.|.|..-.+|-++.|.|..|-..
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v  332 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV  332 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence            2345667777776666554 345777778888776532 456788999999999999999999999999998876443

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=84.86  E-value=13  Score=45.41  Aligned_cols=117  Identities=18%  Similarity=0.177  Sum_probs=91.8

Q ss_pred             chhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638          114 TSTHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       114 I~PhLpkIL~-~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki  192 (898)
                      +...+..++. +..++.+|....|-+-..-++|++-+.+..+     -..+..+++-||+-|.+....||.-||-.+-|+
T Consensus       523 ~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkah-----w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKI  597 (1053)
T COG5101         523 FVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAH-----WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKI  597 (1053)
T ss_pred             HHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHH
Confidence            3444444444 4567899999999999999999999999433     245677889999999999999999999999999


Q ss_pred             HHhcCC--------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638          193 VECASD--------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       193 IE~a~d--------~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~  235 (898)
                      ++-++.        ...+++..++..|-+...+..++-+-..+.+.|-++.
T Consensus       598 vqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIs  648 (1053)
T COG5101         598 VQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVIS  648 (1053)
T ss_pred             HHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHh
Confidence            998732        1246888888888888888777767778888888764

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.81  E-value=77  Score=40.79  Aligned_cols=216  Identities=13%  Similarity=0.144  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccC-CchhHHhhHHHHHHHHhcC
Q 002638           99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN-NGTVVGLFVKPLFEAMMEQ  177 (898)
Q Consensus        99 AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~-~~~~~~~lL~pL~eaL~eq  177 (898)
                      .+..+|.+|+.-|+...++|--.+=.++..+.++.+.|++++..++-+++..+--...+. ..+...-++.-|-..|.. 
T Consensus       568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~-  646 (1014)
T KOG4524|consen  568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT-  646 (1014)
T ss_pred             hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc-
Confidence            455678888888877777776666677788999999999999999999998872110000 001111122222222210 


Q ss_pred             CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh----------------------
Q 002638          178 NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ----------------------  235 (898)
Q Consensus       178 nk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~----------------------  235 (898)
                       -.+-..+---|.-++...+....++++.++.-+++.++.-|-..-...+..+.+++.                      
T Consensus       647 -~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~  725 (1014)
T KOG4524|consen  647 -SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQ  725 (1014)
T ss_pred             -CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence             000111222244455555555556666666666666653221111111111111100                      


Q ss_pred             -----------------------------------c-c------c----------------------cCcccHHH---HH
Q 002638          236 -----------------------------------V-G------A----------------------IAPQSLEP---LL  248 (898)
Q Consensus       236 -----------------------------------v-G------a----------------------~~~pyld~---lL  248 (898)
                                                         + |      .                      ..++..+.   +|
T Consensus       726 ~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~kIl  805 (1014)
T KOG4524|consen  726 STKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLKIL  805 (1014)
T ss_pred             HHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHHHH
Confidence                                               0 0      0                      00012222   22


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHH---HhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhc
Q 002638          249 QSIHECLGSTDWATRKAAADALSALA---LHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG  319 (898)
Q Consensus       249 p~L~e~LsddDW~vRKaA~EaL~sLA---~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~  319 (898)
                      .....+|++++..+|-.|+++|....   ....+.|-|.+...=..+-.|..+|++   =++++|++..-.++.
T Consensus       806 ~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~---L~v~~a~~~i~~m~~  876 (1014)
T KOG4524|consen  806 GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDP---LIVQRAFSCIEQMGK  876 (1014)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCch---HHHHHHHHHHHHHHH
Confidence            23344688999999999999998743   333477778887777777778888888   455556666655553

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=84.53  E-value=61  Score=40.04  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhcC-----CCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-
Q 002638           44 KILTSLSKLADRDTHQIAIEDLEKTIQTL-----SQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-  114 (898)
Q Consensus        44 rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L-----~pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I-  114 (898)
                      .++.++.-..|-|-.+.|+..|..+....     +++.   ..+++..+    .++...+...+   ||+++..-.++- 
T Consensus       380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~---lgai~NlVmefs~  452 (678)
T KOG1293|consen  380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGIT---LGAICNLVMEFSN  452 (678)
T ss_pred             HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHH---HHHHHHHHhhccc
Confidence            34445556689998888888887776543     1222   44444444    24555555544   555555544442 


Q ss_pred             --hhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHH-HHhcCCHhHHHHHHHHHH
Q 002638          115 --STHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE-AMMEQNKGVQSGAAMCMA  190 (898)
Q Consensus       115 --~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~e-aL~eqnk~VQegAasALA  190 (898)
                        .-+|. -.+-.+..-+.|+++.+|..+.|++..++-.. ++..  ..+....+-..++. ...++++.||++++.-|-
T Consensus       453 ~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~-de~~--k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR  529 (678)
T KOG1293|consen  453 LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC-DEEE--KFQLLAKIPANLILDLINDPDWAVQEQCFQLLR  529 (678)
T ss_pred             HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-hHHH--HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence              22222 24567888899999999999999999887666 3211  11223333333333 347889999999999988


Q ss_pred             HHHHhc
Q 002638          191 KMVECA  196 (898)
Q Consensus       191 kiIE~a  196 (898)
                      .++-+.
T Consensus       530 Nl~c~~  535 (678)
T KOG1293|consen  530 NLTCNS  535 (678)
T ss_pred             HhhcCc
Confidence            887654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=84.40  E-value=7.5  Score=39.54  Aligned_cols=146  Identities=9%  Similarity=0.103  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH--H
Q 002638          118 VTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV--E  194 (898)
Q Consensus       118 LpkIL~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI--E  194 (898)
                      -|.++..+++-|+-. ...+|..|..++|.|..-  +|.          ..+-......+..  .+.....+-....  .
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~----------~~k~~~~~~~~~~--~~~~~~~~~~~~l~~~   73 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPY----------KHKSIQKSLDSKS--SENSNDESTDISLPMM   73 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcH----------HHhcccccCCccc--cccccccchhhHHhhc
Confidence            366777777777765 479999999999976531  110          0000000000000  0111111111111  1


Q ss_pred             hcCCCCchh-HHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002638          195 CASDPPVVA-FQKLCARICKLLSNQNFM-AKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALS  271 (898)
Q Consensus       195 ~a~d~~~~y-L~~LlPRLlkLLks~~~k-aK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~  271 (898)
                      +......+| ....+..|+++|++++.. -..+++.+|-.++. .|....+|++.++|.++..+..-+..+|.....-|+
T Consensus        74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~  153 (160)
T PF11865_consen   74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA  153 (160)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence            111122244 445778888899887543 23366777777764 454459999999999999988655588888888887


Q ss_pred             HHHHhc
Q 002638          272 ALALHS  277 (898)
Q Consensus       272 sLA~av  277 (898)
                      .|...+
T Consensus       154 ~lv~iv  159 (160)
T PF11865_consen  154 DLVSIV  159 (160)
T ss_pred             HHHHHh
Confidence            776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=84.29  E-value=22  Score=43.66  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=105.9

Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh--cccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL--NGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV  193 (898)
Q Consensus       116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~li--k~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI  193 (898)
                      .+-.....+.+..++|  ..++.|+|.++-.+++-+-  +.++     .-..+..||+..|.++.-.|+.++.+||..++
T Consensus       375 ~~~t~~~l~~~~~~kd--~~~~aaa~l~~~s~srsV~aL~tg~-----~~~dv~~plvqll~dp~~~i~~~~lgai~NlV  447 (678)
T KOG1293|consen  375 ETTTESHLMCLPPIKD--HDFVAAALLCLKSFSRSVSALRTGL-----KRNDVAQPLVQLLMDPEIMIMGITLGAICNLV  447 (678)
T ss_pred             HHHHHHHHcccccccc--HHHHHHHHHHHHHHHHHHHHHHcCC-----ccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence            3334444444555544  4588888888776666552  2222     13457788889999999999999999999988


Q ss_pred             HhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638          194 ECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADA  269 (898)
Q Consensus       194 E~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea  269 (898)
                      =+-.+.-..++. ..+.++..++.++.+-.|...+-++.-+.- .-  ..+.++-+..+..|..+..|+||.+-..+.+.
T Consensus       448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql  527 (678)
T KOG1293|consen  448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL  527 (678)
T ss_pred             hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence            543333223443 367888999999988888887888777642 21  34677788888889999999999987777666


Q ss_pred             HHHHHH
Q 002638          270 LSALAL  275 (898)
Q Consensus       270 L~sLA~  275 (898)
                      |-.+..
T Consensus       528 lRNl~c  533 (678)
T KOG1293|consen  528 LRNLTC  533 (678)
T ss_pred             HHHhhc
Confidence            655443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=84.12  E-value=1.5  Score=34.09  Aligned_cols=29  Identities=28%  Similarity=0.394  Sum_probs=26.5

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638          121 IISHIVKRLKDSDSGMKEACRDSIGSLSK  149 (898)
Q Consensus       121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~  149 (898)
                      .+|.+++.|+++++.|+..|+|+|+.|++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            57889999999999999999999999873

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=84.11  E-value=8.2  Score=47.80  Aligned_cols=156  Identities=15%  Similarity=0.115  Sum_probs=105.6

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638          123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPV  201 (898)
Q Consensus       123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~  201 (898)
                      +.|...+.|.||.+|..-.-+++  ..++   +..     -...++.|+.. +.+.|-.|.-+|..||.=+|-..+    
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~a--lAy~---GTg-----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----  587 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLA--LAYV---GTG-----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----  587 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHH--HHHh---ccC-----chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence            45667788889999977665544  2222   211     12244444444 578899999999999887775333    


Q ss_pred             hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchH
Q 002638          202 VAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNL  280 (898)
Q Consensus       202 ~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~  280 (898)
                          ..||+.+.+|... ++.+|..+--++|-. .+|..    ....+..|-....|..--+|..||=+++-|..-.-+.
T Consensus       588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIa-CAGtG----~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~  658 (929)
T KOG2062|consen  588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIA-CAGTG----LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ  658 (929)
T ss_pred             ----hhchHHHHHHhhhcChhhhhhHHHHHhhh-hcCCC----cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence                3678888888643 677776555555542 22311    1223333333345666779999999999999988899


Q ss_pred             HHhhHHHHHHHHHhhhcCCCh
Q 002638          281 VIDGATSTLTVLEACRFDKIK  301 (898)
Q Consensus       281 L~Py~~~~I~~LE~~RfDKvK  301 (898)
                      +-|-...+.+-++..-.||.+
T Consensus       659 ~~pkv~~frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  659 LCPKVNGFRKQLEKVINDKHE  679 (929)
T ss_pred             cCchHHHHHHHHHHHhhhhhh
Confidence            999999999999988889998

>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised

Probab=83.92  E-value=1.7  Score=40.58  Aligned_cols=55  Identities=5%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638           94 AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK  149 (898)
Q Consensus        94 ~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~  149 (898)
                      ..|-.+++.|+.++..++-.+.+++|+||..+.+...| ...|+.++-.+++.+=+
T Consensus         4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr   58 (90)
T PF11919_consen    4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR   58 (90)
T ss_dssp             HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999998 55788888888876644

This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=83.89  E-value=23  Score=33.56  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhc--------CCChhhHHHHHHHHH
Q 002638          241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF--------DKIKPVRDSMNEALQ  312 (898)
Q Consensus       241 ~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~Rf--------DKvKpVRD~A~eALe  312 (898)
                      ..+...+|..|...|.+.+|.+--.|+..|-++....|+.|..++.+-.-..+-++|        |....||+-+.+.++
T Consensus        32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~  111 (115)
T cd00197          32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ  111 (115)
T ss_pred             CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence            456778899999999999999999999999999999998887776443322232222        335679999999999


Q ss_pred             HHH
Q 002638          313 LWK  315 (898)
Q Consensus       313 lWK  315 (898)
                      .|.
T Consensus       112 ~w~  114 (115)
T cd00197         112 LWA  114 (115)
T ss_pred             HHh
Confidence            996

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=83.61  E-value=8.7  Score=39.87  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCC-CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhh----c
Q 002638           56 DTHQIAIEDLEKTIQTLSQE-SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL----K  130 (898)
Q Consensus        56 DT~k~Aa~eLD~Ia~~L~pe-~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrL----k  130 (898)
                      +.|+.|++.|..+....... .+..|+.++..-+.+ ..-+|--|.+.|..++..++..+.++|..++..+-+.|    +
T Consensus        42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k  120 (169)
T PF08623_consen   42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLK  120 (169)
T ss_dssp             HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCC
Confidence            58999999999999875433 388889999888877 89999999999999999999988887777777665555    5


Q ss_pred             CCC--------hHHHHHHHHHHHHHHHHHhcccccCCch-hHHhhHHH
Q 002638          131 DSD--------SGMKEACRDSIGSLSKLYLNGKEENNGT-VVGLFVKP  169 (898)
Q Consensus       131 DpD--------s~VR~Ac~~tLG~LA~~lik~~~e~~~~-~~~~lL~p  169 (898)
                      +..        .....++..++..|...+.  +. .... .|..|+..
T Consensus       121 ~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~--~~-~~~~~~~~~f~~~  165 (169)
T PF08623_consen  121 ENAVKQEIEKQQELIRSVLRAVKALNSKIP--GA-ESSPNKWNEFVEW  165 (169)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHHHHH-HSST--S--SSSH-HHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHhCc--cc-ccCHHHHHHHHHH
Confidence            543        1223344445555544441  11 1222 56666544

; PDB: 4A0C_A 1U6G_C.

>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein

Probab=83.56  E-value=27  Score=42.45  Aligned_cols=144  Identities=12%  Similarity=0.188  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638           58 HQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        58 ~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V  136 (898)
                      ...-+.+|-..+..|+.+ ...++..|+...- ..++..+++.+..|++++..++.    |++.++..+++.+..+....
T Consensus        53 l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~  127 (563)
T PF05327_consen   53 LIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSI  127 (563)
T ss_dssp             HHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHH
T ss_pred             HHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccc
Confidence            444555666666667665 7777888875432 34456677777888888877755    55666777777776655432


Q ss_pred             H--------------HHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638          137 K--------------EACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPP  200 (898)
Q Consensus       137 R--------------~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL--~eqnk~VQegAasALAkiIE~a~d~~  200 (898)
                      .              +.+-.+|..|.+.+   +     .....+.+.|...+  ......++.+=...|-++++.++..-
T Consensus       128 ~~~~~~~~~~~~~~~~~vH~~L~~Il~lv---P-----~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~  199 (563)
T PF05327_consen  128 AEWPGCPPEKRREIYERVHDALQKILRLV---P-----TSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELR  199 (563)
T ss_dssp             HH---------------HHHHHHHHHHH----G-----GGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGH
T ss_pred             cccchhhhhhhhhhHHHHHHHHHHHHHHc---C-----CCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHH
Confidence            2              23445555555554   1     11222333333333  23466788888888888888876665


Q ss_pred             chhHHHHHHHHHHH
Q 002638          201 VVAFQKLCARICKL  214 (898)
Q Consensus       201 ~~yL~~LlPRLlkL  214 (898)
                      ..+|.-++.||+++
T Consensus       200 ~~Il~lIi~rLi~i  213 (563)
T PF05327_consen  200 SDILSLIIERLIKI  213 (563)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67788888888876

RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=83.41  E-value=40  Score=42.15  Aligned_cols=265  Identities=12%  Similarity=0.107  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh
Q 002638           38 MVEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST  116 (898)
Q Consensus        38 ~~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P  116 (898)
                      -.++-.++.-||..+ +..+-.+.++.+++-++.     .|..++....+.. +.+...=+.|+.+|=++.---..-+.+
T Consensus       387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLId-----aL~~~iq~~i~~~-~~d~K~VENcvCilRNLSYrl~~Evp~  460 (717)
T KOG1048|consen  387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLID-----ALLFSIQTAIQKS-DLDSKSVENCVCILRNLSYRLEAEVPP  460 (717)
T ss_pred             cceeeehhhhhhccccchhHHHHHHHhhccchHH-----HHHHHHHHHHHhc-cccchhHHHHHHHHhhcCchhhhhcCH
Confidence            344555667788777 345555555555554443     1333333222222 233344466777776665433333544


Q ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc----------cc--cc--CCc-hhHHhhHHHHHHHHh-cCCHh
Q 002638          117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN----------GK--EE--NNG-TVVGLFVKPLFEAMM-EQNKG  180 (898)
Q Consensus       117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik----------~~--~e--~~~-~~~~~lL~pL~eaL~-eqnk~  180 (898)
                      -..+.+..+-+...--.+.      +.+|.+....-+          +.  ..  +.+ -..+.++++-+..|. ..|..
T Consensus       461 ~~~~~~~~~~~~~~~~~~~------~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~  534 (717)
T KOG1048|consen  461 KYRQVLANIARLPGVGPPA------ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDN  534 (717)
T ss_pred             hhhhHhhcccccccCCCcc------cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchH
Confidence            4444444333222211121      333333332211          10  00  000 235667777677774 46899


Q ss_pred             HHHHHHHHHHHHHHhcCCCCchhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc--ccCcccHHHHHHH
Q 002638          181 VQSGAAMCMAKMVECASDPPVVAF-------QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG--AIAPQSLEPLLQS  250 (898)
Q Consensus       181 VQegAasALAkiIE~a~d~~~~yL-------~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG--a~~~pyld~lLp~  250 (898)
                      ++++++.||..+.-+... ...|+       ++.+|-|+.+|.+++..+..++..+++=++. +-  ..+   ....|+-
T Consensus       535 TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li---gk~a~~~  610 (717)
T KOG1048|consen  535 TLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI---GKYAIPD  610 (717)
T ss_pred             HHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh---hcchHHH
Confidence            999999999999876422 22232       2467899999999887766666666666542 11  111   1456777


Q ss_pred             HHHhhCC------CCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCChhhHHHHHHHHHHH--HHh
Q 002638          251 IHECLGS------TDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIKPVRDSMNEALQLW--KKI  317 (898)
Q Consensus       251 L~e~Lsd------dDW~vRKaA~EaL~sLA~avge~L~Py-----~~~~I~~LE~~RfDKvKpVRD~A~eALelW--K~L  317 (898)
                      |.++|.+      .+|++=.++|-+|..|...-.+.-..+     ++.++.+...  ++..|.++-+....-.+|  +++
T Consensus       611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888765      358888888888877764444322222     1222322223  777777775544444444  444


Q ss_pred             hcC
Q 002638          318 AGK  320 (898)
Q Consensus       318 a~~  320 (898)
                      -..
T Consensus       689 h~~  691 (717)
T KOG1048|consen  689 HFK  691 (717)
T ss_pred             hhh
Confidence            433

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.32  E-value=47  Score=41.70  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhch
Q 002638           37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTS  115 (898)
Q Consensus        37 ~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~  115 (898)
                      ++-.--..++.++-|.+|....-+.+..|-.+.. .....|..|.--++..+++++-.+|+-++-+.=-+++.|. +.+.
T Consensus       276 alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv  354 (948)
T KOG1058|consen  276 ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV  354 (948)
T ss_pred             HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence            3334456788888999999888888877777763 1222355555455555678888999999887777777776 4466


Q ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~  195 (898)
                      .+|.+=+..-...=.|..-.-|+.-..+|...+-.+.        ++-..+++-|++-|++.|+..-.+..+=+..++|-
T Consensus       355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--------~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek  426 (948)
T KOG1058|consen  355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--------EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK  426 (948)
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence            6665544444444333445679999999988887771        44677889999999999988777777777777776


Q ss_pred             cCCCCchhHHHHHHHHHHHhcCCchh
Q 002638          196 ASDPPVVAFQKLCARICKLLSNQNFM  221 (898)
Q Consensus       196 a~d~~~~yL~~LlPRLlkLLks~~~k  221 (898)
                      .+++-..++.+|+.-|-++=....|+
T Consensus       427 ~p~Lr~~ii~~l~~~~~~irS~ki~r  452 (948)
T KOG1058|consen  427 FPNLRASIIEKLLETFPQIRSSKICR  452 (948)
T ss_pred             CchHHHHHHHHHHHhhhhhcccccch
Confidence            66665566777766665554544444

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=83.08  E-value=28  Score=44.57  Aligned_cols=147  Identities=14%  Similarity=0.225  Sum_probs=111.2

Q ss_pred             hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHH
Q 002638           93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF  171 (898)
Q Consensus        93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD-s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~  171 (898)
                      +.+|..++..|+.+|-.|++...    +.||.+++-|.=.+ ..||+-.+-+++-|+.+|+        ....-|.|.+.
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--------am~d~YiP~I~ 1012 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--------AMTDRYIPMIA 1012 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--------HHHHHhhHHHH
Confidence            56888999999999998887654    35677777777665 5889999999999999984        23566888999


Q ss_pred             HHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHH
Q 002638          172 EAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQ  249 (898)
Q Consensus       172 eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp  249 (898)
                      ..|-++.+-|.-.++.-|+.+++..   ...+-..|+-|++-.|=+.+.+++.-+==+|+.+....  -.|+.+|-..|-
T Consensus      1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence            9999999999999999999999853   22333457777777777778888887777889887665  345555555555


Q ss_pred             HHHHh
Q 002638          250 SIHEC  254 (898)
Q Consensus       250 ~L~e~  254 (898)
                      .|-++
T Consensus      1090 ~ln~~ 1094 (1529)
T KOG0413|consen 1090 ALNQA 1094 (1529)
T ss_pred             HHHHH
Confidence            55554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=82.75  E-value=5.5  Score=47.99  Aligned_cols=155  Identities=18%  Similarity=0.144  Sum_probs=107.7

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVV  202 (898)
Q Consensus       124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~~  202 (898)
                      +|...|.|.||.+|-.-+.+++ ++...  .+       -..+++.|+.. +.+.|..|.-+|..||.-+|=..++    
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~a-lAy~G--Tg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----  585 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLA-LAYVG--TG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----  585 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHH-HHHhc--CC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc----
Confidence            5667788999999988877765 22222  11       11244455544 5788999999999999888743333    


Q ss_pred             hHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002638          203 AFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV  281 (898)
Q Consensus       203 yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L  281 (898)
                          ++++.+++|... ++.+|...--++|-. .+|.    .....+-.|-....|..--+|.+||=+++-|....-+.+
T Consensus       586 ----~lv~tvelLs~shN~hVR~g~AvaLGia-cag~----G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         586 ----LLVGTVELLSESHNFHVRAGVAVALGIA-CAGT----GDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             ----hhhHHHHHhhhccchhhhhhhHHHhhhh-hcCC----ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence                667777777654 677887655555543 2221    112233333344466677899999999999999999999


Q ss_pred             HhhHHHHHHHHHhhhcCCCh
Q 002638          282 IDGATSTLTVLEACRFDKIK  301 (898)
Q Consensus       282 ~Py~~~~I~~LE~~RfDKvK  301 (898)
                      -|-..+|++-++..-.||.+
T Consensus       657 np~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         657 NPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             ChhHHHHHHHHHHHHhhhhH
Confidence            99999999999999999887

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=82.14  E-value=1.2e+02  Score=36.07  Aligned_cols=213  Identities=12%  Similarity=0.140  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC-h
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-S  134 (898)
Q Consensus        57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~-k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD-s  134 (898)
                      .|-.|+++|...+..++.+.++.+-.+..+-.... ...+|++++.+|..++++........=    ..+.+.+.++. +
T Consensus         6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~   81 (464)
T PF11864_consen    6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND   81 (464)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc
Confidence            45567777877777776666666666555554333 355999999999999998876433222    22333333331 2


Q ss_pred             HHHHHHHHHHHHHHHHHhc-ccc-cCCchhHHhhHHHHHHHHhcC-------------CH---hHHHHHHHHHHHHHHh-
Q 002638          135 GMKEACRDSIGSLSKLYLN-GKE-ENNGTVVGLFVKPLFEAMMEQ-------------NK---GVQSGAAMCMAKMVEC-  195 (898)
Q Consensus       135 ~VR~Ac~~tLG~LA~~lik-~~~-e~~~~~~~~lL~pL~eaL~eq-------------nk---~VQegAasALAkiIE~-  195 (898)
                      ..=+.-.+++..|..+.-+ .++ .+....+...+.+++++....             +.   ......+.-|=.++-+ 
T Consensus        82 ~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv  161 (464)
T PF11864_consen   82 DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV  161 (464)
T ss_pred             hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence            2223344445555444411 011 112233334444444332110             00   0122333333333333 


Q ss_pred             c----CCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638          196 A----SDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (898)
Q Consensus       196 a----~d~~~~yL~~LlPRLlkLLks~~~k-aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL  270 (898)
                      .    .....+.+..|+.+++.+-...... .=.++|..+.+++.-|..=...+..++..|-......  .+.+.+-+++
T Consensus       162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m  239 (464)
T PF11864_consen  162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTM  239 (464)
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHH
Confidence            2    2344467888888888884433221 1136788888887666444567777777777664443  5666677788


Q ss_pred             HHHHH
Q 002638          271 SALAL  275 (898)
Q Consensus       271 ~sLA~  275 (898)
                      ..|+.
T Consensus       240 ~nL~~  244 (464)
T PF11864_consen  240 RNLLK  244 (464)
T ss_pred             HHHHc
Confidence            87774

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=81.94  E-value=53  Score=34.08  Aligned_cols=71  Identities=10%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY  151 (898)
Q Consensus        77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l  151 (898)
                      +..||..|++..-+.+..+|..|+.+++.+.+.  ..+-|  .+.+|+|+-...||++.||+.|...+..+.+..
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            456777777766678889999999999888873  33333  345777788888999999999888888777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	898
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	9e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-04
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	1e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	6e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-04

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 77  LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL-KDSDSG 135
           L  +    Y+   + K  ++KES+ +L  +   H +L +     ++S + K + KDS+  
Sbjct: 13  LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72

Query: 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195
           +       +  L+K       +         V  L E   E+   V +     +  +   
Sbjct: 73  LVAMAGKCLALLAKGL----AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS 128

Query: 196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVG---SLSQVGAIAPQSLEPLLQSIH 252
            S       +     I + LSN+N   K+     +    + +Q  A+  + L+ L  S+ 
Sbjct: 129 TS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV 182

Query: 253 ECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRD 305
           + L   D   R ++A+AL  L     +  +      L  ++  +  KIK  ++
Sbjct: 183 KTLNEPDPTVRDSSAEALGTLIKLMGDKAVT---PLLADVDPLKMAKIKECQE 232

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 72.4 bits (177), Expect = 3e-13
 Identities = 50/297 (16%), Positives = 108/297 (36%), Gaps = 16/297 (5%)

Query: 26  ASRSSSLSSHLAMVEMKQKILTSLSKLA-DRDTH--QIAIEDLEKTIQTLSQESL-PMLL 81
           AS+    +  L +  +K +I+   S LA D       +A+E      Q L QE L  +++
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 244

Query: 82  NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR 141
             L +++ D    V+         + +          T ++      +KD ++ ++ A  
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV 201
             +    +      +     ++   +  + E + + N+ V+S  A  +  +         
Sbjct: 303 HKVKEFCEN--LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360

Query: 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWA 261
           +  + L       L ++    + +++  +  +++V  I  Q  + LL +I E      W 
Sbjct: 361 I--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQLSQSLLPAIVELAEDAKWR 417

Query: 262 TRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318
            R A  + +  LA        D   ++L    A   D +  +R     A    KK+ 
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSL--CMAWLVDHVYAIR---EAATSNLKKLV 469

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 37/252 (14%), Positives = 84/252 (33%), Gaps = 19/252 (7%)

Query: 30  SSLSSHLAMVEMKQKILTSLSK-LADRDTH--QIAIEDLEKTIQTLSQESL-PMLLNCLY 85
             LS  L      + +L      L D         I +L+   + +    L   LL  + 
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408

Query: 86  ESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIG 145
           E + D K  V+   +  + L+             K+ S  +  L D    ++EA   ++ 
Sbjct: 409 ELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466

Query: 146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ 205
            L +    GKE          +  +     + N   +     C+  + E          +
Sbjct: 467 KLVEK--FGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT--K 518

Query: 206 KLCARICKLLSNQNFMAKASLLPVVGSLSQV--GAIAPQSLEPLLQSIHECLGSTDWATR 263
            +   + ++  +     + ++   +  +  +   +     ++P+L+   +     D   +
Sbjct: 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE---KLTQDQDVDVK 575

Query: 264 KAAADALSALAL 275
             A +AL+ L+L
Sbjct: 576 YFAQEALTVLSL 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 5e-12
 Identities = 100/640 (15%), Positives = 178/640 (27%), Gaps = 160/640 (25%)

Query: 38  MVEMK---QKILTSLSK--LADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPK 92
             E +   + IL+      + + D   +  +D+ K+I  LS+E +  ++           
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSI--LSKEEIDHIIM---------S 57

Query: 93  PAVKKESVRLLALVCELHSELTSTHVTK--------IISHIVKRLKDSDSGMK--EACRD 142
                 ++RL   +     E+    V +        ++S I    +      +     RD
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 143 SIGS----LSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQ------SG-----A 185
            + +     +K  ++  +             L +A++E    K V       SG      
Sbjct: 118 RLYNDNQVFAKYNVSRLQP---------YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 186 AMCMAKMVECASDPPV--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS 243
            +C++  V+C  D  +  +  +  C     +L          LL     +          
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQ-----KLLYQ---IDPNWTSRSDH 219

Query: 244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSSN----LVIDGATSTLTVLEACRFD- 298
              +   IH                 L  L          LV+           A  F+ 
Sbjct: 220 SSNIKLRIHS------------IQAELRRLLKSKPYENCLLVLLN-VQNAKAWNA--FNL 264

Query: 299 --KIKPV--RDSMNEALQLWKKIAGKVDVGSDDQKSS-PVPGGKAPEPGEDL--KNLN-- 349
             KI  +  R          K++   +   +    S         P+  + L  K L+  
Sbjct: 265 SCKIL-LTTRF---------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 350 PSDKRAELSAKGPLNGSSPASASLTKGKA--GNI----SEKAVVILKKKAPALSDKELNP 403
           P D   E+    P   S  A  S+  G A   N      +K   I++     L   E   
Sbjct: 315 PQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR- 372

Query: 404 EFFQNLSRGSGDLPVEVVVPRRCLNSSNSNNEEESDPSDLDSKGRSNRMGNSQTDDFSVS 463
           + F  LS      P    +P   L S    +  +SD   + +K     +   Q  + ++S
Sbjct: 373 KMFDRLSV----FPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 464 LNN--------------KHRSIDRGTAGGNGKDPRMRAPDVER--------------ELS 495
           + +               HRSI          D     P                  E  
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 496 GNRAGFSK--TDSQAEGSFINNKGNWLAIQRQLMQLERQQAHLMNMLQDFMG-GSH--DS 550
                F     D      F+  K     I R           ++N LQ       +  D+
Sbjct: 488 ERMTLFRMVFLDF----RFLEQK-----I-RHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 551 MVTLENRVRGLERVVEDMARDLSISSGRRGSNFAMGFEGS 590
               E  V  +   +  +  +L  S        A+  E  
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 5e-07
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 30/162 (18%)

Query: 33  SSHLAMVEMKQKIL--TSLSKLADR----DTHQIAIEDLEKTIQTLSQESLPMLLNCLYE 86
           +       +  KIL  T   ++ D      T  I+++    T+     E   +LL  L  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDC 313

Query: 87  SSNDPKPAVKKESVRLLALVCELHSELTST-----HV-----TKIISHIVKRLKDSDSGM 136
              D    V   + R L+++ E   +  +T     HV     T II   +  L+ ++   
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--Y 371

Query: 137 KEACRD----------SIGSLSKLYLNGKEENNGTVVGLFVK 168
           ++                  LS ++ +  + +   VV    K
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 42/313 (13%), Positives = 98/313 (31%), Gaps = 20/313 (6%)

Query: 44  KILTSLSKLADRDTHQIAIEDLEKTIQTLS---QESLPMLLNCLYESSNDPKPAVKKESV 100
           ++ ++++K  D      A++ +   +           P +L CL      P+ AV+K ++
Sbjct: 137 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTI 196

Query: 101 RLLALVCELHSELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENN 159
             L  +      +       +I H++  L  +DS          I ++S+   +   E  
Sbjct: 197 IALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 253

Query: 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQ 218
             ++      + +     +  ++          V             +     K L+ + 
Sbjct: 254 EKII----PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309

Query: 219 NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278
           N+             + + A      +      +       W  R+AAA  L A+     
Sbjct: 310 NYNYDDED----EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH 365

Query: 279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDVGSDDQKSSPVPGGKA 338
            ++ +   +    L +   ++ + V+  +  A     K    V     D    P    + 
Sbjct: 366 EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD----PDAMEQG 421

Query: 339 PEPGEDLKNLNPS 351
             P   L++  P+
Sbjct: 422 ETPLTMLQSQVPN 434

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 27/241 (11%)

Query: 71  TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130
              +  L  L+  L    +D    V K ++ ++ ++ +   +L    + K+ S +    K
Sbjct: 28  KYDESVLKKLIELL----DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL---KK 80

Query: 131 DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMA 190
                + +    + G ++K            +V   +  LF      ++  +   +  + 
Sbjct: 81  SEAIPLTQEIAKAFGQMAK--------EKPELVKSMIPVLFANYRIGDEKTKINVSYALE 132

Query: 191 KMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS 250
           ++ +          +   +    +LS++N   K + L     +  +G  + + + P L  
Sbjct: 133 EIAKANPMLMASIVRDFMS----MLSSKNREDKLTAL---NFIEAMGENSFKYVNPFLPR 185

Query: 251 IHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA 310
           I   L   D   R +A +AL  LA  +  L        +        D    V  ++ E 
Sbjct: 186 IINLLHDGDEIVRASAVEALVHLATLNDKLR-----KVVIKRLEELNDTSSLVNKTVKEG 240

Query: 311 L 311
           +
Sbjct: 241 I 241

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 49  LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE 108
           L  L+      +AI              +P L+N L    +     V   ++  L  +  
Sbjct: 217 LHNLSHHREGLLAI---------FKSGGIPALVNMLGSPVDS----VLFHAITTLHNLL- 262

Query: 109 LHSELTSTHVTK--IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF 166
           LH E     V     +  +V  L  ++        D +  L+     G +E+   ++   
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQESKLIILASG 318

Query: 167 -VKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKA 224
             + L   M       +    +  +  +  C+S+ P +        +   L++ +     
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378

Query: 225 SLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278
           + L  + +LS         +E LL ++ + LGS D      AA  LS L  ++ 
Sbjct: 379 NCLWTLRNLSDAATKQEG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 52.5 bits (125), Expect = 6e-07
 Identities = 34/268 (12%), Positives = 82/268 (30%), Gaps = 29/268 (10%)

Query: 45  ILTSLSKLADRDTHQI------AIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           ++    +     + +I       +     +        +   +  L+  + D +P V+K 
Sbjct: 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234

Query: 99  SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN 158
             R L ++ E+  +    H+  I+ ++++R +D D  +     +   +L++  +      
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294

Query: 159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ 218
               +   +  L   M   +  +                D       + C+     +   
Sbjct: 295 R--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG--DDTISDWNLRKCSAAALDVLAN 350

Query: 219 NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278
            +                     + L  +L  + E L   +W  +++    L A+A    
Sbjct: 351 VY-------------------RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391

Query: 279 NLVIDGATSTLTVLEACRFDKIKPVRDS 306
             +I      +  L  C  DK   VR  
Sbjct: 392 QGMIPYLPELIPHLIQCLSDKKALVRSI 419

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 33/272 (12%), Positives = 83/272 (30%), Gaps = 35/272 (12%)

Query: 42  KQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVR 101
           K + L ++   +      +    +         ++ P LL  L    +       + +  
Sbjct: 92  KSECLNNIGDSSPLIRATVG-ILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 102 LLALVCE-----LHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
            L  +CE     L S++    +  +I   ++  K S   ++      +       +  + 
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF----IISRT 206

Query: 157 ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216
           +     +  F++ LF    ++   V+      +  ++E   D  +     +   + +   
Sbjct: 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266

Query: 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS------------------- 257
           +Q+            +L++        +  L + I   +                     
Sbjct: 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326

Query: 258 ------TDWATRKAAADALSALALHSSNLVID 283
                 +DW  RK +A AL  LA    + ++ 
Sbjct: 327 GGDDTISDWNLRKCSAAALDVLANVYRDELLP 358

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 43/335 (12%), Positives = 111/335 (33%), Gaps = 33/335 (9%)

Query: 7   KFTKPAKPTSQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLA---DRDTHQIAIE 63
           KF +  K +S   +S +        +S   A++      + +L  LA   + +  +    
Sbjct: 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237

Query: 64  DLEKTIQTLSQE---SLPMLLNCLYESSNDPKPAVKKESVRLLALVCE--LHSELTSTHV 118
            L   ++         +  ++  + + + D    V  E+      + E  +  ++   H+
Sbjct: 238 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 297

Query: 119 TKIISHIVKRLK-------------------DSDSGMKEACRDSIGSLSKLYLNGKEENN 159
            K+I  +V  +K                   D         + S  +L  L    ++E  
Sbjct: 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-- 355

Query: 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQN 219
             ++   +  L E +      V+    + +  + E      +    +L   + + LS++ 
Sbjct: 356 --LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK 413

Query: 220 FMAKASLLPVVGSLSQ--VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277
            + ++     +   +   V       L+PL+  + + +  ++   ++AA  A + L   +
Sbjct: 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473

Query: 278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312
              ++      L  L              + +A+ 
Sbjct: 474 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIG 508

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.7 bits (124), Expect = 8e-07
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 23/245 (9%)

Query: 39  VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           VE  +    +L  L+      +AI              +P L+  L   S      V   
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAI---------FKSGGIPALVKML--GSPVDS--VLFY 120

Query: 99  SVRLLALVCELHSELTSTHVTK--IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
           ++  L  +  LH E     V     +  +V  L  ++        D +  L+     G +
Sbjct: 121 AITTLHNLL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQ 175

Query: 157 ENNGTVVGL-FVKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214
           E+   ++     + L   M       +    +  +  +  C+S+ P +        +   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274
           L++ +     + L  + +LS         +E LL ++ + LGS D      AA  LS L 
Sbjct: 236 LTDPSQRLVQNCLWTLRNLSDAATKQEG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 275 LHSSN 279
            ++  
Sbjct: 295 CNNYK 299

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 34/252 (13%)

Query: 59  QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST-- 116
            +   + +  +       +  L+  +  +    +  + + ++  L  +   H E      
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAG--DREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 117 --HVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFE 172
              +   +  +VK L       + +A    I +L+         N+  +     +  L +
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-----LCPANHAPLREQGAIPRLVQ 404

Query: 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS 232
            ++  ++  Q   +M   +             +     +  L  + +             
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI---------V 455

Query: 233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN---LVIDGATSTL 289
           +  +  I             + L S     ++ AA  L  LA        +  +GAT+ L
Sbjct: 456 IRGLNTIPL---------FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506

Query: 290 TVLEACRFDKIK 301
           T L   R + + 
Sbjct: 507 TELLHSRNEGVA 518

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 26/230 (11%)

Query: 66  EKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE--LTSTHVTKIIS 123
           +        ++LP +LN +    ND    VK+ +   +  + +  +E      H+  ++ 
Sbjct: 402 KVQRTYYVHQALPSILNLM----NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457

Query: 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA--MMEQNKGV 181
             +  L+D           +I +L +                 V  L  A   ++     
Sbjct: 458 ACLIGLQDHPKVATNCSW-TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNA 516

Query: 182 QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAK---------------ASL 226
           ++ A   +  MVE A+D        +   +   L     + +               +++
Sbjct: 517 RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576

Query: 227 LPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWAT-RKAAADALSALA 274
           L V+ ++ +   +      + L+      L   D A        A+SALA
Sbjct: 577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALA 626

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 45.2 bits (106), Expect = 9e-05
 Identities = 19/205 (9%), Positives = 60/205 (29%), Gaps = 30/205 (14%)

Query: 74  QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHI-VKRLKDS 132
           +     L+  + E++      V+  +   L  +   +      ++ + +  + +  +K  
Sbjct: 219 EGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP 278

Query: 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192
           +  +     +   ++ +  ++   E             +   +   K V       + + 
Sbjct: 279 NDKVASMTVEFWSTICEEEIDIAYELAQFPQ--SPLQSYNFALSSIKDVVPNLLNLLTRQ 336

Query: 193 VECASD---PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ 249
            E   D      ++         +   N                           EP+L+
Sbjct: 337 NEDPEDDDWNVSMSAGACLQLFAQNCGNHIL------------------------EPVLE 372

Query: 250 SIHECLGSTDWATRKAAADALSALA 274
            + + + + +W  R+AA  A  ++ 
Sbjct: 373 FVEQNITADNWRNREAAVMAFGSIM 397

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 23/245 (9%)

Query: 39  VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           VE  +    +L  L+      +AI              +P L+  L    +     V   
Sbjct: 71  VETARCTAGTLHNLSHHREGLLAI---------FKSGGIPALVKMLGSPVDS----VLFY 117

Query: 99  SVRLLALVCELHSELTSTHVTK--IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156
           ++  L  +  LH E     V     +  +V  L  ++        D +  L+     G +
Sbjct: 118 AITTLHNLL-LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQ 172

Query: 157 ENNGTVVGL-FVKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214
           E+   ++     + L   M       +    +  +  +  C+S+ P +        +   
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232

Query: 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274
           L++ +     + L  + +LS         +E LL ++ + LGS D      AA  LS L 
Sbjct: 233 LTDPSQRLVQNCLWTLRNLSDAATKQEG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291

Query: 275 LHSSN 279
            ++  
Sbjct: 292 CNNYK 296

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 30/252 (11%), Positives = 74/252 (29%), Gaps = 34/252 (13%)

Query: 59  QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV 118
            +   + +  +       +  L+  +  +    +  + + ++  L  +   H E      
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAG--DREDITEPAICALRHLTSRHQEAEMAQN 346

Query: 119 T----KIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFE 172
                  +  +VK L       + +A    I +L+         N+  +     +  L +
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-----LCPANHAPLREQGAIPRLVQ 401

Query: 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS 232
            ++  ++  Q   +M   +             +     +  L  + +             
Sbjct: 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI---------V 452

Query: 233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN---LVIDGATSTL 289
           +  +  I             + L S     ++ AA  L  LA        +  +GAT+ L
Sbjct: 453 IRGLNTIPL---------FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503

Query: 290 TVLEACRFDKIK 301
           T L   R + + 
Sbjct: 504 TELLHSRNEGVA 515

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 57/238 (23%)

Query: 74  QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133
            E + M +  L     D    V++ +   L    ++  E       + +  ++K LKD D
Sbjct: 18  PEKVEMYIKNL----QDDSYYVRRAAAYALG---KIGDE-------RAVEPLIKALKDED 63

Query: 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193
           + ++ A  D++G +      G E          V+PL +A+ +++  V+  AA+ + ++ 
Sbjct: 64  AWVRRAAADALGQI------GDER--------AVEPLIKALKDEDGWVRQSAAVALGQI- 108

Query: 194 ECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE 253
               D   V        + K L ++++  + +      +L ++G    +++EPL+    +
Sbjct: 109 ---GDERAVE------PLIKALKDEDWFVRIA---AAFALGEIGD--ERAVEPLI----K 150

Query: 254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311
            L   D   R++AADAL  +          G       +E          R      L
Sbjct: 151 ALKDEDGWVRQSAADALGEI----------GGERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 73  SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132
            + ++  L+  L     D    V++ +   L    ++  E       + +  ++K LKD 
Sbjct: 48  DERAVEPLIKAL----KDEDAWVRRAAADALG---QIGDE-------RAVEPLIKALKDE 93

Query: 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192
           D  ++++   ++G +      G E          V+PL +A+ +++  V+  AA  + ++
Sbjct: 94  DGWVRQSAAVALGQI------GDERA--------VEPLIKALKDEDWFVRIAAAFALGEI 139

Query: 193 VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIH 252
                D   V        + K L +++   + S      +L ++G    +    + +   
Sbjct: 140 ----GDERAVE------PLIKALKDEDGWVRQS---AADALGEIGG--ERVRAAMEK--- 181

Query: 253 ECLGSTDWATRKAAADALSAL 273
               +     RK A + L   
Sbjct: 182 -LAETGTGFARKVAVNYLETH 201

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 15/234 (6%)

Query: 84  LYESSNDPKPAVKKESVRLLALVCELHS---ELTSTHVTKIISHIVKRL-KDSDSGMKEA 139
             E     K   + E++          +   + TS + + ++      + KD++      
Sbjct: 21  FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80

Query: 140 CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD- 198
              S+  +           +   V L   PL +   E+   V       +  + +     
Sbjct: 81  AAQSVELICDKL--KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138

Query: 199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVG-----SLSQVGAIAPQSLEPLLQSIHE 253
                 + +   I + + ++    +     +              +     + ++  + +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198

Query: 254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSM 307
            +  T  A R    ++ + L              TL  L+  +  KI+    ++
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTF---VKTLEHLDNLKRKKIEETVKTL 249

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 57/237 (24%)

Query: 75  ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS 134
           E + M +  L     D    V++ +   L    ++  E       + +  ++K LKD D+
Sbjct: 14  EKVEMYIKNL----QDDSYYVRRAAAYALG---KIGDE-------RAVEPLIKALKDEDA 59

Query: 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194
            ++ A  D++G +      G E          V+PL +A+ +++  V+  AA+ + ++  
Sbjct: 60  WVRRAAADALGQI------GDERA--------VEPLIKALKDEDGWVRQSAAVALGQI-- 103

Query: 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC 254
              D   V        + K L ++++  + +      +L ++G    +++EPL+    + 
Sbjct: 104 --GDERAVE------PLIKALKDEDWFVRIA---AAFALGEIGD--ERAVEPLI----KA 146

Query: 255 LGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311
           L   D   R++AADAL  +          G       +E          R      L
Sbjct: 147 LKDEDGWVRQSAADALGEI----------GGERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 73  SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132
            + ++  L+  L     D    V++ +   L    ++  E       + +  ++K LKD 
Sbjct: 43  DERAVEPLIKAL----KDEDAWVRRAAADALG---QIGDE-------RAVEPLIKALKDE 88

Query: 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192
           D  ++++   ++G +      G E          V+PL +A+ +++  V+  AA  + ++
Sbjct: 89  DGWVRQSAAVALGQI------GDERA--------VEPLIKALKDEDWFVRIAAAFALGEI 134

Query: 193 VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIH 252
                D   V        + K L +++   + S      +L ++G    +    + +   
Sbjct: 135 ----GDERAVE------PLIKALKDEDGWVRQS---AADALGEIGG--ERVRAAMEK--- 176

Query: 253 ECLGSTDWATRKAAADALSAL 273
               +     RK A + L   
Sbjct: 177 -LAETGTGFARKVAVNYLETH 196

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 30/145 (20%)

Query: 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASL 226
           + P    M ++NK V+   +  +++M + A +P           + + LSN+++  + + 
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFEP-----------LLESLSNEDWRIRGA- 61

Query: 227 LPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGAT 286
                 +        +++EPL+    + L       R  AA +L  +          G  
Sbjct: 62  --AAWIIGNFQD--ERAVEPLI----KLLEDDSGFVRSGAARSLEQI----------GGE 103

Query: 287 STLTVLEACRFDKIKPVRDSMNEAL 311
                +E          R      L
Sbjct: 104 RVRAAMEKLAETGTGFARKVAVNYL 128

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 43/284 (15%), Positives = 100/284 (35%), Gaps = 33/284 (11%)

Query: 25  NASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCL 84
                 S   ++ + ++   ++T LS   + +   +A+ ++   +Q    E L   +   
Sbjct: 268 ELLPKDSDYYNMLLKKLAPPLVTLLSG--EPEVQYVALRNINLIVQK-RPEILKQEIKVF 324

Query: 85  YESSNDPKPAVKKESVRLLALVCELHSELTSTH-VTKIISHIVKRLKDSDSGMKEACRDS 143
           +   NDP        V+L  L  ++   L S   + ++++ + +   + D         +
Sbjct: 325 FVKYNDP------IYVKLEKL--DIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRA 376

Query: 144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA 203
           IG  +                  V  L + +  +   V   A + +  +     +     
Sbjct: 377 IGRCA--------IKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN----K 424

Query: 204 FQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWAT 262
           ++ + A +C+ L +     A+A+++ +VG  ++    A + LE  L+  H+         
Sbjct: 425 YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQV---- 480

Query: 263 RKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP-VRD 305
            +     L+A+         +       VL     D   P +RD
Sbjct: 481 -QLT--LLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRD 521

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 55/245 (22%)

Query: 39  VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE 98
           ++ +        ++        + E        +    +P L+  + E+       ++ E
Sbjct: 101 MQEQLSATVKFRQIL-------SREHRPPIDVVIQAGVVPRLVEFMRENQP---EMLQLE 150

Query: 99  SVRLLALVCELHSELTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE 157
           +   L  +    S  T   V    +   ++ L      +KE    ++G+++        +
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG----DSTD 206

Query: 158 NNGTVVGLF-VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216
               V+    ++P+          +   A   ++ +  C    P   +  +         
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL--CRGKKPQPDWSVV--------- 255

Query: 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276
                                          L ++ + + S D  T   A  A+S L+  
Sbjct: 256 ----------------------------SQALPTLAKLIYSMDTETLVDACWAISYLSDG 287

Query: 277 SSNLV 281
               +
Sbjct: 288 PQEAI 292

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 153 NGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---VVAFQKL 207
           +  + NN  +   G+    + E +  ++   Q  A     K++    +PP   V++   +
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 208 CARICKLLSNQNFMAK----ASLLPVV--GSLSQVGAIAPQSLEPLLQSIHECLGSTDWA 261
            AR  + L  +         A +L  +  G+  Q   +      P+     E L S    
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF---IELLSSEFED 122

Query: 262 TRKAAADALSALALHSSNL 280
            ++ A  AL  +A  S+  
Sbjct: 123 VQEQAVWALGNIAGDSTMC 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	898
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-14
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 5e-14
 Identities = 35/252 (13%), Positives = 81/252 (32%), Gaps = 18/252 (7%)

Query: 78  PMLLNCLYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136
              ++ L E         +  +   L+  + +   +L      K++  I+K L+D +  +
Sbjct: 2   SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61

Query: 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196
           +      +G L               V   V  L   M+   + ++  +++ +  ++   
Sbjct: 62  QNLAVKCLGPLVSKVKE-------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 114

Query: 197 SDPPVVA--FQKLCARICKLLSNQ-----NFMAKASLLPVVGSLSQV-GAIAPQSLEPLL 248
                 +     +C +I   L++      +   +   L ++  +    G +       +L
Sbjct: 115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 174

Query: 249 QSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMN 308
             +   L S   A RK    AL  L +   N+V       L  L     +       +  
Sbjct: 175 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL--LSELSKNDSMSTTRTYI 232

Query: 309 EALQLWKKIAGK 320
           + +    + AG 
Sbjct: 233 QCIAAISRQAGH 244

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 14/127 (11%)

Query: 30  SSLSSHLAMVEMKQKILTSLSKLADRDTH---QIAIEDLEKTIQTLSQES-----LPMLL 81
             L            I+  +  ++    +      +  +    +   Q+      LP +L
Sbjct: 466 KKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL 525

Query: 82  NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR 141
                   DP   V+    + L  +  +     ST  +++   + K  +D D  +K   +
Sbjct: 526 RMA----GDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQ 579

Query: 142 DSIGSLS 148
           +++  LS
Sbjct: 580 EALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 31/205 (15%), Positives = 72/205 (35%), Gaps = 17/205 (8%)

Query: 74  QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133
           ++    LL  + E + D K  V+   +  + L+             K+ S  +  L D  
Sbjct: 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHV 454

Query: 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193
             ++EA   ++  L + +  GKE          +  +     + N   +     C+  + 
Sbjct: 455 YAIREAATSNLKKLVEKF--GKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508

Query: 194 ECASDPPVVAFQKLCARICKLLSNQNF---MAKASLLPVVGSLSQVGAIAPQSLEPLLQS 250
           E          + +   + ++  +         A  L  +G +     +  + ++P+L+ 
Sbjct: 509 EVCGQDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE-VKPILEK 565

Query: 251 IHECLGSTDWATRKAAADALSALAL 275
           +       D   +  A +AL+ L+L
Sbjct: 566 L---TQDQDVDVKYFAQEALTVLSL 587

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	898
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.85
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.66
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.63
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.61
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.58
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.49
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.49
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.24
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.15
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.1
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.05
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.85
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.82
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.75
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.73
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.71
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.71
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.42
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.37
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.34
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.27
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.89
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.59
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.55
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	88.57

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-18  Score=162.52  Aligned_cols=266  Identities=14%  Similarity=0.110  Sum_probs=225.3

Q ss_pred             HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHC-HHHH
Q ss_conf             99999999707--99258999999999997308999778999998611299990568999999999999821012-4569
Q 002638           42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHV  118 (898)
Q Consensus        42 K~rll~~L~KL--sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I-~P~L  118 (898)
                      -++++++|...  +|.+.++.|.+.|.++..  .| .+..||..|.....+.+..+|..|..+|++.+..++..+ .+..
T Consensus        10 l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~--~p-~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~   86 (888)
T d1qbkb_          10 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ--YP-DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT   86 (888)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTSTTTSTT--ST-TTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             9999999997639799999999999999773--99-89999999997457999899999999999999870023999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC--
Q ss_conf             999999997425999678999999999999997416666870337766999999982299869999999999999814--
Q 002638          119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--  196 (898)
Q Consensus       119 pkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a--  196 (898)
                      ..|...+++.|.|+++.||.+++.+++.++...   +.    ..||++++.|++.+.+++..++.+|+.||.++||+.  
T Consensus        87 ~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~---~~----~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~  159 (888)
T d1qbkb_          87 DFIKSECLNNIGDSSPLIRATVGILITTIASKG---EL----QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE  159 (888)
T ss_dssp             HHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTT---SS----CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999982998899999999999999871---82----11299999999986799989999999999999998688


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             ---99991248999999999712983464999999999998401-12712289999999996489999999999999999
Q 002638          197 ---SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA  272 (898)
Q Consensus       197 ---~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyle~lLp~L~e~LssdDW~vRKaA~EaLgs  272 (898)
                         .+.....++.++|+++..+++++..+|..++.+++.++... ..+..+++.+++.|+..+.++++.+|+.+|++|+.
T Consensus       160 ~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~  239 (888)
T d1qbkb_         160 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM  239 (888)
T ss_dssp             HHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             76077888799999999999863888899999999877788740388999999999988876079306779999999998


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999623679953989999998621198723389999999999984047
Q 002638          273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       273 LA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~~~  320 (898)
                      ++...++.+.||+..+++++..+..|..+   +++.+|+++|..++..
T Consensus       240 l~~~~~~~l~~~l~~i~~~~l~~~~~~~e---~v~~~a~ef~~~~~e~  284 (888)
T d1qbkb_         240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDE---NVALEACEFWLTLAEQ  284 (888)
T ss_dssp             TSCSCTTTTTTTTTTTTTTTTTTTTSSCH---HHHHHHHHHHCCCCSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHH
T ss_conf             99876788899888789999986289868---9999889999999971

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=6.8e-13  Score=118.27  Aligned_cols=267  Identities=13%  Similarity=0.106  Sum_probs=200.7

Q ss_pred             HHHHHHHHC-C--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH------
Q ss_conf             999999970-7--9925899999999999730899977899999861129999056899999999999982101------
Q 002638           43 QKILTSLSK-L--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------  113 (898)
Q Consensus        43 ~rll~~L~K-L--sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~------  113 (898)
                      .++.++|.. +  +|.+.++.|.+.|.++..+-.+ .+...|..+.. ..+.+..+|..|+.+|++....++..      
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~-~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~   81 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLI-DENTKLEGRILAALTLKNELVSKDSVKTQQFA   81 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHT-CTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999985598999999999999998744716-89999999997-69999899999999999985114502235677


Q ss_pred             ------C-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHH
Q ss_conf             ------2-45699999999974259996789999999999999974166668703377669999999822-998699999
Q 002638          114 ------T-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGA  185 (898)
Q Consensus       114 ------I-~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~e-qnk~VQ~gA  185 (898)
                            + ......|...++..|.++++.||.+++.+++.++......      ..||++++.|++.+.. .+..++.+|
T Consensus        82 ~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~------~~wpeli~~L~~~~~s~~~~~~~~~a  155 (861)
T d2bpta1          82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH------GAWPELMKIMVDNTGAEQPENVKRAS  155 (861)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------TCCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             666732999999999999999883998899999999999999976776------76388999999985699958999999


Q ss_pred             HHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHC-CC--CCCCCHHHHHHHHHHHHCC
Q ss_conf             999999998149999---12489999999997129--8346499999999999840-11--2712289999999996489
Q 002638          186 AMCMAKMVECASDPP---VVAFQKLCARICKLLSN--QNFMAKASLLPVVGSLSQV-GA--IAPQSLEPLLQSIHECLGS  257 (898)
Q Consensus       186 A~ALAkIIE~a~d~~---~~yL~~LlPRLlkLLks--~~fkaK~alLsaIgSLa~v-ga--~~~pyle~lLp~L~e~Lss  257 (898)
                      ..||..+||..+...   .+.+..+++.+++.+.+  ++..++..++.+++.++.. ..  ........+++.|.+++.+
T Consensus       156 l~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (861)
T d2bpta1         156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA  235 (861)
T ss_dssp             HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999883477888898899999999998733347899999999999999998767677666544777767988569


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999623679953989999998-621198723389999999999984047
Q 002638          258 TDWATRKAAADALSALALHSSNLVIDGATSTLTVLE-ACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       258 dDW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE-~~RfDKvKpVRDaA~eALelWK~I~~~  320 (898)
                      +++.+|+.++++|..|+...++.+.||+..++..+. ....+..+.+|.   .++++|..++..
T Consensus       236 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~---~~~~~l~~l~~~  296 (861)
T d2bpta1         236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS---MTVEFWSTICEE  296 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHH---HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHH
T ss_conf             9899999999999999887789999999989999999873275499999---999999999999

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.6e-12  Score=115.27  Aligned_cols=274  Identities=14%  Similarity=0.165  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHCHH---
Q ss_conf             999999999997079925899999999999730-899977899999861129999-056899999999999982101---
Q 002638           39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESSNDPK-PAVKKESVRLLALVCELHSEL---  113 (898)
Q Consensus        39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~ia~~-L~pd~Lp~lLs~L~es~~s~k-s~vRKeAIlLLG~iAeghgd~---  113 (898)
                      -.+|+.++.+|.. .+...++.++..+..++.. ++...+|-+++.|.+...+.+ ..+|..++.+|+.+++..+..   
T Consensus        94 ~~ik~~ll~~l~~-~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          94 NQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998839-988999999999999999767767638899999998569995899999999999999883477888


Q ss_pred             CHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             245699999999974259--996789999999999999974166668703377669999999822998699999999999
Q 002638          114 TSTHVTKIISHIVKRLKD--SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK  191 (898)
Q Consensus       114 I~P~LpkILs~IikrLkD--pDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAk  191 (898)
                      +.+++..|+..++..+..  ++..||.++..+++.+..++... . ........+++.|++++.+.++.++..++.||..
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  250 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-M-EREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-H-TSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             8988999999999987333478999999999999999987676-7-7666544777767988569989999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHCC-----------C-------CCCCCHHHHHHH--
Q ss_conf             99814999912489999999-99712983464999999999998401-----------1-------271228999999--
Q 002638          192 MVECASDPPVVAFQKLCARI-CKLLSNQNFMAKASLLPVVGSLSQVG-----------A-------IAPQSLEPLLQS--  250 (898)
Q Consensus       192 IIE~a~d~~~~yL~~LlPRL-lkLLks~~fkaK~alLsaIgSLa~vg-----------a-------~~~pyle~lLp~--  250 (898)
                      +++..+....+|+..++..+ ....++.+..++..++..+.+++...           .       ...+++..+++.  
T Consensus       251 i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~  330 (861)
T d2bpta1         251 IMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98877899999999899999998732754999999999999999999889999986203678999999999999999999


Q ss_pred             -------------------------------------------HHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHH
Q ss_conf             -------------------------------------------9996489999999999999999999623-67995398
Q 002638          251 -------------------------------------------IHECLGSTDWATRKAAADALSALALHSS-NLVIDGAT  286 (898)
Q Consensus       251 -------------------------------------------L~e~LssdDW~vRKaA~EaLgsLA~avg-e~L~Py~~  286 (898)
                                                                 +...+.+.+|..|.+++.+++.++.... ..+.+|..
T Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~  410 (861)
T d2bpta1         331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH  410 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99887302444014778888999988877603314665411113542001777888889989999884102666888789


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999986211987233899999999999
Q 002638          287 STLTVLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       287 siI~aLE~~RfDKvKpVRDaA~eALelWK  315 (898)
                      .++..+..+-.|..+.||+.+..++...-
T Consensus       411 ~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         411 QALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999988733762056668988999999

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-12  Score=115.15  Aligned_cols=268  Identities=14%  Similarity=0.166  Sum_probs=130.9

Q ss_pred             HHHHHHHCC--CCHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHH
Q ss_conf             999999707--9925899999999999730----8999778999998611299990568999999999999821012456
Q 002638           44 KILTSLSKL--ADRDTHQIAIEDLEKTIQT----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH  117 (898)
Q Consensus        44 rll~~L~KL--sDrDT~k~Aa~eLD~ia~~----L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~  117 (898)
                      ++..+|.|+  .|.|-|-+|+..|-+..+.    ++.+...-++..|+...+++++.||..|+++|+.++....+   +.
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQ   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HH
T ss_conf             699999866798872999999999998723014457688999999999996799879999999999999976768---66


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Q ss_conf             999999999742599967899999999999999741666--6870337766999999982-2998699999999999998
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE--ENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       118 LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~--e~~~~~~~~lLkPLleaL~-eqnk~VQ~gAA~ALAkIIE  194 (898)
                      ++.|+..++..+.+++..+|++++.++..+...+.....  .-.......++..|...+. ..+..++..|+.+|..++.
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999998568963265999999999999663200231127889999999998763477778999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-C-CCCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHH
Q ss_conf             149999124899999999971298346499999999999840-1-12712289999999996-48999999999999999
Q 002638          195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALS  271 (898)
Q Consensus       195 ~a~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~v-g-a~~~pyle~lLp~L~e~-LssdDW~vRKaA~EaLg  271 (898)
                      ..+....++...+++.+...|+++...+|..++.|++.++.. + ..+..    +++.+.+. ..+..+.+|+.++++|+
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~l~  236 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD----LIEHLLSELSKNDSMSTTRTYIQCIA  236 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT----HHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH----HHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             75676687799999999988089998999999999999998779987999----99999998705998899999999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99996236799539899999986211987233899999999999840
Q 002638          272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       272 sLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~  318 (898)
                      .|+...|..|.+|+..++..+..+-.+....+|+.+.++++.+...+
T Consensus       237 ~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         237 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99987615467779999999998825861777899999999999867

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.1e-13  Score=120.96  Aligned_cols=255  Identities=13%  Similarity=0.141  Sum_probs=198.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHH
Q ss_conf             92589999999999973089997---------789999986112-99990568999999999999821012456999999
Q 002638           54 DRDTHQIAIEDLEKTIQTLSQES---------LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIIS  123 (898)
Q Consensus        54 DrDT~k~Aa~eLD~ia~~L~pd~---------Lp~lLs~L~es~-~s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs  123 (898)
                      +.+.+..+...|..++..++...         ...++..+.... ...++.+|.+++.+|+.++..++..+.++.+.++.
T Consensus        96 ~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~  175 (1207)
T d1u6gc_          96 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILT  175 (1207)
T ss_dssp             SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             63265999999999999663200231127889999999998763477778999999999999998756766877999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             9997425999678999999999999997416666870337766999999982-299869999999999999814999912
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVV  202 (898)
Q Consensus       124 ~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~-eqnk~VQ~gAA~ALAkIIE~a~d~~~~  202 (898)
                      .++..|.++.+.||..++.+++.++.++-+       ..+..++..++..+. +.+..+..+++.||..++...+....+
T Consensus       176 ~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~-------~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  248 (1207)
T d1u6gc_         176 CLLPQLTSPRLAVRKRTIIALGHLVMSCGN-------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE  248 (1207)
T ss_dssp             HHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             999880899989999999999999987799-------8799999999998705998899999999999999876154677


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHH--------------------------
Q ss_conf             48999999999712983464999999999998401-127122899999999964--------------------------
Q 002638          203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECL--------------------------  255 (898)
Q Consensus       203 yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyle~lLp~L~e~L--------------------------  255 (898)
                      |++.++|-+++.++..+..+|..++.++.+++... ..+.+|+..+++.+..++                          
T Consensus       249 ~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~  328 (1207)
T d1u6gc_         249 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD  328 (1207)
T ss_dssp             SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf             79999999998825861777899999999999867465445599999999998740730003467887765554011013


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             -----------899999999999999999996236799539899999986211987233899999999999
Q 002638          256 -----------GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       256 -----------ssdDW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK  315 (898)
                                 .+..|.+|+.|+++|..++...++.+.++...++..+...-.|..+.||..+..++....
T Consensus       329 ~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~  399 (1207)
T d1u6gc_         329 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  399 (1207)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             56678887522013389999999999868988899999999999999999845985489999999999999

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.8e-12  Score=110.75  Aligned_cols=259  Identities=12%  Similarity=0.098  Sum_probs=154.4

Q ss_pred             HHHHHHHHHCC-CCHH-HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH-CHHH
Q ss_conf             99999999707-9925-8999999999997308-99977899999861129999056899999999999982101-2456
Q 002638           42 KQKILTSLSKL-ADRD-THQIAIEDLEKTIQTL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTH  117 (898)
Q Consensus        42 K~rll~~L~KL-sDrD-T~k~Aa~eLD~ia~~L-~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~-I~P~  117 (898)
                      +..++..|.++ .|.| ....+++.|-.++..+ .++....+++.+.....++++.+|..++.+|+.++...... +..+
T Consensus        47 ~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~  126 (588)
T d1b3ua_          47 RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH  126 (588)
T ss_dssp             HHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99999999998658689999999999999987487468999999999980699889999999999999986798889999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999974259996789999999999999974166668703377669999999822998699999999999998149
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (898)
Q Consensus       118 LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~  197 (898)
                         +++.+.+...+....+|..++..++.+....   .    ......+++.+...+.+.++.|...|+.++..+++...
T Consensus       127 ---l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~---~----~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~  196 (588)
T d1b3ua_         127 ---FVPLVKRLAGGDWFTSRTSACGLFSVCYPRV---S----SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE  196 (588)
T ss_dssp             ---HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS---C----HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC
T ss_pred             ---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             ---9999999864631479999999999999986---1----89999999999998516998999999999998998715


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             99912489999999997129834649999999999984011271228999999999648999999999999999999962
Q 002638          198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS  277 (898)
Q Consensus       198 d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vga~~~pyle~lLp~L~e~LssdDW~vRKaA~EaLgsLA~av  277 (898)
                      ..  .....|+|.+..+++++...+|..++.+++.++..- ....+...+++.+..++.+.+|.+|.+++++|+.++...
T Consensus       197 ~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~-~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~  273 (588)
T d1b3ua_         197 LD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL-PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             HH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS-CHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             78--779999999999744885246789998887763058-889999999999997202356888899998578888776


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             36799539899999986211987233899999999999
Q 002638          278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       278 ge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK  315 (898)
                      +..+  ....++..+...-.|....||..+..++..+-
T Consensus       274 ~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         274 GPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             CHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             6534--34441689999872133577799998799999

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-11  Score=104.94  Aligned_cols=263  Identities=10%  Similarity=0.079  Sum_probs=197.2

Q ss_pred             HHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHCH-------
Q ss_conf             999999707--99258999999999997308999778999998611--2999905689999999999998210-------
Q 002638           44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES--SNDPKPAVKKESVRLLALVCELHSE-------  112 (898)
Q Consensus        44 rll~~L~KL--sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es--~~s~ks~vRKeAIlLLG~iAeghgd-------  112 (898)
                      +++++|..+  +|.+.++.|-+.|.++..+    ..|.|+.+|.+-  ..+.+..+|..|+.+|++....+..       
T Consensus         2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~   77 (876)
T d1qgra_           2 ELITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (876)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             789999988592989999999999999860----7157999999998448999999999999999875305620015553


Q ss_pred             ----HC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC--CHHHHHHH
Q ss_conf             ----12-456999999999742599967899999999999999741666687033776699999998229--98699999
Q 002638          113 ----LT-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGA  185 (898)
Q Consensus       113 ----~I-~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eq--nk~VQ~gA  185 (898)
                          .+ ......|...++..|.++++. |..++.+++.++..-...      ..|+++++-|++.+.++  +..+..++
T Consensus        78 ~~~~~i~~~~k~~ik~~ll~~l~~~~~~-~~~~a~~i~~i~~~~~p~------~~Wpeli~~L~~~l~~~~~~~~~~~~~  150 (876)
T d1qgra_          78 QRWLAIDANARREVKNYVLHTLGTETYR-PSSASQCVAGIACAEIPV------NQWPELIPQLVANVTNPNSTEHMKEST  150 (876)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTCCSS-SCHHHHHHHHHHHHHGGG------TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             0333599999999999999986697088-999999999999987773------463899999999865999968999999


Q ss_pred             HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCC-C--CCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999999998149-999124899999999971298--3464999999999998401-1--271228999999999648999
Q 002638          186 AMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG-A--IAPQSLEPLLQSIHECLGSTD  259 (898)
Q Consensus       186 A~ALAkIIE~a~-d~~~~yL~~LlPRLlkLLks~--~fkaK~alLsaIgSLa~vg-a--~~~pyle~lLp~L~e~LssdD  259 (898)
                      +.||..+++... +....+++.+++.++..+.+.  +..++..++.++..+.... .  ........+++.+...+.+++
T Consensus       151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  230 (876)
T d1qgra_         151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999877788778889999999999871757457999999999987888731012577899999999999825998


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999623679953989999-998621198723389999999999984047
Q 002638          260 WATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       260 W~vRKaA~EaLgsLA~avge~L~Py~~siI~-aLE~~RfDKvKpVRDaA~eALelWK~I~~~  320 (898)
                      +.+|+.++++|..++...++.+.+|+...+. .+..+..+..+   +.+..++++|..++..
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~  289 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID---EVALQGIEFWSNVCDE  289 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999969998887887999999987345338---9999999999998888

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-11  Score=105.53  Aligned_cols=250  Identities=14%  Similarity=0.097  Sum_probs=168.8

Q ss_pred             HHCC--CCHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHH
Q ss_conf             9707--992589999999999973089997-7899999861129999056899999999999982101245699999999
Q 002638           49 LSKL--ADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHI  125 (898)
Q Consensus        49 L~KL--sDrDT~k~Aa~eLD~ia~~L~pd~-Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs~I  125 (898)
                      +..|  .|-..+..|+..|..++..++++. ...++++|.+...+ +..++.+....|+.+++..+  -..|...+++.+
T Consensus        16 ~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~-~~ev~~~~~~~l~~~~~~~~--~~~~~~~ll~~l   92 (588)
T d1b3ua_          16 IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD-EDEVLLALAEQLGTFTTLVG--GPEYVHCLLPPL   92 (588)
T ss_dssp             HHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC-CHHHHHHHHHHHTTCSGGGT--SGGGGGGGHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_conf             998669998999999999999999849174599999999998658-68999999999999998748--746899999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             97425999678999999999999997416666870337766999999982-29986999999999999981499991248
Q 002638          126 VKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAF  204 (898)
Q Consensus       126 ikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~-eqnk~VQ~gAA~ALAkIIE~a~d~~~~yL  204 (898)
                      ...+.+.++.||.+++.+++.++..+..       ......+.|++..|. +.....+..|+..+..+...   ......
T Consensus        93 ~~l~~~~~~~Vr~~a~~~l~~i~~~~~~-------~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~---~~~~~~  162 (588)
T d1b3ua_          93 ESLATVEETVVRDKAVESLRAISHEHSP-------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR---VSSAVK  162 (588)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHTTSCH-------HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT---SCHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHH
T ss_conf             9980699889999999999999986798-------889999999999986463147999999999999998---618999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             999999999712983464999999999998401127122-8999999999648999999999999999999962367995
Q 002638          205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS-LEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVID  283 (898)
Q Consensus       205 ~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vga~~~py-le~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avge~L~P  283 (898)
                      ..+.+.+.++++++++.+|..+..+++.++..-  ...+ -..+++.+.+++.+++|.+|..|+++++.++...++.  .
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~  238 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH--H
T ss_conf             999999999851699899999999999899871--578779999999999744885246789998887763058889--9


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             39899999986211987233899999999999
Q 002638          284 GATSTLTVLEACRFDKIKPVRDSMNEALQLWK  315 (898)
Q Consensus       284 y~~siI~aLE~~RfDKvKpVRDaA~eALelWK  315 (898)
                      +...++..+...-.|+...||..+.+++.-..
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~  270 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQ  270 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999997202356888899998578888

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-20  Score=178.76  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             89999999999973089997789999986112999905689999999999998210124569999999997425999678
Q 002638           57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM  136 (898)
Q Consensus        57 T~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs~IikrLkDpDs~V  136 (898)
                      .+++|...|+.++..++.+.++.+++.+.+...+.+|..|++++++||.+++++.+.+.||++.++++++..|.|+++.|
T Consensus       373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~V  452 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV  452 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHH
T ss_conf             99999998766765129999999999988751220568999999986435555787742120355679998426998999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99999999999999741666687033776699999998229986999999999999981499991248999999999712
Q 002638          137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS  216 (898)
Q Consensus       137 R~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~yL~~LlPRLlkLLk  216 (898)
                      |.++++++|+++.++....   ...++..+++.|+..+.+.++.||.+||.||..++|.+.....+|++.+++.+.++++
T Consensus       453 r~~a~~~l~~~~~~~~~~~---~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~  529 (888)
T d1qbkb_         453 RSITCWTLSRYAHWVVSQP---PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS  529 (888)
T ss_dssp             HHHHHHHHHHTHHHHHSSC---HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999866541---5655455589999884289878999899999999987553113579999999999986


Q ss_pred             CCCHHHHHHHHHHHHHHHH-CCC--CCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9834649999999999984-011--2712289999999996489--999999999999999999623679953989999
Q 002638          217 NQNFMAKASLLPVVGSLSQ-VGA--IAPQSLEPLLQSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLT  290 (898)
Q Consensus       217 s~~fkaK~alLsaIgSLa~-vga--~~~pyle~lLp~L~e~Lss--dDW~vRKaA~EaLgsLA~avge~L~Py~~siI~  290 (898)
                      ....+.+..+++++++++. ++.  ..++|++.+++.+.+....  ++-..+..+.++|..++...++.+.||...++.
T Consensus       530 ~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~  608 (888)
T d1qbkb_         530 KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ  608 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0037799999999999998623101336799999999999997512106889999999999999867877656999999

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.8e-11  Score=103.30  Aligned_cols=275  Identities=14%  Similarity=0.120  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHC-
Q ss_conf             769999999999997079925899999999999730-89997789999986112--99990568999999999999821-
Q 002638           36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHS-  111 (898)
Q Consensus        36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~ia~~-L~pd~Lp~lLs~L~es~--~s~ks~vRKeAIlLLG~iAeghg-  111 (898)
                      ..-..+|+.++.+|.. .+ ..++.++..+-.++.. ++.+..|.+++.|.+..  ++....+|..++.+|+.+++... 
T Consensus        86 ~~k~~ik~~ll~~l~~-~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~  163 (876)
T d1qgra_          86 NARREVKNYVLHTLGT-ET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP  163 (876)
T ss_dssp             HHHHHHHHHHHHHTTT-CC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf             9999999999998669-70-889999999999999877734638999999998659999689999999999999987778


Q ss_pred             HHCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             0124569999999997425999--67899999999999999741666687033776699999998229986999999999
Q 002638          112 ELTSTHVTKIISHIVKRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM  189 (898)
Q Consensus       112 d~I~P~LpkILs~IikrLkDpD--s~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~AL  189 (898)
                      +.+.++++.|++.++..|.+.+  ..||.++..++..+...+....  ........+++.+...+..++..++..++.||
T Consensus       164 ~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l  241 (876)
T d1qgra_         164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQVVCEATQCPDTRVRVAALQNL  241 (876)
T ss_dssp             HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH--TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             8778889999999999871757457999999999987888731012--57789999999999982599889999999999


Q ss_pred             HHHHHHCCCCCCHHHHH-HHHHHHHHHCCCCHHHHHH-------------------------------------------
Q ss_conf             99998149999124899-9999999712983464999-------------------------------------------
Q 002638          190 AKMVECASDPPVVAFQK-LCARICKLLSNQNFMAKAS-------------------------------------------  225 (898)
Q Consensus       190 AkIIE~a~d~~~~yL~~-LlPRLlkLLks~~fkaK~a-------------------------------------------  225 (898)
                      ..+++..++...+|+.. +.+.+...+++.....+..                                           
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (876)
T d1qgra_         242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY  321 (876)
T ss_dssp             HHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999969998887887999999987345338999999999999888899999873378875316999999999988998


Q ss_pred             --------------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-
Q ss_conf             --------------------------99999999840112712289999999996489999999999999999999623-
Q 002638          226 --------------------------LLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-  278 (898)
Q Consensus       226 --------------------------lLsaIgSLa~vga~~~pyle~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avg-  278 (898)
                                                +..++..++..  .....++.+++.+.+.+.+.+|..|.+++.+++.++.... 
T Consensus       322 l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~  399 (876)
T d1qgra_         322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC--CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH--HGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8776578887430023543313999999999999987--36665355678999860251378889999988766643229


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             67995398999999862119872338999999999998
Q 002638          279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (898)
Q Consensus       279 e~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~  316 (898)
                      ..+.++...++..+...-.|..+.||..+..++...-.
T Consensus       400 ~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             88989999999999986157860899999988999999

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.6e-11  Score=100.88  Aligned_cols=264  Identities=9%  Similarity=0.061  Sum_probs=197.2

Q ss_pred             HHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH----------
Q ss_conf             99999707--992589999999999973089997789999986112999905689999999999998210----------
Q 002638           45 ILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE----------  112 (898)
Q Consensus        45 ll~~L~KL--sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd----------  112 (898)
                      ++++|..+  +|.+.++.|.+.|+++..+ ++..+...|..+.. ..+.+..+|..|..+|++....+..          
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~-~~~~~~~~l~~il~-~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~   79 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   79 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             89899988594999999999999998752-83589999999984-48999899999999999886326711116776411


Q ss_pred             --HCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q ss_conf             --1245699999999974259996789999999999999974166668703377669999999822--998699999999
Q 002638          113 --LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMC  188 (898)
Q Consensus       113 --~I~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~e--qnk~VQ~gAA~A  188 (898)
                        ........|...++..+.++++.+|.+ +.+++.++......      ..|+.+++.|++.+.+  .+..+..+++.+
T Consensus        80 ~~l~~~~~~~i~~~ll~~~~~~~~~~~~~-~~~~~~i~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  152 (458)
T d1ibrb_          80 LAIDANARREVKNYVLQTLGTETYRPSSA-SQCVAGIACAEIPV------NQWPELIPQLVANVTNPNSTEHMKESTLEA  152 (458)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTCCCSSSCSH-HHHHHHHHHHHGGG------TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHCCC------CCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             14999999999999986147982899999-99999999986780------127510578999988203217788889988


Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf             999998149-999124899999999971298--3464999999999998401---1271228999999999648999999
Q 002638          189 MAKMVECAS-DPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECLGSTDWAT  262 (898)
Q Consensus       189 LAkIIE~a~-d~~~~yL~~LlPRLlkLLks~--~fkaK~alLsaIgSLa~vg---a~~~pyle~lLp~L~e~LssdDW~v  262 (898)
                      |..+++... .....+++.+++.+...+.+.  +..++..++.+++.++...   .........+++.+...+.++++.+
T Consensus       153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (458)
T d1ibrb_         153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  232 (458)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             88987631410002338899999999861545679999999999999988613245667777776766887725998999


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999996236799539899999-98621198723389999999999984047
Q 002638          263 RKAAADALSALALHSSNLVIDGATSTLTV-LEACRFDKIKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       263 RKaA~EaLgsLA~avge~L~Py~~siI~a-LE~~RfDKvKpVRDaA~eALelWK~I~~~  320 (898)
                      |+.++++|..++...++.+.||+..++.. +..+..+..+   +....++++|..++..
T Consensus       233 ~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~a~~~l~~i~~~  288 (458)
T d1ibrb_         233 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID---EVALQGIEFWSNVCDE  288 (458)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHH
T ss_conf             9999999999998719999988877899999998435459---9999999999998998

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-09  Score=90.72  Aligned_cols=221  Identities=14%  Similarity=0.139  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHCHH-CHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             9056899999999999982101-24569999999997425999--67899999999999999741666687033776699
Q 002638           92 KPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK  168 (898)
Q Consensus        92 ks~vRKeAIlLLG~iAeghgd~-I~P~LpkILs~IikrLkDpD--s~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLk  168 (898)
                      .+..|+.++.+++.+++..... ..+++..|++.++..|.+.+  ..||.+|..+++.+........  ......+.+++
T Consensus       142 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~  219 (458)
T d1ibrb_         142 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQ  219 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH--TSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf             1778888998888987631410002338899999999861545679999999999999988613245--66777777676


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH---------------------------------------------
Q ss_conf             99999822998699999999999998149999124---------------------------------------------
Q 002638          169 PLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA---------------------------------------------  203 (898)
Q Consensus       169 PLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~y---------------------------------------------  203 (898)
                      .|...+.+.++.+...++.||..+++..+....+|                                             
T Consensus       220 ~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~  299 (458)
T d1ibrb_         220 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA  299 (458)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68877259989999999999999998719999988877899999998435459999999999999899889999850367


Q ss_pred             ------------------HHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             ------------------899999999971298-------3464999999999998401127122899999999964899
Q 002638          204 ------------------FQKLCARICKLLSNQ-------NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST  258 (898)
Q Consensus       204 ------------------L~~LlPRLlkLLks~-------~fkaK~alLsaIgSLa~vga~~~pyle~lLp~L~e~Lssd  258 (898)
                                        ++.++|.+...+...       .+..+.++..++..++...  ....++.+++.+.+.+.++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~l~~~i~~~l~s~  377 (458)
T d1ibrb_         300 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNP  377 (458)
T ss_dssp             TCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCC
T ss_conf             87641899999999998899872667764000102101122339999999999998755--1755667899999985699


Q ss_pred             CHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999623-67995398999999862119872338999999999998
Q 002638          259 DWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (898)
Q Consensus       259 DW~vRKaA~EaLgsLA~avg-e~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~  316 (898)
                      +|.+|.+|+.+|+.|+.... +.+.+|+.+++..+-.+-.|..+.||.+|..++.-+..
T Consensus       378 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         378 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             98999999999999997547767898899999999988489989999999999999999

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.3e-07  Score=75.54  Aligned_cols=267  Identities=9%  Similarity=0.036  Sum_probs=183.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH------C-H
Q ss_conf             99999997079925899999999999730899977899999861129999056899999999999982101------2-4
Q 002638           43 QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------T-S  115 (898)
Q Consensus        43 ~rll~~L~KLsDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~------I-~  115 (898)
                      ..+.++|...-|.++++.|-+.|.++-.  .| .+..+|-.+... .+....+|..|+..|++.+..|+..      + .
T Consensus         5 ~~l~~ll~~s~~~~~~k~Ae~~L~~~~~--~p-~f~~~L~~i~~~-~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~   80 (959)
T d1wa5c_           5 ETVAKFLAESVIASTAKTSERNLRQLET--QD-GFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA   80 (959)
T ss_dssp             HHHHHHHHHTTSGGGHHHHHHHHHHHHT--ST-THHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             9999999878996899999999999770--99-899999999835-8999999999999999999985564344579999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             56999999999742599967899999999999999741666687033776699999998229986999999999999981
Q 002638          116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       116 P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~  195 (898)
                      .-...|...++..|.+++..||...+.+++.++.+-   ..    ..||.+++-|++.+..++...+.++..+|..+++.
T Consensus        81 e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d---~p----~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~  153 (959)
T d1wa5c_          81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSD---FP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR  153 (959)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---ST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---CC----CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999983796999999999999999876---84----02579999999985799999999999999999999


Q ss_pred             CCCCCC---------HHHHHHHHHHHHHHCC--------CCHHHH-HHHHHH-------HHHHHHCC--CCCCCCHHHHH
Q ss_conf             499991---------2489999999997129--------834649-999999-------99998401--12712289999
Q 002638          196 ASDPPV---------VAFQKLCARICKLLSN--------QNFMAK-ASLLPV-------VGSLSQVG--AIAPQSLEPLL  248 (898)
Q Consensus       196 a~d~~~---------~yL~~LlPRLlkLLks--------~~fkaK-~alLsa-------IgSLa~vg--a~~~pyle~lL  248 (898)
                      ......         ..++.+.+.+..++..        ...... ..++..       +.++....  ..+..++..++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (959)
T d1wa5c_         154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGM  233 (959)
T ss_dssp             GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             87651325477679999999999999999999999763524199999999999999999999775204699999999999


Q ss_pred             HHHHHHHCCC---------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHH-CCCCHHHHHHHHHHH
Q ss_conf             9999964899---------------99999999999999999623679953989999998-621-198723389999999
Q 002638          249 QSIHECLGST---------------DWATRKAAADALSALALHSSNLVIDGATSTLTVLE-ACR-FDKIKPVRDSMNEAL  311 (898)
Q Consensus       249 p~L~e~Lssd---------------DW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE-~~R-fDKvKpVRDaA~eAL  311 (898)
                      ..+..++...               .+.+|+..+.++..+....++.+.||...++..+. .+. ......-...+.+++
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  313 (959)
T d1wa5c_         234 GIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSL  313 (959)
T ss_dssp             HHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             99999980055313580145550289999999999999999985898999999999999999998833555289999999


Q ss_pred             HHHHHHHCC
Q ss_conf             999984047
Q 002638          312 QLWKKIAGK  320 (898)
Q Consensus       312 elWK~I~~~  320 (898)
                      ++|..+...
T Consensus       314 ~~l~~~~~~  322 (959)
T d1wa5c_         314 SFLTAVTRI  322 (959)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
T ss_conf             999999851

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.8e-07  Score=72.84  Aligned_cols=281  Identities=11%  Similarity=0.070  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH--
Q ss_conf             576999999999999707992589999999999973089997789999986112999905689999999999998210--
Q 002638           35 HLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE--  112 (898)
Q Consensus        35 ~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd--  112 (898)
                      ...-..+|+.++++|.. +++..+.+.+..+..|+..-.|+..|.+++.|.+..++.++..+..++.+|..+++.+..  
T Consensus        80 ~e~k~~Ik~~ll~~l~~-~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~  158 (959)
T d1wa5c_          80 ANNVELIKKEIVPLMIS-LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (959)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999837-96999999999999999876840257999999998579999999999999999999987651


Q ss_pred             --------------HCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-------C-CCCCCCHHHHHHHHHH
Q ss_conf             --------------12456999999999742599967899999999999999741-------6-6668703377669999
Q 002638          113 --------------LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN-------G-KEENNGTVVGLFVKPL  170 (898)
Q Consensus       113 --------------~I~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik-------~-~~e~~~~~~~~lLkPL  170 (898)
                                    .+.+.+..++..+...+....  ...+....+......+.+       . ..+.-.+.+..++.-+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (959)
T d1wa5c_         159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANE--NNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF  236 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             32547767999999999999999999999976352--4199999999999999999999775204699999999999999


Q ss_pred             HHHHHCCC---------------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----CCH-HHHHHHHHHH
Q ss_conf             99982299---------------869999999999999814999912489999999997129----834-6499999999
Q 002638          171 FEAMMEQN---------------KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN----QNF-MAKASLLPVV  230 (898)
Q Consensus       171 leaL~eqn---------------k~VQ~gAA~ALAkIIE~a~d~~~~yL~~LlPRLlkLLks----~~f-kaK~alLsaI  230 (898)
                      ...+....               +.++...+.++..+++..++...++++.++..+..++..    ..+ .....++..+
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l  316 (959)
T d1wa5c_         237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL  316 (959)
T ss_dssp             HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99980055313580145550289999999999999999985898999999999999999998833555289999999999


Q ss_pred             HHHHHCC---CCC--CCCHHHHHHHHH-HHH-----------------------CCCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9998401---127--122899999999-964-----------------------89999999999999999999623679
Q 002638          231 GSLSQVG---AIA--PQSLEPLLQSIH-ECL-----------------------GSTDWATRKAAADALSALALHSSNLV  281 (898)
Q Consensus       231 gSLa~vg---a~~--~pyle~lLp~L~-e~L-----------------------ssdDW~vRKaA~EaLgsLA~avge~L  281 (898)
                      ..++...   ..+  .+++..++..+. .++                       .++.+..|.++.+.+..++...++.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~  396 (959)
T d1wa5c_         317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV  396 (959)
T ss_dssp             HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99985178998872046788899999998856787789877506387778774000002177899999999997534112


Q ss_pred             HHHHHH-HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             953989-9999986211--987233899999999999840
Q 002638          282 IDGATS-TLTVLEACRF--DKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       282 ~Py~~s-iI~aLE~~Rf--DKvKpVRDaA~eALelWK~I~  318 (898)
                      .+..-. +...+..+..  +.....|+++..++.......
T Consensus       397 ~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~  436 (959)
T d1wa5c_         397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING  436 (959)
T ss_dssp             HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6889999999997514687621677889999999998631

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.1e-07  Score=76.16  Aligned_cols=258  Identities=11%  Similarity=0.080  Sum_probs=171.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCC-CC--------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHH-HH
Q ss_conf             0799258999999999997308-99--------97789999986112999905689999999999998210124569-99
Q 002638           51 KLADRDTHQIAIEDLEKTIQTL-SQ--------ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV-TK  120 (898)
Q Consensus        51 KLsDrDT~k~Aa~eLD~ia~~L-~p--------d~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~L-pk  120 (898)
                      ...|.+.+..|+..+.++...- .+        ..++.++..+.   .+.+..++.++..+|++++.+..+...... ..
T Consensus        86 ~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~---~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g  162 (503)
T d1wa5b_          86 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR---ENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD  162 (503)
T ss_dssp             SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS---TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             49999999999999999974078843999998798499999871---799999999999999999749888779999678


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-
Q ss_conf             999999742599967899999999999999741666687033-776699999998229986999999999999981499-
Q 002638          121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV-VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-  198 (898)
Q Consensus       121 ILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~-~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d-  198 (898)
                      +++.++..|.+++..|+..|+++++.|+.......    ... -..++++|+..+.+.+..++..++.+|..++..... 
T Consensus       163 ~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r----~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~  238 (503)
T d1wa5b_         163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR----DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ  238 (503)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH----HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             74789998559971589999999999854118999----98874135563012045688899999999999984687420


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             991248999999999712983464999999999998401-1271228-99999999964899999999999999999996
Q 002638          199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALH  276 (898)
Q Consensus       199 ~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyl-e~lLp~L~e~LssdDW~vRKaA~EaLgsLA~a  276 (898)
                      ........++|.|.+++.+.+..++..++.++..++... ......+ ..+++.|..++.+++..++..|+.+|+.|+..
T Consensus       239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             47999999999999872356389999999998753227711110011223311101102578636445677777778778


Q ss_pred             CCHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             23679953-9899999986211987233899999999999840
Q 002638          277 SSNLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       277 vge~L~Py-~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~  318 (898)
                      .++...-. ...++.++..+-....+.+|..+   +-....++
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~---~~~l~nl~  358 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEA---CWTISNIT  358 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH---HHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH---HHHHHHHH
T ss_conf             88878763123409999999639978889999---87788886

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.2e-06  Score=67.72  Aligned_cols=250  Identities=13%  Similarity=0.154  Sum_probs=165.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHH-HHHHHHH
Q ss_conf             992589999999999973089--------9977899999861129999056899999999999982101245-6999999
Q 002638           53 ADRDTHQIAIEDLEKTIQTLS--------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST-HVTKIIS  123 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~ia~~L~--------pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P-~LpkILs  123 (898)
                      .+.+.+..|+..|-.++..-+        ...++.++..+.    +.+..++..++.+|++++....+.-.- .-..+++
T Consensus       132 ~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~----s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~  207 (503)
T d1wa5b_         132 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME  207 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999997498887799996787478999855----99715899999999998541189999887413556


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             99974259996789999999999999974166668703377669999999822998699999999999998149999124
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA  203 (898)
Q Consensus       124 ~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~y  203 (898)
                      .++..+.+.++.++..+++++..++... .+..  .......+++.|...+...+..++..++.||..+++...+....+
T Consensus       208 ~L~~ll~~~~~~~~~~~~~~l~nl~~~~-~~~~--~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~  284 (503)
T d1wa5b_         208 PILGLFNSNKPSLIRTATWTLSNLCRGK-KPQP--DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV  284 (503)
T ss_dssp             HHHHGGGSCCHHHHHHHHHHHHHHHCCS-SSCC--CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             3012045688899999999999984687-4204--799999999999987235638999999999875322771111001


Q ss_pred             HH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             89-99999999712983464999999999998401-1271228-999999999648999999999999999999962367
Q 002638          204 FQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNL  280 (898)
Q Consensus       204 L~-~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyl-e~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avge~  280 (898)
                      ++ .++++++.++.+++..++..++.+++.++... ......+ ..+++.|..++.+.+..+|+.++-+|+.|+..-++.
T Consensus       285 ~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~  364 (503)
T d1wa5b_         285 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ  364 (503)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf             12233111011025786364456777777787788887876312340999999963997888999987788886146988


Q ss_pred             HHHH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9953-----98999999862119872338999999999
Q 002638          281 VIDG-----ATSTLTVLEACRFDKIKPVRDSMNEALQL  313 (898)
Q Consensus       281 L~Py-----~~siI~aLE~~RfDKvKpVRDaA~eALel  313 (898)
                      ....     +..++..+...    ...|+..+..++..
T Consensus       365 ~~~i~~~~~l~~li~~l~~~----~~~v~~~a~~~l~n  398 (503)
T d1wa5b_         365 IQAVIDANLIPPLVKLLEVA----EYKTKKEACWAISN  398 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHCCCC----CHHHHHHHHHHHHH
T ss_conf             89999714652367760268----73689999999999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2.1e-06  Score=65.82  Aligned_cols=260  Identities=13%  Similarity=0.116  Sum_probs=165.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHH-HHH
Q ss_conf             707992589999999999973089---------9977899999861129999056899999999999982101245-699
Q 002638           50 SKLADRDTHQIAIEDLEKTIQTLS---------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST-HVT  119 (898)
Q Consensus        50 ~KLsDrDT~k~Aa~eLD~ia~~L~---------pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P-~Lp  119 (898)
                      -+.+|.+.+..|+..|.++...-.         ...++.++.+|.   .+.++.+|..+..+|..++....+.... .-.
T Consensus        22 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~   98 (434)
T d1q1sc_          22 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIASGTSEQTKAVVDG   98 (434)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT---CGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             769899999999999999863799832999998889999999874---69988999999999999863985510476644


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHH
Q ss_conf             9999999742599967899999999999999741666687033776699999998229-----98699999999999998
Q 002638          120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-----NKGVQSGAAMCMAKMVE  194 (898)
Q Consensus       120 kILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eq-----nk~VQ~gAA~ALAkIIE  194 (898)
                      .+++.++..|.+++..++..|+++++.++..-.....   .-.-...+.+|+..+...     .......++.++..++.
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~---~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  175 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD---LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  175 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6315666403568799999999999988500168999---9998630058999987223210018999999999988864


Q ss_pred             HCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             1499-991248999999999712983464999999999998401-12-71228999999999648999999999999999
Q 002638          195 CASD-PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AI-APQSLEPLLQSIHECLGSTDWATRKAAADALS  271 (898)
Q Consensus       195 ~a~d-~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~-~~pyle~lLp~L~e~LssdDW~vRKaA~EaLg  271 (898)
                      .... ....+...++|.+..++++++..++..++.++..++... .. ..-+...+++.|.+++.+++..++..++.+|+
T Consensus       176 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~  255 (434)
T d1q1sc_         176 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  255 (434)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHH
T ss_conf             26422114436569999999985244201256776640220123456777763154201000023430655402122135


Q ss_pred             HHHHHCCHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999962367995-39899999986211987233899999999999840
Q 002638          272 ALALHSSNLVID-GATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA  318 (898)
Q Consensus       272 sLA~avge~L~P-y~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~  318 (898)
                      .++....+.... ....++..+...-.+..+.||..   ++.....++
T Consensus       256 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~---a~~~L~~l~  300 (434)
T d1q1sc_         256 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE---ATWTMSNIT  300 (434)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH---HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHH---HHHHHHHHC
T ss_conf             677666677899985256405777613641466688---887886520

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.2e-05  Score=59.67  Aligned_cols=245  Identities=10%  Similarity=-0.006  Sum_probs=112.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHH-HHHHH
Q ss_conf             99258999999999997308--------9997789999986112999905689999999999998210124569-99999
Q 002638           53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV-TKIIS  123 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~ia~~L--------~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~L-pkILs  123 (898)
                      .|...+..|+..|..++..-        .++.++.++..|..   ..++..++.+..+|..++.. .+.....+ ...++
T Consensus        29 ~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~---~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~  104 (529)
T d1jdha_          29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIP  104 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHH
T ss_conf             999999999999999984557789998713399999999847---99999999999999999589-16699999879899


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             99974259996789999999999999974166668703377669999999822998699999999999998149999124
Q 002638          124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA  203 (898)
Q Consensus       124 ~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~y  203 (898)
                      .+++.|+++++.|+..|+++++.|+..--...   ..-.....+++|+..|...++.++..++.||..++....+.-...
T Consensus       105 ~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~---~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  181 (529)
T d1jdha_         105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK---MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII  181 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH---HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH---HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998579798999999999998651320113---678765881489998870576888888999988763004788888


Q ss_pred             HH-HHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             89-9999999971298-34649999999999984011271228-999999999648999999999999999999962367
Q 002638          204 FQ-KLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNL  280 (898)
Q Consensus       204 L~-~LlPRLlkLLks~-~fkaK~alLsaIgSLa~vga~~~pyl-e~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avge~  280 (898)
                      .. ..++.+..++.+. ....+..+..++.-+......-...+ ...++.|...+.+.+..++..++.+|..+.......
T Consensus       182 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~  261 (529)
T d1jdha_         182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ  261 (529)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf             76056368999998610489999999987511013323304565433346999862540155530156777504321102


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             99539899999986211987233899
Q 002638          281 VIDGATSTLTVLEACRFDKIKPVRDS  306 (898)
Q Consensus       281 L~Py~~siI~aLE~~RfDKvKpVRDa  306 (898)
                      +  ....+++.|-..-......++..
T Consensus       262 ~--~~~~~i~~Lv~ll~~~~~~~~~~  285 (529)
T d1jdha_         262 E--GMEGLLGTLVQLLGSDDINVVTC  285 (529)
T ss_dssp             S--CCHHHHHHHHHHTTCSCHHHHHH
T ss_pred             H--HHHHCCHHHHHHCCCCCHHHHHH
T ss_conf             5--66401014454124542889999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=9e-07  Score=68.81  Aligned_cols=196  Identities=15%  Similarity=0.083  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999974259996789999999999999974166668703377669999999822998699999999999998149
Q 002638          118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS  197 (898)
Q Consensus       118 LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~  197 (898)
                      ...+++.+...+.+.++.++..++++++.++..-.....   .-....+++.|.+.+.+.+..++..|+.+|..++...+
T Consensus       186 ~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~  262 (434)
T d1q1sc_         186 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE---MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD  262 (434)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH---HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH---HHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHHHHHH
T ss_conf             656999999998524420125677664022012345677---77631542010000234306554021221356776666


Q ss_pred             CCCCHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9991248-999999999712983464999999999998401-1271228-999999999648999999999999999999
Q 002638          198 DPPVVAF-QKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALA  274 (898)
Q Consensus       198 d~~~~yL-~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyl-e~lLp~L~e~LssdDW~vRKaA~EaLgsLA  274 (898)
                      ......+ ..+++.+.++|+++...++..++.+++.++... ....... ..+++.+.+.+.+.++.+|..|+.+|+.++
T Consensus       263 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~  342 (434)
T d1q1sc_         263 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT  342 (434)
T ss_dssp             HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             77899985256405777613641466688887886520045045777766546899998775158688999999999998


Q ss_pred             HHCC-HHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9623-679953-98999999862119872338999999999998
Q 002638          275 LHSS-NLVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK  316 (898)
Q Consensus       275 ~avg-e~L~Py-~~siI~aLE~~RfDKvKpVRDaA~eALelWK~  316 (898)
                      .... +.+... ...++.+|...-..++..++..++.++.....
T Consensus       343 ~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         343 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             34999999999989769999998659998999999999999999

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.1e-05  Score=60.18  Aligned_cols=229  Identities=16%  Similarity=0.140  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH
Q ss_conf             99999999970799258999999999997308-------99977899999861129999056899999999999982101
Q 002638           41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTL-------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL  113 (898)
Q Consensus        41 LK~rll~~L~KLsDrDT~k~Aa~eLD~ia~~L-------~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~  113 (898)
                      +...++..|.+..|.+.++.|+..|-.+..+-       ....++.++.+|    .+.++.+++.++.+|++++......
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL----~~~~~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML----GSPVDSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH----CCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf             999999998479999999999999999958916699999879899999985----7979899999999999865132011


Q ss_pred             C-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Q ss_conf             2-4569999999997425999678999999999999997416666870337766999999982-2998699999999999
Q 002638          114 T-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAK  191 (898)
Q Consensus       114 I-~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~-eqnk~VQ~gAA~ALAk  191 (898)
                      - .-.-...++.++..|+++++.++..++++++.++..-.....   ...-...+++|...+. .....++..++.+|..
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~  212 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL---IILASGGPQALVNIMRTYTYEKLLWTTSRVLKV  212 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             36787658814899988705768888889999887630047888---887605636899999861048999999998751


Q ss_pred             HHHHCCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99814999912489-99999999712983464999999999998401127122899999999964899999999999999
Q 002638          192 MVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL  270 (898)
Q Consensus       192 IIE~a~d~~~~yL~-~LlPRLlkLLks~~fkaK~alLsaIgSLa~vga~~~pyle~lLp~L~e~LssdDW~vRKaA~EaL  270 (898)
                      +..+... ...+.+ ..++.+.+++.+++...+..++.++..+.... .........++.|.+.+.++|..++..|+.+|
T Consensus       213 ls~~~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~-~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         213 LSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             HTTSTTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC-TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHCCCCC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             1013323-304565433346999862540155530156777504321-10256640101445412454288999999988


Q ss_pred             HHHHHHCC
Q ss_conf             99999623
Q 002638          271 SALALHSS  278 (898)
Q Consensus       271 gsLA~avg  278 (898)
                      +.|+....
T Consensus       291 ~~l~~~~~  298 (529)
T d1jdha_         291 SNLTCNNY  298 (529)
T ss_dssp             HHHTTTCH
T ss_pred             HHHCCCHH
T ss_conf             75012203

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=2.5e-05  Score=57.11  Aligned_cols=120  Identities=9%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHH-HHHHHCC
Q ss_conf             992589999999999973089997789999986112999905689999999999998210124569999999-9974259
Q 002638           53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH-IVKRLKD  131 (898)
Q Consensus        53 sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs~-IikrLkD  131 (898)
                      .|...+..|+..|..+.   +++.++.++..+.    ++++.+|..++.+|+.+.....  .   .+.++.. +...+.|
T Consensus        31 ~~~~vR~~A~~~L~~~~---~~~~~~~l~~~l~----d~~~~vr~~a~~aL~~l~~~~~--~---~~~~~~~l~~~~l~d   98 (276)
T d1oyza_          31 HNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICKK--C---EDNVFNILNNMALND   98 (276)
T ss_dssp             SSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTT--T---HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHC---CHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHCCCCC--C---CCCHHHHHHHHHHCC
T ss_conf             99999999999998618---8739999999980----9998999999999987202212--1---202299999998669


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9967899999999999999741666687033776699999998229986999999999999
Q 002638          132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       132 pDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkI  192 (898)
                      +++.||.++..+++.+...-.        ...+.++..|...+.+.+..++..|+.++..+
T Consensus        99 ~~~~vr~~a~~aL~~~~~~~~--------~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          99 KSACVRATAIESTAQRCKKNP--------IYSPKIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             976689999999998702462--------10189999999986472048999999987410

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=0.00017  Score=50.32  Aligned_cols=124  Identities=10%  Similarity=0.021  Sum_probs=85.9

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             11299990568999999999999821012456999999999742599967899999999999999741666687033776
Q 002638           86 ESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL  165 (898)
Q Consensus        86 es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~  165 (898)
                      ...+++++.+|..|+..|+....          +..++.+++.|+|+++.||.+|+.+++.+....         ...+.
T Consensus        26 ~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~---------~~~~~   86 (276)
T d1oyza_          26 RLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---------KCEDN   86 (276)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---------TTHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHCC----------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC---------CCCCC
T ss_conf             88469999999999999986188----------739999999980999899999999998720221---------21202


Q ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             699999998-2299869999999999999814999912489999999997129834649999999999
Q 002638          166 FVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS  232 (898)
Q Consensus       166 lLkPLleaL-~eqnk~VQ~gAA~ALAkIIE~a~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgS  232 (898)
                      .+..|+..+ .+.++.+...|+.+|..++....    ...+.+++.+...+.+++..++..++.+++.
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             299999998669976689999999998702462----1018999999998647204899999998741

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.9e-05  Score=58.19  Aligned_cols=151  Identities=11%  Similarity=0.030  Sum_probs=63.7

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             997425999678999999999999997416666870337766999999982-2998699999999999998149999124
Q 002638          125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVA  203 (898)
Q Consensus       125 IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~-eqnk~VQ~gAA~ALAkIIE~a~d~~~~y  203 (898)
                      |...|.++++.||..++++++.++.+-.....   .-.-...+++|+..+. +.++.++..|+.||..++...+.....+
T Consensus        64 l~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~---~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  140 (264)
T d1xqra1          64 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE---QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF  140 (264)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             99983799999999999999999988888889---999727637999996049989999999999998742440267899


Q ss_pred             -HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             -8999999999712983464999999999998401-12712289-999999996489999999999999999999623
Q 002638          204 -FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHSS  278 (898)
Q Consensus       204 -L~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyle-~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avg  278 (898)
                       -...++-|+++|++++..++..++.+|+.++... .....+.+ ..++.|...|.+++-.+|..|+.+|..|+...+
T Consensus       141 ~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~  218 (264)
T d1xqra1         141 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  218 (264)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf             872012688998805865788999999999874457788888876468999999739998999999999999986488

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.2e-06  Score=61.51  Aligned_cols=183  Identities=12%  Similarity=0.108  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHC-
Q ss_conf             6999999999999707-99258999999999997308999778999998611299990568999999999999821012-
Q 002638           37 AMVEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-  114 (898)
Q Consensus        37 ~~~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I-  114 (898)
                      +-.+-+...+..|..+ .|.|..+       .++.   -..+++++..+.   .+.++.+|..+..+|+.++......- 
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a~-------~l~~---~gg~~~ll~~ll---~s~~~~vr~~A~~~L~~l~~~~~~~~~   95 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNAA-------DFCQ---LSGMHLLVGRYL---EAGAAGLRWRAAQLIGTCSQNVAAIQE   95 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHH-------HHHH---TTHHHHHHHTTT---TCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCHHHHH-------HHHH---CCCHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999976978899-------9998---699999999983---799999999999999999988888889


Q ss_pred             HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             4569999999997425-999678999999999999997416666870337766999999982299869999999999999
Q 002638          115 STHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV  193 (898)
Q Consensus       115 ~P~LpkILs~IikrLk-DpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkII  193 (898)
                      .-.-..+++.+++.|. ++++.||..++++++.++...-....   .-.-...++.|...|.+.+..++..++.+|..++
T Consensus        96 ~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~---~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~  172 (264)
T d1xqra1          96 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL---QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL  172 (264)
T ss_dssp             HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             9997276379999960499899999999999987424402678---9987201268899880586578899999999987


Q ss_pred             HHCCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             814999912489-999999997129834649999999999984
Q 002638          194 ECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQ  235 (898)
Q Consensus       194 E~a~d~~~~yL~-~LlPRLlkLLks~~fkaK~alLsaIgSLa~  235 (898)
                      ...+.....+.. ..+|.|+.+|++++..++..++.+++.++.
T Consensus       173 ~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         173 VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             4457788888876468999999739998999999999999986

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0048  Score=38.71  Aligned_cols=110  Identities=10%  Similarity=0.084  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78999998611299990568999999999999821012456--9999999997425999678999999999999997416
Q 002638           77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH--VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        77 Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~--LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~  154 (898)
                      +|.++..|.    +.++.++..+..+|+++|....+. ...  -...++.+++.|+++++.||..|+.+++.|+..-...
T Consensus         4 ip~lv~~L~----~~~~~~~~~a~~~l~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLS----SQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHH----SSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHC----CCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             899999857----999999999999999998499999-999998885999999877999899999999999997499888


Q ss_pred             CCCCCCHH-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66687033-776699999998-229986999999999999981
Q 002638          155 KEENNGTV-VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVEC  195 (898)
Q Consensus       155 ~~e~~~~~-~~~lLkPLleaL-~eqnk~VQ~gAA~ALAkIIE~  195 (898)
                      .    ... -...++.|+..+ ...++.++..|+.+|..+++.
T Consensus        79 ~----~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          79 K----LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             H----HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             H----HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9----99998798289999984337388999999999999864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.89  E-value=0.00018  Score=50.26  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=10.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999998229986999999999999
Q 002638          167 VKPLFEAMMEQNKGVQSGAAMCMAKM  192 (898)
Q Consensus       167 LkPLleaL~eqnk~VQ~gAA~ALAkI  192 (898)
                      ++.|.++|.++++.|+..|+.||.++
T Consensus        55 ~~~L~~~l~d~~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          55 VEPLIKLLEDDSGFVRSGAARSLEQI   80 (111)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             79987330230337999999999986

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.59  E-value=0.00021  Score=49.72  Aligned_cols=84  Identities=17%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             99999982299869999999999999814999912489999999997129834649999999999984011271228999
Q 002638          168 KPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPL  247 (898)
Q Consensus       168 kPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vga~~~pyle~l  247 (898)
                      ++|+.+|.++++.+...|+.||..+..          +..+|.|.++|++++..+|..++.+++.+   +      -+..
T Consensus        25 ~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i---~------~~~~   85 (111)
T d1te4a_          25 EPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI---G------GERV   85 (111)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH---C------SHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCH----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHH---C------CCCH
T ss_conf             999999749987899999999876101----------23279987330230337999999999986---7------6114


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99999964899999999999999
Q 002638          248 LQSIHECLGSTDWATRKAAADAL  270 (898)
Q Consensus       248 Lp~L~e~LssdDW~vRKaA~EaL  270 (898)
                      ++.|..++.++++.+|.+|+.+|
T Consensus        86 ~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          86 RAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999988299899999999998

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.072  Score=29.21  Aligned_cols=150  Identities=16%  Similarity=0.070  Sum_probs=82.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999974259996789999999999999974166668703377--66999999982299869999999999999814999
Q 002638          122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG--LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP  199 (898)
Q Consensus       122 Ls~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~--~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~  199 (898)
                      +|.+++.|+++++.|+..++.+|+.|+..- ++    ....+-  -.+++|.+.|.++++.+|..|+.||..++...++.
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ES----AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SS----HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-HH----HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             899999857999999999999999998499-99----9999998885999999877999899999999999997499888


Q ss_pred             CCHHHH-HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----------------HCCCCHH
Q ss_conf             912489-999999997129-8346499999999999840112712289999999996----------------4899999
Q 002638          200 PVVAFQ-KLCARICKLLSN-QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC----------------LGSTDWA  261 (898)
Q Consensus       200 ~~~yL~-~LlPRLlkLLks-~~fkaK~alLsaIgSLa~vga~~~pyle~lLp~L~e~----------------LssdDW~  261 (898)
                      -..+.. ..++.+++++.+ .+..++..++.++..++.............++.+...                ....+..
T Consensus        79 ~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHH
T ss_conf             99999879828999998433738899999999999986413578888601078899987532211000035530214499


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999996
Q 002638          262 TRKAAADALSALALH  276 (898)
Q Consensus       262 vRKaA~EaLgsLA~a  276 (898)
                      ++..++.+|..++..
T Consensus       159 v~~~a~~~l~~~~~~  173 (457)
T d1xm9a1         159 VFFNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999987368

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.35  Score=23.67  Aligned_cols=231  Identities=12%  Similarity=0.137  Sum_probs=143.4

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHH---HH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999861129999056899999999999982101245---69---999999997425999678999999999999997416
Q 002638           81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTST---HV---TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG  154 (898)
Q Consensus        81 Ls~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P---~L---pkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~  154 (898)
                      |..|.......+...||.+..++.++.+...+.-.|   ||   |.|+..++++..+++...      +.|.+.+.+++.
T Consensus        71 l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl------~~G~mLREcik~  144 (330)
T d1upka_          71 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLRECIRH  144 (330)
T ss_dssp             HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHHHHHTS
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHH------HHHHHHHHHHHH
T ss_conf             99999857779971132299999999616789998608998839789999986328860323------565999999933


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             6668703377669999999822998699999999999998149999124----899999999971298346499999999
Q 002638          155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPVV  230 (898)
Q Consensus       155 ~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~y----L~~LlPRLlkLLks~~fkaK~alLsaI  230 (898)
                      ..-..--.....+..+|+.+.-++=.+..-|+..+-.+.-.-+....+|    .+.....+.++|.+++|-+|-..+..+
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999997338899999997387158889899999999970889999999984999999999996488427799889999


Q ss_pred             HHHHH--CC-CCCCCCH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99984--01-1271228--9999999996489999999999999999999623------679953989999998621198
Q 002638          231 GSLSQ--VG-AIAPQSL--EPLLQSIHECLGSTDWATRKAAADALSALALHSS------NLVIDGATSTLTVLEACRFDK  299 (898)
Q Consensus       231 gSLa~--vg-a~~~pyl--e~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avg------e~L~Py~~siI~aLE~~RfDK  299 (898)
                      |-+.-  .. ..+..|+  ..-+..+...|.++...++-.|.-.+-.....-.      +.+..-.+.++++|.....|+
T Consensus       225 gelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99986556799999996788889999998217313377986658553011899977999999983999999998678888


Q ss_pred             --CHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --723389999999999984047
Q 002638          300 --IKPVRDSMNEALQLWKKIAGK  320 (898)
Q Consensus       300 --vKpVRDaA~eALelWK~I~~~  320 (898)
                        ++   ..-.+=-.+.++|...
T Consensus       305 ~~De---qF~~EK~~lI~~I~~L  324 (330)
T d1upka_         305 TEDE---QFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             -CCS---HHHHHHHHHHHHHHTC
T ss_pred             CCHH---HHHHHHHHHHHHHHHC
T ss_conf             7314---0789999999999848

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.57  E-value=0.032  Score=32.03  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=27.9

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999648999999999999999999962367995398999999862119872338999999
Q 002638          249 QSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA  310 (898)
Q Consensus       249 p~L~e~LssdDW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eA  310 (898)
                      +.|..++.+++|.+|.++++.+.              ...+..|    -|.++.||+.+.+.
T Consensus       189 ~~L~~l~~D~d~~VR~aaae~~~--------------~~ll~~L----~D~d~~VR~aA~~~  232 (233)
T d1lrva_         189 DDLLELLHDPDWTVRLAAVEHAS--------------LEALREL----DEPDPEVRLAIAGR  232 (233)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC--------------HHHHHHC----CCCCHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCC--------------HHHHHHH----CCCCHHHHHHHHHH
T ss_conf             99999873998899999997063--------------9999986----79999999999970