Citrus Sinensis ID: 002752

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-----
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccccEEEEEEEccccccccccccccEEcccccEEEcccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHccccccHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccEccccccEcHHHHcccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccEEEEEEEEcccccccccHHHHcccccEEEEEEcccccEc
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKvydtdnanqKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTkafskeglgqqpktdpkekakSETRDWLNNLVSELESQIDSFEAELEGltvkkgktrpprlthlETSITRHKAHIMKLELILRLldndelspeqvNDVKDLLEDYVERnqddfeefsdvdelyhllpldkvesledlvtigppglvkgapalSLKASLAASASQMPATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
mgasrklqgeiDRVLKKVQEGVDVFDSIWNkvydtdnanqkekFEADLKKEIKKLQRYRDQIktwiqsseikdkkaLVDARKLIEREMerfkiceketktkafskeglgqqpktdpkekaksETRDWLNNLVSELESQIDSFEAELegltvkkgktrpprlthletsitrhkaHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEdtasqdsnsdvaartppakssgvgstastpaVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNtgpisssppvnltsstkeedvgnfpgrrsspsltdvRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGapalslkaslaasasQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
***********DRVLKKVQEGVDVFDSIWNKVYDTDN*************EIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKIC********************************************************************HLETSITRHKAHIMKLELILRLLDNDELS**QVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGA*****************************************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
******L*GEIDRVLKKVQEGVDVFDSIWN*********************IKKLQRYRDQIKTWI*********ALVDARKLIEREMERFKIC*****************************TRDWLNNLVSELESQIDS**************************ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GRRSVSDLGAIGDS******************QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ***************TYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKE******************RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVIS*******************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
****RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDL************************************************************************************************************************************************************************************************************************************************************P*****W**G****************EIAPDQREKFLQRLQQVQQQGHSNLLGM*************P*****NS************L*V**PG*N********************************************************************************************************************IGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQxxxxxxxxxxxxxxxxxxxxxIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query885 2.2.26 [Sep-21-2011]
O75175753 CCR4-NOT transcription co yes no 0.268 0.316 0.526 4e-64
Q8K0V4751 CCR4-NOT transcription co yes no 0.268 0.316 0.522 8e-64
O13870640 General negative regulato yes no 0.488 0.675 0.342 4e-56
P06102836 General negative regulato yes no 0.240 0.254 0.416 4e-39
Q12514560 General negative regulato no no 0.323 0.510 0.359 6e-38
Q52JK6603 Probable NOT transcriptio N/A no 0.180 0.265 0.287 2e-10
Q9NZN8540 CCR4-NOT transcription co no no 0.100 0.164 0.34 4e-10
Q8C5L3540 CCR4-NOT transcription co no no 0.100 0.164 0.34 5e-10
Q9FPW4614 Probable NOT transcriptio no no 0.077 0.112 0.376 2e-07
P06100191 General negative regulato no no 0.142 0.659 0.329 6e-07
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  246 bits (629), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 131/249 (52%), Positives = 170/249 (68%), Gaps = 11/249 (4%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           M   RKLQGEIDR LKKV EGV+ F+ IW K+++  NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1   MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60

Query: 61  QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
           QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG   K DP +K 
Sbjct: 61  QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120

Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSITRHKAHI 175
           K E   WL N +  L  Q+D FE+E+E L+V+       K +  R+  L+  I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180

Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
             LE ILR+LDND +  + +  +KD +E YV+ +QD DFEE    + LY  L L+ +   
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLDLEDIP-- 235

Query: 235 EDLVTIGPP 243
           + LV   PP
Sbjct: 236 QALVATSPP 244
The CCR4-NOT complex functions as general transcription regulation complex.
Homo sapiens (taxid: 9606)
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 Back     alignment and function description
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 Back     alignment and function description
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2 Back     alignment and function description
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 Back     alignment and function description
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 Back     alignment and function description
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query885
297739742897 unnamed protein product [Vitis vinifera] 0.994 0.981 0.788 0.0
255568948889 conserved hypothetical protein [Ricinus 0.987 0.983 0.767 0.0
359481840888 PREDICTED: uncharacterized protein LOC10 0.984 0.980 0.774 0.0
224125888886 predicted protein [Populus trichocarpa] 0.985 0.984 0.773 0.0
356560386884 PREDICTED: uncharacterized protein LOC10 0.980 0.981 0.723 0.0
224144772895 predicted protein [Populus trichocarpa] 0.988 0.977 0.733 0.0
449446768900 PREDICTED: uncharacterized protein LOC10 0.996 0.98 0.708 0.0
356559538892 PREDICTED: uncharacterized protein LOC10 0.989 0.982 0.705 0.0
356571684882 PREDICTED: uncharacterized protein LOC10 0.974 0.977 0.712 0.0
357508635901 CCR4-NOT transcription complex subunit [ 0.972 0.955 0.689 0.0
>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1367 bits (3537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 711/902 (78%), Positives = 789/902 (87%), Gaps = 22/902 (2%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
Sbjct: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61  QIKTWIQSSEIKDKK-------ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 113
           QIKTWIQSSEIKDKK       AL+DARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61  QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120

Query: 114 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA 173
           TDPKEKAKSETRDWLN +V ELESQIDSFEAE+EGL+VKKGKTRPPRLTHLETSI RHKA
Sbjct: 121 TDPKEKAKSETRDWLNTVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSIARHKA 180

Query: 174 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES 233
           HIMKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVES
Sbjct: 181 HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVES 240

Query: 234 LEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNS 293
           LEDLVTIG PGLVKGAPALSLK SL  + +Q+PATV S  QQ TS+QEQ E+TASQDSNS
Sbjct: 241 LEDLVTIGAPGLVKGAPALSLKNSL--TPTQIPATVTSPLQQSTSIQEQSEETASQDSNS 298

Query: 294 DVAARTPPAKSSGVGSTAS-TPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD 352
           ++  RTPPAK+S +GS+AS TP    ATPI +NV A  LS AS    +LP S+SVRGV +
Sbjct: 299 EIGPRTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLE 357

Query: 353 NTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSS 409
           N G   SSP VN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS
Sbjct: 358 NAGTAISSP-VNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSS 416

Query: 410 ATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGT 469
              +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGT
Sbjct: 417 GITIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGT 476

Query: 470 GSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQ 527
           G  DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE GQFRGRTEI  DQ+EKFLQ
Sbjct: 477 GLADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQ 536

Query: 528 RLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPG 583
           RLQQVQQQ  S +LGMP   GGN KQFS+QQ NPLLQQFNSQ SS+S Q GLG+GVQAPG
Sbjct: 537 RLQQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPG 596

Query: 584 MNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASS 643
           +N+VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S
Sbjct: 597 LNTVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS 656

Query: 644 PGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIG 703
             LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIG
Sbjct: 657 -SLGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIG 715

Query: 704 RRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAV 763
           RRS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAV
Sbjct: 716 RRSISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAV 775

Query: 764 TPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 823
           TPPSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH
Sbjct: 776 TPPSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 835

Query: 824 RKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 883
           RKYNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL
Sbjct: 836 RKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 895

Query: 884 IV 885
           IV
Sbjct: 896 IV 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max] Back     alignment and taxonomy information
>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max] Back     alignment and taxonomy information
>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max] Back     alignment and taxonomy information
>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query885
TAIR|locus:2172389845 AT5G18230 [Arabidopsis thalian 0.415 0.435 0.689 1.1e-207
UNIPROTKB|O75175753 CNOT3 "CCR4-NOT transcription 0.487 0.572 0.392 2.8e-113
UNIPROTKB|F6XXD6753 CNOT3 "Uncharacterized protein 0.505 0.593 0.375 4.5e-113
UNIPROTKB|E1BCS1744 CNOT3 "Uncharacterized protein 0.398 0.474 0.430 4e-112
UNIPROTKB|E2R344710 CNOT3 "Uncharacterized protein 0.384 0.478 0.428 1.7e-111
FB|FBgn0033029844 l(2)NC136 "lethal (2) NC136" [ 0.358 0.375 0.450 2.4e-110
MGI|MGI:2385261751 Cnot3 "CCR4-NOT transcription 0.525 0.619 0.369 2.1e-109
RGD|1304771751 Cnot3 "CCR4-NOT transcription 0.524 0.617 0.371 7.1e-109
ZFIN|ZDB-GENE-040927-6901 cnot3a "CCR4-NOT transcription 0.538 0.529 0.375 1.3e-107
ZFIN|ZDB-GENE-030131-5838908 cnot3b "CCR4-NOT transcription 0.420 0.409 0.415 7.8e-92
TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1256 (447.2 bits), Expect = 1.1e-207, Sum P(2) = 1.1e-207
 Identities = 271/393 (68%), Positives = 303/393 (77%)

Query:     1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
             MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK  VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct:     1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60

Query:    59 RDQIKTWIQSSEIKDKK-------ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 111
             RDQIKTWIQSSEIKDKK       +LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct:    61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120

Query:   112 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 171
             PKTDPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRH
Sbjct:   121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180

Query:   172 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 231
             K HI+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY  LPLD+V
Sbjct:   181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240

Query:   232 ESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDS 291
             E LEDLVT GP  LVKG               Q+ +  + TH Q     E+ EDT+  DS
Sbjct:   241 EGLEDLVTAGP--LVKGTPLSMKSSLAASAS-QVRSISLPTHHQ-----EKTEDTSLPDS 292

Query:   292 NSDVAARTPPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNT-SPVLPGSSSVRG 349
             ++++  +TPP K+ +G+ S  STPA G   P S+NVPA  +SN S T S  +P  +S+  
Sbjct:   293 SAEMVPKTPPPKNGAGLHSAPSTPAGG--RP-SLNVPAGNVSNTSVTLSTSIPTQTSIES 349

Query:   350 VFDNTGPISSSPP--VNLTSSTKEEDVGNFPGR 380
             +  +  P+++       L S      V + P R
Sbjct:   350 M-GSLSPVAAKEEDATTLPSRKPPSSVADTPLR 381
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS
UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5838 cnot3b "CCR4-NOT transcription complex, subunit 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
pfam04065233 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not 2e-97
pfam04153131 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family 1e-56
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 3e-55
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 1e-31
COG5601172 COG5601, CDC36, General negative regulator of tran 2e-15
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.004
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component Back     alignment and domain information 
 Score =  304 bits (780), Expect = 2e-97
 Identities = 134/233 (57%), Positives = 170/233 (72%), Gaps = 7/233 (3%)

Query: 3   ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
           A+RKLQ EID++LKKV EG++ FDSI+ K+ +  NA+QKEK E+DLK+EIKKLQR RDQI
Sbjct: 2   AARKLQQEIDKLLKKVAEGLESFDSIYEKLENATNASQKEKLESDLKREIKKLQRLRDQI 61

Query: 63  KTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKS 122
           KTW+ SS+IKDK +L++ RKLIE  MERFK  EKE KTKAFSKEGL    K DPKEK K+
Sbjct: 62  KTWLSSSDIKDKDSLLENRKLIETAMERFKAVEKEMKTKAFSKEGLSAASKLDPKEKEKA 121

Query: 123 ETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPP---RLTHLETSITRHKAHIMK 177
           E  D+L+N + EL  QI+  EAE+E L+V  KK K       R+  LE  + RHK HI K
Sbjct: 122 EVCDFLSNTIDELNKQIELLEAEVESLSVQRKKRKADAAKQERIAELEELLERHKFHISK 181

Query: 178 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 230
           LELILRLL+N EL PEQV+D+K+ +E YVE NQ+   +F + + +Y  L LD+
Sbjct: 182 LELILRLLENGELDPEQVDDIKEDIEYYVESNQE--PDFVEDETIYDDLNLDE 232

Length = 233
>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 885
KOG2150575 consensus CCR4-NOT transcriptional regulation comp 100.0
COG5665548 NOT5 CCR4-NOT transcriptional regulation complex, 100.0
PF04065233 Not3: Not1 N-terminal domain, CCR4-Not complex com 100.0
PF04153134 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR 100.0
COG5601172 CDC36 General negative regulator of transcription 99.98
KOG2151312 consensus Predicted transcriptional regulator [Tra 99.56
KOG2151 312 consensus Predicted transcriptional regulator [Tra 99.37
PHA02562562 46 endonuclease subunit; Provisional 95.38
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 95.36
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.33
KOG09961293 consensus Structural maintenance of chromosome pro 93.83
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 93.34
KOG0963629 consensus Transcription factor/CCAAT displacement 92.95
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 92.66
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 92.63
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 92.62
KOG09331174 consensus Structural maintenance of chromosome pro 92.52
PRK04778569 septation ring formation regulator EzrA; Provision 91.88
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 91.71
PRK04863 1486 mukB cell division protein MukB; Provisional 91.65
KOG3771460 consensus Amphiphysin [Intracellular trafficking, 91.64
PF07139302 DUF1387: Protein of unknown function (DUF1387); In 91.48
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 91.37
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 91.36
PF00038312 Filament: Intermediate filament protein; InterPro: 91.28
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 90.8
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.68
KOG09961293 consensus Structural maintenance of chromosome pro 90.45
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 89.72
KOG2911439 consensus Uncharacterized conserved protein [Funct 89.71
PRK02224880 chromosome segregation protein; Provisional 89.56
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 88.85
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 88.41
COG11961163 Smc Chromosome segregation ATPases [Cell division 88.31
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 88.17
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 88.07
PRK02224880 chromosome segregation protein; Provisional 87.8
PRK01156895 chromosome segregation protein; Provisional 87.76
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 87.72
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 87.67
COG11961163 Smc Chromosome segregation ATPases [Cell division 87.59
PTZ00464211 SNF-7-like protein; Provisional 87.28
PRK03918880 chromosome segregation protein; Provisional 87.28
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 87.19
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 87.0
PRK11637428 AmiB activator; Provisional 86.84
PRK03918880 chromosome segregation protein; Provisional 86.29
PF13166712 AAA_13: AAA domain 86.24
COG4942420 Membrane-bound metallopeptidase [Cell division and 85.88
PRK05771646 V-type ATP synthase subunit I; Validated 85.7
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 85.59
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 85.49
PTZ00464211 SNF-7-like protein; Provisional 85.36
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 85.24
KOG06121317 consensus Rho-associated, coiled-coil containing p 85.0
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 84.98
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 84.87
PF04799171 Fzo_mitofusin: fzo-like conserved region; InterPro 84.86
cd07675252 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/ 84.85
cd00176213 SPEC Spectrin repeats, found in several proteins i 84.73
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 84.53
cd07672240 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin 84.32
COG1283533 NptA Na+/phosphate symporter [Inorganic ion transp 84.15
PHA0042588 DNA packaging protein, small subunit 83.94
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 83.33
PRK09039343 hypothetical protein; Validated 83.21
KOG10291118 consensus Endocytic adaptor protein intersectin [S 83.19
PRK01156895 chromosome segregation protein; Provisional 82.95
PRK09343121 prefoldin subunit beta; Provisional 82.75
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 82.75
PF10174775 Cast: RIM-binding protein of the cytomatrix active 82.34
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 82.28
cd00890129 Prefoldin Prefoldin is a hexameric molecular chape 81.72
PF12729181 4HB_MCP_1: Four helix bundle sensory module for si 81.59
cd07655258 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ 81.37
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 81.11
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 80.94
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 80.84
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 80.66
KOG4460741 consensus Nuclear pore complex, Nup88/rNup84 compo 80.57
PF1112382 DNA_Packaging_2: DNA packaging protein ; InterPro: 80.25
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 80.12
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 80.03
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-118  Score=989.95  Aligned_cols=567  Identities=45%  Similarity=0.660  Sum_probs=391.3

Q ss_pred             CcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Q 002752            2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDAR   81 (885)
Q Consensus         2 aa~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~R   81 (885)
                      |++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||+.|++||
T Consensus         1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~R   80 (575)
T KOG2150|consen    1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNR   80 (575)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhh
Q 002752           82 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL  161 (885)
Q Consensus        82 K~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~  161 (885)
                      ||||.+|||||+|||||||||||||||+.++|+||+|++|+|+++||+++|++|++|+|.||+|                
T Consensus        81 rlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~----------------  144 (575)
T KOG2150|consen   81 RLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE----------------  144 (575)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999994                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCCCccccccccccC
Q 002752          162 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIG  241 (885)
Q Consensus       162 ~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdDf~ef~dde~iYd~L~Lde~~~~~~~~~~~  241 (885)
                       +++.+|+||+|||.+||++||+|+|++++|+.|++++|||.||||+|+|  +||.++++||++|+|++.+...++++.+
T Consensus       145 -~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~~~~~~~~  221 (575)
T KOG2150|consen  145 -ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEASMDAVAPG  221 (575)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhhHhhhcCC
Confidence             7999999999999999999999999999999999999999999999999  2556689999999999999888888765


Q ss_pred             CCCCcCCCchhhhhhhhccccCCCCcccccccccCCcccccCccccccCCCCCcccCCCCCCCCCCCCCC-CCCCCCCCC
Q 002752          242 PPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA-STPAVGPAT  320 (885)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~k~~~~~s~~-~~p~~~~~t  320 (885)
                      ...          +.+.+.+                              +++++++..+++++....+. .-......+
T Consensus       222 ~~~----------~~~~~~s------------------------------~~~~e~~e~~~~~~~k~~~~~~~~~d~~d~  261 (575)
T KOG2150|consen  222 SSL----------NNKKMAS------------------------------ETDSEPIESYVEMSNKEPAENVDDADPADS  261 (575)
T ss_pred             ccc----------hhhhhhh------------------------------hccccccccccccCCCCccccccccCCCCC
Confidence            411          2222211                              11111111111111110000 000000011


Q ss_pred             ccccccCccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcccc-ccccCCCCCC
Q 002752          321 PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDV-RVMGRGGLSS  399 (885)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~k~~~~~~~p~~~~~p~~~~~-r~~~~~~~~~  399 (885)
                      +...++.                  +...+.       +.-|++                    .+.+. ++       +
T Consensus       262 ~i~~n~~------------------~~s~~~-------~~tp~~--------------------~~~~~~~~-------t  289 (575)
T KOG2150|consen  262 PIPPNLE------------------SASQQI-------SGTPTA--------------------VVTDVHRE-------T  289 (575)
T ss_pred             CCCcCCC------------------Chhhhc-------CCCCcc--------------------cccccccc-------c
Confidence            1111000                  000000       000000                    00000 00       0


Q ss_pred             CCCCCcCCCCCcccCCCCCCCCCCchhhhhhhhccccccccCCCCCcccccccCcccccccccccCCCCCCccCCCCccc
Q 002752          400 QPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGE  479 (885)
Q Consensus       400 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~q~~~s~~~~~~~~~~~~~~~~~~~~~d~s~~~~  479 (885)
                        ....|+..+  .++.                                                               
T Consensus       290 --~~~~~~~~~--~~s~---------------------------------------------------------------  302 (575)
T KOG2150|consen  290 --HNGPPIGID--ASSS---------------------------------------------------------------  302 (575)
T ss_pred             --cCCCccccC--CCcc---------------------------------------------------------------
Confidence              000000000  0000                                                               


Q ss_pred             cccccccccCCCCCcccccCCCccCCCCCCCccCccccCchhHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCccchhH
Q 002752          480 TVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLL  559 (885)
Q Consensus       480 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~r~ei~~d~~~~~~q~~qq~qqq~~~~~l~~p~g~~~q~~~~q~~ll  559 (885)
                       ++.+|.+. + .|.+.      ++++                                                    .
T Consensus       303 -~A~aaA~~-~-~~~~s------~~~~----------------------------------------------------~  321 (575)
T KOG2150|consen  303 -AAPSGAVL-A-KGSNG------QHQS----------------------------------------------------P  321 (575)
T ss_pred             -ccchhhhc-c-ccccc------CCCc----------------------------------------------------c
Confidence             00000000 0 00000      0000                                                    0


Q ss_pred             HhhhccCCccccccccCccccCCCCCcccccccccCCCCCCcCCcccccccCCC-CCccccccccCCCCCCCCCCCCCCC
Q 002752          560 QQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ-KDADVSHLKVEEPQQPQNLPEESTP  638 (885)
Q Consensus       560 ~q~~sq~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~  638 (885)
                      ||+++                               |.++++|..+.+...... +.+..++.-.-..|-..+.|+++..
T Consensus       322 qq~~~-------------------------------~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~k  370 (575)
T KOG2150|consen  322 QQLRI-------------------------------PLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSAK  370 (575)
T ss_pred             ccccc-------------------------------cCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhch
Confidence            11111                               223333333333332211 1111111100001111223333221


Q ss_pred             CccCCCCCCCCccccCcCCCcccccCCCCCCCCcCCccccccCCCCCCCC----CCCCCCCCCCccccccccCCCCcccc
Q 002752          639 ESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQ----PLQSSQPSGGLGVIGRRSVSDLGAIG  714 (885)
Q Consensus       639 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~q~~rd~~l~~~q----~~~s~~~~glLGVi~r~sdpDL~AlG  714 (885)
                                           +.+..+.+.+..+++..-..+++.+++..    +.+++..+--+++..+|....||++ 
T Consensus       371 ---------------------~~~~~s~~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~-  428 (575)
T KOG2150|consen  371 ---------------------LQASKSESPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ-  428 (575)
T ss_pred             ---------------------hccCcccCCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc-
Confidence                                 11111334444444444444444444332    2222222211222222222255543 


Q ss_pred             CCCCCccccCCCcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhcccCCCCCcc
Q 002752          715 DSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT  794 (885)
Q Consensus       715 ~DLT~~~~tLG~~~~~~LNLns~E~Ly~tF~sPwdsep~r~y~P~~p~~~P~cY~~~p~P~L~np~~f~K~Ki~kfs~ET  794 (885)
                               .++++++..++-+.|..|...+.|.+++.++.|.|++|+.+|+.|++++++..+...+|+|     |+.||
T Consensus       429 ---------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dT  494 (575)
T KOG2150|consen  429 ---------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDT  494 (575)
T ss_pred             ---------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccc
Confidence                     1256899999999999999999999999999999999999999999999999999999999     99999


Q ss_pred             eEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCccCccccccccccccccceEE
Q 002752          795 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTF  874 (885)
Q Consensus       795 LFYIFYs~PgD~~QllAA~EL~~RgWRYHKk~~~WftR~~eP~v~t~~yErG~Y~yFDp~~~~~~~~~~W~qk~K~eFtf  874 (885)
                      ||||||+++|++.|++||+||++|+||||++|.+||+|+.||+.+|+.||+|.|+|||+        ..||+|+|.+|+|
T Consensus       495 LFfiFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~--------~~W~qrkK~dFtf  566 (575)
T KOG2150|consen  495 LFFIFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDY--------KDWSQRKKIDFTF  566 (575)
T ss_pred             eeeEEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEeh--------hHhhhhhccceee
Confidence            99999999999999999999999999999999999999999999999999999999999        4899999999999


Q ss_pred             eccchhhh
Q 002752          875 EYNYLEDE  882 (885)
Q Consensus       875 eY~~LE~r  882 (885)
                      +|.|||+.
T Consensus       567 eY~yLE~~  574 (575)
T KOG2150|consen  567 EYQYLEDS  574 (575)
T ss_pred             ehhhccCC
Confidence            99999975

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [] Back     alignment and domain information
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes Back     alignment and domain information
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK05771 V-type ATP synthase subunit I; Validated Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases Back     alignment and domain information
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 Back     alignment and domain information
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PHA00425 DNA packaging protein, small subunit Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly Back     alignment and domain information
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain Back     alignment and domain information
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 48/273 (17%), Positives = 91/273 (33%), Gaps = 63/273 (23%)

Query: 10  EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI--- 66
             + VL+ +Q+ +   D  W    D   +N K +    ++ E+++L + +      +   
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIH-SIQAELRRLLKSKPYENCLLVLL 251

Query: 67  --QSSEIKDK-----KALV-------------DARKLIEREMERFKICEKETKTKAFSKE 106
             Q+++  +      K L+                  I  +     +   E K+    K 
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKY 310

Query: 107 GLGQQPKTDPKEKAK----------SETRD-------WLNNLVSELESQIDSFEAELEGL 149
            L  +P+  P+E                RD       W +    +L + I+S    LE  
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 150 TVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY--VE 207
             +K          L  S+    AHI    ++L L+  D +    V  V + L  Y  VE
Sbjct: 370 EYRK------MFDRL--SVFPPSAHIP--TILLSLIWFD-VIKSDVMVVVNKLHKYSLVE 418

Query: 208 RNQDDFEEFSDVDELYHLLPLDKVESLEDLVTI 240
           +   +    S        + L+    LE+   +
Sbjct: 419 KQPKES-TIS-----IPSIYLELKVKLENEYAL 445
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00