Citrus Sinensis ID: 002772
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | 2.2.26 [Sep-21-2011] | |||||||
| Q7Y211 | 890 | Pentatricopeptide repeat- | yes | no | 0.973 | 0.965 | 0.687 | 0.0 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.829 | 0.904 | 0.413 | 1e-171 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.917 | 0.834 | 0.372 | 1e-165 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.909 | 0.920 | 0.370 | 1e-161 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.913 | 0.913 | 0.392 | 1e-161 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.925 | 0.766 | 0.354 | 1e-158 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.876 | 0.805 | 0.378 | 1e-153 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.904 | 0.938 | 0.365 | 1e-153 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.899 | 0.932 | 0.363 | 1e-152 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.914 | 0.929 | 0.360 | 1e-150 |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/873 (68%), Positives = 710/873 (81%), Gaps = 14/873 (1%)
Query: 10 LLPSPPLSSLQTHQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFREAILSYIEMT 69
LL + P S+ + + A S+ + SQ+R E WI+ LRS+ RSN REA+L+Y++M
Sbjct: 32 LLRATPTSATEDVASAVSGAPSIFI--SQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMI 89
Query: 70 RSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSD 129
I+PDN+AFPA+LKAVA +QD+ LGKQIHAHV K+GYG+ SVTVANTLVN+Y KCG D
Sbjct: 90 VLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG-D 148
Query: 130 MWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189
VYKVFDRI+E++QVSWNS+I++LC F KW++ALEAFR ML NVEPSSFTLVSV A
Sbjct: 149 FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTA 208
Query: 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLV 249
CSNL +GL +G+QVH LR GE N+FI+N L+AMY KLG++ +K L SF RDLV
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 268
Query: 250 SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYA 309
+WNT++SSL QN++ LEA+ +LR+M L G++PD +I+SVLPACSHLEML TGKE+HAYA
Sbjct: 269 TWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328
Query: 310 LRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEA 369
L+N L +NSFVGSALVDMYCNC++V GRRVFD + D+KI LWNAMI GY QNE+D+EA
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388
Query: 370 LMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429
L+LFI MEE AGL N+TTM+ VVPACVRS AF KE IHG +K GL RDR+VQN LMD
Sbjct: 389 LLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMD 448
Query: 430 MYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNN 489
MYSR+G+I+I+ IF ME RD V+WNTMITGY H DAL+LL +MQN+E + ++
Sbjct: 449 MYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG- 507
Query: 490 VYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMY 549
+ + KPNSITLMT+LP C ALSALAKGKEIHAYAI+N LATDV VGSALVDMY
Sbjct: 508 -----ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562
Query: 550 AKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN 609
AKCGCL +R+VFD +P +NVITWNVIIMAYGMHG GQE ++LL+ M+ +G VKPN
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-----VKPN 617
Query: 610 EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669
EVTFI++FAACSHSGMV EG+ +FY MK DYG+EPS DHYACVVDLLGRAG++++AYQL+
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM 677
Query: 670 NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729
NMMP +F+KAGAWSSLLGA RIH N+EIGEIAAQNL LEP+VASHYVLL+NIYSSA LW
Sbjct: 678 NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 737
Query: 730 DKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKE 789
DKA +VR+ MKE GVRKEPGCSWIE GDE+HKF+AGD SH QSE+L G+LE L ERMRKE
Sbjct: 738 DKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE 797
Query: 790 GYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQAT 849
GYVPDTSCVLHNV E+EKE LLCGHSEKLAIAFGILNT PGT IRVAKNLRVCNDCH AT
Sbjct: 798 GYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 857
Query: 850 KFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
KFISKI REIILRDVRRFH FKNGTCSCGDYW
Sbjct: 858 KFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 317/767 (41%), Positives = 467/767 (60%), Gaps = 35/767 (4%)
Query: 119 LVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEP 178
LV+++ + GS + + +VF+ I K V +++M+ + D AL+ F M Y +VEP
Sbjct: 75 LVSLFCRYGS-VDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEP 133
Query: 179 SSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAK 237
+ + C + + LR+G+++HG ++ G + F M L MYAK +V++A+
Sbjct: 134 VVYNFTYLLKVCGDEAE---LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190
Query: 238 TLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLE 297
+F +RDLVSWNTIV+ SQN A+ ++ M +KP ++I SVLPA S L
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250
Query: 298 MLDTGKEIHAYALRN--DILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNA 355
++ GKEIH YA+R+ D L++ + +ALVDMY C +E R++FD + ++ + WN+
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVN---ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 307
Query: 356 MITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKL 415
MI Y QNE +EA+++F KM + G+ P ++ + AC IH +++L
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLD-EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVEL 366
Query: 416 GLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLL 475
GL R+ V N+L+ MY + ++ + ++F ++ R VSWN MI G+ G+ DAL
Sbjct: 367 GLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYF 426
Query: 476 REMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNML 535
+M++ TV KP++ T ++V+ LS K IH +R+ L
Sbjct: 427 SQMRS--------------RTV---KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCL 469
Query: 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKN 595
+V V +ALVDMYAKCG + AR +FD+M R+V TWN +I YG HG G+ LEL +
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEE 529
Query: 596 MVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDL 655
M + G +KPN VTF+++ +ACSHSG+V G+ FY MK++Y IE S DHY +VDL
Sbjct: 530 M-----QKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584
Query: 656 LGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715
LGRAG++ +A+ I MP + + ++LGAC+IH+NV E AA+ LF L PD +
Sbjct: 585 LGRAGRLNEAWDFIMQMPVK-PAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGY 643
Query: 716 YVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQL 775
+VLL+NIY +A +W+K VR M G+RK PGCS +E +E+H F +G +H S+++
Sbjct: 644 HVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKI 703
Query: 776 HGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRV 835
+ FLE L +++ GYVPDT+ VL V + KE LL HSEKLAI+FG+LNT GTTI V
Sbjct: 704 YAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHV 762
Query: 836 AKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
KNLRVC DCH ATK+IS + REI++RD++RFHHFKNG CSCGDYW
Sbjct: 763 RKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 315/846 (37%), Positives = 491/846 (58%), Gaps = 37/846 (4%)
Query: 45 WIESLRSEARSNQFREAILSYIEM-TRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHV 103
W + S +R+ + E + ++IEM + +D+ PD+F +P V+KA AG+ D+ +G +H V
Sbjct: 154 WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLV 213
Query: 104 VKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDL 163
VK G + V V N LV+ YG G + D ++FD + E++ VSWNSMI G +
Sbjct: 214 VKTGL-VEDVFVGNALVSFYGTHGF-VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEE 271
Query: 164 ALEAFRMMLYSNVE----PSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFI 219
+ M+ N + P TLV+V C+ R + LG+ VHG ++++ +
Sbjct: 272 SFLLLGEMMEENGDGAFMPDVATLVTVLPVCA---REREIGLGKGVHGWAVKLRLDKELV 328
Query: 220 MN-ALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRG 278
+N ALM MY+K G + +A+ +FK ++++VSWNT+V S LRQM G
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 388
Query: 279 --IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVE 336
+K D V+I + +P C H L + KE+H Y+L+ + + N V +A V Y C +
Sbjct: 389 EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE-FVYNELVANAFVASYAKCGSLS 447
Query: 337 CGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPAC 396
+RVF I K + WNA+I G+ Q+ +L ++M+ ++GL P++ T+ S++ AC
Sbjct: 448 YAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK-ISGLLPDSFTVCSLLSAC 506
Query: 397 VRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWN 456
+ ++ + +HG I+ L RD +V +++ +Y G + + +FD ME + VSWN
Sbjct: 507 SKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWN 566
Query: 457 TMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516
T+ITGY G AL + R+M + + I++M V C
Sbjct: 567 TVITGYLQNGFPDRALGVFRQM-----------------VLYGIQLCGISMMPVFGACSL 609
Query: 517 LSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVI 576
L +L G+E HAYA++++L D + +L+DMYAK G + + +VF+ + ++ +WN +
Sbjct: 610 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 669
Query: 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKM 636
IM YG+HG +E ++L + M G P+++TF+ + AC+HSG++ EG+ +M
Sbjct: 670 IMGYGIHGLAKEAIKLFEEMQRTGH-----NPDDLTFLGVLTACNHSGLIHEGLRYLDQM 724
Query: 637 KDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVE 696
K +G++P+ HYACV+D+LGRAG+++ A +++ E G W SLL +CRIHQN+E
Sbjct: 725 KSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLE 784
Query: 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFG 756
+GE A LF LEP+ +YVLLSN+Y+ W+ VR++M EM +RK+ GCSWIE
Sbjct: 785 MGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 844
Query: 757 DEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSE 816
++ F+ G+ E++ L ++ K GY PDT V H+++EEEK L GHSE
Sbjct: 845 RKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSE 904
Query: 817 KLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTC 876
KLA+ +G++ T GTTIRV KNLR+C DCH A K ISK+ REI++RD +RFHHFKNG C
Sbjct: 905 KLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVC 964
Query: 877 SCGDYW 882
SCGDYW
Sbjct: 965 SCGDYW 970
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust.
Identities = 310/836 (37%), Positives = 481/836 (57%), Gaps = 34/836 (4%)
Query: 49 LRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGY 108
LR S A+ + DI P +VL+ A + L GK++ + G+
Sbjct: 68 LRRFCESGNLENAVKLLCVSGKWDIDPRTLC--SVLQLCADSKSLKDGKEVDNFIRGNGF 125
Query: 109 GLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAF 168
+ S + + L MY CG D+ + +VFD + + + WN ++ L + G + ++ F
Sbjct: 126 VIDS-NLGSKLSLMYTNCG-DLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183
Query: 169 RMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLR--VGEWNTFIMNALMAM 226
+ M+ S VE S+T V+ + S+L G G Q+HG L+ GE N+ + N+L+A
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHG---GEQLHGFILKSGFGERNS-VGNSLVAF 239
Query: 227 YAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSI 286
Y K RVD A+ +F +RD++SWN+I++ N + + QM + GI+ D +I
Sbjct: 240 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATI 299
Query: 287 ASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346
SV C+ ++ G+ +H+ ++ ++ F + L+DMY C +++ + VF +S
Sbjct: 300 VSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT-LLDMYSKCGDLDSAKAVFREMS 358
Query: 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKE 406
D+ + + +MI GY + EA+ LF +MEE G+ P+ T+++V+ C R + +
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGK 417
Query: 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICG 466
+H + LG D +V NALMDMY++ G ++ ++ +F +M V+D +SWNT+I GY+
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 477
Query: 467 QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEI 526
+AL L + EEK R P+ T+ VLP C +LSA KG+EI
Sbjct: 478 YANEALSLFNLLL---EEK-------------RFSPDERTVACVLPACASLSAFDKGREI 521
Query: 527 HAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEG 586
H Y +RN +D V ++LVDMYAKCG L A +FD + +++++W V+I YGMHG G
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 587 QEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP 646
+E + L M R ++ +E++F++L ACSHSG+V EG F M+ + IEP+
Sbjct: 582 KEAIALFNQM-----RQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636
Query: 647 DHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF 706
+HYAC+VD+L R G + AY+ I MP D A W +LL CRIH +V++ E A+ +F
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPD-ATIWGALLCGCRIHHDVKLAEKVAEKVF 695
Query: 707 LLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGD 766
LEP+ +YVL++NIY+ A+ W++ +RK++ + G+RK PGCSWIE ++ F+AGD
Sbjct: 696 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
Query: 767 GSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILN 826
S+ ++E + FL + RM +EGY P T L + E EKE LCGHSEKLA+A GI++
Sbjct: 756 SSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIIS 815
Query: 827 TPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
+ G IRV KNLRVC DCH+ KF+SK+ REI+LRD RFH FK+G CSC +W
Sbjct: 816 SGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 330/841 (39%), Positives = 488/841 (58%), Gaps = 35/841 (4%)
Query: 45 WIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVV 104
W +R+ +++ F EA+ Y ++ S + PD + FP+V+KA AG+ D +G ++ ++
Sbjct: 74 WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133
Query: 105 KYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLA 164
G+ S + V N LV+MY + G + +VFD + +D VSWNS+I+ G ++ A
Sbjct: 134 DMGFE-SDLFVGNALVDMYSRMGL-LTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191
Query: 165 LEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNA-L 223
LE + + S + P SFT+ SV A NL ++ G+ +HG +L+ G + ++N L
Sbjct: 192 LEIYHELKNSWIVPDSFTVSSVLPAFGNLLV---VKQGQGLHGFALKSGVNSVVVVNNGL 248
Query: 224 MAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAV-MFLRQMALRGIKPD 282
+AMY K R DA+ +F + RD VS+NT++ + + E+V MFL L KPD
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN--LDQFKPD 306
Query: 283 GVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVF 342
++++SVL AC HL L K I+ Y L+ +++++ V + L+D+Y C ++ R VF
Sbjct: 307 LLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST-VRNILIDVYAKCGDMITARDVF 365
Query: 343 DFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAF 402
+ + K WN++I+GY Q+ EA+ LF KM + + T ++ R
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLF-KMMMIMEEQADHITYLMLISVSTRLADL 424
Query: 403 PDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGY 462
+G+H + IK G+ D V NAL+DMY++ G + S IF M DTV+WNT+I+
Sbjct: 425 KFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISAC 484
Query: 463 TICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAK 522
G L + +M+ E P+ T + LP C +L+A
Sbjct: 485 VRFGDFATGLQVTTQMRKSE-----------------VVPDMATFLVTLPMCASLAAKRL 527
Query: 523 GKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGM 582
GKEIH +R +++ +G+AL++MY+KCGCL + RVF+ M R+V+TW +I AYGM
Sbjct: 528 GKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGM 587
Query: 583 HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI 642
+GEG++ LE +M G + P+ V FIA+ ACSHSG+V EG+ F KMK Y I
Sbjct: 588 YGEGEKALETFADMEKSG-----IVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKI 642
Query: 643 EPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAA 702
+P +HYACVVDLL R+ K+ A + I MP + D A W+S+L ACR ++E E +
Sbjct: 643 DPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPD-ASIWASVLRACRTSGDMETAERVS 701
Query: 703 QNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKF 762
+ + L PD + +L SN Y++ + WDK +RK +K+ + K PG SWIE G +H F
Sbjct: 702 RRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVF 761
Query: 763 LAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEE-KETLLCGHSEKLAIA 821
+GD S QSE ++ LE L M KEGY+PD V N+ EEE K L+CGHSE+LAIA
Sbjct: 762 SSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIA 821
Query: 822 FGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDY 881
FG+LNT PGT ++V KNLRVC DCH+ TK ISKI REI++RD RFH FK+GTCSC D
Sbjct: 822 FGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDR 881
Query: 882 W 882
W
Sbjct: 882 W 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/849 (35%), Positives = 479/849 (56%), Gaps = 33/849 (3%)
Query: 36 GSQTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSL 95
G + + SW+ + +++ EAI + +M I P +AF +VL A I+ L +
Sbjct: 247 GLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEI 306
Query: 96 GKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATL 155
G+Q+H V+K G+ S V N LV++Y G ++ +F ++++D V++N++I L
Sbjct: 307 GEQLHGLVLKLGFS-SDTYVCNALVSLYFHLG-NLISAEHIFSNMSQRDAVTYNTLINGL 364
Query: 156 CRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDG-LRLGRQVHGNSLRVG- 213
+ G + A+E F+ M +EP S TL S+ +ACS DG L G+Q+H + ++G
Sbjct: 365 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS----ADGTLFRGQQLHAYTTKLGF 420
Query: 214 EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273
N I AL+ +YAK ++ A F E ++V WN ++ + D + RQ
Sbjct: 421 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 480
Query: 274 MALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCR 333
M + I P+ + S+L C L L+ G++IH+ ++ + + N++V S L+DMY
Sbjct: 481 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLG 539
Query: 334 EVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVV 393
+++ + + K + W MI GY Q +D++AL F +M + G+ + +++ V
Sbjct: 540 KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD-RGIRSDEVGLTNAV 598
Query: 394 PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTV 453
AC +A + + IH A G D QNAL+ +YSR G+IE S F+ E D +
Sbjct: 599 SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI 658
Query: 454 SWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPG 513
+WN +++G+ G + +AL + M NR + + N+ T + +
Sbjct: 659 AWNALVSGFQQSGNNEEALRVFVRM-------NREGIDN----------NNFTFGSAVKA 701
Query: 514 CGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITW 573
+ + +GK++HA + ++ V +AL+ MYAKCG ++ A + F + +N ++W
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761
Query: 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLF 633
N II AY HG G E L+ M+ V+PN VT + + +ACSH G+V +G+ F
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIH-----SNVRPNHVTLVGVLSACSHIGLVDKGIAYF 816
Query: 634 YKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ 693
M +YG+ P P+HY CVVD+L RAG + A + I MP + D A W +LL AC +H+
Sbjct: 817 ESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD-ALVWRTLLSACVVHK 875
Query: 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWI 753
N+EIGE AA +L LEP+ ++ YVLLSN+Y+ ++ WD R+KMKE GV+KEPG SWI
Sbjct: 876 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWI 935
Query: 754 EFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCG 813
E + IH F GD +H ++++H + ++L++R + GYV D +L+ + E+K+ ++
Sbjct: 936 EVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFI 995
Query: 814 HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKN 873
HSEKLAI+FG+L+ P I V KNLRVCNDCH KF+SK+ +REII+RD RFHHF+
Sbjct: 996 HSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEG 1055
Query: 874 GTCSCGDYW 882
G CSC DYW
Sbjct: 1056 GACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/808 (37%), Positives = 466/808 (57%), Gaps = 35/808 (4%)
Query: 79 AFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFD 138
+FPA+LKA A ++D+ G ++H+ +VK GY S+ + N LV+MY K D+ ++FD
Sbjct: 184 SFPALLKACAKLRDIRSGSELHSLLVKLGYH-STGFIVNALVSMYAK-NDDLSAARRLFD 241
Query: 139 RITEK-DQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRD 197
EK D V WNS++++ GK LE FR M + P+S+T+VS AC S
Sbjct: 242 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSY-- 299
Query: 198 GLRLGRQVHGNSLRVGEWNT--FIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIV 255
+LG+++H + L+ ++ ++ NAL+AMY + G++ A+ + + + D+V+WN+++
Sbjct: 300 -AKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358
Query: 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDIL 315
QN + EA+ F M G K D VS+ S++ A L L G E+HAY +++
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG-W 417
Query: 316 IDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIK 375
N VG+ L+DMY C R F + DK + W +I GY QN+ EAL LF
Sbjct: 418 DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRD 477
Query: 376 MEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMG 435
+ + + + + S++ A ++ + IH H ++ GL D +QN L+D+Y +
Sbjct: 478 VAK-KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCR 535
Query: 436 RIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495
+ + +F+ ++ +D VSW +MI+ + G +A+ L R M E
Sbjct: 536 NMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMV---------------E 580
Query: 496 TVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCL 555
T L +S+ L+ +L +LSAL KG+EIH Y +R + + A+VDMYA CG L
Sbjct: 581 TGL--SADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638
Query: 556 NFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA 615
A+ VFD + + ++ + +I AYGMHG G+ +EL M R V P+ ++F+A
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM-----RHENVSPDHISFLA 693
Query: 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPE 675
L ACSH+G++ EG M+ +Y +EP P+HY C+VD+LGRA V +A++ + MM E
Sbjct: 694 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 753
Query: 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735
A W +LL ACR H EIGEIAAQ L LEP + VL+SN+++ W+ V
Sbjct: 754 -PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKV 812
Query: 736 RKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKE-GYVPD 794
R KMK G+ K PGCSWIE ++HKF A D SH +S++++ L ++ ++ +E GYV D
Sbjct: 813 RAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVAD 872
Query: 795 TSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISK 854
T VLHNV+E EK +L GHSE++AIA+G+L TP +R+ KNLRVC DCH K +SK
Sbjct: 873 TKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSK 932
Query: 855 IESREIILRDVRRFHHFKNGTCSCGDYW 882
+ R+I++RD RFHHF++G CSCGD W
Sbjct: 933 LFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 308/842 (36%), Positives = 481/842 (57%), Gaps = 44/842 (5%)
Query: 55 SNQFREAILSYIEMTRSDIQP-DNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSV 113
+ R A+ + M R I+P D+ F ++LK+ +D LGK +HA ++++ SV
Sbjct: 39 AGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV 98
Query: 114 TVANTLVNMYGKCG--SDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMM 171
+ N+L+++Y K G + DV++ R ++D VSW++M+A G+ A++ F
Sbjct: 99 -LYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157
Query: 172 LYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVG--EWNTFIMNALMAMYAK 229
L + P+ + +V ACSN D + +GR G ++ G E + + +L+ M+ K
Sbjct: 158 LELGLVPNDYCYTAVIRACSN---SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK 214
Query: 230 -LGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIAS 288
++A +F + ++V+W +++ Q EA+ F M L G + D +++S
Sbjct: 215 GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSS 274
Query: 289 VLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCR---EVECGRRVFDFI 345
V AC+ LE L GK++H++A+R+ ++ D V +LVDMY C V+ R+VFD +
Sbjct: 275 VFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVFDRM 331
Query: 346 SDKKIALWNAMITGYGQN-EYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPD 404
D + W A+ITGY +N EA+ LF +M + PN T SS AC
Sbjct: 332 EDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391
Query: 405 KEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTI 464
+ + G A K GL + V N+++ M+ + R+E ++ F+ + ++ VS+NT + G
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451
Query: 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGK 524
A LL E+ E ++ T ++L G + ++ KG+
Sbjct: 452 NLNFEQAFKLLSEITERE-----------------LGVSAFTFASLLSGVANVGSIRKGE 494
Query: 525 EIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHG 584
+IH+ ++ L+ + V +AL+ MY+KCG ++ A RVF+ M RNVI+W +I + HG
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554
Query: 585 EGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP 644
VLE M+ EG VKPNEVT++A+ +ACSH G+VSEG F M +D+ I+P
Sbjct: 555 FAIRVLETFNQMIEEG-----VKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Query: 645 SPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704
+HYAC+VDLL RAG + DA++ IN MP + D W + LGACR+H N E+G++AA+
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTMPFQAD-VLVWRTFLGACRVHSNTELGKLAARK 668
Query: 705 LFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLA 764
+ L+P+ + Y+ LSNIY+ A W+++ ++R+KMKE + KE GCSWIE GD+IHKF
Sbjct: 669 ILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYV 728
Query: 765 GDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKET----LLCGHSEKLAI 820
GD +H + Q++ L+ L +++ GYVPDT VLH + EE E LL HSEK+A+
Sbjct: 729 GDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAV 788
Query: 821 AFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGD 880
AFG+++T +RV KNLRVC DCH A K+IS + REI+LRD+ RFHHFK+G CSC D
Sbjct: 789 AFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND 848
Query: 881 YW 882
YW
Sbjct: 849 YW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 320/880 (36%), Positives = 476/880 (54%), Gaps = 87/880 (9%)
Query: 51 SEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGL 110
+ A+S+Q+ + +S + +I P P + K + +S K IH ++ +G +
Sbjct: 10 AAAKSHQYIK--VSLFSTSAPEITP-----PFIHKC----KTISQVKLIHQKLLSFG--I 56
Query: 111 SSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQ--VSWNSMIATLCRFGKWDLALEAF 168
++ + + L++ Y G + + R D WNS+I + G + L F
Sbjct: 57 LTLNLTSHLISTYISVGC-LSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLF 115
Query: 169 RMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEW-NTFIMNALMAMY 227
+M + P ++T V AC +S +R G H SL G N F+ NAL+AMY
Sbjct: 116 GLMHSLSWTPDNYTFPFVFKACGEIS---SVRCGESAHALSLVTGFISNVFVGNALVAMY 172
Query: 228 AKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAV-MFLRQMALRGIKPDGVSI 286
++ + DA+ +F D+VSWN+I+ S ++ K A+ MF R G +PD +++
Sbjct: 173 SRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITL 232
Query: 287 ASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346
+VLP C+ L GK++H +A+ ++ +I N FVG+ LVDMY C ++ VF +S
Sbjct: 233 VNVLPPCASLGTHSLGKQLHCFAVTSE-MIQNMFVGNCLVDMYAKCGMMDEANTVFSNMS 291
Query: 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEE---------------------------- 378
K + WNAM+ GY Q E+A+ LF KM+E
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351
Query: 379 ------VAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKL-------GLGRDRYVQN 425
+G+ PN T+ SV+ C A + IH +AIK G G + V N
Sbjct: 352 VCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVIN 411
Query: 426 ALMDMYSRMGRIEISKTIFDDM--EVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEE 483
L+DMY++ +++ ++ +FD + + RD V+W MI GY+ QHGDA L + M E
Sbjct: 412 QLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYS---QHGDANKALELLSEMFE 468
Query: 484 EKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNML-ATDVVVG 542
E + +PN+ T+ L C +L+AL GK+IHAYA+RN A + V
Sbjct: 469 ED------------CQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS 516
Query: 543 SALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSR 602
+ L+DMYAKCG ++ AR VFD M +N +TW ++ YGMHG G+E L + M G
Sbjct: 517 NCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-- 574
Query: 603 GGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKV 662
K + VT + + ACSHSGM+ +GM+ F +MK +G+ P P+HYAC+VDLLGRAG++
Sbjct: 575 ---FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 663 EDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNI 722
A +LI MP E W + L CRIH VE+GE AA+ + L + Y LLSN+
Sbjct: 632 NAALRLIEEMPMEPPPV-VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNL 690
Query: 723 YSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENL 782
Y++A W +R M+ GV+K PGCSW+E F GD +H +++++ L +
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDH 750
Query: 783 SERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVC 842
+R++ GYVP+T LH+V++EEK+ LL HSEKLA+A+GIL TP G IR+ KNLRVC
Sbjct: 751 MQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVC 810
Query: 843 NDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
DCH A ++S+I +IILRD RFHHFKNG+CSC YW
Sbjct: 811 GDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/855 (36%), Positives = 483/855 (56%), Gaps = 48/855 (5%)
Query: 37 SQTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLG 96
S R +ES+I L +R + +EA ++ + R ++ D F +VLK A + D G
Sbjct: 53 SPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFG 112
Query: 97 KQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLC 156
+Q+H +K+G+ L V+V +LV+ Y K GS+ D KVFD + E++ V+W ++I+
Sbjct: 113 RQLHCQCIKFGF-LDDVSVGTSLVDTYMK-GSNFKDGRKVFDEMKERNVVTWTTLISGYA 170
Query: 157 RFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWN 216
R D L F M +P+SFT A A L+ G QVH ++ G
Sbjct: 171 RNSMNDEVLTLFMRMQNEGTQPNSFTF---AAALGVLAEEGVGGRGLQVHTVVVKNGLDK 227
Query: 217 TF-IMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMA 275
T + N+L+ +Y K G V A+ LF E + +V+WN+++S + N LEA+ M
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287
Query: 276 LRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREV 335
L ++ S ASV+ C++L+ L +++H ++ L D + + +AL+ Y C +
Sbjct: 288 LNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQN-IRTALMVAYSKCTAM 346
Query: 336 ECGRRVFDFIS-DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMS---S 391
R+F I + W AMI+G+ QN+ EEA+ LF +M+ G+ PN T S +
Sbjct: 347 LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR-KGVRPNEFTYSVILT 405
Query: 392 VVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD 451
+P SE +H +K R V AL+D Y ++G++E + +F ++ +D
Sbjct: 406 ALPVISPSE-------VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458
Query: 452 TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL 511
V+W+ M+ GY G+ A+ + E+ T KPN T ++L
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGEL-----------------TKGGIKPNEFTFSSIL 501
Query: 512 PGCGALSA-LAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNV 570
C A +A + +GK+ H +AI++ L + + V SAL+ MYAK G + A VF +++
Sbjct: 502 NVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDL 561
Query: 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630
++WN +I Y HG+ + L++ K M + +VK + VTFI +FAAC+H+G+V EG
Sbjct: 562 VSWNSMISGYAQHGQAMKALDVFKEM-----KKRKVKMDGVTFIGVFAACTHAGLVEEGE 616
Query: 631 DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGA--WSSLLGA 688
F M D I P+ +H +C+VDL RAG++E A ++I MP + AG+ W ++L A
Sbjct: 617 KYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP---NPAGSTIWRTILAA 673
Query: 689 CRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEP 748
CR+H+ E+G +AA+ + ++P+ ++ YVLLSN+Y+ + W + VRK M E V+KEP
Sbjct: 674 CRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEP 733
Query: 749 GCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKE 808
G SWIE ++ + FLAGD SH +Q++ LE+LS R++ GY PDTS VL ++++E KE
Sbjct: 734 GYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKE 793
Query: 809 TLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRF 868
+L HSE+LAIAFG++ TP G+ + + KNLRVC DCH K I+KIE REI++RD RF
Sbjct: 794 AVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRF 853
Query: 869 HHF-KNGTCSCGDYW 882
HHF +G CSCGD+W
Sbjct: 854 HHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | ||||||
| 359472776 | 896 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.967 | 0.731 | 0.0 | |
| 224057914 | 814 | predicted protein [Populus trichocarpa] | 0.921 | 0.998 | 0.745 | 0.0 | |
| 297820538 | 886 | hypothetical protein ARALYDRAFT_486188 [ | 0.975 | 0.970 | 0.678 | 0.0 | |
| 30694644 | 890 | pentatricopeptide repeat-containing prot | 0.973 | 0.965 | 0.687 | 0.0 | |
| 30794008 | 890 | unknown protein [Arabidopsis thaliana] | 0.973 | 0.965 | 0.687 | 0.0 | |
| 6706414 | 803 | putative protein [Arabidopsis thaliana] | 0.904 | 0.993 | 0.711 | 0.0 | |
| 356558231 | 1135 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.773 | 0.656 | 0.0 | |
| 357449183 | 874 | Pentatricopeptide repeat protein [Medica | 0.977 | 0.986 | 0.629 | 0.0 | |
| 255583926 | 679 | pentatricopeptide repeat-containing prot | 0.752 | 0.977 | 0.679 | 0.0 | |
| 413943926 | 869 | hypothetical protein ZEAMMB73_444227 [Ze | 0.901 | 0.914 | 0.529 | 0.0 |
| >gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1342 bits (3473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/878 (73%), Positives = 741/878 (84%), Gaps = 11/878 (1%)
Query: 13 SPPLSSLQTHQPPAT--------TATSLPLPGSQTRCKESWIESLRSEARSNQFREAILS 64
SPP SLQT PP+ T+ + P P S +R SW+++LRS RSN FREAI +
Sbjct: 22 SPP--SLQTQPPPSIQKPTASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAIST 79
Query: 65 YIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYG 124
YIEMT S +PDNFAFPAVLKAV+G+QDL G+QIHA VK+GYG SSVTVANTLVNMYG
Sbjct: 80 YIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYG 139
Query: 125 KCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLV 184
KCG + DV KVFDRIT++DQVSWNS IA LCRF KW+ ALEAFR M N+E SSFTLV
Sbjct: 140 KCGG-IGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLV 198
Query: 185 SVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFE 244
SVALACSNL GLRLG+Q+HG SLRVG+ TF NALMAMYAKLGRVDD+K LF+SF
Sbjct: 199 SVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFV 258
Query: 245 DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKE 304
DRD+VSWNT++SS SQ+D+F EA+ F R M L G++ DGV+IASVLPACSHLE LD GKE
Sbjct: 259 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318
Query: 305 IHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNE 364
IHAY LRN+ LI+NSFVGSALVDMYCNCR+VE GRRVFD I ++I LWNAMI+GY +N
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378
Query: 365 YDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQ 424
DE+AL+LFI+M +VAGL PN TTM+SV+PACV EAF +KE IHG+A+KLG DRYVQ
Sbjct: 379 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQ 438
Query: 425 NALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484
NALMDMYSRMG+++IS+TIFD MEVRD VSWNTMITGY + G++ +AL+LL EMQ ME
Sbjct: 439 NALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENT 498
Query: 485 KNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSA 544
K+ + DE KPN+ITLMTVLPGC AL+A+AKGKEIHAYAIRNMLA+D+ VGSA
Sbjct: 499 KDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSA 558
Query: 545 LVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGG 604
LVDMYAKCGCLN +RRVF+ MP +NVITWNV+IMA GMHG+G+E LEL KNMVAE RGG
Sbjct: 559 LVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGG 618
Query: 605 EVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVED 664
E KPNEVTFI +FAACSHSG++SEG++LFY+MK D+G+EP+ DHYACVVDLLGRAG++E+
Sbjct: 619 EAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEE 678
Query: 665 AYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724
AY+L+N MP EFDK GAWSSLLGACRIHQNVE+GE+AA+NL LEP+VASHYVLLSNIYS
Sbjct: 679 AYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYS 738
Query: 725 SAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSE 784
SA LW+KAM+VRK M++MGV+KEPGCSWIEF DE+HKF+AGD SH QSEQLHGFLE LSE
Sbjct: 739 SAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSE 798
Query: 785 RMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCND 844
+MRKEGYVPDTSCVLHNV+E+EKE LLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCND
Sbjct: 799 KMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCND 858
Query: 845 CHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
CH ATKFISKI REII+RDVRRFHHFK GTCSCGDYW
Sbjct: 859 CHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/816 (74%), Positives = 705/816 (86%), Gaps = 3/816 (0%)
Query: 68 MTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYG-LSSVTVANTLVNMYGKC 126
M S PDNFAFPAVLKAVAGIQ+L LGKQIHAHV K+GYG SSVT+ NTLVNMYGKC
Sbjct: 1 MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60
Query: 127 GSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSV 186
G + D YKVFDRITE+DQVSWNS+I+ LCRF +W++A++AFR+ML EPSSFTLVS+
Sbjct: 61 GG-LGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSM 119
Query: 187 ALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDR 246
ALACSNL +RDGL LG+Q+HG R G W TF NALMAMYAKLGR+DDAK+L FEDR
Sbjct: 120 ALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR 179
Query: 247 DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIH 306
DLV+WN+++SS SQN++F+EA+MFLR M L G+KPDGV+ ASVLPACSHL++L TGKEIH
Sbjct: 180 DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIH 239
Query: 307 AYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYD 366
AYALR D +I+NSFVGSALVDMYCNC +VE GR VFD + D+KI LWNAMI GY Q+E+D
Sbjct: 240 AYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHD 299
Query: 367 EEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNA 426
E+ALMLFI+ME AGL+ NATTMSS+VPA VR E KEGIHG+ IK GL +RY+QNA
Sbjct: 300 EKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNA 359
Query: 427 LMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKN 486
L+DMYSRMG I+ SK IFD ME RD VSWNT+IT Y ICG+ DAL+LL EMQ +EE+
Sbjct: 360 LIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKST 419
Query: 487 RNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALV 546
+ Y+ DE + KPNSITLMTVLPGC +LSALAKGKEIHAYAIRN+LA+ V VGSALV
Sbjct: 420 YDGDYN-DEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALV 478
Query: 547 DMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEV 606
DMYAKCGCLN ARRVFD MP+RNVITWNVIIMAYGMHG+G+E LEL ++MVAEG++GGEV
Sbjct: 479 DMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEV 538
Query: 607 KPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAY 666
KP EVTFIALFA+CSHSGMV EG+ LF+KMK+++GIEP+PDHYAC+VDL+GRAGKVE+AY
Sbjct: 539 KPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAY 598
Query: 667 QLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA 726
L+N MP FDK GAWSSLLGACRI+ N+EIGEIAA+NL L+PDVASHYVLLSNIYSSA
Sbjct: 599 GLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSA 658
Query: 727 QLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERM 786
LWDKAM++R++MK MGV+KEPGCSWIE+GDE+HKFLAGD SH QSE+LH FLE LSER+
Sbjct: 659 GLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERL 718
Query: 787 RKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCH 846
+KEGYVPDT+CVLH+++EEEKET+LCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCH
Sbjct: 719 KKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCH 778
Query: 847 QATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
A+KFISKIE REIILRD RRFHHFK+GTCSCGDYW
Sbjct: 779 TASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp. lyrata] gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1255 bits (3247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/886 (67%), Positives = 712/886 (80%), Gaps = 26/886 (2%)
Query: 11 LPSPPLSSLQTHQPPATTATSLPLPG--------------SQTRCKESWIESLRSEARSN 56
PS PL + P AT + SQ+ E WI+ LRS+ RSN
Sbjct: 13 FPSQPLPFSRQKHPYLLRATPTSVTDDVASTVYGAPSKFISQSHSPEWWIDLLRSKVRSN 72
Query: 57 QFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVA 116
REA+L+YI+M I+PDNFAFPA+LKAVA +QD+ LGKQIHAHV K+GYG+ SVTVA
Sbjct: 73 LLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVA 132
Query: 117 NTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNV 176
NTLVN+Y KCG D VYKVFDRI+E++QVSWNS+I++LC F KW++ALEAFR ML +V
Sbjct: 133 NTLVNLYRKCG-DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV 191
Query: 177 EPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDA 236
EPSSFTLVSVALACSN +GL +G+QVH LR GE N+FI+N L+AMY K+G++ +
Sbjct: 192 EPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGKMGKLASS 251
Query: 237 KTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHL 296
K L SFE RDLV+WNT++SSL QN++FLEA+ +LR+M L G++PDG +I+SVLPACSHL
Sbjct: 252 KVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHL 311
Query: 297 EMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356
EML TGKE+HAYAL+N L +NSFVGSALVDMYCNC++V G RVFD + D+KI LWNAM
Sbjct: 312 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAM 371
Query: 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLG 416
ITGY QNEYDEEAL+LFI+MEE AGL N+TTM+ VVPACVRS AF KE IHG +K G
Sbjct: 372 ITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRG 431
Query: 417 LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLR 476
L RDR+VQNALMDMYSR+G+I+I+K IF ME RD V+WNT+ITGY +H DAL++L
Sbjct: 432 LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLH 491
Query: 477 EMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLA 536
+MQ +E + + + + KPNSITLMT+LP C ALSALAKGKEIHAYAI+N LA
Sbjct: 492 KMQILERKASER------ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA 545
Query: 537 TDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNM 596
TDV VGSALVDMYAKCGCL +R+VFD +P+RNVITWNVI+MAYGMHG Q+ +++L+ M
Sbjct: 546 TDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMM 605
Query: 597 VAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656
+ +G VKPNEVTFI++FAACSHSGMV+EG+ +FY MK DYG+EPS DHYACVVDLL
Sbjct: 606 MVQG-----VKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLL 660
Query: 657 GRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716
GRAG+V++AYQLIN++P FDKAGAWSSLLGACRIH N+EIGEIAAQNL LEP+VASHY
Sbjct: 661 GRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHY 720
Query: 717 VLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLH 776
VLL+NIYSSA LW KA +VR+ MK GVRKEPGCSWIE GDE+HKF+AGD SH QSE+L
Sbjct: 721 VLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLR 780
Query: 777 GFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVA 836
G+LE L ERMRKEGY+PDTSCVLHNV E+EKE LLCGHSEKLAIAFGILNT PGT IRVA
Sbjct: 781 GYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVA 840
Query: 837 KNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
KNLRVCNDCH ATKFISK+ REIILRDVRRFHHFKNGTCSCGDYW
Sbjct: 841 KNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/873 (68%), Positives = 710/873 (81%), Gaps = 14/873 (1%)
Query: 10 LLPSPPLSSLQTHQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFREAILSYIEMT 69
LL + P S+ + + A S+ + SQ+R E WI+ LRS+ RSN REA+L+Y++M
Sbjct: 32 LLRATPTSATEDVASAVSGAPSIFI--SQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMI 89
Query: 70 RSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSD 129
I+PDN+AFPA+LKAVA +QD+ LGKQIHAHV K+GYG+ SVTVANTLVN+Y KCG D
Sbjct: 90 VLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG-D 148
Query: 130 MWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189
VYKVFDRI+E++QVSWNS+I++LC F KW++ALEAFR ML NVEPSSFTLVSV A
Sbjct: 149 FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTA 208
Query: 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLV 249
CSNL +GL +G+QVH LR GE N+FI+N L+AMY KLG++ +K L SF RDLV
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 268
Query: 250 SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYA 309
+WNT++SSL QN++ LEA+ +LR+M L G++PD +I+SVLPACSHLEML TGKE+HAYA
Sbjct: 269 TWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328
Query: 310 LRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEA 369
L+N L +NSFVGSALVDMYCNC++V GRRVFD + D+KI LWNAMI GY QNE+D+EA
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388
Query: 370 LMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429
L+LFI MEE AGL N+TTM+ VVPACVRS AF KE IHG +K GL RDR+VQN LMD
Sbjct: 389 LLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMD 448
Query: 430 MYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNN 489
MYSR+G+I+I+ IF ME RD V+WNTMITGY H DAL+LL +MQN+E + ++
Sbjct: 449 MYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG- 507
Query: 490 VYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMY 549
+ + KPNSITLMT+LP C ALSALAKGKEIHAYAI+N LATDV VGSALVDMY
Sbjct: 508 -----ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562
Query: 550 AKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN 609
AKCGCL +R+VFD +P +NVITWNVIIMAYGMHG GQE ++LL+ M+ +G VKPN
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-----VKPN 617
Query: 610 EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669
EVTFI++FAACSHSGMV EG+ +FY MK DYG+EPS DHYACVVDLLGRAG++++AYQL+
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM 677
Query: 670 NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729
NMMP +F+KAGAWSSLLGA RIH N+EIGEIAAQNL LEP+VASHYVLL+NIYSSA LW
Sbjct: 678 NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 737
Query: 730 DKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKE 789
DKA +VR+ MKE GVRKEPGCSWIE GDE+HKF+AGD SH QSE+L G+LE L ERMRKE
Sbjct: 738 DKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE 797
Query: 790 GYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQAT 849
GYVPDTSCVLHNV E+EKE LLCGHSEKLAIAFGILNT PGT IRVAKNLRVCNDCH AT
Sbjct: 798 GYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 857
Query: 850 KFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
KFISKI REIILRDVRRFH FKNGTCSCGDYW
Sbjct: 858 KFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1248 bits (3230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/873 (68%), Positives = 710/873 (81%), Gaps = 14/873 (1%)
Query: 10 LLPSPPLSSLQTHQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFREAILSYIEMT 69
LL + P S+ + + A S+ + SQ+R E WI+ LRS+ RSN REA+L+Y++M
Sbjct: 32 LLRATPTSATEDVASAVSGAPSIFI--SQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMI 89
Query: 70 RSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSD 129
I+PDN+AFPA+LKAVA +QD+ LGKQIHAHV K+GYG+ SVTVANTLVN+Y KCG D
Sbjct: 90 VLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG-D 148
Query: 130 MWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189
VYKVFDRI+E++QVSWNS+I++LC F KW++ALEAFR ML NVEPSSFTLVSV A
Sbjct: 149 FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTA 208
Query: 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLV 249
CSNL +GL +G+QVH LR GE N+FI+N L+AMY KLG++ +K L SF RDLV
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLV 268
Query: 250 SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYA 309
+WNT++SSL QN++ LEA+ +LR+M L G++PD +I+SVLPACSHLEML TGKE+HAYA
Sbjct: 269 TWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328
Query: 310 LRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEA 369
L+N L +NSFVGSALVDMYCNC++V GRRVFD + D+KI LWNAMI GY QNE+D+EA
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388
Query: 370 LMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429
L+LFI MEE AGL N+TTM+ VVPACVRS AF KE IHG +K GL RDR+VQN LMD
Sbjct: 389 LLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMD 448
Query: 430 MYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNN 489
MYSR+G+I+I+ IF ME RD V+WNTMITGY H DAL+LL +MQN+E + ++
Sbjct: 449 MYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG- 507
Query: 490 VYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMY 549
+ + KPNSITLMT+LP C ALSALAKGKEIHAYAI+N LATDV VGSALVDMY
Sbjct: 508 -----ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562
Query: 550 AKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN 609
AKCGCL +R+VFD +P +NVITWNVIIMAYGMHG GQE ++LL+ M+ +G VKPN
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-----VKPN 617
Query: 610 EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669
EVTFI++FAACSHSGMV EG+ +FY MK DYG+EPS DHYACVVDLLGRAG++++AYQL+
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLM 677
Query: 670 NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729
NMMP +F+KAGAWSSLLGA RIH N+EIGEIAAQNL LEP+VASHYVLL+NIYSSA LW
Sbjct: 678 NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 737
Query: 730 DKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKE 789
DKA +VR+ MKE GVRKEPGCSWIE GDE+HKF+AGD SH QSE+L G+LE L ERMRKE
Sbjct: 738 DKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE 797
Query: 790 GYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQAT 849
GYVPDTSCVLHNV E+EKE LLCGHSEKLAIAFGILNT PGT IRVAKNLRVCNDCH AT
Sbjct: 798 GYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 857
Query: 850 KFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
KFISKI REIILRDVRRFH FKNGTCSCGDYW
Sbjct: 858 KFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1210 bits (3131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/810 (71%), Positives = 673/810 (83%), Gaps = 12/810 (1%)
Query: 73 IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWD 132
I+PDN+AFPA+LKAVA +QD+ LGKQIHAHV K+GYG+ SVTVANTLVN+Y KCG D
Sbjct: 6 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG-DFGA 64
Query: 133 VYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSN 192
VYKVFDRI+E++QVSWNS+I++LC F KW++ALEAFR ML NVEPSSFTLVSV ACSN
Sbjct: 65 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124
Query: 193 LSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWN 252
L +GL +G+QVH LR GE N+FI+N L+AMY KLG++ +K L SF RDLV+WN
Sbjct: 125 LPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 184
Query: 253 TIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRN 312
T++SSL QN++ LEA+ +LR+M L G++PD +I+SVLPACSHLEML TGKE+HAYAL+N
Sbjct: 185 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244
Query: 313 DILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALML 372
L +NSFVGSALVDMYCNC++V GRRVFD + D+KI LWNAMI GY QNE+D+EAL+L
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 304
Query: 373 FIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYS 432
FI MEE AGL N+TTM+ VVPACVRS AF KE IHG +K GL RDR+VQN LMDMYS
Sbjct: 305 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYS 364
Query: 433 RMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYD 492
R+G+I+I+ IF ME RD V+WNTMITGY H DAL+LL +MQN+E + ++
Sbjct: 365 RLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKG---- 420
Query: 493 LDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKC 552
+ + KPNSITLMT+LP C ALSALAKGKEIHAYAI+N LATDV VGSALVDMYAKC
Sbjct: 421 --ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKC 478
Query: 553 GCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT 612
GCL +R+VFD +P +NVITWNVIIMAYGMHG GQE ++LL+ M+ +G VKPNEVT
Sbjct: 479 GCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQG-----VKPNEVT 533
Query: 613 FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672
FI++FAACSHSGMV EG+ +FY MK DYG+EPS DHYACVVDLLGRAG++++AYQL+NMM
Sbjct: 534 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM 593
Query: 673 PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKA 732
P +F+KAGAWSSLLGA RIH N+EIGEIAAQNL LEP+VASHYVLL+NIYSSA LWDKA
Sbjct: 594 PRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKA 653
Query: 733 MDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYV 792
+VR+ MKE GVRKEPGCSWIE GDE+HKF+AGD SH QSE+L G+LE L ERMRKEGYV
Sbjct: 654 TEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYV 713
Query: 793 PDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFI 852
PDTSCVLHNV E+EKE LLCGHSEKLAIAFGILNT PGT IRVAKNLRVCNDCH ATKFI
Sbjct: 714 PDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFI 773
Query: 853 SKIESREIILRDVRRFHHFKNGTCSCGDYW 882
SKI REIILRDVRRFH FKNGTCSCGDYW
Sbjct: 774 SKIVDREIILRDVRRFHRFKNGTCSCGDYW 803
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/885 (65%), Positives = 703/885 (79%), Gaps = 7/885 (0%)
Query: 1 MASSAQCLTLLPSPPLSSLQTHQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFRE 60
+A+ LT P P SSLQTH T T P + R WI+ LRS+ S+ FR+
Sbjct: 255 LAAKEWLLTQPPLPYPSSLQTHPLTLTLPTPPPT-TVERRSPSQWIDLLRSQTHSSSFRD 313
Query: 61 AILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGL-SSVTVANTL 119
AI +Y M + PDNFAFPAVLKA A + DL LGKQIHAHV K+G+ SSV VAN+L
Sbjct: 314 AISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSL 373
Query: 120 VNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPS 179
VNMYGKCG D+ +VFD I ++D VSWNSMIATLCRF +W+L+L FR+ML NV+P+
Sbjct: 374 VNMYGKCG-DLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPT 432
Query: 180 SFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTL 239
SFTLVSVA ACS++ R G+RLG+QVH +LR G+ T+ NAL+ MYA+LGRV+DAK L
Sbjct: 433 SFTLVSVAHACSHV--RGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKAL 490
Query: 240 FKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEML 299
F F+ +DLVSWNT++SSLSQND+F EA+M++ M + G++PDGV++ASVLPACS LE L
Sbjct: 491 FGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERL 550
Query: 300 DTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITG 359
G+EIH YALRN LI+NSFVG+ALVDMYCNC++ + GR VFD + + +A+WNA++ G
Sbjct: 551 RIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAG 610
Query: 360 YGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGR 419
Y +NE+D++AL LF++M + PNATT +SV+PACVR + F DKEGIHG+ +K G G+
Sbjct: 611 YARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGK 670
Query: 420 DRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQ 479
D+YVQNALMDMYSRMGR+EISKTIF M RD VSWNTMITG +CG++ DAL LL EMQ
Sbjct: 671 DKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQ 730
Query: 480 NMEEEKNRNNVYDLDETVLRP-KPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATD 538
+ E + D ++ P KPNS+TLMTVLPGC AL+AL KGKEIHAYA++ LA D
Sbjct: 731 RRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMD 790
Query: 539 VVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVA 598
V VGSALVDMYAKCGCLN A RVFD MP+RNVITWNV+IMAYGMHG+G+E LEL + M A
Sbjct: 791 VAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTA 850
Query: 599 EGSRGGEV-KPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG 657
G EV +PNEVT+IA+FAACSHSGMV EG+ LF+ MK +G+EP DHYAC+VDLLG
Sbjct: 851 GGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLG 910
Query: 658 RAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717
R+G+V++AY+LIN MP +K AWSSLLGACRIHQ+VE GEIAA++LF+LEP+VASHYV
Sbjct: 911 RSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYV 970
Query: 718 LLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHG 777
L+SNIYSSA LWD+A+ VRKKMKEMGVRKEPGCSWIE GDE+HKFL+GD SH QS++LH
Sbjct: 971 LMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHE 1030
Query: 778 FLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAK 837
+LE LS+RMRKEGYVPD SCVLHNV++EEKET+LCGHSE+LAIAFG+LNTPPGTTIRVAK
Sbjct: 1031 YLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAK 1090
Query: 838 NLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
NLRVCNDCH ATK ISKI REIILRDVRRFHHF NGTCSCGDYW
Sbjct: 1091 NLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/894 (62%), Positives = 685/894 (76%), Gaps = 32/894 (3%)
Query: 1 MASSAQCLTLLPSPPLSSLQT---HQPPATTATSLPLP-------GSQTRCKESWIESLR 50
M+S Q L LLP P SS+ T H P T+++++ ++ R W+ LR
Sbjct: 1 MSSFTQPL-LLPYP--SSIHTPNKHHSPPTSSSAITTTTTTTTTVAAEPRLPSEWVSHLR 57
Query: 51 SEARSNQ-FREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYG 109
S+ +S+ F +AI +Y M + + PDNFAFPAVLKA AGIQDL+LGKQ+HAHV K+G
Sbjct: 58 SQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQA 117
Query: 110 LSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFR 169
L + V N+LVNMYGKCG D+ +VFD IT +D VSWNSMI CRF +W+LA+ FR
Sbjct: 118 LPT-AVPNSLVNMYGKCG-DIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFR 175
Query: 170 MMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAK 229
+ML NV P+SFTLVSVA ACSNL +GL LG+QVH LR G+W TF NAL+ MYAK
Sbjct: 176 LMLLENVGPTSFTLVSVAHACSNLI--NGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAK 233
Query: 230 LGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASV 289
LGRV +AKTLF F+D+DLVSWNTI+SSLSQND+F EA+++L M G++P+GV++ASV
Sbjct: 234 LGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASV 293
Query: 290 LPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKK 349
LPACSHLEML GKEIHA+ L N+ LI+NSFVG ALVDMYCNC++ E GR VFD + +
Sbjct: 294 LPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRT 353
Query: 350 IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIH 409
IA+WNAMI GY +NE+D EA+ LF++M GL PN+ T+SSV+PACVR E+F DKEGIH
Sbjct: 354 IAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIH 413
Query: 410 GHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHG 469
+K G +D+YVQNALMDMYSRMGRIEI+++IF M +D VSWNTMITGY +CG+H
Sbjct: 414 SCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHD 473
Query: 470 DALMLLREMQNMEEEKNRNNVYDLDETVLRP-KPNSITLMTVLPGCGALSALAKGKEIHA 528
DAL LL +MQ + E N D ++ P KPNS+TLMTVLPGC AL+AL KGKEIHA
Sbjct: 474 DALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHA 533
Query: 529 YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQE 588
YA++ ML+ DV VGSALVDMYAKCGCLN +R VF+ M VRNVITWNV+IMAYGMHG+G+E
Sbjct: 534 YAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEE 593
Query: 589 VLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648
L+L + MV EG E++PNEVT+IA+FA+ SHSGMV EG++LFY MK +GIEP+ DH
Sbjct: 594 ALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDH 653
Query: 649 YACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL 708
YAC+VDLLGR+G++E+AY LI MP K AWSSLLGAC+IHQN+EIGEIAA+NLF+L
Sbjct: 654 YACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVL 713
Query: 709 EPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGS 768
+P+V Y + Q + +KMKE GVRKEPGCSWIE GDE+HKFLAGD S
Sbjct: 714 DPNVLD--------YGTKQSM-----LGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVS 760
Query: 769 HQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTP 828
H QS+++H +LE LS RM+KEGYVPDTSCVLHNV EEEKET+LCGHSE+LAIAFG+LNT
Sbjct: 761 HPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTS 820
Query: 829 PGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
PGTTIRVAKNLRVCNDCH ATKFISKI REIILRDVRRFHHF+NGTCSCGDYW
Sbjct: 821 PGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/673 (67%), Positives = 539/673 (80%), Gaps = 9/673 (1%)
Query: 10 LLPSPPL--SSLQTHQPPATT--ATSLPLPGSQTRCKESWIESLRSEARSNQFREAILSY 65
L P P+ SS QTH+ P + S P P SQ+R + SWIESLR RSN FREAI +Y
Sbjct: 6 LQPFSPILSSSAQTHELPTKKFLSHSPPKPISQSRSQASWIESLRFNTRSNLFREAISTY 65
Query: 66 IEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGK 125
++M S + PD++AFP VLKAV G+QDL+LGKQIHAHVVKYGY SSV +AN+LVN YGK
Sbjct: 66 VDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVNFYGK 125
Query: 126 CGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVS 185
C S++ DVYKVFDRI E+D VSWNS+I+ CR +W+LALEAFR ML ++EPSSFTLVS
Sbjct: 126 C-SELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLVS 184
Query: 186 VALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245
+ACSNL + +GLRLG+Q+HG R G W+TF NALM MYA LGR+DDAK LFK FED
Sbjct: 185 PVIACSNLRKHEGLRLGKQIHGYCFRNGHWSTFTNNALMTMYANLGRLDDAKFLFKLFED 244
Query: 246 RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEI 305
R+L+SWNT++SS SQN++F+EA+M LR M L G+KPDGV++ASVLPACS+LEML TGKEI
Sbjct: 245 RNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGKEI 304
Query: 306 HAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEY 365
HAYALR+ LI+NSFVGSALVDMYCNC +V GRRVFD I ++K LWNAMI GY QNE+
Sbjct: 305 HAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGYAQNEH 364
Query: 366 DEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQN 425
DE+ALMLFI+M VAGL PN TTM+S+VPA R E+F KE IHG+ IK L RDRYVQN
Sbjct: 365 DEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHGYVIKRDLERDRYVQN 424
Query: 426 ALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEK 485
ALMDMYSRM ++EISKTIFD MEVRD VSWNTMITGY I G + DAL++L EMQ+ E
Sbjct: 425 ALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDALLMLHEMQHANEGI 484
Query: 486 NRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSAL 545
N+ +D D+ KPNSITLMTVLPGC +L+ALAKGKEIHAYA+RN LA++V VGSAL
Sbjct: 485 NK---HDGDKQACF-KPNSITLMTVLPGCASLAALAKGKEIHAYAVRNALASEVTVGSAL 540
Query: 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGE 605
VDMYAKCGCLN +RRVFD MP++NVITWNVI+MAYGMHG G+E LEL K+MVA+G GE
Sbjct: 541 VDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNVGE 600
Query: 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDA 665
VKP EVT IA+ AACSHSGMV EG+ LF++MKDD+GIEP PDHYACV DLLGRAGKVE A
Sbjct: 601 VKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDHGIEPGPDHYACVADLLGRAGKVEQA 660
Query: 666 YQLINMMPPEFDK 678
Y IN MP +FDK
Sbjct: 661 YDFINTMPSDFDK 673
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/824 (52%), Positives = 573/824 (69%), Gaps = 29/824 (3%)
Query: 76 DNFAFPAVLKAVAGIQDLSLGKQIHAHVVK----YGYGLSSVTVANTLVNMYGKCGSDMW 131
D+FA P K+ A ++ L + IH ++ +G+ + VAN L+ Y +CG D+
Sbjct: 58 DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGF---TPAVANALLTAYARCG-DLT 113
Query: 132 DVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACS 191
+F+ + +D V++NS+IA LC F +W AL+A R ML SSFTLVSV LACS
Sbjct: 114 AALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACS 173
Query: 192 NLSRRDGLRLGRQVHGNSLRVGEWN---TFIMNALMAMYAKLGRVDDAKTLFKSFEDRD- 247
+L+ + LRLGR+ H +L+ G + F NAL++MYA+LG VDDA+ LF S + D
Sbjct: 174 HLA--EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDS 231
Query: 248 ----LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303
+V+WNT+VS L Q+ + EA+ + M RG++PDG++ AS LPACS LEML G+
Sbjct: 232 PGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGR 291
Query: 304 EIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFI--SDKKIALWNAMITGYG 361
E+HAY L++ L NSFV SALVDMY + V RRVFD + +++ LWNAM+ GY
Sbjct: 292 EMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYA 351
Query: 362 QNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDR 421
Q DEEAL LF +ME AG+ P+ TT++ V+PAC RSE F KE +HG+ +K G+ +
Sbjct: 352 QAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNP 411
Query: 422 YVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQN- 480
+VQNALMD+Y+R+G +E ++ IF +E RD VSWNT+ITG + G DA L+REMQ
Sbjct: 412 FVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQ 471
Query: 481 --MEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATD 538
+ + + DE + PN++TLMT+LPGC L+A AKGKEIH YA+R+ L +D
Sbjct: 472 GRFTDATTEDGIAGTDEEPV--VPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSD 529
Query: 539 VVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVA 598
+ VGSALVDMYAKCGCL +R VFD +P RNVITWNV+IMAYGMHG G E + L MV
Sbjct: 530 IAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVM 589
Query: 599 EGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR 658
E KPNEVTFIA AACSHSGMV GM+LF+ MK ++G++P+PD +AC VD+LGR
Sbjct: 590 SN----EAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGR 645
Query: 659 AGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVL 718
AG++++AY +I M P + AWSS LGACR+H+NV +GEIAA+ LF LEPD ASHYVL
Sbjct: 646 AGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVL 705
Query: 719 LSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGF 778
L NIYS+A LW+K+ +VR +M++ GV KEPGCSWIE IH+F+AG+ +H +S +H
Sbjct: 706 LCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAH 765
Query: 779 LENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKN 838
++ L ERMR +GY PDTS VLH++ E EK +L HSEKLAIAFG+L TPPG TIRVAKN
Sbjct: 766 MDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKN 825
Query: 839 LRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
LRVCNDCH+A KFIS++ REI+LRDVRRFHHF +G CSCGDYW
Sbjct: 826 LRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 882 | ||||||
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.945 | 0.937 | 0.703 | 0.0 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.425 | 0.463 | 0.5 | 1.4e-157 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.476 | 0.476 | 0.449 | 1e-156 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.421 | 0.383 | 0.451 | 2.4e-155 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.424 | 0.430 | 0.443 | 1.5e-140 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.422 | 0.350 | 0.440 | 1.1e-135 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.425 | 0.473 | 0.469 | 1.6e-134 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.438 | 0.470 | 0.460 | 5.2e-134 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.628 | 0.704 | 0.388 | 1.1e-133 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.414 | 0.390 | 0.392 | 6.1e-131 |
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3126 (1105.5 bits), Expect = 0., P = 0.
Identities = 595/846 (70%), Positives = 697/846 (82%)
Query: 37 SQTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLG 96
SQ+R E WI+ LRS+ RSN REA+L+Y++M I+PDN+AFPA+LKAVA +QD+ LG
Sbjct: 57 SQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELG 116
Query: 97 KQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLC 156
KQIHAHV K+GYG+ SVTVANTLVN+Y KCG D VYKVFDRI+E++QVSWNS+I++LC
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCG-DFGAVYKVFDRISERNQVSWNSLISSLC 175
Query: 157 RFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWN 216
F KW++ALEAFR ML NVEPSSFTLVSV ACSNL +GL +G+QVH LR GE N
Sbjct: 176 SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 235
Query: 217 TFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMAL 276
+FI+N L+AMY KLG++ +K L SF RDLV+WNT++SSL QN++ LEA+ +LR+M L
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295
Query: 277 RGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVE 336
G++PD +I+SVLPACSHLEML TGKE+HAYAL+N L +NSFVGSALVDMYCNC++V
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355
Query: 337 CGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPAC 396
GRRVFD + D+KI LWNAMI GY QNE+D+EAL+LFI MEE AGL N+TTM+ VVPAC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 397 VRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWN 456
VRS AF KE IHG +K GL RDR+VQN LMDMYSR+G+I+I+ IF ME RD V+WN
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 475
Query: 457 TMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516
TMITGY H DAL+LL +MQN+E + ++ L KPNSITLMT+LP C A
Sbjct: 476 TMITGYVFSEHHEDALLLLHKMQNLERKVSKG----ASRVSL--KPNSITLMTILPSCAA 529
Query: 517 LSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVI 576
LSALAKGKEIHAYAI+N LATDV VGSALVDMYAKCGCL +R+VFD +P +NVITWNVI
Sbjct: 530 LSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVI 589
Query: 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKM 636
IMAYGMHG GQE ++LL+ M+ +G VKPNEVTFI++FAACSHSGMV EG+ +FY M
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQG-----VKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 637 KDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVE 696
K DYG+EPS DHYACVVDLLGRAG++++AYQL+NMMP +F+KAGAWSSLLGA RIH N+E
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFG 756
IGEIAAQNL LEP+VASHYVLL+NIYSSA LWDKA +VR+ MKE GVRKEPGCSWIE G
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHG 764
Query: 757 DEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSE 816
DE+HKF+AGD SH QSE+L G+LE L ERMRKEGYVPDTSCVLHNV E+EKE LLCGHSE
Sbjct: 765 DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSE 824
Query: 817 KLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTC 876
KLAIAFGILNT PGT IRVAKNLRVCNDCH ATKFISKI REIILRDVRRFH FKNGTC
Sbjct: 825 KLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTC 884
Query: 877 SCGDYW 882
SCGDYW
Sbjct: 885 SCGDYW 890
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1008 (359.9 bits), Expect = 1.4e-157, Sum P(2) = 1.4e-157
Identities = 191/382 (50%), Positives = 258/382 (67%)
Query: 501 KPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARR 560
KP++ T ++V+ LS K IH +R+ L +V V +ALVDMYAKCG + AR
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494
Query: 561 VFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620
+FD+M R+V TWN +I YG HG G+ LEL + M + G +KPN VTF+++ +AC
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM-----QKGTIKPNGVTFLSVISAC 549
Query: 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAG 680
SHSG+V G+ FY MK++Y IE S DHY +VDLLGRAG++ +A+ I MP +
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVK-PAVN 608
Query: 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740
+ ++LGAC+IH+NV E AA+ LF L PD ++VLL+NIY +A +W+K VR M
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668
Query: 741 EMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLH 800
G+RK PGCS +E +E+H F +G +H S++++ FLE L +++ GYVPDT+ VL
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL- 727
Query: 801 NVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREI 860
V + KE LL HSEKLAI+FG+LNT GTTI V KNLRVC DCH ATK+IS + REI
Sbjct: 728 GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREI 787
Query: 861 ILRDVRRFHHFKNGTCSCGDYW 882
++RD++RFHHFKNG CSCGDYW
Sbjct: 788 VVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 1.0e-156, Sum P(2) = 1.0e-156
Identities = 199/443 (44%), Positives = 268/443 (60%)
Query: 456 NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYD-----------LDETVLRPK--- 501
N +I Y CG+ GD+L + M + N V L T K
Sbjct: 447 NALIDMYAKCGEVGDSLKIFSSM-GTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEV 505
Query: 502 -PNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARR 560
P+ T + LP C +L+A GKEIH +R +++ +G+AL++MY+KCGCL + R
Sbjct: 506 VPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSR 565
Query: 561 VFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620
VF+ M R+V+TW +I AYGM+GEG++ LE +M G + P+ V FIA+ AC
Sbjct: 566 VFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSG-----IVPDSVVFIAIIYAC 620
Query: 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAG 680
SHSG+V EG+ F KMK Y I+P +HYACVVDLL R+ K+ A + I MP + D A
Sbjct: 621 SHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPD-AS 679
Query: 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740
W+S+L ACR ++E E ++ + L PD + +L SN Y++ + WDK +RK +K
Sbjct: 680 IWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLK 739
Query: 741 EMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLH 800
+ + K PG SWIE G +H F +GD S QSE ++ LE L M KEGY+PD V
Sbjct: 740 DKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQ 799
Query: 801 NVNEEE-KETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESRE 859
N+ EEE K L+CGHSE+LAIAFG+LNT PGT ++V KNLRVC DCH+ TK ISKI RE
Sbjct: 800 NLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGRE 859
Query: 860 IILRDVRRFHHFKNGTCSCGDYW 882
I++RD RFH FK+GTCSC D W
Sbjct: 860 ILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.4e-155, Sum P(2) = 2.4e-155
Identities = 171/379 (45%), Positives = 250/379 (65%)
Query: 505 ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDL 564
I++M V C L +L G+E HAYA++++L D + +L+DMYAK G + + +VF+
Sbjct: 598 ISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNG 657
Query: 565 MPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSG 624
+ ++ +WN +IM YG+HG +E ++L + M R G P+++TF+ + AC+HSG
Sbjct: 658 LKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM----QRTGH-NPDDLTFLGVLTACNHSG 712
Query: 625 MVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI-NMMPPEFDKAGAWS 683
++ EG+ +MK +G++P+ HYACV+D+LGRAG+++ A +++ M E D G W
Sbjct: 713 LIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEAD-VGIWK 771
Query: 684 SLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743
SLL +CRIHQN+E+GE A LF LEP+ +YVLLSN+Y+ W+ VR++M EM
Sbjct: 772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMS 831
Query: 744 VRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVN 803
+RK+ GCSWIE ++ F+ G+ E++ L ++ K GY PDT V H+++
Sbjct: 832 LRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLS 891
Query: 804 EEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILR 863
EEEK L GHSEKLA+ +G++ T GTTIRV KNLR+C DCH A K ISK+ REI++R
Sbjct: 892 EEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVR 951
Query: 864 DVRRFHHFKNGTCSCGDYW 882
D +RFHHFKNG CSCGDYW
Sbjct: 952 DNKRFHHFKNGVCSCGDYW 970
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
Identities = 171/386 (44%), Positives = 254/386 (65%)
Query: 501 KPNSITLMTVLPGCGALSA-LAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFAR 559
KPN T ++L C A +A + +GK+ H +AI++ L + + V SAL+ MYAK G + A
Sbjct: 491 KPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAE 550
Query: 560 RVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619
VF +++++WN +I Y HG+ + L++ K M + +VK + VTFI +FAA
Sbjct: 551 EVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM-----KKRKVKMDGVTFIGVFAA 605
Query: 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKA 679
C+H+G+V EG F M D I P+ +H +C+VDL RAG++E A ++I MP + A
Sbjct: 606 CTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP---NPA 662
Query: 680 GA--WSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRK 737
G+ W ++L ACR+H+ E+G +AA+ + ++P+ ++ YVLLSN+Y+ + W + VRK
Sbjct: 663 GSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRK 722
Query: 738 KMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSC 797
M E V+KEPG SWIE ++ + FLAGD SH +Q++ LE+LS R++ GY PDTS
Sbjct: 723 LMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSY 782
Query: 798 VLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIES 857
VL ++++E KE +L HSE+LAIAFG++ TP G+ + + KNLRVC DCH K I+KIE
Sbjct: 783 VLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEE 842
Query: 858 REIILRDVRRFHHFKN-GTCSCGDYW 882
REI++RD RFHHF + G CSCGD+W
Sbjct: 843 REIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 1.1e-135, Sum P(2) = 1.1e-135
Identities = 168/381 (44%), Positives = 246/381 (64%)
Query: 503 NSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVF 562
N+ T + + + + +GK++HA + ++ V +AL+ MYAKCG ++ A + F
Sbjct: 691 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF 750
Query: 563 DLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH 622
+ +N ++WN II AY HG G E L+ M+ V+PN VT + + +ACSH
Sbjct: 751 LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSN-----VRPNHVTLVGVLSACSH 805
Query: 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAW 682
G+V +G+ F M +YG+ P P+HY CVVD+L RAG + A + I MP + D A W
Sbjct: 806 IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD-ALVW 864
Query: 683 SSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV-RKKMKE 741
+LL AC +H+N+EIGE AA +L LEP+ ++ YVLLSN+Y+ ++ WD A D+ R+KMKE
Sbjct: 865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWD-ARDLTRQKMKE 923
Query: 742 MGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHN 801
GV+KEPG SWIE + IH F GD +H ++++H + ++L++R + GYV D +L+
Sbjct: 924 KGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE 983
Query: 802 VNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREII 861
+ E+K+ ++ HSEKLAI+FG+L+ P I V KNLRVCNDCH KF+SK+ +REII
Sbjct: 984 LQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREII 1043
Query: 862 LRDVRRFHHFKNGTCSCGDYW 882
+RD RFHHF+ G CSC DYW
Sbjct: 1044 VRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 1.6e-134, Sum P(2) = 1.6e-134
Identities = 179/381 (46%), Positives = 247/381 (64%)
Query: 502 PNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRV 561
PN +T+ +L C L AL+ GK +H + + V +AL+ MYAKCG + ARR+
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 562 FDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACS 621
FDLM +N +TWN +I YG+HG+GQE L + M+ G + P VTF+ + ACS
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG-----ITPTPVTFLCVLYACS 532
Query: 622 HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGA 681
H+G+V EG ++F M YG EPS HYAC+VD+LGRAG ++ A Q I M E +
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE-PGSSV 591
Query: 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741
W +LLGACRIH++ + ++ LF L+PD ++VLLSNI+S+ + + +A VR+ K+
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKK 651
Query: 742 MGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHN 801
+ K PG + IE G+ H F +GD SH Q ++++ LE L +MR+ GY P+T LH+
Sbjct: 652 RKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHD 711
Query: 802 VNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREII 861
V EEE+E ++ HSE+LAIAFG++ T PGT IR+ KNLRVC DCH TK ISKI R I+
Sbjct: 712 VEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIV 771
Query: 862 LRDVRRFHHFKNGTCSCGDYW 882
+RD RFHHFK+G CSCGDYW
Sbjct: 772 VRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 934 (333.8 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 181/393 (46%), Positives = 253/393 (64%)
Query: 490 VYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMY 549
+Y++ E N T ++VLP C AL +G ++H ++N L DV V ++L DMY
Sbjct: 437 MYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMY 496
Query: 550 AKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN 609
KCG L A +F +P N + WN +I +G HG G++ + L K M+ EG VKP+
Sbjct: 497 GKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG-----VKPD 551
Query: 610 EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669
+TF+ L +ACSHSG+V EG F M+ DYGI PS HY C+VD+ GRAG++E A + I
Sbjct: 552 HITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFI 611
Query: 670 NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729
M + D A W +LL ACR+H NV++G+IA+++LF +EP+ ++VLLSN+Y+SA W
Sbjct: 612 KSMSLQPD-ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKW 670
Query: 730 DKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKE 789
+ ++R G+RK PG S +E +++ F G+ +H E+++ L L +++
Sbjct: 671 EGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730
Query: 790 GYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQAT 849
GYVPD VL +V ++EKE +L HSE+LAIAF ++ TP TTIR+ KNLRVC DCH T
Sbjct: 731 GYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVT 790
Query: 850 KFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
KFISKI REII+RD RFHHFKNG CSCGDYW
Sbjct: 791 KFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 224/577 (38%), Positives = 350/577 (60%)
Query: 323 SALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGL 382
+A++ ++ +++ F+ ++++ I WN+MI+G+ Q YD AL +F KM + L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275
Query: 383 WPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKT 442
P+ T++SV+ AC E + IH H + G V NAL+ MYSR G +E ++
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335
Query: 443 IFDDMEVRDTV--SWNTMITGYTICGQHGDALMLLREMQNM------------EEEKNRN 488
+ + +D + ++ GY G A + +++ E+ +
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYG 395
Query: 489 NVYDLDETVLR--PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALV 546
+L +++ +PNS TL +L +L++L+ GK+IH A+++ V V +AL+
Sbjct: 396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALI 455
Query: 547 DMYAKCGCLNFARRVFDLMPV-RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGE 605
MYAK G + A R FDL+ R+ ++W +I+A HG +E LEL + M+ EG R
Sbjct: 456 TMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLR--- 512
Query: 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDA 665
P+ +T++ +F+AC+H+G+V++G F MKD I P+ HYAC+VDL GRAG +++A
Sbjct: 513 --PDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA 570
Query: 666 YQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725
+ I MP E D W SLL ACR+H+N+++G++AA+ L LLEP+ + Y L+N+YS+
Sbjct: 571 QEFIEKMPIEPDVV-TWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSA 629
Query: 726 AQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSER 785
W++A +RK MK+ V+KE G SWIE ++H F DG+H + +++ ++ + +
Sbjct: 630 CGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDE 689
Query: 786 MRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDC 845
++K GYVPDT+ VLH++ EE KE +L HSEKLAIAFG+++TP TT+R+ KNLRVCNDC
Sbjct: 690 IKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDC 749
Query: 846 HQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882
H A KFISK+ REII+RD RFHHFK+G CSC DYW
Sbjct: 750 HTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 146/372 (39%), Positives = 236/372 (63%)
Query: 511 LPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNV 570
L L+ L +G+++H A++ D + +A DMY+KCG + ++ R++
Sbjct: 572 LSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSL 631
Query: 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630
+WN++I A G HG +EV M+ G +KP VTF++L ACSH G+V +G+
Sbjct: 632 PSWNILISALGRHGYFEEVCATFHEMLEMG-----IKPGHVTFVSLLTACSHGGLVDKGL 686
Query: 631 DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACR 690
+ + D+G+EP+ +H CV+DLLGR+G++ +A I+ MP + + W SLL +C+
Sbjct: 687 AYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDL-VWRSLLASCK 745
Query: 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGC 750
IH N++ G AA+NL LEP+ S YVL SN++++ W+ +VRK+M ++K+ C
Sbjct: 746 IHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQAC 805
Query: 751 SWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETL 810
SW++ D++ F GD +H Q+ +++ LE++ + +++ GYV DTS L + +EE+KE
Sbjct: 806 SWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHN 865
Query: 811 LCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHH 870
L HSE+LA+A+ +++TP G+T+R+ KNLR+C+DCH KF+S++ R I+LRD RFHH
Sbjct: 866 LWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHH 925
Query: 871 FKNGTCSCGDYW 882
F+ G CSC DYW
Sbjct: 926 FERGLCSCKDYW 937
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7Y211 | PP285_ARATH | No assigned EC number | 0.6872 | 0.9739 | 0.9651 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 882 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-150 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-43 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 606 bits (1563), Expect = 0.0
Identities = 308/888 (34%), Positives = 478/888 (53%), Gaps = 53/888 (5%)
Query: 9 TLLPSPPLS-SLQTHQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFREAILSYI- 66
L P P L +H+ P LP R + + S + S + L +
Sbjct: 7 YLNPGKPNLFQLASHKAP----NVLPYWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALC 62
Query: 67 -------------EMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSV 113
M + D A+ A+ + + + G ++ + + L V
Sbjct: 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG-V 121
Query: 114 TVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLY 173
+ N +++M+ + G ++ + VF ++ E+D SWN ++ + G +D AL + ML+
Sbjct: 122 RLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 174 SNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGR 232
+ V P +T V C + L GR+VH + +R G E + ++NAL+ MY K G
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIP---DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 233 VDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPA 292
V A+ +F RD +SWN ++S +N + LE + M + PD ++I SV+ A
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 293 CSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIAL 352
C L G+E+H Y ++ +D S S L+ MY + +VF + K
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRMETKDAVS 356
Query: 353 WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHA 412
W AMI+GY +N ++AL + + E + P+ T++SV+ AC +H A
Sbjct: 357 WTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415
Query: 413 IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDAL 472
+ GL V NAL++MYS+ I+ + +F ++ +D +SW ++I G + + +AL
Sbjct: 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 473 MLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR 532
+ R+M +L KPNS+TL+ L C + AL GKEIHA+ +R
Sbjct: 476 IFFRQM------------------LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 533 NMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLEL 592
+ D + +AL+D+Y +CG +N+A F+ ++V++WN+++ Y HG+G +EL
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 593 LKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACV 652
MV G V P+EVTFI+L ACS SGMV++G++ F+ M++ Y I P+ HYACV
Sbjct: 577 FNRMVESG-----VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 653 VDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712
VDLLGRAGK+ +AY IN MP D A W +LL ACRIH++VE+GE+AAQ++F L+P+
Sbjct: 632 VDLLGRAGKLTEAYNFINKMPITPDPA-VWGALLNACRIHRHVELGELAAQHIFELDPNS 690
Query: 713 ASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQS 772
+Y+LL N+Y+ A WD+ VRK M+E G+ +PGCSW+E ++H FL D SH Q
Sbjct: 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750
Query: 773 EQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTT 832
++++ LE E+M+ G S + + E K+ + CGHSE+LAIAFG++NT PG
Sbjct: 751 KEINTVLEGFYEKMKASGLAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPGMP 809
Query: 833 IRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGD 880
I V KNL +C +CH KFISKI REI +RD +FHHFK+G CSCGD
Sbjct: 810 IWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 458 bits (1179), Expect = e-150
Identities = 205/553 (37%), Positives = 326/553 (58%), Gaps = 29/553 (5%)
Query: 335 VECG-----RRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTM 389
V+CG RR+FD + ++ +A W +I G EA LF +M E T +
Sbjct: 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 390 SSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV 449
+ + A ++ +H +K G+ D +V AL+DMYS+ G IE ++ +FD M
Sbjct: 229 VMLRASAGLGSARAGQQ-LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
Query: 450 RDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMT 509
+ TV+WN+M+ GY + G +AL L EM R++ +D+ T
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEM--------RDSGVSIDQ---------FTFSI 330
Query: 510 VLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRN 569
++ L+ L K+ HA IR D+V +ALVD+Y+K G + AR VFD MP +N
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEG 629
+I+WN +I YG HG G + +E+ + M+AEG V PN VTF+A+ +AC +SG+ +G
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEG-----VAPNHVTFLAVLSACRYSGLSEQG 445
Query: 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGAC 689
++F M +++ I+P HYAC+++LLGR G +++AY +I P + W++LL AC
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK-PTVNMWAALLTAC 504
Query: 690 RIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPG 749
RIH+N+E+G +AA+ L+ + P+ ++YV+L N+Y+S+ +A V + +K G+ P
Sbjct: 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
Query: 750 CSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKET 809
C+WIE + H F +GD H QS +++ L+ L + + + GYV + + +L +V+E+E++
Sbjct: 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKV 624
Query: 810 LLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFH 869
HSEKLAIAFG++NT T +++ ++ R+C DCH+ KFI+ + REI++RD RFH
Sbjct: 625 SGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFH 684
Query: 870 HFKNGTCSCGDYW 882
HFK G CSCGDYW
Sbjct: 685 HFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 1e-43
Identities = 123/491 (25%), Positives = 219/491 (44%), Gaps = 29/491 (5%)
Query: 10 LLPSPPLSSLQTHQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFREAI-LSYIEM 68
L P P + + T + G + C S IE L + REA+ L I
Sbjct: 61 LKPEPIRIEVSESKDARLDDTQIRKSGV-SLC--SQIEKL---VACGRHREALELFEILE 114
Query: 69 TRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGS 128
+ A+++A ++ + K ++ HV G+ + N ++ M+ KCG
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM-NRVLLMHVKCGM 173
Query: 129 DMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVAL 188
+ D ++FD + E++ SW ++I L G + A FR M + T V +
Sbjct: 174 -LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232
Query: 189 ACSNLSRRDGLRLGRQVHGNSLRVGEW-NTFIMNALMAMYAKLGRVDDAKTLFKSFEDRD 247
A + L R G+Q+H L+ G +TF+ AL+ MY+K G ++DA+ +F ++
Sbjct: 233 ASAGLG---SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 248 LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHA 307
V+WN++++ + + EA+ +M G+ D + + ++ S L +L+ K+ HA
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 308 YALRNDILIDNSFVG-SALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYD 366
+R +D V +ALVD+Y +E R VFD + K + WNA+I GYG +
Sbjct: 350 GLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407
Query: 367 EEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRD-----R 421
+A+ +F +M G+ PN T +V+ AC R ++ G I + + R
Sbjct: 408 TKAVEMFERM-IAEGVAPNHVTFLAVLSAC-RYSGLSEQ----GWEIFQSMSENHRIKPR 461
Query: 422 YVQNALM-DMYSRMGRIEISKTIFDDMEVRDTVS-WNTMITGYTICGQHGDALMLLREMQ 479
+ A M ++ R G ++ + + + TV+ W ++T I + ++
Sbjct: 462 AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521
Query: 480 NMEEEKNRNNV 490
M EK N V
Sbjct: 522 GMGPEKLNNYV 532
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 6e-43
Identities = 114/392 (29%), Positives = 186/392 (47%), Gaps = 26/392 (6%)
Query: 138 DRITEKDQVSWNSMIATLCRFGKWDLALEAFRMM-LYSNVEPSSFTLVSVALACSNLSRR 196
D K VS S I L G+ ALE F ++ + T ++ AC L
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS- 138
Query: 197 DGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIV 255
+R + V+ + G E + ++MN ++ M+ K G + DA+ LF +R+L SW TI+
Sbjct: 139 --IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII 196
Query: 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDIL 315
L + EA R+M G + + +L A + L G+++H L+ +
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV- 255
Query: 316 IDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIK 375
+ ++FV AL+DMY C ++E R VFD + +K WN+M+ GY + Y EEAL L+ +
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 376 MEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMG 435
M + +G+ + T S ++ R + H I+ G D AL+D+YS+ G
Sbjct: 316 MRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
Query: 436 RIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495
R+E ++ +FD M ++ +SWN +I GY G+ A+ + M + E
Sbjct: 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM--------------IAE 420
Query: 496 TVLRPKPNSITLMTVLPGCGALSALA-KGKEI 526
V PN +T + VL C S L+ +G EI
Sbjct: 421 GVA---PNHVTFLAVLSAC-RYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-31
Identities = 56/131 (42%), Positives = 75/131 (57%), Gaps = 21/131 (16%)
Query: 748 PGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEE- 806
PGC W E K L+GDGSH S E L +R++ EG VP+T + H+V+ EE
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 807 -----KETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREII 861
K LL H+EK A+A+G+L TT + R+C DCH+ ++I+K REII
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL-----TTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 862 LRDVRRFHHFK 872
+RD RFHHFK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 37/268 (13%)
Query: 432 SRMGRIEISKTIFDDMEVRDT-VSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNV 490
R+ E DD ++R + VS + I CG+H +AL L ++
Sbjct: 66 IRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILE-------AGCP 118
Query: 491 YDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550
+ L + T ++ C AL ++ K ++ + + D + + ++ M+
Sbjct: 119 FTLP---------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169
Query: 551 KCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610
KCG L ARR+FD MP RN+ +W II G +E L + M +GS
Sbjct: 170 KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-----DAEP 224
Query: 611 VTFIALFAACSHSGMVSEGMDLF-----YKMKDDYGIEPSPDHYAC-VVDLLGRAGKVED 664
TF+ + A + G G L + D +C ++D+ + G +ED
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD-------TFVSCALIDMYSKCGDIED 277
Query: 665 AYQLINMMPPEFDKAGAWSSLLGACRIH 692
A + + MP + AW+S+L +H
Sbjct: 278 ARCVFDGMPEK--TTVAWNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-11
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 54/248 (21%)
Query: 543 SALVDMYAKCGCLNFARRVFDLMPVRNV----ITWNVIIMAYGMHGEGQEVLELLKNMVA 598
AL+D A+ G + A + +M +NV + +N +I A G G ++L M A
Sbjct: 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 599 EGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD----------- 647
E + P+ +T AL AC+++G V ++ Y+M +Y I+ +P+
Sbjct: 571 ETH---PIDPDHITVGALMKACANAGQVDRAKEV-YQMIHEYNIKGTPEVYTIAVNSCSQ 626
Query: 648 ----HYAC--------------------VVDLLGRAGKVEDAYQLINMMPPEFDKAGA-- 681
+A +VD+ G AG ++ A++++ + K G
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 682 WSSLLGACRIHQNVEIG-----EIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVR 736
+SSL+GAC +N + +I + L P V++ L++ + QL KA++V
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIK---LRPTVSTMNALITALCEGNQL-PKALEVL 742
Query: 737 KKMKEMGV 744
+MK +G+
Sbjct: 743 SEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH 622
+V+T+N +I Y G+ +E L+L M G +KPN T+ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-----IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 58/232 (25%), Positives = 93/232 (40%), Gaps = 39/232 (16%)
Query: 535 LATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR----NVITWNVIIMAYGMHGEGQEVL 590
L D + + L+ AK G ++ VF M NV T+ +I G+
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ----- 522
Query: 591 ELLKNMVAEG-SRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDH 648
+ K A G R VKP+ V F AL +AC SG V D+ +MK + P PDH
Sbjct: 523 -VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPDH 579
Query: 649 --YACVVDLLGRAGKVEDAYQLINMM--------PPEFDKAGAWSSLLG----ACRIHQN 694
++ AG+V+ A ++ M+ P + A S G A I+ +
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 695 VEIGEIAAQNLFLLE-PDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVR 745
++ + +F DVA H A DKA ++ + ++ G++
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGH----------AGDLDKAFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 143 KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFT 182
D V++N++I C+ GK + AL+ F M ++P+ +T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 7e-06
Identities = 68/315 (21%), Positives = 114/315 (36%), Gaps = 52/315 (16%)
Query: 378 EVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRI 437
AG+ N T +++ C R+ G +G + DR V NAL+ + G +
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 438 EISKTIFDDMEVR------DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRN--- 488
+ + + +M+ D ++ ++ GQ A +E+ M E N
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA----KEVYQMIHEYNIKGTP 614
Query: 489 --------------------NVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHA 528
++YD D KP+ + ++ G L K EI
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYD-DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 529 YAIRNMLATDVVVGSALVDMYAKCGCLNFAR--------RVFDLMPVRNVITWNVIIMAY 580
A + + V S+L M A N+ + + L P V T N +I A
Sbjct: 674 DARKQGIKLGTVSYSSL--MGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITAL 729
Query: 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDY 640
+ + LE+L M G + PN +T+ L A G+DL + K+D
Sbjct: 730 CEGNQLPKALEVLSEMKRLG-----LCPNTITYSILLVASERKDDADVGLDLLSQAKED- 783
Query: 641 GIEPSPDHYACVVDL 655
GI+P+ C+ L
Sbjct: 784 GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 10/189 (5%)
Query: 222 ALMAMYAKLGRVDDAKTLFKSFEDRDLVS----WNTIVSSLSQNDKFLEAVMFLRQMALR 277
ALM A G+VD AK +++ + ++ + V+S SQ + A+ M +
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 278 GIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVEC 337
G+KPD V ++++ H LD EI A + I + + S+L+ N + +
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGACSNAKNWKK 702
Query: 338 GRRVFDFISDKK----IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVV 393
+++ I K ++ NA+IT + +AL + +M+ GL PN T S ++
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILL 761
Query: 394 PACVRSEAF 402
A R +
Sbjct: 762 VASERKDDA 770
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 247 DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSH 295
D+V++NT++ + K EA+ +M RGIKP+ + + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 62/296 (20%), Positives = 118/296 (39%), Gaps = 58/296 (19%)
Query: 558 ARRVFDLMPVRNVITWNVI--IMAYGMHGEGQ-EVLELLKNMVAEGSRGGEVKPNEVTFI 614
A R L+ + T+N++ + A +G VL L++ G +K + +
Sbjct: 425 AFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ------EAG--LKADCKLYT 476
Query: 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPP 674
L + C+ SG V ++F++M + G+E + + ++D RAG+V A+ +M
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 675 EFDKAG--AWSSLLGACRIHQNVE-----IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727
+ K +++L+ AC V+ + E+ A+ ++PD + L+ ++ Q
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET-HPIDPDHITVGALMKACANAGQ 594
Query: 728 LWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMR 787
+ D+A +V + + E ++ P + S Q F ++ + M+
Sbjct: 595 V-DRAKEVYQMIHEYNIKGTPEV-----------YTIAVNSCSQKGDW-DFALSIYDDMK 641
Query: 788 KEGYVPDTSCVLHNVNEEEKETLL------CGHSEKLAIAFGILN------TPPGT 831
K+G PD E GH+ L AF IL GT
Sbjct: 642 KKGVKPD-------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 17/56 (30%)
Query: 451 DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT 506
D V++NT+I GY G+ +AL L EM+ + + KPN T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMK-------KRGI----------KPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNVEP 178
++N+++ L + G DLAL M S ++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNV 176
V++NS+I+ C+ GK + ALE F+ M V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 453 VSWNTMITGYTICGQHGDALMLLREMQNM 481
V++N++I+GY G+ +AL L +EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 68/337 (20%), Positives = 133/337 (39%), Gaps = 75/337 (22%)
Query: 115 VANTLVNMYGKCGSDMWDVYKVFDRITE---------KDQVSWNSMIATLCRFGKWDLAL 165
V N L++ G+ G+ V + FD + E D ++ +++ G+ D A
Sbjct: 544 VFNALISACGQSGA----VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 166 EAFRMMLYSNVE--PSSFTLV--------SVALACSNLSRRDGLRLGRQ----------- 204
E ++M+ N++ P +T+ A S D + G +
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS--IYDDMKKKGVKPDEVFFSALVD 657
Query: 205 VHGNSLRVGEWNTFIMNA--------------LMAMYAKLGRVDDAKTLF---KSFEDRD 247
V G++ + + + +A LM + A L+ KS + R
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 248 LVS-WNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIH 306
VS N ++++L + ++ +A+ L +M G+ P+ ++ + +L A + D G ++
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 307 AYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMIT---GYGQ- 362
+ A + I + V C C C RR +K AL +++ G Q
Sbjct: 778 SQAKEDG--IKPNLV-------MCRCITGLCLRRF-----EKACALGEPVVSFDSGRPQI 823
Query: 363 -NEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR 398
N++ ALM++ + AG P +S V+ C++
Sbjct: 824 ENKWTSWALMVYRETIS-AGTLPTMEVLSQVL-GCLQ 858
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEG 600
+T+N +I Y G+ +E LEL K M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPD 282
V++NT++ L + + EA+ ++M RGI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSS 180
V++N++I LC+ G+ + ALE F+ M +EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.002
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 425 NALMDMYSRMGRIEISKTIFDDMEVR----DTVSWNTMITGY 462
N L+D Y + G++E + +F++M+ R + +++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 353 WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR 398
+N +I GY + EEAL LF +M++ G+ PN T S ++ +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 353 WNAMITGYGQNEYDEEALMLFIKMEE 378
+N++I+GY + EEAL LF +M+E
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 882 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.26 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.25 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.04 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.03 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.03 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.98 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.96 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.9 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.9 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.78 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.57 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.56 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.53 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.52 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.47 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.39 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.37 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.37 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.3 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.21 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.15 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.86 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.54 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.41 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.4 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.3 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.15 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.08 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.88 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.73 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.66 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.49 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.47 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.34 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.32 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.26 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.19 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.98 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 95.97 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.43 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.31 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.19 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.18 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.07 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.92 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.87 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.33 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.21 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.68 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.56 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.16 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.51 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.38 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.11 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.9 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.79 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.73 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.1 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 89.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.04 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.33 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.23 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.75 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.63 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.07 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 86.72 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.61 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.32 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.23 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.16 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 85.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.43 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.9 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.65 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.91 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.34 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.06 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.14 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.87 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.56 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-155 Score=1394.53 Aligned_cols=811 Identities=37% Similarity=0.678 Sum_probs=799.1
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHH
Q 002772 37 SQTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVA 116 (882)
Q Consensus 37 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 116 (882)
++.++..++|.++.+|++.|++.+|..+|+.|...|+.|+..+|..++.+|.+.+.+..|.++|..+.+.+.. ++..++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHH
Confidence 3566778899999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcc
Q 002772 117 NTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRR 196 (882)
Q Consensus 117 ~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 196 (882)
|+||++|+++| +++.|.++|++|++||+++||+||++|++.|++++|+++|++|...|+.||.+||+++|++|+..
T Consensus 125 n~li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~--- 200 (857)
T PLN03077 125 NAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI--- 200 (857)
T ss_pred HHHHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc---
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMA 275 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 275 (882)
+++..++++|..+.+.| .+|+.++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHH
Q 002772 276 LRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNA 355 (882)
Q Consensus 276 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 355 (882)
+.|+.||..||+.++.+|++.|+++.|+++|..+.+.| +.+|..+||+||++|+++|++++|.++|++|..+|+++||+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 002772 356 MITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMG 435 (882)
Q Consensus 356 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 435 (882)
||.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..+||+||++|+++|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhc
Q 002772 436 RIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCG 515 (882)
Q Consensus 436 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~ 515 (882)
++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~------------------~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL------------------TLKPNSVTLIAALSACA 500 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh------------------CCCCCHhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKN 595 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 595 (882)
+.|+++.++++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCC
Q 002772 596 MVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPE 675 (882)
Q Consensus 596 m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~ 675 (882)
|.+.| ++||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+|+|++++|.+++++|+.+
T Consensus 580 M~~~g-----~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 580 MVESG-----VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred HHHcC-----CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 99999 9999999999999999999999999999999977899999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEe
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEF 755 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 755 (882)
|+.. +|++|+++|+.|||.+.|+.+++++++++|+++++|++|+|+|+..|+|++|.++++.|+++|++|+||+|||++
T Consensus 655 pd~~-~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 655 PDPA-VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhHHHHHHHHhhhcCCCCCeEEE
Q 002772 756 GDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEKETLLCGHSEKLAIAFGILNTPPGTTIRV 835 (882)
Q Consensus 756 ~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~se~la~~~~~~~~~~~~~~~~ 835 (882)
++++|.|++||.+||+.++||.+|++|..+|++.||+||+..++++ ++++|+..+++||||||+|||||+||+|+||||
T Consensus 734 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i 812 (857)
T PLN03077 734 KGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWV 812 (857)
T ss_pred CCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEE
Confidence 9999999999999999999999999999999999999999998854 778999999999999999999999999999999
Q ss_pred EcccccCcchhHhhhhhhcccceeEEEecCCccccccCccccCCC
Q 002772 836 AKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGD 880 (882)
Q Consensus 836 ~~n~~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 880 (882)
+||||||+|||+++||||++++|||||||.+|||||+||+|||||
T Consensus 813 ~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 813 TKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-125 Score=1104.27 Aligned_cols=613 Identities=34% Similarity=0.624 Sum_probs=604.7
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHH
Q 002772 245 DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRG-IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGS 323 (882)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 323 (882)
.++.++|+.+|.+|++.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|+++|..+.+.| +.+|..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 3577899999999999999999999999999864 78999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCc
Q 002772 324 ALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 324 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~ 403 (882)
.|+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.++.+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999 77999999999999999999999999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 483 (882)
.+.++|..+.+.|+.+|..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|+.++|+++|++|.+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--- 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD--- 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 002772 484 EKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFD 563 (882)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 563 (882)
. |+.||..||++++.+|++.|.+++|.++|..+.+.|+.+|..+||+||++|+|+|++++|.++|+
T Consensus 319 ~--------------g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 319 S--------------GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred c--------------CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 6 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002772 564 LMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE 643 (882)
Q Consensus 564 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 643 (882)
+|..||+.+||+||.+|+++|+.++|+++|++|.+.| +.||.+||++++.+|++.|++++|.++|+.|.+++|+.
T Consensus 385 ~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-----~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-----VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999888999
Q ss_pred CChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 644 PSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 644 p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
|+..||++||++|+|+|++++|.+++++|+..|+.. +|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccc
Q 002772 724 SSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVN 803 (882)
Q Consensus 724 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~ 803 (882)
++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||.+||+.++|+.+|++|..+|++.||+||+.+++||++
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhcCCCCCeEEEEcccccCcchhHhhhhhhcccceeEEEecCCccccccCccccCCCCC
Q 002772 804 EEEKETLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIESREIILRDVRRFHHFKNGTCSCGDYW 882 (882)
Q Consensus 804 ~~~~~~~~~~~se~la~~~~~~~~~~~~~~~~~~n~~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~~ 882 (882)
+++|+..+++||||||+|||||+||+|+||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||||||
T Consensus 619 ~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 619 EDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-84 Score=775.17 Aligned_cols=577 Identities=31% Similarity=0.541 Sum_probs=561.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHh
Q 002772 38 QTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVAN 117 (882)
Q Consensus 38 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 117 (882)
+.||+++||.+|.+|++.|++++|+.+|++|...|+.||..||+.+|++|+..+++..+.++|..+.+.|+. ++..++|
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~n 226 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE-LDVDVVN 226 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC-cccchHh
Confidence 568999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCccc
Q 002772 118 TLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRD 197 (882)
Q Consensus 118 ~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 197 (882)
+||.+|+++| ++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+.. +
T Consensus 227 ~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~---g 302 (857)
T PLN03077 227 ALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL---G 302 (857)
T ss_pred HHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---C
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002772 198 GLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMAL 276 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (882)
+++.++++|..+.+.| .+|..+||+||.+|+++|++++|.++|++|.+||.++||+||.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHH
Q 002772 277 RGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356 (882)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 356 (882)
.|+.||..||++++.+|++.|+++.|.++|+.+.+.| +.++..++|+||++|+++|++++|.++|++|.++|+++||+|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
|.+|+++|+.++|+++|++| . .++.||..||+.+|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+|+|+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m-~-~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQM-L-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHH-H-hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999 6 469999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcC
Q 002772 437 IEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 437 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
+++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+ . |+.||.+||+.+|.+|++
T Consensus 540 ~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~--------------g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 540 MNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE---S--------------GVNPDEVTFISLLCACSR 601 (857)
T ss_pred HHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---c--------------CCCCCcccHHHHHHHHhh
Confidence 99999999999 89999999999999999999999999999998 6 999999999999999999
Q ss_pred cchHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHH
Q 002772 517 LSALAKGKEIHAYAI-RNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLK 594 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~ 594 (882)
.|.+++|.++++.|. +.|+.|+..+|++++++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999999 78999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002772 595 NMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 595 ~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
++.+ +.|+ ...|..+.+.|+..|++++|.++.+.|.+. |+++++..
T Consensus 682 ~l~~-------l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 682 HIFE-------LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHHh-------hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCCc
Confidence 9988 4576 456777778999999999999999999997 99887644
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=644.37 Aligned_cols=435 Identities=23% Similarity=0.377 Sum_probs=423.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHh
Q 002772 39 TRCKESWIESLRSEARSNQFREAILSYIEMTRSD-IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVAN 117 (882)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 117 (882)
.++.++|+.+|.++.+.|++.+|+.+|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.|+. +|..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHH
Confidence 3456799999999999999999999999999864 7899999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCccc
Q 002772 118 TLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRD 197 (882)
Q Consensus 118 ~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 197 (882)
.|+++|+++| ++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|+.. +
T Consensus 163 ~Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---~ 238 (697)
T PLN03081 163 RVLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL---G 238 (697)
T ss_pred HHHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC---C
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred chHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002772 198 GLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMAL 276 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (882)
..+.++++|..+.+.| .+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHH
Q 002772 277 RGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356 (882)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 356 (882)
.|+.||..||++++.+|++.|+++.|+++|..+.+.| +++|..++|+||++|+++|++++|.++|++|.++|+++||+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHH-hCCCCchHHHHHHHHHHHhcC
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIK-LGLGRDRYVQNALMDMYSRMG 435 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g 435 (882)
|.+|++.|+.++|+++|++| ...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 398 I~~y~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 99999999999999999999 7899999999999999999999999999999999986 699999999999999999999
Q ss_pred ChHHHHHHHhhCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 436 RIEISKTIFDDME-VRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 436 ~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
++++|.++|++|. .|+..+|++|+.+|...|+.+.|..+++++.+
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999999997 67889999999999999999999999998864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=623.34 Aligned_cols=524 Identities=15% Similarity=0.189 Sum_probs=469.0
Q ss_pred CCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHH
Q 002772 73 IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMI 152 (882)
Q Consensus 73 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li 152 (882)
..++...|..++..|.+.|+++.|.++++.|.+.|+.+++...++.++..|.+.| .+++|.++|+.|+.||..+||.+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677888888888888888888888888888865477777888888888888 888888888888888888888888
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCC
Q 002772 153 ATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGR 232 (882)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~ 232 (882)
.+|++.|++++|+++|++|.+.|+.||..+ ||+||.+|+++|+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t-------------------------------------ynsLI~~y~k~G~ 487 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKL-------------------------------------YTTLISTCAKSGK 487 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-------------------------------------HHHHHHHHHhCcC
Confidence 888888888888888888888888887666 5777777888899
Q ss_pred hhHHHHHHhcCC----CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHH
Q 002772 233 VDDAKTLFKSFE----DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAY 308 (882)
Q Consensus 233 ~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 308 (882)
+++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|..
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--hCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC----CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 002772 309 ALR--NDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK----KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGL 382 (882)
Q Consensus 309 ~~~--~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~ 382 (882)
|.+ .| +.||..+|++||++|+++|++++|.++|+.|.+. +..+||++|.+|++.|++++|+++|++| ...|+
T Consensus 568 M~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv 645 (1060)
T PLN03218 568 MKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGV 645 (1060)
T ss_pred HHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCC
Confidence 986 56 8899999999999999999999999999999865 4579999999999999999999999999 88999
Q ss_pred CCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC----CCCeeeHHHH
Q 002772 383 WPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME----VRDTVSWNTM 458 (882)
Q Consensus 383 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~l 458 (882)
.||..||+.++.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+|
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCc
Q 002772 459 ITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATD 538 (882)
Q Consensus 459 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 538 (882)
|.+|++.|++++|+++|++|.. . |+.||..||++++.+|++.|+++.|.++|..|.+.|+.||
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~---~--------------Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKR---L--------------GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---c--------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999998 6 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH----HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 539 VVVGSALVDMY----AKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 539 ~~~~~~li~~y----~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
..+|++|++++ .+++...++...|+.+...+...|+ ++|+.+|++|++.| +.||.+||+
T Consensus 789 ~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~G-----i~Pd~~T~~ 851 (1060)
T PLN03218 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAG-----TLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCC-----CCCCHHHHH
Confidence 99999999874 4445554455555544444444554 56999999999999 999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
.++.+++..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++|.
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9998888888999998888888765 7888899999999998543 478999999983
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=583.04 Aligned_cols=548 Identities=17% Similarity=0.232 Sum_probs=478.5
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCccc-----HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhh
Q 002772 214 EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVS-----WNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIAS 288 (882)
Q Consensus 214 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 288 (882)
..+...|..++..++++|++++|+++|++|++++... ++.++.+|.+.|.+++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 6677788888899999999999999999999876654 45667779999999999999999975 99999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC----CCCceehHHHHHHHhcCC
Q 002772 289 VLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS----DKKIALWNAMITGYGQNE 364 (882)
Q Consensus 289 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g 364 (882)
+|.+|++.|+++.|.++|+.|.+.| +.||..+|++||.+|+++|++++|.++|++|. .+|+.+||+||.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999 99999999999999999999999999999998 478899999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHH--hCCCCchHHHHHHHHHHHhcCChHHHHH
Q 002772 365 YDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIK--LGLGRDRYVQNALMDMYSRMGRIEISKT 442 (882)
Q Consensus 365 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 442 (882)
++++|+++|++| ...|+.||..||+.+|.+|++.|++++|.++|.+|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 522 ~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999 8899999999999999999999999999999999986 6889999999999999999999999999
Q ss_pred HHhhCC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcc
Q 002772 443 IFDDME----VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALS 518 (882)
Q Consensus 443 ~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~ 518 (882)
+|+.|. .++..+||++|.+|++.|++++|+++|++|.+ . |+.||..||++++.+|++.|
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---~--------------Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---K--------------GVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--------------CCCCCHHHHHHHHHHHHhCC
Confidence 999998 44678999999999999999999999999998 6 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHccCChhHHHHHHH
Q 002772 519 ALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP----VRNVITWNVIIMAYGMHGEGQEVLELLK 594 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 594 (882)
++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 7999999999999999999999999999
Q ss_pred HHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh----ccC----------
Q 002772 595 NMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG----RAG---------- 660 (882)
Q Consensus 595 ~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~----r~g---------- 660 (882)
+|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++
T Consensus 744 eM~~~G-----i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~ 817 (1060)
T PLN03218 744 EMKRLG-----LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFD 817 (1060)
T ss_pred HHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 999999 9999999999999999999999999999999987 99999999999997643 222
Q ss_pred ---------CHHHHHHHHHhC---CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh-cCCCCCCchHHHHHHHHHHcC
Q 002772 661 ---------KVEDAYQLINMM---PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF-LLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 661 ---------~~~eA~~~~~~m---~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~y~~~g 727 (882)
..++|..+|++| ...|+.. +|.+++.++...+..+.+...++... +-.+.+..+|..|.+.+ |
T Consensus 818 ~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~ 893 (1060)
T PLN03218 818 SGRPQIENKWTSWALMVYRETISAGTLPTME-VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---G 893 (1060)
T ss_pred ccccccccchHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---c
Confidence 346799999998 3679988 99999977777778888877776533 33455677888888876 4
Q ss_pred Cc-hHHHHHHHHHHhCCCccCCce---eEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccc
Q 002772 728 LW-DKAMDVRKKMKEMGVRKEPGC---SWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHN 801 (882)
Q Consensus 728 ~~-~~a~~~~~~m~~~g~~~~~~~---s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~ 801 (882)
++ ++|..++++|.+.|+.+.... .|. -.+|.|-.| ..--.+...|..|.......-..|.-...++.
T Consensus 894 ~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~---~d~~~~~~~----aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 894 EYDPRAFSLLEEAASLGVVPSVSFKKSPIV---IDAEELPVF----AAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred cChHHHHHHHHHHHHcCCCCCcccccCceE---EEcccCcch----hHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 44 589999999999999877642 232 123333222 11223455666666665432245654444555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=363.61 Aligned_cols=659 Identities=10% Similarity=-0.011 Sum_probs=341.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHH
Q 002772 40 RCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTL 119 (882)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 119 (882)
.+...|..+...+...|++++|...|++.....+ .+...+..+...+...|+++.|...++.+.+... .+.......
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ 267 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAP--NSPLAHYLK 267 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHH
Confidence 3455677777788888888888888888876542 3455666777777788888888888887777653 333333333
Q ss_pred HHHHHhcCCCHHHHHHHHhccCCC--C-ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcc
Q 002772 120 VNMYGKCGSDMWDVYKVFDRITEK--D-QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRR 196 (882)
Q Consensus 120 i~~y~~~g~~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 196 (882)
...+...| ++++|...|+...+. + ...+..+...+...|++++|...|+.+.+.. ..+...+..+...+...
T Consensus 268 ~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~--- 342 (899)
T TIGR02917 268 ALVDFQKK-NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRL--- 342 (899)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC---
Confidence 33444556 677777776655432 1 1223333444555666666666666655432 11222333333444444
Q ss_pred cchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
++.+.+...+..+....+.+..+++.+...|.+.|++++|.++|+.+.+ .+...|..+...+...|++++|++.|+.
T Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 5555555555555554444555555555666666666666666655432 1233444444555555555555555555
Q ss_pred HHHCCC---------------------------------CCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchh
Q 002772 274 MALRGI---------------------------------KPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSF 320 (882)
Q Consensus 274 m~~~g~---------------------------------~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 320 (882)
+.+... .++..++..+...+...|+.++|.+.+..+++.. +.+..
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~ 500 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFP 500 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHH
Confidence 544321 2233344444444444444445554444444432 33334
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhh
Q 002772 321 VGSALVDMYCNCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACV 397 (882)
Q Consensus 321 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~ 397 (882)
.+..+...|...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|.++.. . -+.+...+..+...+.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-L-NPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHH
Confidence 444444444444555555544444432 1233444444444455555555555544411 1 1112223334444444
Q ss_pred cCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeeeHHHHHHHHHhcCCHHHHHHH
Q 002772 398 RSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME---VRDTVSWNTMITGYTICGQHGDALML 474 (882)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 474 (882)
..|+++.|..++..+.+.. +.+..++..+...|.+.|++++|...|+.+. ..+...|..+...|.+.|++++|...
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555544322 3334445555555555555555555555443 11333444455555555555555555
Q ss_pred HHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 002772 475 LREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGC 554 (882)
Q Consensus 475 ~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~ 554 (882)
|+++.+ ..+.+..++..+...+...|+++.|.+++..+.+.. +.+...+..+...|.+.|+
T Consensus 658 ~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 658 LKRALE------------------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHh------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 555543 222233444455555555555555555555554443 2344445555555555555
Q ss_pred HHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHH
Q 002772 555 LNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDL 632 (882)
Q Consensus 555 ~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~ 632 (882)
+++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++++.. +.+...+..+...|...|+.++|.++
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH------PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 555555555543 3333445555555555555555555555555532 22344455555555555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 633 FYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 633 ~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
|+++.+. -+++...+..+..++.+.|+ ++|+++++++ ...|+....|..+..++...|+.+.|...++++++.+|.
T Consensus 793 ~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5555542 23344555555555555555 5555555543 234444445555555555556666666666666666665
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 712 VASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 712 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
++.++..++.+|.+.|++++|.+++++|
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555556666666666666666555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=356.86 Aligned_cols=658 Identities=12% Similarity=0.076 Sum_probs=460.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHH
Q 002772 41 CKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLV 120 (882)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 120 (882)
+...|..+...+...|++.+|...++.+.... +++...+..+...+...|+++.|...+..+.+.. |.++.++..++
T Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~ 234 (899)
T TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLALA 234 (899)
T ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 45578888899999999999999999988754 3455677778888889999999999999998876 47788889999
Q ss_pred HHHHhcCCCHHHHHHHHhccCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChh-hHHHHHHHhccCCcc
Q 002772 121 NMYGKCGSDMWDVYKVFDRITE--K-DQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSF-TLVSVALACSNLSRR 196 (882)
Q Consensus 121 ~~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~ 196 (882)
..+...| ++++|...|+.+.+ | +...+......+...|++++|+..|+.+.+.+ |+.. .+..+-..+...
T Consensus 235 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~--- 308 (899)
T TIGR02917 235 TILIEAG-EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQL--- 308 (899)
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHc---
Confidence 9999999 99999999988754 2 33334444455667899999999999998754 4422 222233345556
Q ss_pred cchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
++++.+...+..+++..+.+...+..+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.+.|++
T Consensus 309 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999988877788889999999999999999999998764 3566889999999999999999999999
Q ss_pred HHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---Cc
Q 002772 274 MALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KI 350 (882)
Q Consensus 274 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~ 350 (882)
+.+... .+...+..+...+...|+.+.|.+.+..+.+.. +........++..|.+.|++++|..+++.+... +.
T Consensus 389 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 465 (899)
T TIGR02917 389 ATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Confidence 987532 234456666667777888888888887777654 333444555566666666666666666665432 33
Q ss_pred eehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCC-cchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHH
Q 002772 351 ALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPN-ATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429 (882)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 429 (882)
.+|+.+...|...|++++|.+.|+++.. ..|+ ...+..+...+...|++++|.+.+..+.+.. +.+..++..+..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALS---IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 4566666666666666666666666521 2222 2233444444555555555555555555433 223444444445
Q ss_pred HHHhcCChHHHHHHHhh----------------------------------CC---CCCeeeHHHHHHHHHhcCCHHHHH
Q 002772 430 MYSRMGRIEISKTIFDD----------------------------------ME---VRDTVSWNTMITGYTICGQHGDAL 472 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~----------------------------------m~---~~~~~~~~~li~~~~~~g~~~~A~ 472 (882)
.|.+.|+.++|...|++ +. ..+...|..+...|...|++++|+
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554444 43 113334555555555555555555
Q ss_pred HHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 002772 473 MLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKC 552 (882)
Q Consensus 473 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 552 (882)
..|+++.+ ..+.+...+..+...+...|+.++|..++..+.+.. +.+...+..++..+.+.
T Consensus 622 ~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 622 SSFKKLLA------------------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 55555543 122233445555555566666666666666665533 22455566666666666
Q ss_pred CCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHH
Q 002772 553 GCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEG 629 (882)
Q Consensus 553 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 629 (882)
|++++|.++++.+. ..+...|..+...+...|++++|++.|+++...+ |+..++..+..++.+.|++++|
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-------PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHCCCHHHH
Confidence 66666666666665 3345566666777777777777777777777743 5556677777778888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL 708 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 708 (882)
.+.++.+.+. .+.+...+..+...|.+.|+.++|.+.++++ ...|+...++..+...+...|+ +.|...+++++++
T Consensus 756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 8888887763 3456777888888888888888888888876 3456666588888888888888 7788889999988
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 709 EPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 709 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 89888888889999999999999999998887765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=253.52 Aligned_cols=106 Identities=70% Similarity=1.149 Sum_probs=98.7
Q ss_pred ceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhHHHHHH
Q 002772 749 GCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMRKEGYVPDTSCVLHNVNEEEK--------ETLLCGHSEKLAI 820 (882)
Q Consensus 749 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~se~la~ 820 (882)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999987 9999999999998 455678889999999999998888766 5689999999999
Q ss_pred HHhhhcCCCCCeEEEEccc-ccCcchhHhhhhhhcccceeEEEecCCcccccc
Q 002772 821 AFGILNTPPGTTIRVAKNL-RVCNDCHQATKFISKIESREIILRDVRRFHHFK 872 (882)
Q Consensus 821 ~~~~~~~~~~~~~~~~~n~-~~c~~~h~~~~~~s~~~~~~~~~~d~~~~h~~~ 872 (882)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-24 Score=263.94 Aligned_cols=632 Identities=11% Similarity=0.032 Sum_probs=440.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhc
Q 002772 48 SLRSEARSNQFREAILSYIEMTRSDIQP-DNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKC 126 (882)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 126 (882)
..+.....++.+.|...++++... .| ++..+..+...+...|+.++|.+.++.+.+..+ .++........ +.
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~-~~-- 106 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTT-ML-- 106 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHH-HH--
Confidence 345566777777777777777664 33 445566666777777777777777777777663 23222110000 00
Q ss_pred CCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHH-HHHH-hccCCcccchHHHHH
Q 002772 127 GSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVS-VALA-CSNLSRRDGLRLGRQ 204 (882)
Q Consensus 127 g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~-~~~~~~~~~~~~~~~ 204 (882)
...|+...+-.+...+.+.|++++|+..|+.+.... .|+. .+.. .... .... +..+.+..
T Consensus 107 -------------~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~-~la~~y~~~~~~~~---g~~~~A~~ 168 (1157)
T PRK11447 107 -------------LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL-DLAVEYWRLVAKLP---AQRPEAIN 168 (1157)
T ss_pred -------------hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh-HHHHHHHHHHhhCC---ccHHHHHH
Confidence 001111222333445566677777777777665432 2221 1111 1111 1122 55666777
Q ss_pred HHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCc------c-----------------cHHHHHHHHHcC
Q 002772 205 VHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDL------V-----------------SWNTIVSSLSQN 261 (882)
Q Consensus 205 ~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~------~-----------------~~~~li~~~~~~ 261 (882)
.+..+++..+.+..++..|...+...|+.++|++.|+++..... . .+...+..+-..
T Consensus 169 ~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 169 QLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 77766666655666777888888888888888888887643211 0 112222222222
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHH
Q 002772 262 DKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRV 341 (882)
Q Consensus 262 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 341 (882)
....+|...+..+......|+... ...-.++...|++++|...++.+++.. +.+..++..|...|.+.|++++|...
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334556666666554433333222 122345667899999999999999875 67888999999999999999999999
Q ss_pred HhccCCCCc-----eehHHH------------HHHHhcCCChHHHHHHHHHHHHHcCCCCC-cchHhhHHhHhhcCCCCc
Q 002772 342 FDFISDKKI-----ALWNAM------------ITGYGQNEYDEEALMLFIKMEEVAGLWPN-ATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 342 f~~m~~~~~-----~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~ 403 (882)
|++..+.+. ..|..+ ...+.+.|++++|+..|++... ..|+ ...+..+...+...|+++
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~---~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ---VDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 988765322 123222 3456789999999999999933 3444 445666778889999999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC------------eeeHHHHHHHHHhcCCHHHH
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD------------TVSWNTMITGYTICGQHGDA 471 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A 471 (882)
+|++.++.+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|
T Consensus 403 eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 403 AAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999865 344566677777775 467899999998775321 22345567788899999999
Q ss_pred HHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002772 472 LMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550 (882)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 550 (882)
++.|++.++ ..|+ ...+..+...+...|+.++|...++.+++... .+...+..+...+.
T Consensus 481 ~~~~~~Al~-------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 481 AELQRQRLA-------------------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 999999986 3454 44566777889999999999999999987542 34445555566778
Q ss_pred hcCCHHHHHHHHhhCCCC----Chh---------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH
Q 002772 551 KCGCLNFARRVFDLMPVR----NVI---------TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF 617 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll 617 (882)
+.|+.++|...++.+... +.. .+..+...+...|+.++|+++++. .+++...+..+.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----------~p~~~~~~~~La 610 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----------QPPSTRIDLTLA 610 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----------CCCCchHHHHHH
Confidence 899999999999988622 111 123456678899999999999872 345556677888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
..+...|+.++|++.|+...+. -+.+...+..++.+|...|++++|.+.++... ..|+...++..+..++...|+.+
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999874 23357889999999999999999999999864 56777768888999999999999
Q ss_pred HHHHHHHHHhcCCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHHH-hCCC
Q 002772 697 IGEIAAQNLFLLEPDVAS------HYVLLSNIYSSAQLWDKAMDVRKKMK-EMGV 744 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~-~~g~ 744 (882)
.|...++++++..|+++. .+..++.+|...|++++|...+++.. ..|+
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 999999999998876654 56677999999999999999988764 3344
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-22 Score=246.60 Aligned_cols=610 Identities=12% Similarity=0.042 Sum_probs=418.6
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC--CCceeHHHHHHHHHhcC
Q 002772 82 AVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE--KDQVSWNSMIATLCRFG 159 (882)
Q Consensus 82 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 159 (882)
...+.+...++.+.|.+.+.++.... |.++.++..++..+.+.| +.++|.+.+++..+ |+...+..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g-~~~~A~~~l~~l~~~~P~~~~~~~--------- 100 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQG-DSDGAQKLLDRLSQLAPDSNAYRS--------- 100 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCChHHHH---------
Confidence 33455555666666666666665543 355666666666666666 66666666665543 22111100
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHH-HHHHHhcCChhHHHH
Q 002772 160 KWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNAL-MAMYAKLGRVDDAKT 238 (882)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~L-i~~y~~~g~~~~A~~ 238 (882)
+...+.. ..|+.......-..+... +..+.|.+.+..+.+..+++....... .......|+.++|++
T Consensus 101 -------~~~~~~~--~~~~~~~~l~~A~ll~~~---g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 101 -------SRTTMLL--STPEGRQALQQARLLATT---GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred -------HHHHHHh--cCCchhhHHHHHHHHHhC---CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHH
Confidence 0000000 011211122222334445 889999999999988764443321111 122234699999999
Q ss_pred HHhcCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC----------------Chh---hHhhHHHHhccC
Q 002772 239 LFKSFED--R-DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP----------------DGV---SIASVLPACSHL 296 (882)
Q Consensus 239 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------------d~~---t~~~ll~a~~~~ 296 (882)
.|+.+.+ | +...+..+...+...|+.++|+..|+++....... +.. .+...+..+-..
T Consensus 169 ~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 169 QLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 9998875 3 45578888899999999999999999987642110 000 111112222222
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHH
Q 002772 297 EMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLF 373 (882)
Q Consensus 297 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 373 (882)
...+.+...+....+.. ..++ .....+...+...|++++|...|++.... +...+..+...|.+.|++++|+..|
T Consensus 249 ~~~~~A~~~L~~~~~~~-~dp~-~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQL-ADPA-FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred hHHHHHHHHHHHHHHhc-cCcc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22344444444443322 1222 12234456778899999999999987653 5668899999999999999999999
Q ss_pred HHHHHHcCCCCCcc---hH------------hhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChH
Q 002772 374 IKMEEVAGLWPNAT---TM------------SSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIE 438 (882)
Q Consensus 374 ~~m~~~~g~~p~~~---t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 438 (882)
++... ..|+.. .+ ......+.+.|++++|...+..+++.. +.+...+..|...|...|+++
T Consensus 327 ~~Al~---~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 327 EKALA---LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHH---hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 99833 233321 11 112335678899999999999999875 455677888999999999999
Q ss_pred HHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhc
Q 002772 439 ISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCG 515 (882)
Q Consensus 439 ~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~ 515 (882)
+|.+.|+++.. | +...+..+...|. .++.++|+..++.+...... .. ......+. ...+..+...+.
T Consensus 403 eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~----~~---~~~~~~l~--~~~~~~~a~~~~ 472 (1157)
T PRK11447 403 AAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR----SI---DDIERSLQ--NDRLAQQAEALE 472 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH----HH---HHHHHHhh--hhHHHHHHHHHH
Confidence 99999999873 3 3445666666664 46789999988876541000 00 00000011 113444556677
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
..|+.++|.+.+..+++... .+..++..+...|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999999998653 356778889999999999999999999875 33 555566666667789999999999
Q ss_pred HHHHHHcCCCCCcccCChh---------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHH
Q 002772 593 LKNMVAEGSRGGEVKPNEV---------TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE 663 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~ 663 (882)
++++.... ..++.. .+..+...+...|+.++|.++++. .+++...+..+.+.+.+.|+++
T Consensus 552 l~~l~~~~-----~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 552 LNTLPRAQ-----WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHhCCchh-----cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHH
Confidence 98865432 222221 233456778899999999999872 2445667788999999999999
Q ss_pred HHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 664 DAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 664 eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+|++.+++. ...|++..+|..++..+...|+.+.|+..++++++..|+++..+..++.+|...|++++|.++++++...
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999876 4678888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 002772 743 G 743 (882)
Q Consensus 743 g 743 (882)
.
T Consensus 701 ~ 701 (1157)
T PRK11447 701 A 701 (1157)
T ss_pred C
Confidence 4
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-21 Score=227.55 Aligned_cols=639 Identities=10% Similarity=-0.007 Sum_probs=452.3
Q ss_pred hHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHH
Q 002772 44 SWIESLRSE--ARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVN 121 (882)
Q Consensus 44 ~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 121 (882)
++.-++.+. ...|++++|+..|+...+..+. +...+..|...+...|+.++|....+..++.. |.|...+..|..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 333344443 3459999999999999885433 35678888999999999999999999998876 466666666533
Q ss_pred HHHhcCCCHHHHHHHHhccCC--C-CceeHHHHHHH--------HHhcCCchHHHHHHHHHHHCCCCCChhhHHHH-HHH
Q 002772 122 MYGKCGSDMWDVYKVFDRITE--K-DQVSWNSMIAT--------LCRFGKWDLALEAFRMMLYSNVEPSSFTLVSV-ALA 189 (882)
Q Consensus 122 ~y~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~ 189 (882)
. + +.+.|..+++++.. | +...+..+... |.+.+ +|.+.++ .......|+..+.... .+.
T Consensus 121 i----~-~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I----P-VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h----c-cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHH
Confidence 2 6 88899999998763 4 33444444444 66664 4555444 4433445555555555 788
Q ss_pred hccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHh-cCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHH
Q 002772 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAK-LGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAV 268 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 268 (882)
+... ++++.+..++..+.+.++.+......|-.+|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|.
T Consensus 192 Y~~l---~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 192 AIYL---KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHH---hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888 999999999999999997777778888888888 477 99999988655568889999999999999999999
Q ss_pred HHHHHHHHCCCC-CChhhHhhHHHHhccCCChhH-HHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC
Q 002772 269 MFLRQMALRGIK-PDGVSIASVLPACSHLEMLDT-GKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 269 ~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
++++++...-.. |+..++.-++. +.+.... +..-+.. +. -+.-....-.++..+.+.+.++.|.++.+.-+
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--QF--ADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhh--hh--HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 999998765333 55555544433 3333221 1111111 11 01122344556888999999998887754222
Q ss_pred CCCceehHHHHH-H-HhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHh-C-CCCchH
Q 002772 347 DKKIALWNAMIT-G-YGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKL-G-LGRDRY 422 (882)
Q Consensus 347 ~~~~~~~~~li~-~-~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~ 422 (882)
.+.. ..+. + ....+...++...++.|.+... -+....--+--...+.|+.++|.+++...... + -..+..
T Consensus 341 -~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 341 -ANEM---LEERYAVSVATRNKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred -cchH---HHHHHhhccccCchhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 2221 1222 2 2234667777777777733211 12222222333345678888888888887762 1 223455
Q ss_pred HHHHHHHHHHhcCC---hHHHHHH-------------------------HhhCC---CC--CeeeHHHHHHHHHhcCCHH
Q 002772 423 VQNALMDMYSRMGR---IEISKTI-------------------------FDDME---VR--DTVSWNTMITGYTICGQHG 469 (882)
Q Consensus 423 ~~~~Li~~y~~~g~---~~~A~~~-------------------------~~~m~---~~--~~~~~~~li~~~~~~g~~~ 469 (882)
..+-|+..|.+.+. ..++..+ +.... .+ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 66678888888776 2333222 11111 11 34456777777766 8888
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 002772 470 DALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMY 549 (882)
Q Consensus 470 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 549 (882)
+|+..|.+... ..|+......+..++...|++++|...+..+... +|+...+..+...+
T Consensus 494 eAi~a~~~Al~-------------------~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 494 VALYAWLQAEQ-------------------RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHH-------------------hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 99998888875 3466555444455556899999999999987554 33444566778888
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHH---HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCH
Q 002772 550 AKCGCLNFARRVFDLMPVRNVITWN---VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMV 626 (882)
Q Consensus 550 ~k~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~ 626 (882)
.+.|++++|...|++....+...++ .+.......|++++|+..|++.++ ..|+...+..+..++.+.|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-------l~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-------IAPSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999887733222222 233334455999999999999998 458888889999999999999
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHH
Q 002772 627 SEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704 (882)
Q Consensus 627 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~ 704 (882)
++|...|++.... .| +...+..+...+...|++++|++.+++. ...|+...+|..+..++...|+.+.|+..+++
T Consensus 626 deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 626 PAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999863 45 4778888889999999999999999875 56788888999999999999999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 705 LFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 705 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+++++|++..+....+++.....+++.|.+-+++.-.-+
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999988777554433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-19 Score=213.16 Aligned_cols=587 Identities=9% Similarity=-0.036 Sum_probs=399.4
Q ss_pred hcCCCHHHHHHHHhccCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHH
Q 002772 125 KCGSDMWDVYKVFDRITE--K-DQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRL 201 (882)
Q Consensus 125 ~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~ 201 (882)
..| +.++|...|+...+ | +..++..|...|.+.|+.++|+..+++..+. .|+...|..++... +....
T Consensus 56 ~~G-d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i------~~~~k 126 (987)
T PRK09782 56 KNN-DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI------PVEVK 126 (987)
T ss_pred hCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh------ccChh
Confidence 347 99999999988664 4 5667899999999999999999999999875 56666666655333 55667
Q ss_pred HHHHHHhhhhcCCCchhHHHHHHHH--------HHhcCChhHHHHHHhcCCCCC--cccHHH-HHHHHHcCCChHHHHHH
Q 002772 202 GRQVHGNSLRVGEWNTFIMNALMAM--------YAKLGRVDDAKTLFKSFEDRD--LVSWNT-IVSSLSQNDKFLEAVMF 270 (882)
Q Consensus 202 ~~~~~~~~~~~g~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~l 270 (882)
+..++..+++..+.+..++..+... |.+.+....+++ .....++ ...... +...|.+.|++++|+++
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 7789999998887777777777776 888877777777 3333343 333344 48899999999999999
Q ss_pred HHHHHHCCCCCChhhHhhHHHHhcc-CCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC-
Q 002772 271 LRQMALRGIKPDGVSIASVLPACSH-LEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK- 348 (882)
Q Consensus 271 ~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~- 348 (882)
+.++.+.+... ..-...+-.++.. .++ +.+..++.. . +..+..+...+.+.|.+.|+.++|.+++++++..
T Consensus 205 L~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~-lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 205 YNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----G-IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----h-cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99999986433 3334445556666 355 666666432 2 5578899999999999999999999999998753
Q ss_pred ----CceehHHHHHHHhcC-----CChHH---------HHHHHHHHH---------HHcCCCCCcchHhhHHhHhhcCCC
Q 002772 349 ----KIALWNAMITGYGQN-----EYDEE---------ALMLFIKME---------EVAGLWPNATTMSSVVPACVRSEA 401 (882)
Q Consensus 349 ----~~~~~~~li~~~~~~-----g~~~~---------A~~l~~~m~---------~~~g~~p~~~t~~~ll~~~~~~~~ 401 (882)
+..+|--++.-+... ..+.+ .+++.+... +-....|.......-..+....+.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 333444444332222 00000 000111110 001223333321111111112244
Q ss_pred CcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-C-Ce----eeHHHHHHHHHhcCC---HHHHH
Q 002772 402 FPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV-R-DT----VSWNTMITGYTICGQ---HGDAL 472 (882)
Q Consensus 402 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~-~~----~~~~~li~~~~~~g~---~~~A~ 472 (882)
..++.+.+..+.+.. +-+....--+.-...+.|+.++|.++|+.... + +. ..-+-++..|...+. ..+++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 555555555555432 22333333444456788999999999998764 2 22 234467778887776 44454
Q ss_pred HHHHHHhhhhhh------hhccccccccccccCCCCC---cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHH
Q 002772 473 MLLREMQNMEEE------KNRNNVYDLDETVLRPKPN---SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGS 543 (882)
Q Consensus 473 ~~~~~m~~~~~~------~~~~~~~~~~~~~~~~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 543 (882)
.+-..+-..+.. ..............+..|+ ...+..+...+.. +..++|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 442211110000 0000000111111133343 3344444444444 78888999777777654 4444444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAAC 620 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~ 620 (882)
.+...+.+.|++++|...|+++. .|+...+..+...+.+.|+.++|.+.|++.++.+ |+.. .+..+...+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l 586 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHH
Confidence 45555678999999999999876 4556667788888999999999999999999854 5543 333444455
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
...|++++|...+++..+ +.|+...|..+..++.+.|+.++|.+.+++. ...|+...++..+..++...|+.+.|.
T Consensus 587 ~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 567999999999999985 4678889999999999999999999999876 568888889999999999999999999
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 700 IAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 700 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-20 Score=189.64 Aligned_cols=444 Identities=13% Similarity=0.070 Sum_probs=352.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhh
Q 002772 251 WNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYC 330 (882)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~ 330 (882)
-..|..-..+.|++.+|.+.-...-... .-+..+...+=..+.+..+++...+--...++. .+.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHH
Confidence 3445555667788888877654332221 112222222223344444555544443344443 2556678888889999
Q ss_pred cCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhH-hhcCCCCcchh
Q 002772 331 NCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPA-CVRSEAFPDKE 406 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~ 406 (882)
..|++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+. ..+.|+.+...+-+.- .-..|.+++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~a---lqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEA---LQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHH---HhcCcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999888764 3568999999999999999999999888 4577877665443333 33468899999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 002772 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD---TVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 407 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 483 (882)
.-+-++++.. +--..+|+-|...+-..|++..|...|++...-| ...|-.|-..|...+.+++|+..+.+...
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--- 280 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--- 280 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---
Confidence 8888887754 2334678888899999999999999999987443 34677888899999999999999999875
Q ss_pred hhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002772 484 EKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVF 562 (882)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 562 (882)
..|+ .+.+..+-..|...|.++.|...+++.+..... =+..|+.|..++-..|++.+|...+
T Consensus 281 ----------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 281 ----------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred ----------------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 4565 456777777888999999999999998875422 3568999999999999999999999
Q ss_pred hhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002772 563 DLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 563 ~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
.+.. .| ...+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++..
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal- 415 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE-------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL- 415 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-
Confidence 9876 33 467889999999999999999999999998 6688 5689999999999999999999999987
Q ss_pred hcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 639 DYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 639 ~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
.|+|+ .+.|+.|...|-..|+.++|.+.+.+. .+.|.-.++.+.|...++-.||+.+|...++.+++++||.+.+|
T Consensus 416 --rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 416 --RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred --hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 57888 778999999999999999999988765 68888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchH
Q 002772 717 VLLSNIYSSAQLWDK 731 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~ 731 (882)
-.|.-.+.--..|.+
T Consensus 494 cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHhcccc
Confidence 988887777777776
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-19 Score=181.79 Aligned_cols=413 Identities=14% Similarity=0.122 Sum_probs=328.2
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHH
Q 002772 293 CSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEA 369 (882)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A 369 (882)
.-+.|++++|++.-..+-... +.+....-.+-..|....+.+....--..-.+. ...+|..+.+.+-..|+.++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHH
Confidence 345678888877655544333 333333334445566666666544332222222 234799999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-cchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHH-HHHHHHHHHhcCChHHHHHHHhhC
Q 002772 370 LMLFIKMEEVAGLWPN-ATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYV-QNALMDMYSRMGRIEISKTIFDDM 447 (882)
Q Consensus 370 ~~l~~~m~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~~~~m 447 (882)
+.+|+.| -.++|+ ...|..+..++...|+.+.|.+.+.+.++. .|+... -+-+.......|++++|...+.+.
T Consensus 136 l~~y~~a---iel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 136 LALYRAA---IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHH---HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999999 345664 457888888999999999999999998875 354433 334555666789999999988776
Q ss_pred C--CC-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc-chHhhHHHhhcCcchHHHH
Q 002772 448 E--VR-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS-ITLMTVLPGCGALSALAKG 523 (882)
Q Consensus 448 ~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a 523 (882)
. +| =.+.|+.|...+-.+|+...|++.|++.++ +.|+- -.|..+-..+...+.++.|
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-------------------ldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-------------------LDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-------------------CCCcchHHHhhHHHHHHHHhcchHH
Confidence 5 34 367899999999999999999999999975 66763 3556666666666666777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 524 KEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 524 ~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
...+..+.... +....++..|.-.|...|.++-|...+++.. +|+ ...|+.|..++-..|+..+|.+.|++.+.
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-- 348 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-- 348 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--
Confidence 66666655433 2245677778888999999999999999876 454 68999999999999999999999999998
Q ss_pred CCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCC
Q 002772 601 SRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFD 677 (882)
Q Consensus 601 ~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~ 677 (882)
..|+ ..+.+.|...+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++. .++|.
T Consensus 349 -----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 349 -----LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred -----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 4577 46889999999999999999999999874 4565 567899999999999999999999875 78999
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 678 KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 678 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
-.++++.+...|...|+++.|...+.+++.++|..+.++..|+.+|-.+|+..+|..-++...+.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 98899999999999999999999999999999999999999999999999999999988876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-15 Score=165.24 Aligned_cols=598 Identities=13% Similarity=0.103 Sum_probs=384.3
Q ss_pred chhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccC--C----CCceeHHHHHHHHHhcCCchHHHH
Q 002772 93 LSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRIT--E----KDQVSWNSMIATLCRFGKWDLALE 166 (882)
Q Consensus 93 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~ 166 (882)
++.|.+-|..+.+..+. .-+.....---+|.+ + ++-.|..+|.... . +|+.. .+--.+.+.|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynk-k-dY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNK-K-DYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhcc-c-cHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 57788888888877643 222222222222333 5 8999999998732 2 33321 11134457899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhc-cCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC
Q 002772 167 AFRMMLYSNVEPSSFTLVSVALACS-NLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245 (882)
Q Consensus 167 ~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 245 (882)
.|.+.++- .|+.+.-...|.... ..........|.++....-+....++.+.|.|.+.|.-.|+++.+..+...+..
T Consensus 221 a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 99998864 443322222221111 111114556677777766666688999999999999999999999999877654
Q ss_pred CC------cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhh--HhhHHHHhccCCChhHHHHHHHHHHHhCCCCC
Q 002772 246 RD------LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVS--IASVLPACSHLEMLDTGKEIHAYALRNDILID 317 (882)
Q Consensus 246 ~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 317 (882)
.. ..+|-.+-++|-..|++++|...|.+-.+ ..||.++ +.-+-..+...|+++.+...|+.+.+.. +.
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~ 374 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PN 374 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cc
Confidence 32 23577788999999999999999976655 4555544 4456677888999999999999999984 77
Q ss_pred chhHHHHHHHHhhcCC----ChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHH---HHcCCCCCcc
Q 002772 318 NSFVGSALVDMYCNCR----EVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKME---EVAGLWPNAT 387 (882)
Q Consensus 318 ~~~~~~~Li~~y~~~g----~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~~g~~p~~~ 387 (882)
+..+...|...|+..+ ..+.|..+......+ |..+|-.+...+-+..-+. ++..|.... ...+..+...
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHH
Confidence 8888888888888775 456666666666554 4446666666655544433 366655441 2344446666
Q ss_pred hHhhHHhHhhcCCCCcchhhHHHHHHHh---CCCCchH------HHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHH
Q 002772 388 TMSSVVPACVRSEAFPDKEGIHGHAIKL---GLGRDRY------VQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTM 458 (882)
Q Consensus 388 t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~------~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 458 (882)
..+.+.......|+++.|...+...... -..+|.. +--.|...+-..++.+.|.+.|..+....+. .
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----Y 529 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----Y 529 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----h
Confidence 7777777778888888888888877654 1222321 1222455566677888888888877643222 3
Q ss_pred HHHHHhc-------CCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHH
Q 002772 459 ITGYTIC-------GQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAI 531 (882)
Q Consensus 459 i~~~~~~-------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 531 (882)
|.+|.+. +...+|...+.+... ....|....+.+..-+-....+..|..-+..+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~------------------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALN------------------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHh------------------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHH
Confidence 3333333 566778888887776 334444444444445555555556666555444
Q ss_pred HhcC-CCchhHHHHHHHHHHh------------cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHH
Q 002772 532 RNML-ATDVVVGSALVDMYAK------------CGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKN 595 (882)
Q Consensus 532 ~~g~-~~~~~~~~~li~~y~k------------~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 595 (882)
+.-. .+|.++.-+|.+.|.. .+..+.|.++|.++. +.|...-|.+...++..|++.+|..+|.+
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 4222 2566666667665543 245677888887665 45677777777788888888888888888
Q ss_pred HHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CC
Q 002772 596 MVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PP 674 (882)
Q Consensus 596 m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~ 674 (882)
..+.. .-+..+|..+...|...|++..|+++|+...+++.-.-+..+..+|..++-++|.+.+|.+..... ..
T Consensus 672 VrEa~------~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 672 VREAT------SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHH------hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88765 334567788888888888888888888888887776667888888888888888888887765543 34
Q ss_pred CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 002772 675 EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVR 745 (882)
Q Consensus 675 ~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 745 (882)
.|.+..+--.++-. ..+..+.++..++ ..+-.+....+..++|.++|..|...+-+
T Consensus 746 ~p~~~~v~FN~a~v---------~kkla~s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 746 APSNTSVKFNLALV---------LKKLAESILRLEK------RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred CCccchHHhHHHHH---------HHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45554222122111 1222333334443 12223344445567788888887776544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-16 Score=183.61 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=163.1
Q ss_pred hhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHH
Q 002772 513 GCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEV 589 (882)
Q Consensus 513 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 589 (882)
.+...|++++|...+..+++.. +.....|..+...|...|++++|...|++.. +.+...|..+...|...|++++|
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444444332 1134466677778888888888888888765 34577888888888899999999
Q ss_pred HHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHH
Q 002772 590 LELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQL 668 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~ 668 (882)
+..|++.++.. |+ ...+..+...+.+.|++++|+..|+...+. .+.+...|..+..++...|++++|.+.
T Consensus 419 ~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 419 GKDYQKSIDLD-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHcC-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 99999998844 55 456667777888889999999999988763 333577888889999999999999998
Q ss_pred HHhC-CCCCCchhhH-------HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 669 INMM-PPEFDKAGAW-------SSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 669 ~~~m-~~~p~~~~~~-------~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
+++. ...|+....| +..+..+...|+++.|+..++++++++|++...+..|+.+|...|++++|.+.+++..
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8874 3444322122 1122223446899999999999999999999999999999999999999999998875
Q ss_pred hC
Q 002772 741 EM 742 (882)
Q Consensus 741 ~~ 742 (882)
+.
T Consensus 570 ~l 571 (615)
T TIGR00990 570 EL 571 (615)
T ss_pred HH
Confidence 54
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-17 Score=179.81 Aligned_cols=199 Identities=10% Similarity=0.081 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hh
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPV--RN------VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EV 611 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~ 611 (882)
+++.++.+|.+.|++++|.+.|+.+.. |+ ...|..+...+.+.|++++|++.|+++.+.. |+ ..
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~ 215 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------PQCVR 215 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------cCCHH
Confidence 344444455555555555555544431 11 1123445555566666666666666666532 33 33
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
.+..+...+.+.|++++|.++|+++.+. +-......+..++.+|.+.|++++|.+.++++ ...|+.. .+..++..+.
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~ 293 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHH
Confidence 4555556666666666666666666543 11111344566666666667777776666654 2345555 5566777777
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCc
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS---AQLWDKAMDVRKKMKEMGVRKEPG 749 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~~ 749 (882)
..|+.+.|...++++++..|++... ..+...+.. .|+.+++..++++|.++++++.|.
T Consensus 294 ~~g~~~~A~~~l~~~l~~~P~~~~~-~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 294 EQEGPEAAQALLREQLRRHPSLRGF-HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCHHHHHHHHHHHHHhCcCHHHH-HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7788888888888888888876643 333444332 458899999999999999999986
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=180.32 Aligned_cols=305 Identities=14% Similarity=0.096 Sum_probs=204.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCC-hhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCc---hhHHHHHHHHhh
Q 002772 255 VSSLSQNDKFLEAVMFLRQMALRGIKPD-GVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDN---SFVGSALVDMYC 330 (882)
Q Consensus 255 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~~Li~~y~ 330 (882)
...+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+ ..++ ..++..|...|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Confidence 44556788999999999999886 343 4467777778888888888888888887754 2221 245677777888
Q ss_pred cCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhh
Q 002772 331 NCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEG 407 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 407 (882)
+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+ ...+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~------------------- 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDSLRVE------------------- 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCcchHH-------------------
Confidence 88888888888877765 24456777777788888888888887777 32221111000
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Q 002772 408 IHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484 (882)
Q Consensus 408 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (882)
....+..+...|.+.|++++|...|+++.+ | +...+..+...|.+.|++++|.+.|+++.. .
T Consensus 179 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~ 243 (389)
T PRK11788 179 ------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEE---Q 243 (389)
T ss_pred ------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---H
Confidence 011234455566667777777777776542 2 234556666777777777777777777765 1
Q ss_pred hhccccccccccccCCCCC--cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002772 485 KNRNNVYDLDETVLRPKPN--SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVF 562 (882)
Q Consensus 485 ~~~~~~~~~~~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 562 (882)
.|+ ..++..+..++...|++++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|
T Consensus 244 ----------------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 244 ----------------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred ----------------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 222 2345556666666666666666666666543 44455577888888888888888888
Q ss_pred hhCC--CCChhhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCH
Q 002772 563 DLMP--VRNVITWNVIIMAYGM---HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMV 626 (882)
Q Consensus 563 ~~m~--~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~ 626 (882)
+++. .|+..+++.++..+.. +|+.++++.+|++|.+.+ ++|+.. ..|++.|..
T Consensus 306 ~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 306 REQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-----LKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-----HhCCCC------EECCCCCCC
Confidence 8765 5777788877776654 557888888888888877 667665 346666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-16 Score=183.36 Aligned_cols=398 Identities=9% Similarity=-0.017 Sum_probs=208.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCCh
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREV 335 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~ 335 (882)
......|+.++|++++.+..... ..+...+..+..++...|++++|.++++.+++.. |.+......+...+...|+.
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 34445566666666666655411 1222235555555555555555555555555542 33444444454555555555
Q ss_pred HHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHH
Q 002772 336 ECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHA 412 (882)
Q Consensus 336 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 412 (882)
++|...+++.... +.. |..+...+...|+.++|+..+++ +
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~------------------------------------a 142 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ------------------------------------A 142 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH------------------------------------H
Confidence 5555554444321 222 44444444444555555554444 4
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCee--------eHHHHHHHH-----HhcCCH---HHHHHHHH
Q 002772 413 IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTV--------SWNTMITGY-----TICGQH---GDALMLLR 476 (882)
Q Consensus 413 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~~~~ 476 (882)
++.. +.+..++..+...+.+.|..++|.+.++.... +.. ....++..+ ...+++ ++|++.++
T Consensus 143 l~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 143 LPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 4432 22333444455666666777777777766553 110 111112111 122233 77888888
Q ss_pred HHhhhhhhhhccccccccccccCCCCCcc-hHhh----HHHhhcCcchHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHH
Q 002772 477 EMQNMEEEKNRNNVYDLDETVLRPKPNSI-TLMT----VLPGCGALSALAKGKEIHAYAIRNMLA-TDVVVGSALVDMYA 550 (882)
Q Consensus 477 ~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~ 550 (882)
.+.+.. ...|+.. .+.. .+.++...++.++|...+..+.+.+.. |+- ....+...|.
T Consensus 221 ~ll~~~----------------~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 221 ALEALW----------------HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred HHHhhc----------------ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 887510 1122211 1100 022223345555555555555544321 111 1111344455
Q ss_pred hcCCHHHHHHHHhhCC--CCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc
Q 002772 551 KCGCLNFARRVFDLMP--VRN-----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS 623 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~--~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~ 623 (882)
..|++++|+..|+++. .|. ...+..+..++...|++++|+++++++.... |.......
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-------P~~~~~~~-------- 348 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-------PPFLRLYG-------- 348 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-------CceEeecC--------
Confidence 5555555555555443 111 1123333444455555555555555554421 21110000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 624 GMVSEGMDLFYKMKDDYGIEPS---PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 624 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
. ..-.|+ ...+..+..++...|++++|++.++++ ...|+...+|..++..+...|+.+.|+
T Consensus 349 -----------~----~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 349 -----------S----PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred -----------C----CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 0 001223 234456677777888888888888775 346777768888888888888888888
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 700 IAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 700 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888877664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-14 Score=153.14 Aligned_cols=643 Identities=12% Similarity=0.034 Sum_probs=412.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCCc--cHHHHHHHHh-cCC------C-----chhHHHHHH
Q 002772 40 RCKESWIESLRSEARSNQFREAILSYIEMTRSD----IQPDNF--AFPAVLKAVA-GIQ------D-----LSLGKQIHA 101 (882)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~--~~~~ll~~~~-~~~------~-----~~~a~~~~~ 101 (882)
.-...|......|...|..++.+.+++.-.... -.++.. .-...+.+|- ..+ + ...+..+|.
T Consensus 39 a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~ 118 (1018)
T KOG2002|consen 39 APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFD 118 (1018)
T ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 344579999999999999999999988765211 011111 1111122221 111 0 111122222
Q ss_pred HHHHhcCCCCChhH-HhHHHHHHHhcC-CCHHHHHHHHhccCC--CCceeHHHHHHHH--HhcCCchHHHHHHHHHHHC-
Q 002772 102 HVVKYGYGLSSVTV-ANTLVNMYGKCG-SDMWDVYKVFDRITE--KDQVSWNSMIATL--CRFGKWDLALEAFRMMLYS- 174 (882)
Q Consensus 102 ~~~~~~~~~~~~~~-~~~li~~y~~~g-~~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~- 174 (882)
..-+.... .++.. +.... |...| .++++|...|..... |+-+. -.+..++ ...+++..|+.+|......
T Consensus 119 ~A~ki~m~-~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~in 194 (1018)
T KOG2002|consen 119 LADKIDMY-EDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRIN 194 (1018)
T ss_pred HHHHhhcc-Ccchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcC
Confidence 22111111 11111 11111 11222 136888888887654 33221 1233333 3568999999999996653
Q ss_pred -CCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcC---ChhHHHHHHhcCC---CCC
Q 002772 175 -NVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLG---RVDDAKTLFKSFE---DRD 247 (882)
Q Consensus 175 -g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~~ 247 (882)
...||...- +=..+... +..+.|...+..+++..+.++..+-.|--+-.... .+..+..++...- ..|
T Consensus 195 p~~~aD~rIg--ig~Cf~kl---~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 195 PACKADVRIG--IGHCFWKL---GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred cccCCCccch--hhhHHHhc---cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 344554321 11122344 66777777787777776544444444433333333 3445555554432 357
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 002772 248 LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIK--PDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSAL 325 (882)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~L 325 (882)
.+..|.|-+.|.-.|++..++.+...+...-.. .-...|-.+-+++-..|+++.|...|....+.. -...+..+--|
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVGL 348 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccch
Confidence 888999999999999999999999998775311 112347778888889999999999999988865 22224556678
Q ss_pred HHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhc
Q 002772 326 VDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNE----YDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR 398 (882)
Q Consensus 326 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~ 398 (882)
..+|.+.|+++.|...|+.+... +..+...+-..|...+ ..++|..++.+..+. .+-|...|..+-..+ .
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~-e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLL-E 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHH-H
Confidence 89999999999999999988654 2334555555666554 346677776666221 123334444444333 3
Q ss_pred CCCCcchhhHHHHH----HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC-------Cee------eHHHHHHH
Q 002772 399 SEAFPDKEGIHGHA----IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR-------DTV------SWNTMITG 461 (882)
Q Consensus 399 ~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-------~~~------~~~~li~~ 461 (882)
.++......++..+ ...+-.+.+.+.|.+...+...|++++|...|++.... |.. +--.+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 34444445555443 35566688889999999999999999999999876522 221 12224455
Q ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHH-hhcCcchHHHHHHHHHHHHHhcCCCchh
Q 002772 462 YTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLP-GCGALSALAKGKEIHAYAIRNMLATDVV 540 (882)
Q Consensus 462 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 540 (882)
+-..++++.|.+.|..+.+ ..|+.++-..-+- ..-..+.+.+|...+..+.... ..++.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk-------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK-------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH-------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 6667789999999999986 3466554333222 2223466777888777776643 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHc------------cCChhHHHHHHHHHHHcCCCC
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVIIMAYGM------------HGEGQEVLELLKNMVAEGSRG 603 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~~ 603 (882)
+++.+.+.|.+...+.-|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.+...
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--- 642 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--- 642 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC---
Confidence 77778888998888888888555443 3455555555554432 245788999999998864
Q ss_pred CcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC---CCCCCchh
Q 002772 604 GEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM---PPEFDKAG 680 (882)
Q Consensus 604 ~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m---~~~p~~~~ 680 (882)
+-|...-+.+.-.++..|.+.+|..+|.+..+. ..-...+|-.+..+|..+|++-.|+++|+.. -.+.++..
T Consensus 643 ---pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 643 ---PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred ---cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 446677788888889999999999999999874 3345667888889999999999999998854 23444555
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
+..-|..++...|.+.++...+..+..+.|.++.....++-+.
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 8888999999999999999999999999999887655554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=176.44 Aligned_cols=350 Identities=10% Similarity=-0.003 Sum_probs=268.2
Q ss_pred cCCChHHHHHHHhccCCC------CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCc-chHhhHHhHhhcCCCCc
Q 002772 331 NCREVECGRRVFDFISDK------KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNA-TTMSSVVPACVRSEAFP 403 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~~~~ 403 (882)
+..+++.-.-.|..-+++ +..-.-.++..+.+.|+.++|+.++..... ..|+. ..+..++.++...|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHH
Confidence 445555555555555432 222345567778889999999999988822 23333 23444445666789999
Q ss_pred chhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 404 DKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
.|.+.++.+++.. +.+...+..+...|.+.|++++|...|++... | +...|..+...+...|++++|...++++..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999988765 45566788888999999999999999998763 3 456788888999999999999999998865
Q ss_pred hhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002772 481 MEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARR 560 (882)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 560 (882)
..|+.......+..+...|++++|...+..+.+....++......+...|.+.|++++|..
T Consensus 173 -------------------~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 173 -------------------EVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred -------------------hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 2344433333334467789999999999888776544444555666788899999999999
Q ss_pred HHhhCC---CCChhhHHHHHHHHHccCChhH----HHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHH
Q 002772 561 VFDLMP---VRNVITWNVIIMAYGMHGEGQE----VLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDL 632 (882)
Q Consensus 561 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 632 (882)
.|++.. +.+...+..+...|...|++++ |+..|++.++. .|+ ...+..+...+...|++++|...
T Consensus 234 ~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-------~P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 234 TGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-------NSDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999876 4457788889999999999986 89999999984 465 55788888999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 002772 633 FYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 633 ~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
+++..+. .|+ ...+..+..+|.+.|++++|.+.++++. ..|+....+..+..++...|+.+.|...++++++..|
T Consensus 307 l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 307 LQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9998864 444 5677788999999999999999998763 5677762344456778999999999999999999999
Q ss_pred CCC
Q 002772 711 DVA 713 (882)
Q Consensus 711 ~~~ 713 (882)
++.
T Consensus 384 ~~~ 386 (656)
T PRK15174 384 SHL 386 (656)
T ss_pred hhc
Confidence 864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=168.73 Aligned_cols=445 Identities=11% Similarity=0.006 Sum_probs=257.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCC--CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-hhhHhhHHHHhccC
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFE--DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPD-GVSIASVLPACSHL 296 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 296 (882)
+..+...|.+.|+++.|++.|+... .|+...|..+..+|.+.|++++|++.+....+. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 3455566778888888888887754 356667777778888888888888888887764 343 33566666777777
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHH
Q 002772 297 EMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKM 376 (882)
Q Consensus 297 ~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 376 (882)
|++++|..-+..+...+ -..+......+...+ +......+...++.-+ .+..++..+.. |........+..-+..-
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRNEQSAQAVERLL-KKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH-HHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 88877777666555443 111111111111111 1111223333332221 12223332222 21111111111111110
Q ss_pred HHHcCCCCCcc-hHhhHHh---HhhcCCCCcchhhHHHHHHHhC-CCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 002772 377 EEVAGLWPNAT-TMSSVVP---ACVRSEAFPDKEGIHGHAIKLG-LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRD 451 (882)
Q Consensus 377 ~~~~g~~p~~~-t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~ 451 (882)
....|+.. .+..+.. -....+++++|.+.+..+++.+ ..|+ +
T Consensus 284 ---~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------~ 330 (615)
T TIGR00990 284 ---NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------E 330 (615)
T ss_pred ---cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh------------------------------h
Confidence 01111100 0000000 0011233444444444444332 1111 1
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHH
Q 002772 452 TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYA 530 (882)
Q Consensus 452 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~ 530 (882)
...|+.+...+...|++++|+..|++.++ ..|+ ...+..+...+...|++++|...+..+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~-------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIE-------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22344444445555555555555555543 2233 223444444445555555555555555
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 002772 531 IRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK 607 (882)
Q Consensus 531 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 607 (882)
++.. +.+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++. .
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~ 463 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-------F 463 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------C
Confidence 4442 2346677788888999999999999998876 345677888888899999999999999999874 3
Q ss_pred CC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHhhccCCHHHHHHHHHhC-CCCCC
Q 002772 608 PN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-D-------HYACVVDLLGRAGKVEDAYQLINMM-PPEFD 677 (882)
Q Consensus 608 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~ 677 (882)
|+ ...+..+...+...|++++|++.|+...+. .|+. . .++.....+...|++++|.+++++. ...|+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 55 567788888889999999999999998753 3321 1 1122223344569999999999874 56777
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 678 KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 678 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
...+|..++..+...|+.+.|...+++++++.+.....+. ...|.+|.++....++
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~--------a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ--------AISYAEATRTQIQVQE 596 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 7767999999999999999999999999999886444222 2234566666555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=173.80 Aligned_cols=325 Identities=10% Similarity=-0.042 Sum_probs=266.2
Q ss_pred chHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC--CC-CeeeHHHHHHHHH
Q 002772 387 TTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME--VR-DTVSWNTMITGYT 463 (882)
Q Consensus 387 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~ 463 (882)
.-...++..+.+.|+++.|..++...+........ ....++......|++++|...|+.+. .| +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34556777888999999999999999887644444 44445566777999999999999987 33 5567888889999
Q ss_pred hcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHH
Q 002772 464 ICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVG 542 (882)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 542 (882)
+.|++++|++.|++... +.|+ ...+..+...+...|+.++|...+..+......+.. .+
T Consensus 122 ~~g~~~~Ai~~l~~Al~-------------------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~ 181 (656)
T PRK15174 122 KSKQYATVADLAEQAWL-------------------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MI 181 (656)
T ss_pred HcCCHHHHHHHHHHHHH-------------------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HH
Confidence 99999999999999986 4455 456677788899999999999999988776543333 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHH
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMPV----RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALF 617 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll 617 (882)
..+ ..+.+.|++++|...++.+.. ++...+..+...+...|++++|++.|+++++.. |+ ...+..+.
T Consensus 182 ~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~Lg 253 (656)
T PRK15174 182 ATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-------LDGAALRRSLG 253 (656)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHH
Confidence 333 347889999999999998763 233444556678889999999999999999854 54 56777788
Q ss_pred HHHhccCCHHH----HHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHh
Q 002772 618 AACSHSGMVSE----GMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 618 ~a~~~~g~~~~----a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~ 691 (882)
..+...|++++ |...|++..+. .| +...+..+..+|.+.|++++|...+++. ...|+...++..+..++..
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88999999986 89999999863 45 5778999999999999999999999876 4678887789999999999
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.|+.+.|...++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988877788999999999999999999876553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-13 Score=137.47 Aligned_cols=327 Identities=17% Similarity=0.224 Sum_probs=211.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHh--cCCCchhH-HHHHHHHHHhcCCCCChhHHhHHHHHHH
Q 002772 48 SLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVA--GIQDLSLG-KQIHAHVVKYGYGLSSVTVANTLVNMYG 124 (882)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~y~ 124 (882)
-+.-.+.+|...++.-+|++|.+.|+..+...-..|++.-+ ...++.-+ .+.|-.|.+.|-. +..+ -
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~s--------W 190 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--STSS--------W 190 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc--cccc--------c
Confidence 34456788999999999999999998888777666655433 23333322 2223333333322 2222 2
Q ss_pred hcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHH
Q 002772 125 KCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQ 204 (882)
Q Consensus 125 ~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 204 (882)
|.| ++.+ ++-+...++..+|.+||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+.+ +..++.
T Consensus 191 K~G-~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-------~~~~K~ 259 (625)
T KOG4422|consen 191 KSG-AVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-------YSVGKK 259 (625)
T ss_pred ccc-cHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-------hhccHH
Confidence 445 4443 44444445667899999999999999999999999999999999999999998844 445577
Q ss_pred HHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHH----hcCC----CCCcccHHHHHHHHHcCCChHH-HHHHHHHH
Q 002772 205 VHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLF----KSFE----DRDLVSWNTIVSSLSQNDKFLE-AVMFLRQM 274 (882)
Q Consensus 205 ~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 274 (882)
+...|+... .||.+++|++++...+.|+++.|++-+ .+|+ +|...+|..+|..+++.++..+ |..+..+.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 888888777 888888888888888888777765533 3333 3566666666666666555533 23333333
Q ss_pred HH----CCCCC----ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC
Q 002772 275 AL----RGIKP----DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 275 ~~----~g~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
+. ..++| |..-|...+..|.+..+.+.|.+++........ |...|.. +
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------~~~ig~~------~---- 395 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------WKFIGPD------Q---- 395 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------hhhcChH------H----
Confidence 32 12222 223355556666666666666665544322110 0000000 0
Q ss_pred CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCch
Q 002772 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDR 421 (882)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 421 (882)
....-|..+....++....+.-+..|..| .-.-+-|+..+...++++....+.++...+++..++..|.....
T Consensus 396 -~~~fYyr~~~~licq~es~~~~~~~Y~~l-VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 396 -HRNFYYRKFFDLICQMESIDVTLKWYEDL-VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 00123555666777777788888888888 55667788888888999888888888888888888877744433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-14 Score=162.64 Aligned_cols=441 Identities=8% Similarity=-0.006 Sum_probs=250.8
Q ss_pred HHHhcCChhHHHHHHhcCCCCCcc---cHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhH---hhHHHHhccCCCh
Q 002772 226 MYAKLGRVDDAKTLFKSFEDRDLV---SWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSI---ASVLPACSHLEML 299 (882)
Q Consensus 226 ~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~~~~ 299 (882)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 466888888999888887753322 23377888888888899988888877 3332222 2224466677888
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhc--CCChHHHHHHHHHHH
Q 002772 300 DTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQ--NEYDEEALMLFIKME 377 (882)
Q Consensus 300 ~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 377 (882)
+.|.++++.+++.. |.+..++..|+..|...++.++|...++++...+......+..+|.. .++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl- 195 (822)
T PRK14574 119 DQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA- 195 (822)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH-
Confidence 88888888888875 56667777777888888888888888887776554433334444444 44454577777777
Q ss_pred HHcCCCCCc-chHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHH
Q 002772 378 EVAGLWPNA-TTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWN 456 (882)
Q Consensus 378 ~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 456 (882)
....|+. ..+.....+..+.|-...|.++..+- |+..+-..... =+.+.|.+..+....++.
T Consensus 196 --l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~---- 258 (822)
T PRK14574 196 --VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPTR---- 258 (822)
T ss_pred --HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhcccccc----
Confidence 2234443 33344555555555555554443331 11111000000 001111111111110000
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-----HhhHHHhhcCcchHHHHHHHHH
Q 002772 457 TMITGYTICG---QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-----LMTVLPGCGALSALAKGKEIHA 528 (882)
Q Consensus 457 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-----~~~ll~a~~~~~~~~~a~~i~~ 528 (882)
...+ -.+.|+.-++.+.. . .+-.|.... ..--+-++...++..++.+.++
T Consensus 259 ------~~~~r~~~~d~ala~~~~l~~---~-------------~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 259 ------SETERFDIADKALADYQNLLT---R-------------WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred ------cchhhHHHHHHHHHHHHHHHh---h-------------ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0011 23455555666554 1 012232222 1233456777788888888888
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 002772 529 YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR---------NVITWNVIIMAYGMHGEGQEVLELLKNMVAE 599 (882)
Q Consensus 529 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 599 (882)
.+...+.+....+--++.++|...+++++|..+|.++... +......|.-+|...+++++|..+++++.+.
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8888777666677788888888888888888888876421 2222456778888888888888888888763
Q ss_pred CC--------CCCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH
Q 002772 600 GS--------RGGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 600 g~--------~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
-. +.....||-. .+..+...+...|++.+|++.++.+.. .-+-|......+.+++...|+..+|++.++
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 20 0000112211 223334445555666666666666653 223345555555555555666666655554
Q ss_pred hC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 671 MM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 671 ~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
.. ...|++..+...++.+....++.+.|+...+.+++..|+++.
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 43 234554444445555555555555565555556666665553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-13 Score=134.19 Aligned_cols=447 Identities=12% Similarity=0.060 Sum_probs=281.7
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHH
Q 002772 145 QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALM 224 (882)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li 224 (882)
+++=|.|+.. ...|.+..+.-+|+.|.+.|+..+...-..++...+......-.-.-.+-|-.+.+.|+.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 4456666654 45788899999999999999988887777777664433111111122233444444553333333
Q ss_pred HHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHH
Q 002772 225 AMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKE 304 (882)
Q Consensus 225 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 304 (882)
|.|++.+ ++-+...+...+|..||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+-+-. .+++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 5566554 4445555577899999999999999999999999999999999999999999986644 3488
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCC
Q 002772 305 IHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWP 384 (882)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 384 (882)
+...|+... ..||..++|+++...++.|+++.|++. |++++.+| +.-|+.|
T Consensus 260 Lv~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~Em-KeiGVeP 310 (625)
T KOG4422|consen 260 LVAEMISQK-MTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEM-KEIGVEP 310 (625)
T ss_pred HHHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHH-HHhCCCc
Confidence 889999888 899999999999999999998887654 45666677 6677777
Q ss_pred CcchHhhHHhHhhcCCCCcc-hhhHHHHHHH----hCCC----CchHHHHHHHHHHHhcCChHHHHHHHhhCCCC-----
Q 002772 385 NATTMSSVVPACVRSEAFPD-KEGIHGHAIK----LGLG----RDRYVQNALMDMYSRMGRIEISKTIFDDMEVR----- 450 (882)
Q Consensus 385 ~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----- 450 (882)
...+|..+|.-+++.++... +..+..++.. ..+. .|...+..-++.+.+..+.+-|.++-.-....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 77777777776666665533 3333333332 1122 23445555666666677766666655443311
Q ss_pred ------CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHH
Q 002772 451 ------DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGK 524 (882)
Q Consensus 451 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~ 524 (882)
...-|..+....++....+.-+..|+.|+. . -+-|+..+...+++|....+.++...
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP---~--------------~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP---S--------------AYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--------------eecCCchhHHHHHHHHhhcCcchhHH
Confidence 122355566777888888888999999987 5 67899999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHcc-CChhHH-HHHHHHHHHcCCC
Q 002772 525 EIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMH-GEGQEV-LELLKNMVAEGSR 602 (882)
Q Consensus 525 ~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A-~~l~~~m~~~g~~ 602 (882)
+++..++..|.........-+...+++.. +.|+...-..+-..+++. -++.++ ...-.+|.+..
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~-- 519 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD-- 519 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--
Confidence 99988888775544333333332222221 022211111111111110 011111 12223444433
Q ss_pred CCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH---HHHHhhccCCHHHHHHHHHhC
Q 002772 603 GGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYAC---VVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 603 ~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---li~~l~r~g~~~eA~~~~~~m 672 (882)
-.....+.++..+.+.|..++|.++|....+++.-.|.....++ +++.-.+....-.|...++-|
T Consensus 520 -----~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 520 -----WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred -----CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33334444555566667777777777766554343444444443 334444555666666666555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-13 Score=161.93 Aligned_cols=370 Identities=12% Similarity=-0.000 Sum_probs=240.2
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHH
Q 002772 216 NTFIMNALMAMYAKLGRVDDAKTLFKSFE---DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPA 292 (882)
Q Consensus 216 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 292 (882)
+...+..+...+.+.|++++|.++|+... ..+...+..+...+...|++++|+..+++..+. .|+...+..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34446677777888888888888888743 234556777778888888888888888888775 3433226666667
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCce--------ehHHHHHHHh---
Q 002772 293 CSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIA--------LWNAMITGYG--- 361 (882)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~--------~~~~li~~~~--- 361 (882)
+...|+.+.|...++.+++.. |.+..+...+...+...|..+.|...++.... +.. ....++....
T Consensus 126 l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc
Confidence 778888888888888888875 66677777788888888888888888887765 211 1222222222
Q ss_pred --cCCCh---HHHHHHHHHHHHHcCCCCCcch-Hhh----HHhHhhcCCCCcchhhHHHHHHHhCCC-CchHHHHHHHHH
Q 002772 362 --QNEYD---EEALMLFIKMEEVAGLWPNATT-MSS----VVPACVRSEAFPDKEGIHGHAIKLGLG-RDRYVQNALMDM 430 (882)
Q Consensus 362 --~~g~~---~~A~~l~~~m~~~~g~~p~~~t-~~~----ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~ 430 (882)
..+++ ++|++.++.+.......|+... +.. .+.++...+++++|+..++.+.+.+-. |+. ....+...
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 22233 6788888888433233443321 111 133445567788888888887776532 221 22224667
Q ss_pred HHhcCChHHHHHHHhhCCCCCe-------eeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC
Q 002772 431 YSRMGRIEISKTIFDDMEVRDT-------VSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN 503 (882)
Q Consensus 431 y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (882)
|...|++++|...|+++...+. ..+..+..++.+.|++++|+++++++.. ..++.
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~------------------~~P~~ 343 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN------------------NSPPF 343 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh------------------cCCce
Confidence 7788888888888777653221 2244455567777888888888887765 22111
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHH
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATD---VVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVII 577 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li 577 (882)
...+... .-.|+ ...+..+...+...|++++|+++|+++. +.+...+..+.
T Consensus 344 ~~~~~~~-----------------------~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 344 LRLYGSP-----------------------TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred EeecCCC-----------------------CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1111000 00122 2234556677778888888888888765 44567778888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
..+...|++++|++.+++.+. ..||. ..+......+...|++++|...++.+.+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888888888888888888887 44764 34455555677788888888888888865
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-11 Score=125.88 Aligned_cols=507 Identities=13% Similarity=0.081 Sum_probs=341.1
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC
Q 002772 166 EAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245 (882)
Q Consensus 166 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 245 (882)
.+++..++. -|+.+. |-++...+ .+.+.++.++...++.-+.+...|.+ |++..-++.|.++++...+
T Consensus 367 RVlRKALe~--iP~sv~---LWKaAVel---E~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVR---LWKAAVEL---EEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHh--CCchHH---HHHHHHhc---cChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 444444432 354443 23344444 55555777777777666555555554 4455567788888876654
Q ss_pred ---CCcccHHHHHHHHHcCCChHHHHHHHHH----HHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCc
Q 002772 246 ---RDLVSWNTIVSSLSQNDKFLEAVMFLRQ----MALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDN 318 (882)
Q Consensus 246 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 318 (882)
.+...|-+-...=-.+|+.+...++..+ +...|+..+...|..=..+|-..|..-....+...++.-| +...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig-vEee 513 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG-VEEE 513 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc-cccc
Confidence 4777887777666778888888887765 4567898888888888888888888888888888888877 4332
Q ss_pred --hhHHHHHHHHhhcCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHH
Q 002772 319 --SFVGSALVDMYCNCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVV 393 (882)
Q Consensus 319 --~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 393 (882)
..+++.-...+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++... .-|-
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~---~~pk-------- 582 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE---QCPK-------- 582 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCc--------
Confidence 34566666667777777777777665443 2334565555555555666666666666521 1121
Q ss_pred hHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHH
Q 002772 394 PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGD 470 (882)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 470 (882)
....+-....-+-..|++..|+.++.+.-+. +...|-+-+..-..+.++++
T Consensus 583 --------------------------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 583 --------------------------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred --------------------------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 1222223333334445555555554444311 23345555555555555555
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002772 471 ALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550 (882)
Q Consensus 471 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 550 (882)
|..+|.+... ..|+...|..-..----+++.++|.+++...++. ++.-...|-.+.+.|-
T Consensus 637 aR~llakar~-------------------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 637 ARDLLAKARS-------------------ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhc-------------------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 5555555542 3344444444444444455556666666555543 2333557777888888
Q ss_pred hcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHH
Q 002772 551 KCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVS 627 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~ 627 (882)
+.++++.|...|..-. .| .+-.|-.|...=-+.|+..+|-.+|++....+ +-|...|...+..-.+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN------Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN------PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC------CCcchhHHHHHHHHHHcCCHH
Confidence 8999999998888766 34 45567777777777888999999999988876 345677888888888999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 628 EGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 628 ~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
+|..+..+..+ ..+-+-..|.--|.+..+.++-..+.+.+++..-.| . +.-+....+.....++.|..-|+++++
T Consensus 771 ~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp--h-Vllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 771 QAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP--H-VLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccCCc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999888887 455567778888888889888888888888764433 3 667777778888899999999999999
Q ss_pred CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEe
Q 002772 708 LEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEF 755 (882)
Q Consensus 708 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 755 (882)
.+|++..++..+-..+...|.-++-.+++++.... .|.-|..|+.+
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 99999999999999999999988888888866543 35556777644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-13 Score=144.45 Aligned_cols=638 Identities=12% Similarity=0.041 Sum_probs=366.3
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC
Q 002772 63 LSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE 142 (882)
Q Consensus 63 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~ 142 (882)
.++-.+...|+.|+..||.+++..|+..|+.+.|- ++..|.-.... ....+++.++......+ +.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp-v~e~vf~~lv~sh~~An-d~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP-VREGVFRGLVASHKEAN-DAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc-ccchhHHHHHhcccccc-cccCCC-------C
Confidence 45667888899999999999999999999999998 99988877765 77888999999988888 766554 6
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhccCCcc----cchHHHHHHHHhhh
Q 002772 143 KDQVSWNSMIATLCRFGKWDLALEAFRM-ML-------YSNVEPSSFTLVSVALACSNLSRR----DGLRLGRQVHGNSL 210 (882)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~~~----~~~~~~~~~~~~~~ 210 (882)
|-..+|+.|..+|.+.||... ++..++ |. ..|+.--..-|...+..|-..-.+ .....-+.+.+..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999765 333332 22 223322222222222222222100 00011122233333
Q ss_pred hcC-------CCchhHHHHHHHHHHh-cCChhHHHHHHhcCC-CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 002772 211 RVG-------EWNTFIMNALMAMYAK-LGRVDDAKTLFKSFE-DRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP 281 (882)
Q Consensus 211 ~~g-------~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (882)
+.+ ...++.. .++-... ...+++-...-.... .++..+|.+++..-..+|+.+.|..++.+|++.|+..
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 322 1111111 1111111 122333333333333 3788899999999999999999999999999999999
Q ss_pred ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHh
Q 002772 282 DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYG 361 (882)
Q Consensus 282 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 361 (882)
+.+-|..+|-+ .++......+...|...| +.|+..++..-+-...+.|....+....+.--.-....+..+.++..
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 99988888877 778888888889999999 88888888776666655444322221111000000112233333211
Q ss_pred cCCChH-----HHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCC---CCchHHHHHHHHHHHh
Q 002772 362 QNEYDE-----EALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGL---GRDRYVQNALMDMYSR 433 (882)
Q Consensus 362 ~~g~~~-----~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~~ 433 (882)
.+.+.+ -.+..+++. --.|+.... +..++..-....|.-+..+++.+.+...-. ..++..+..++.-|.+
T Consensus 314 a~k~l~~nl~~~v~~s~k~~-fLlg~d~~~-aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKL-FLLGTDILE-AIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHH-HHhccccch-HHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 111111 111122221 112222222 112222222235666666666666543222 1223344444444433
Q ss_pred cCC----------------------hHHHHHHHhhCC----------------CCCeeeH-----------HHHHHHHHh
Q 002772 434 MGR----------------------IEISKTIFDDME----------------VRDTVSW-----------NTMITGYTI 464 (882)
Q Consensus 434 ~g~----------------------~~~A~~~~~~m~----------------~~~~~~~-----------~~li~~~~~ 464 (882)
.-+ ..+..++..... .+....| +.++..++.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 211 111111111110 1111222 223333444
Q ss_pred cCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHH--hcCCCchhHH
Q 002772 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR--NMLATDVVVG 542 (882)
Q Consensus 465 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~ 542 (882)
.-+..+++..-+.... -.-| ..|..+++-|.....++.|..+.+++.. ..+..|..-+
T Consensus 472 e~n~lK~l~~~ekye~------------------~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYED------------------LLFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred HHHHHHHHHHHHHHHH------------------HHhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 3334444433222222 1112 5688899999999999999999988764 3456788889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-----CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-Cc----------
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP-----VRN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRG-GE---------- 605 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~-----~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~---------- 605 (882)
..+.+.+.+.+...++..++.++. .|+ ..+.--+.++-+..|+.+..-++++-....|... +|
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd 611 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccc
Confidence 999999999999999999999987 232 2334456667777888887777777766655321 11
Q ss_pred --------------ccCChhHHHHHHHH---------------------HhccCCHHHHHHHHHHhHHhcCCC-------
Q 002772 606 --------------VKPNEVTFIALFAA---------------------CSHSGMVSEGMDLFYKMKDDYGIE------- 643 (882)
Q Consensus 606 --------------~~pd~~t~~~ll~a---------------------~~~~g~~~~a~~~~~~m~~~~~~~------- 643 (882)
.+|.......+.+. |.+.|.+.++.++.+. .|+.
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et----pG~r~r~~RDr 687 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET----PGVRCRNGRDR 687 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc----CcccccCCCcc
Confidence 12222212222222 2222333333222211 1111
Q ss_pred --------C---------ChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC---chhHHHHHHH
Q 002772 644 --------P---------SPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ---NVEIGEIAAQ 703 (882)
Q Consensus 644 --------p---------~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~---~~~~a~~~~~ 703 (882)
| +..+..-|+..|.+.|+++.|..++.+++..|... ...-|+..++.+. ++-++....+
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~-~l~~LAsIlr~~n~evdvPe~q~e~e 766 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPM-KLFHLASILRRMNEEVDVPEIQAETE 766 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchH-HHHHHHHHHHhhchhccchhHHHHHH
Confidence 1 12223447778999999999999999999888888 7788888887776 5567777778
Q ss_pred HHhcCCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002772 704 NLFLLEPDVASH---YVLLSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 704 ~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
++.++.|.++.+ |.-.+-+..+....+-|.+.+.+.+++..
T Consensus 767 kas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 767 KASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 888877665543 33333333333444477888888888744
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-12 Score=147.14 Aligned_cols=429 Identities=8% Similarity=-0.003 Sum_probs=290.4
Q ss_pred cchHHHHHHHHhhhhcCCCch-hHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHH---HHHHHcCCChHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNT-FIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTI---VSSLSQNDKFLEAVMFLR 272 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~ 272 (882)
|+...|...+..+++..+.+. .++ .++..+...|+.++|+..++....|+...+..+ ...+...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999998885543 444 899999999999999999999887755544443 346777899999999999
Q ss_pred HHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---C
Q 002772 273 QMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---K 349 (882)
Q Consensus 273 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~ 349 (882)
++.+.... +...+..+...+...++.++|.+.+..+.+.. ++...+..++..+...++..+|...++++.+. +
T Consensus 127 kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 127 SSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99986422 24556677788889999999999999988754 44555566666666677776799999998764 4
Q ss_pred ceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHH
Q 002772 350 IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429 (882)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 429 (882)
...+..+..++.+.|-...|+++..+- |+.++=...... -.....+.++.+..++..- .
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~-------p~~f~~~~~~~l---------~~~~~a~~vr~a~~~~~~~-~---- 261 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKEN-------PNLVSAEHYRQL---------ERDAAAEQVRMAVLPTRSE-T---- 261 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhC-------ccccCHHHHHHH---------HHHHHHHHHhhcccccccc-h----
Confidence 456788888999999999998876543 443332211110 0011112222221111100 0
Q ss_pred HHHhcCChHHHHHHHhhCCC-----CCe-eeH----HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccC
Q 002772 430 MYSRMGRIEISKTIFDDMEV-----RDT-VSW----NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
.+.--.+.|..-++.+.. |.. ..| --.+.++...|++.++++.|+.|.. . +
T Consensus 262 --~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---~--------------~ 322 (822)
T PRK14574 262 --ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---E--------------G 322 (822)
T ss_pred --hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---c--------------C
Confidence 000012233333333221 111 111 1234566677777777777777776 3 4
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNM-----LATDVVVGSALVDMYAKCGCLNFARRVFDLMPV--R---- 568 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~---- 568 (882)
.+.-..+-..+.+++...+.+++|..++..+.... ..++......|.-+|...+++++|..+++++.. |
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 44333466677777777778888888877776543 123444456788888888888888888887762 2
Q ss_pred -----------Ch-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 569 -----------NV-ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 569 -----------~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
|- .....++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++.+
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA------PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 122346777888999999999999998864 345667778888899999999999999776
Q ss_pred HHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCch
Q 002772 637 KDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKA 679 (882)
Q Consensus 637 ~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~ 679 (882)
.. +.|+ .......+..+...|++++|..+++.. ...|++.
T Consensus 477 ~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 477 ES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 63 4564 667778888888999999999888765 3456655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-11 Score=131.27 Aligned_cols=608 Identities=12% Similarity=0.092 Sum_probs=331.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHH
Q 002772 52 EARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMW 131 (882)
Q Consensus 52 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 131 (882)
+.-.|++++|.+++...++... -....|..|-..|-..|+.+.+... .++...+.|.|...|-.+-....+.| .++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~-~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLG-NIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcc-cHH
Confidence 3344999999999999988653 3566799999999999988877665 44455555688899999999999999 999
Q ss_pred HHHHHHhccCCCCceeHH---HHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHh
Q 002772 132 DVYKVFDRITEKDQVSWN---SMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGN 208 (882)
Q Consensus 132 ~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 208 (882)
.|+-.|.+..+.+..-|- --+..|-+.|+...|.+.|.+|.+.....|-.-+..++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i--------------------- 283 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI--------------------- 283 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH---------------------
Confidence 999999887653333233 34567788999999999999998753311111111111
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC-----CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCh
Q 002772 209 SLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED-----RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDG 283 (882)
Q Consensus 209 ~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (882)
-..+..|...++-+.|.+.++.... -+...+|.++..|.+...++.|......+......+|.
T Consensus 284 ------------~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 284 ------------RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred ------------HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 1233445555555667666665443 23446788888888888888888888888763333332
Q ss_pred hhH----------------------h----hHHHHhccCCChhHHHHHHHHHHHhCC-CCCchhHHHHHHHHhhcCCChH
Q 002772 284 VSI----------------------A----SVLPACSHLEMLDTGKEIHAYALRNDI-LIDNSFVGSALVDMYCNCREVE 336 (882)
Q Consensus 284 ~t~----------------------~----~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~~Li~~y~~~g~~~ 336 (882)
.-+ . -+.-++.+....+....+.....+... ...+...+.-+.++|...|++.
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 211 0 111222333333444444444433331 1223344555555555555555
Q ss_pred HHHHHHhccCCC----CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHH
Q 002772 337 CGRRVFDFISDK----KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHA 412 (882)
Q Consensus 337 ~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 412 (882)
+|.++|..+... +...|--+..+|...|.+++|++.|...
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv------------------------------------ 475 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV------------------------------------ 475 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH------------------------------------
Confidence 555555555432 3334555555555555555555555555
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCee-----eH-------HHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 413 IKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTV-----SW-------NTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 413 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-----~~-------~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
+... +.+..+--.|-..|-+.|+.++|.+.++.|..||.. .| -.....|.+.|+.++=+..-..|+.
T Consensus 476 l~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 476 LILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3332 223333445556666777777777777776655421 11 1223456667777665555555544
Q ss_pred hhhhhhcccc-----ccccccccCCCCCcchHhhHHHhhcCcchHHHHHH---HH---HHHHHhcCCCch--hHHHHHHH
Q 002772 481 MEEEKNRNNV-----YDLDETVLRPKPNSITLMTVLPGCGALSALAKGKE---IH---AYAIRNMLATDV--VVGSALVD 547 (882)
Q Consensus 481 ~~~~~~~~~~-----~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~---i~---~~~~~~g~~~~~--~~~~~li~ 547 (882)
......-.-. ........+.+-...+...+..+-.+.++.....+ -. ......|+..+. ..+.-++.
T Consensus 555 ~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 555 DFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 1111000000 00000000122222333333333333333211111 11 111112222221 24556777
Q ss_pred HHHhcCCHHHHHHHHhhCCC------CCh---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHH
Q 002772 548 MYAKCGCLNFARRVFDLMPV------RNV---ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALF 617 (882)
Q Consensus 548 ~y~k~g~~~~A~~~~~~m~~------~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll 617 (882)
.+++.|+.++|..+...+.. ++. ..-..++.+....+++..|.+.++.|+..-... ..|... .|+..+
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~--~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY--LDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHH
Confidence 88888999999888877652 111 122345566677888888888888888751000 123222 233233
Q ss_pred HHHhc-----------------------------------cCCHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHhh----
Q 002772 618 AACSH-----------------------------------SGMVSEGMDLFYKMKDDYGIEPSPDHYA-CVVDLLG---- 657 (882)
Q Consensus 618 ~a~~~-----------------------------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~l~---- 657 (882)
+..+. .+.+..|+.++-.... ..|+...++ ||.-++.
T Consensus 713 s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 713 SYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHH
Confidence 32222 3344555554444432 234422222 2222221
Q ss_pred ------ccCCHHHHHHHHHhC---CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc------------hH
Q 002772 658 ------RAGKVEDAYQLINMM---PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS------------HY 716 (882)
Q Consensus 658 ------r~g~~~eA~~~~~~m---~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------------~~ 716 (882)
|.-.+-.+..++++- ...-+.-.+.-+++.+|..-|=+-.|...+++++++.|.+.. +-
T Consensus 790 qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA 869 (895)
T KOG2076|consen 790 QRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAA 869 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHH
Confidence 111223334444322 111112226677888888888888888899999988764432 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHH
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
..|.-||.+.|+..-|..+.++
T Consensus 870 ~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 870 YNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred hhhhhhhccCCcHHHHHHHHHh
Confidence 3566788888888888877653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-12 Score=127.05 Aligned_cols=271 Identities=15% Similarity=0.107 Sum_probs=199.5
Q ss_pred HHHhcCChHHHHHHHhhCCCCCeeeHHH----HHH-HHHhcC-CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC
Q 002772 430 MYSRMGRIEISKTIFDDMEVRDTVSWNT----MIT-GYTICG-QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN 503 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~----li~-~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (882)
-|.+.|+++.|.+++.-...+|..+-++ |-. -|.+.| ++..|.+.-+..+. .-.-|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------------------~dryn 489 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------------------IDRYN 489 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------------------ccccC
Confidence 4677888888888777776555443222 211 223333 46666666666554 12222
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHH
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAY 580 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 580 (882)
....+.--+.....|++++|.+.+.++....-.-....|| +.-.|-+.|++++|+..|-++. ..++...-.+.+.|
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2222222233345688888888888887665333333443 3445778899999999998765 56777777888889
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccC
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG 660 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g 660 (882)
-...+..+|++++-+.... ++-|...+.-|...|-+.|+-.+|.+++-.--+ -++-+.++...|..-|....
T Consensus 569 e~led~aqaie~~~q~~sl------ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHhhCHHHHHHHHHHhccc------CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhH
Confidence 9999999999999887663 344567788888999999999999988766543 45667899999999999999
Q ss_pred CHHHHHHHHHhCC-CCCCchhhHHHHHHHH-HhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 661 KVEDAYQLINMMP-PEFDKAGAWSSLLGAC-RIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 661 ~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
-.++|..+|++.. +.|+.. -|.-++..| ++.||.+.|...++.+-...|.+....-.|..+....|.
T Consensus 641 f~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999874 688888 999998876 677899999999999999999999998889988888775
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-10 Score=123.29 Aligned_cols=517 Identities=11% Similarity=0.085 Sum_probs=330.4
Q ss_pred cchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhc---CCCCCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002772 197 DGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKS---FEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQ 273 (882)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 273 (882)
|+++.|..+...+++..+.+...|..|...|-..|+.+++...+-. +...|..-|-.+-.-..+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5566666666666666666666677777777777777777665533 2234556676666666777777777777776
Q ss_pred HHHCCCCCCh-hhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHH----HHHHhhcCCChHHHHHHHhccCC-
Q 002772 274 MALRGIKPDG-VSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSA----LVDMYCNCREVECGRRVFDFISD- 347 (882)
Q Consensus 274 m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~----Li~~y~~~g~~~~A~~~f~~m~~- 347 (882)
..+. .|+. ..+--=..-|-+.|+...|..-+.++.... .+.|..-.-. .+..|...++-+.|.+.++.-..
T Consensus 233 AI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 233 AIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 6654 2322 222333344556677777777777766654 2222222222 23445555666777776665544
Q ss_pred -C---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----------------------CCcchHh----hHHhHhh
Q 002772 348 -K---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW----------------------PNATTMS----SVVPACV 397 (882)
Q Consensus 348 -~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~----------------------p~~~t~~----~ll~~~~ 397 (882)
. +...+|.++..|.+...++.|......+ ...... |+...|. -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 2335777888888888888888777777 331111 1212221 2223345
Q ss_pred cCCCCcchhhHHHHHHHhC--CCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC----CeeeHHHHHHHHHhcCCHHHH
Q 002772 398 RSEAFPDKEGIHGHAIKLG--LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR----DTVSWNTMITGYTICGQHGDA 471 (882)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A 471 (882)
+....+....+.....+.. ...+...|.-+.++|...|++.+|.++|..+... +...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 5666677777777777777 4456678888999999999999999999988733 567899999999999999999
Q ss_pred HHHHHHHhhhhhhhhccccccccccccCCCCCcc-hHhhHHHhhcCcchHHHHHHHHHHHH--------HhcCCCchhHH
Q 002772 472 LMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-TLMTVLPGCGALSALAKGKEIHAYAI--------RNMLATDVVVG 542 (882)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~ 542 (882)
++.|...+. ..|+.. .-.+|-..+..+|+.++|.+.+..+. ..+..|+..+.
T Consensus 469 ~e~y~kvl~-------------------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 469 IEFYEKVLI-------------------LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred HHHHHHHHh-------------------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 999999986 455543 33344455677899999999988743 34566667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---------C-----------------ChhhHHHHHHHHHccCChhHHHHH----
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMPV---------R-----------------NVITWNVIIMAYGMHGEGQEVLEL---- 592 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~~---------~-----------------~~~~~~~li~~~~~~g~~~~A~~l---- 592 (882)
--..++|.+.|+.++-..+-..|.. | +..+...++.+-.+.++.....+-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 7778899999998875555444431 1 111112223333333221111110
Q ss_pred --HHHHHHcCCCCCcccCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHhhccCCHHH
Q 002772 593 --LKNMVAEGSRGGEVKPNE--VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD----HYACVVDLLGRAGKVED 664 (882)
Q Consensus 593 --~~~m~~~g~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~l~r~g~~~e 664 (882)
+.--...| +.-+. ..|.-++.++.+.+++++|..+...+...+-+.-+.. .-.+++.+-...+++.+
T Consensus 610 ~~~~~~e~~~-----Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 610 TEFRAVELRG-----LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred hhhhhhhhcc-----CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 01111111 11221 2356677788899999999999999887644433333 23456666778899999
Q ss_pred HHHHHHhCC------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-CchHHHHHHHHHHcCCchHHHHHHH
Q 002772 665 AYQLINMMP------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV-ASHYVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 665 A~~~~~~m~------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
|.+.++.|- ..|.....|+...+....+++-..-.+...+++...|++ +..+..-+......+.|..|+..+-
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ 764 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYM 764 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHH
Confidence 999998872 245555588877777888887777777777788888887 5556667777888899999988666
Q ss_pred HHHh
Q 002772 738 KMKE 741 (882)
Q Consensus 738 ~m~~ 741 (882)
..-.
T Consensus 765 ra~~ 768 (895)
T KOG2076|consen 765 RAFR 768 (895)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-09 Score=114.87 Aligned_cols=369 Identities=14% Similarity=0.086 Sum_probs=226.9
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP-DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVD 327 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~ 327 (882)
.+|+.--..|.+.+.++-|..+|...++. .| +...|..+...-..-|..+....+++.++.. .+.....+-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHH
Confidence 46666667777777777777777666553 23 2333444444444456666667777777665 3555566666667
Q ss_pred HhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcc
Q 002772 328 MYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPD 404 (882)
Q Consensus 328 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~ 404 (882)
-+...|++..|+.++...-+. +...|-+-+..-..+..+++|..+|.+. ....|+...|.--+..---.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka---r~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA---RSISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH---hccCCcchhhHHHhHHHHHhhhHHH
Confidence 777778888888777665442 3446888888888888888888888888 3455666555444444444556666
Q ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Q 002772 405 KEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484 (882)
Q Consensus 405 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (882)
|.++++..++. ++.-...|-.+...|-+.++++.|++.|. .-.+
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~-------------------------------~G~k---- 713 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYL-------------------------------QGTK---- 713 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHH-------------------------------hccc----
Confidence 66666655553 22223444444444555555555544443 3221
Q ss_pred hhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 002772 485 KNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDL 564 (882)
Q Consensus 485 ~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 564 (882)
.-|+ .+..|-.|.+.=-+.|.+-.|..+|++
T Consensus 714 ---------------~cP~----------------------------------~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 714 ---------------KCPN----------------------------------SIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred ---------------cCCC----------------------------------CchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 2233 233344444444555566666666665
Q ss_pred CC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 002772 565 MP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYG 641 (882)
Q Consensus 565 m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 641 (882)
.. +.|...|-..|..-.+.|..++|..+..+.++. .+-+...|..-|...-+.++-.....-++ .
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe------cp~sg~LWaEaI~le~~~~rkTks~DALk------k 812 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE------CPSSGLLWAEAIWLEPRPQRKTKSIDALK------K 812 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccchhHHHHHHhccCcccchHHHHHHH------h
Confidence 44 335566666666666666666666666666654 23334455555555555444333222222 2
Q ss_pred CCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHH
Q 002772 642 IEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLS 720 (882)
Q Consensus 642 ~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 720 (882)
.+-|..+.-.+..++-...+++.|.+.|.+. ...||..++|.-+...+.+||.-+.-..++.+....+|.....+...+
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 2345555666666666777777777777654 467888889999999999999999999999999999998877766665
Q ss_pred H
Q 002772 721 N 721 (882)
Q Consensus 721 ~ 721 (882)
.
T Consensus 893 K 893 (913)
T KOG0495|consen 893 K 893 (913)
T ss_pred h
Confidence 4
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-14 Score=146.91 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=114.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCC-CCCcchHhhHHH-hhcCcchHHHHHHHHHHHHHhcC
Q 002772 458 MITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRP-KPNSITLMTVLP-GCGALSALAKGKEIHAYAIRNML 535 (882)
Q Consensus 458 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~-~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~ 535 (882)
+...+.+.|++++|++++.+... .. .|+...|..++. .+...++.+.|.+.+..+...+.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~------------------~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~ 75 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQ------------------KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc------------------ccccccccccccccccccccccccccccccccccccccc
Confidence 35567788999999999976554 34 577666666554 45568899999999999988764
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF 613 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~ 613 (882)
. ++..+..++.. ...+++++|.+++.... .++...|..++..+.+.|+++++.+++++...... .+++...|
T Consensus 76 ~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~ 149 (280)
T PF13429_consen 76 A-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA----APDSARFW 149 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHH
T ss_pred c-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC----CCCCHHHH
Confidence 4 66677788877 78999999999988764 56677788889999999999999999999886430 34566677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHh
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~ 691 (882)
..+...+.+.|+.++|++.+++..+. .| +......++..+...|+.+++.++++... ..|+++..|..+..++..
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 78888899999999999999999874 56 47788999999999999999888877652 124444499999999999
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.|+.+.|...++++++.+|+|+.....++.++...|+.++|.+++.+.-
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999988653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=127.35 Aligned_cols=372 Identities=13% Similarity=0.015 Sum_probs=201.8
Q ss_pred CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHH
Q 002772 348 KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNAL 427 (882)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 427 (882)
++..++.+++.+-..+|+.+.|..++.+| +..|++.+..-|..++-+ .++....+.+..-|.+.|+.|+..|+..-
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 67888999999999999999999999999 889999999998888866 78888888999999999999999999887
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchH
Q 002772 428 MDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITL 507 (882)
Q Consensus 428 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~ 507 (882)
+-...+.|....+.+. .+....+++-..+-+-.| ..|.+.++.-...-.-+.... .-..|..-....|
T Consensus 278 vip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~-----~fLlg~d~~~aiw 345 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKK-----LFLLGTDILEAIW 345 (1088)
T ss_pred HHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhH-----HHHhccccchHHH
Confidence 7777776653333222 122222222222222223 222222222111000000000 0000221111111
Q ss_pred hhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh-HHHHHHHHHc---c
Q 002772 508 MTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVIT-WNVIIMAYGM---H 583 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~-~~~li~~~~~---~ 583 (882)
.. ..-....|.-+...++.+.+..- ....-+.-+++|. +.+.+.|.+...+.... ++ .-.+... .
T Consensus 346 s~-c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~~-----~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~s 414 (1088)
T KOG4318|consen 346 SM-CEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAFG-----ALLRQYFRRIERHICSRIYY-AGQGLSLNLNS 414 (1088)
T ss_pred HH-HHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHHH-----HHHHHHHHHHHhhHHHHHHH-HHHHHHhhhch
Confidence 11 11111244444444544444321 1111111111111 22344444444322111 11 1111111 1
Q ss_pred CChhHHHHHHHHH------------HHcCCCCCcccC-------ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 002772 584 GEGQEVLELLKNM------------VAEGSRGGEVKP-------NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP 644 (882)
Q Consensus 584 g~~~~A~~l~~~m------------~~~g~~~~~~~p-------d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 644 (882)
....+..++.... ..... .....| =...-+.++..|.+.-+..+++..-+..... -+ |
T Consensus 415 e~tp~vsell~~lrkns~lr~lv~Lss~El-er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf-~ 491 (1088)
T KOG4318|consen 415 EDTPRVSELLENLRKNSFLRQLVGLSSTEL-ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF-A 491 (1088)
T ss_pred hhhHHHHHHHHHhCcchHHHHHhhhhHHHH-hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-h
Confidence 1111222221111 00000 000111 1112344555666555555555443333321 22 2
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHHHhCC-----CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc---CCCCCCchH
Q 002772 645 SPDHYACVVDLLGRAGKVEDAYQLINMMP-----PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL---LEPDVASHY 716 (882)
Q Consensus 645 ~~~~~~~li~~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~---l~p~~~~~~ 716 (882)
..|..||+.+.+..++++|..+..+.. ..-+.. -+..+.....+++.+..+..+.+...+ ..|......
T Consensus 492 --g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~-~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~ 568 (1088)
T KOG4318|consen 492 --GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP-LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIIL 568 (1088)
T ss_pred --hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH-hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHH
Confidence 679999999999999999999998873 122333 556777777788877777777665444 455556667
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWI 753 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i 753 (882)
..+-|-.+..|+.+...++.+-+...|+.- .|--|.
T Consensus 569 f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 569 FPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 778888899999999999999999988866 455553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=131.22 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=200.4
Q ss_pred CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcC--CCchhHHHH
Q 002772 467 QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNML--ATDVVVGSA 544 (882)
Q Consensus 467 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~ 544 (882)
+..+|+.+|..... .+.-......-+..+|-.++++++++.+|+.+.+... .-+..+|++
T Consensus 334 ~~~~A~~~~~klp~------------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST 395 (638)
T KOG1126|consen 334 NCREALNLFEKLPS------------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHhhHH------------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH
Confidence 46789999999544 3444456667788899999999999999999987532 236778887
Q ss_pred HHHHHHhcCCHHH-HHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHHHhc
Q 002772 545 LVDMYAKCGCLNF-ARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAACSH 622 (882)
Q Consensus 545 li~~y~k~g~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~ 622 (882)
.+--+-+.=.+.. |..+.+.+ +-...+|.++.+.|..+++.+.|++.|++.++ +.| ...+|+.+..-+..
T Consensus 396 ~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-------ldp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 396 TLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-------LDPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-------cCCccchhhhhcCChhhh
Confidence 7755543322222 33333332 34578999999999999999999999999998 557 57888888888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHH---HHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACV---VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l---i~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
...+|.|...|+..+ ..+..||+++ .-.|.|.++++.|+-.|++. .+.|.+..+...+...+.+.|+.|.|
T Consensus 468 ~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred hHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 899999999998776 3577888875 55689999999999999876 68888886777888889999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...+++++-++|.|+-.-+..+.++...+++++|+..++++++-
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999884
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-10 Score=114.61 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=172.1
Q ss_pred cchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHH
Q 002772 517 LSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELL 593 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 593 (882)
.|+.-.+.+-++.+++....+.. .|--+..+|....+.++..+.|+... +.|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46677777788888776544332 36667778999999999999999876 446777877777777789999999999
Q ss_pred HHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 594 KNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 594 ~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
++.+. +.|+ ...|.-+-.+.-+.+.++++...|++.++ .++-.++.|+-....|...+++++|.+.++..
T Consensus 418 ~Kai~-------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 418 QKAIS-------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHhh-------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99998 4465 56788888888889999999999999998 45667899999999999999999999999864
Q ss_pred -CCCCC------chh--hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 673 -PPEFD------KAG--AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 673 -~~~p~------~~~--~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
..+|. ++. +-.+++..-.+ +|+..|+...+++++++|....+|..|+.+-.+.|+.++|.++|++-
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44554 110 33344433333 89999999999999999999999999999999999999999999864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-11 Score=126.13 Aligned_cols=277 Identities=13% Similarity=0.024 Sum_probs=212.6
Q ss_pred ChHHHHHHHhhCCC--CCeeeH--HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH
Q 002772 436 RIEISKTIFDDMEV--RDTVSW--NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL 511 (882)
Q Consensus 436 ~~~~A~~~~~~m~~--~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll 511 (882)
+..+|...|..++. .|+. | .-+..+|...+++++|.++|+.+.+... -..-+...|+++|
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p---------------~rv~~meiyST~L 397 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEP---------------YRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------ccccchhHHHHHH
Confidence 46788888888652 3444 4 3456789999999999999999976210 0112345677777
Q ss_pred HhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhH
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQE 588 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 588 (882)
..+-+.-. ...+.+-.-.--+..+.+|.++.++|+-+++.+.|++.|++.. +| ...+|+-+..-+.....+|.
T Consensus 398 WHLq~~v~----Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 398 WHLQDEVA----LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HHHHhhHH----HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHh
Confidence 65533211 1122211112234578899999999999999999999999987 33 67888888888899999999
Q ss_pred HHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHH
Q 002772 589 VLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAY 666 (882)
Q Consensus 589 A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~ 666 (882)
|...|+..+. +.|+. -.|..+...|.+.++++.|+-.|+++. .+.|. .....++...+-+.|+.|+|+
T Consensus 474 a~~~fr~Al~-------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 474 AMKSFRKALG-------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred HHHHHHhhhc-------CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 9999999976 44654 477788889999999999999999987 56775 666777888999999999999
Q ss_pred HHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 667 QLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 667 ~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+++++. ..+|.++-.----+..+...++.++|...+|++.++-|+++..|.+|+.+|.+.|+.+.|+.-+..+.+.
T Consensus 544 ~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999986 4455554233344556677789999999999999999999999999999999999999999776665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-09 Score=110.59 Aligned_cols=357 Identities=11% Similarity=0.066 Sum_probs=228.0
Q ss_pred CCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHh--hHH
Q 002772 316 IDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMS--SVV 393 (882)
Q Consensus 316 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~--~ll 393 (882)
..|.+..-.....+-+.|....|+..|.....+-+..|.+.+....-.-+.+.+..+. .+...|..-+. .+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~------~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV------VGLPSDMHWMKKFFLK 234 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH------hcCcccchHHHHHHHH
Confidence 4444444444455566777888888887766655555555544322222222221111 12222211111 123
Q ss_pred hHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHH
Q 002772 394 PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALM 473 (882)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 473 (882)
.++......+++.+-.......|++.+...-+-...++-...++|.|..+|+++...|+.-
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------- 295 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-------------------
Confidence 3444444555555555556666665555544444444445555555555555554322110
Q ss_pred HHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 002772 474 LLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG 553 (882)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g 553 (882)
--|..||+.+|-.-.....+.---+....+ . +--+.+...+.+-|+-.+
T Consensus 296 ---------------------------l~dmdlySN~LYv~~~~skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 296 ---------------------------LDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRS 344 (559)
T ss_pred ---------------------------chhHHHHhHHHHHHhhhHHHHHHHHHHHHh--c--cCCccceeeehhHHHHHH
Confidence 012234444443322221111111111111 1 123456667778888889
Q ss_pred CHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH
Q 002772 554 CLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630 (882)
Q Consensus 554 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 630 (882)
+.+.|...|++.. +.-...|+-|.+-|....+...|++.|++.++-+ +-|-..|-.|..+|.-.+...-|+
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~------p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN------PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC------chhHHHHhhhhHHHHHhcchHHHH
Confidence 9999999999876 3456789999999999999999999999999854 457789999999999999999999
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCCCC--CCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 631 DLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMPPE--FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 631 ~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~--p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
-+|++..+ ++| |...|.+|.++|.+.++++||.+-++..-.- .+.. ++..|...+...++.++|...+++-++
T Consensus 419 yYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~-~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 419 YYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS-ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999874 455 6889999999999999999999999876322 2224 888999999999999999999998887
Q ss_pred -------CCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 708 -------LEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 708 -------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.+|+...+-.-|++-+.+.++|++|...-..
T Consensus 495 ~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 495 VSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3455555666788999999999999875553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-10 Score=113.81 Aligned_cols=292 Identities=13% Similarity=0.097 Sum_probs=194.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchh
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVV 540 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 540 (882)
-|.++|+++.|++++.-..++.. ....-..+-.+.|.-...-.++..|.+.-+.++... .-+..
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdn---------------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~ 491 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDN---------------KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAA 491 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccc---------------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHH
Confidence 57789999999999887765110 111111111222332333345666666655544221 01111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH---HHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIM---AYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF 617 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll 617 (882)
..+.-...-...|+++.|.+.+.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i------l~nn~evl~qia 565 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI------LLNNAEVLVQIA 565 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------HHhhHHHHHHHH
Confidence 11111223335699999999999998777655544433 467789999999999888663 344566777888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH-hCCCCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN-MMPPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~-~m~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
+-|....+..+|++++.+... -++.|+...+-|.++|-+.|+-..|.+..- .-..-|.+..+..-|...|....-.|
T Consensus 566 niye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 889999999999999988764 455678999999999999999999988653 44444555545455555566666779
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHH
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLH 776 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~ 776 (882)
.+...++++--+.|..+.-..+++..+.+.|++.+|.++++....+= ..+..|--.. .-+.||.--.+.+|.-
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkfl------vri~~dlgl~d~key~ 716 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFL------VRIAGDLGLKDAKEYA 716 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHH------HHHhccccchhHHHHH
Confidence 99999999999999888777788889999999999999999876542 1111221100 0134565556666666
Q ss_pred HHHHHHH
Q 002772 777 GFLENLS 783 (882)
Q Consensus 777 ~~l~~l~ 783 (882)
.+|+.+.
T Consensus 717 ~klek~e 723 (840)
T KOG2003|consen 717 DKLEKAE 723 (840)
T ss_pred HHHHHHH
Confidence 6666553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-09 Score=111.74 Aligned_cols=232 Identities=16% Similarity=0.034 Sum_probs=172.8
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHH
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVI 576 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~l 576 (882)
.+++...+..-|..+...|+..+-..+-..+++. .+....+|-++.--|.-.|+..+|++.|.+.. ..-...|-..
T Consensus 274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f 352 (611)
T KOG1173|consen 274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF 352 (611)
T ss_pred CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH
Confidence 3333333333344444444444433333333332 34466778888888888899999999999876 2335789999
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 002772 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDL 655 (882)
Q Consensus 577 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 655 (882)
...|+-.|..++|+..|...-+. ++-....+.-+.--|.+.+..+.|.++|.+.. ++-|+ +..++-+.-+
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl------~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARL------MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVV 423 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHh------ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhhe
Confidence 99999999999999999988774 22233444555566888999999999999886 66664 5666667666
Q ss_pred hhccCCHHHHHHHHHhCC--------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC
Q 002772 656 LGRAGKVEDAYQLINMMP--------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~--------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
.-..+.+.+|..+|+... ..+....+|+.|+-+|++.+..++|...+++++.+.|.++.+|..++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 777888999988887542 122122268899999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHh
Q 002772 728 LWDKAMDVRKKMKE 741 (882)
Q Consensus 728 ~~~~a~~~~~~m~~ 741 (882)
+.+.|.+.+.+...
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999986543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-08 Score=99.50 Aligned_cols=489 Identities=11% Similarity=0.060 Sum_probs=347.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhcc
Q 002772 219 IMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSH 295 (882)
Q Consensus 219 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (882)
.|-.-...=...+++..|+.+|+.... +++..|---+..=.++..+..|..++++....=...|..-| --+-.=-.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHH
Confidence 333333333446788899999998764 66777888888889999999999999988764222233222 22223345
Q ss_pred CCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC--CCCceehHHHHHHHhcCCChHHHHHHH
Q 002772 296 LEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS--DKKIALWNAMITGYGQNEYDEEALMLF 373 (882)
Q Consensus 296 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 373 (882)
+|++..|+++|..-.+ ..|+...+++.|+.=.+...++.|+.++++.. .|++.+|--...-=-++|....|..+|
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7899999999999877 67999999999999999999999999999854 688888988888888899999999999
Q ss_pred HHHHHHcCCCCCcchHhhHHhHhh----cCCCCcchhhHHHHHHHhCCCC-chHHHHHHHHHHHhcCChH---HHHHH--
Q 002772 374 IKMEEVAGLWPNATTMSSVVPACV----RSEAFPDKEGIHGHAIKLGLGR-DRYVQNALMDMYSRMGRIE---ISKTI-- 443 (882)
Q Consensus 374 ~~m~~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~---~A~~~-- 443 (882)
......-| |...-..++.+++ +...++.|.-++..++..-... ....|..+...--+-|+.. ++.--
T Consensus 231 erAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 88733322 2333333344443 4567788888888888653222 2345555555545556543 33322
Q ss_pred ---HhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc-------hHhhH
Q 002772 444 ---FDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-------TLMTV 510 (882)
Q Consensus 444 ---~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-------t~~~l 510 (882)
++.+... |-.+|--.+..-...|+.+...++|++.+. +++|-.. .|.-+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa------------------nvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA------------------NVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc------------------cCCchhHHHHHHHHHHHHH
Confidence 2233322 556777788888888999999999999997 7877432 22222
Q ss_pred HHhh---cCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH----hcCCHHHHHHHHhhCC--CCChhhHHHHHHHHH
Q 002772 511 LPGC---GALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA----KCGCLNFARRVFDLMP--VRNVITWNVIIMAYG 581 (882)
Q Consensus 511 l~a~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~ 581 (882)
=.+| ....+++.++++++..++ -++...+++.-+=-+|+ ++-++..|.+++.... .|-..++...|..=.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2232 356789999999999988 45556677777666665 6789999999998876 677788888888888
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCC
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGK 661 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~ 661 (882)
+.++++..-.+|++.++-+ +-|..+|......=...|+.+.|..+|+-+.....+..-...|.+.|+.=...|.
T Consensus 449 qL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 9999999999999999965 3356788877777778899999999999998753333334567788888889999
Q ss_pred HHHHHHHHHhCCC-CCCchhhHHHHHHHHH-----hcC-----------chhHHHHHHHHHhcC----CCCCCch--HHH
Q 002772 662 VEDAYQLINMMPP-EFDKAGAWSSLLGACR-----IHQ-----------NVEIGEIAAQNLFLL----EPDVASH--YVL 718 (882)
Q Consensus 662 ~~eA~~~~~~m~~-~p~~~~~~~~ll~a~~-----~~~-----------~~~~a~~~~~~~~~l----~p~~~~~--~~~ 718 (882)
++.|..++++.-. .+-.. +|-++...-. ..+ ++..|..+|+++... +|..... .-.
T Consensus 523 ~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEa 601 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEA 601 (677)
T ss_pred HHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998743 34445 9998876544 333 566788888887753 3432222 223
Q ss_pred HHHHHHHcCCchHHHHHHHHHH
Q 002772 719 LSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 719 l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.-++-...|.-.+...|-.+|.
T Consensus 602 w~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 602 WKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHHHhcCchhhHHHHHHhcc
Confidence 3445555676666666666653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=116.30 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=168.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
....+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+.. +.+...+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------PNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHH
Confidence 45677788999999999999999999875 3456788889999999999999999999999864 33456777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
.+...+...|++++|.++|+..............+..+...+.+.|++++|.+.+++. ...|+....|..+...+...|
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 8888899999999999999999874222234567788899999999999999999875 445666658889999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+.+.|...+++++++.|+++..+..++.++...|++++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999998899999999999999999999988877553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-09 Score=116.50 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHH
Q 002772 609 NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLG 687 (882)
Q Consensus 609 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~ 687 (882)
+......+..++...|+.++|.+.+++..+. .|+.... ++......|+.+++.+.+++. ...|+++..+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3444455555555555555555555555432 2332111 112222335666666655544 346677656667777
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
.|...++.+.|+..++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-
T Consensus 337 l~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888888888888888888888864 44667888888888888888777754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-09 Score=117.45 Aligned_cols=141 Identities=11% Similarity=-0.036 Sum_probs=83.9
Q ss_pred HHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH---HHHHHHHhccCCHHHH
Q 002772 556 NFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF---IALFAACSHSGMVSEG 629 (882)
Q Consensus 556 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~---~~ll~a~~~~g~~~~a 629 (882)
+...+.++..+ +.+...+..++..+...|+.++|++++++.++.. ||.... ..........++.+.+
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-------pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-------GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-------CCcccchhHHHHHhhhcCCCChHHH
Confidence 34444444444 2366667777777777777777777777777743 444321 1111111122334444
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCch--hhHHHHHHHHHhcCchhHHHHHHH--HH
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKA--GAWSSLLGACRIHQNVEIGEIAAQ--NL 705 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~--~~~~~ll~a~~~~~~~~~a~~~~~--~~ 705 (882)
.+.++...+ ..|+++ ....++.+.|...|+.+.|...++ .+
T Consensus 319 ~~~~e~~lk-----------------------------------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 319 EKLIEKQAK-----------------------------------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHHHHHH-----------------------------------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 444433332 245554 466777777777777777777777 46
Q ss_pred hcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 706 FLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 706 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 364 ~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 364 CKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667775544 558888888888888888877764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-10 Score=121.04 Aligned_cols=252 Identities=15% Similarity=0.046 Sum_probs=184.8
Q ss_pred HhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhH
Q 002772 463 TICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVV 541 (882)
Q Consensus 463 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 541 (882)
...|+++.|.+.+.+..+ ..|+... +.....+....|+.+.+.+.+..+.+....+...+
T Consensus 95 ~~~g~~~~A~~~l~~~~~-------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD-------------------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HhCCCHHHHHHHHHHHhh-------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH
Confidence 357999999999988754 4455443 33445567788999999999999887553333345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH-HHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI-ALF 617 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~-~ll 617 (882)
.-.....+...|+++.|...++.+. +.+...+..+...|.+.|++++|.++++++.+.+ +. +...+. .-.
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~-~~~~~~~l~~ 229 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LF-DDEEFADLEQ 229 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CC-CHHHHHHHHH
Confidence 5556888899999999999999987 3466778889999999999999999999999987 33 322221 111
Q ss_pred HH---HhccCCHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHH--HH
Q 002772 618 AA---CSHSGMVSEGMDLFYKMKDDY--GIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLG--AC 689 (882)
Q Consensus 618 ~a---~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~--a~ 689 (882)
.+ ....+..+++.+.+..+.+.. ..+.+...+.+++..+...|+.++|.+.+++. ...|++......++. ..
T Consensus 230 ~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~ 309 (409)
T TIGR00540 230 KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR 309 (409)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh
Confidence 11 123333344444555555431 11237889999999999999999999999876 345666522111222 23
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCC--chHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 690 RIHQNVEIGEIAAQNLFLLEPDVA--SHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p~~~--~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
...++.+.+...+++.++..|+++ .....|++++.+.|+|++|.+.++..
T Consensus 310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 334788999999999999999999 88999999999999999999999953
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-09 Score=118.05 Aligned_cols=254 Identities=10% Similarity=0.017 Sum_probs=151.0
Q ss_pred hcCCCCcchhhHHHHHHHhCCCCchH--HHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHH
Q 002772 397 VRSEAFPDKEGIHGHAIKLGLGRDRY--VQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGDA 471 (882)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 471 (882)
.+.|+++.+.+.+..+.+. .|+.. ........+...|+.+.|...++.+.+. +......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555442 23322 2223356777788888888888877632 455667778888888888888
Q ss_pred HHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 002772 472 LMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAK 551 (882)
Q Consensus 472 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k 551 (882)
++++.++.+ . ... +...+..+ ....|..++....+
T Consensus 207 ~~~l~~l~k---~--------------~~~-~~~~~~~l---------------------------~~~a~~~l~~~~~~ 241 (398)
T PRK10747 207 LDILPSMAK---A--------------HVG-DEEHRAML---------------------------EQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHHHHHH---c--------------CCC-CHHHHHHH---------------------------HHHHHHHHHHHHHH
Confidence 888888876 2 111 11111000 00112222222233
Q ss_pred cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHH
Q 002772 552 CGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSE 628 (882)
Q Consensus 552 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~ 628 (882)
..+.+...++++.++ +.+......+..++...|+.++|.+++++..+. .||... .++.+....++.++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-------~~~~~l--~~l~~~l~~~~~~~ 312 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-------QYDERL--VLLIPRLKTNNPEQ 312 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCHHH--HHHHhhccCCChHH
Confidence 334555556666655 345566666777777777777777777777663 244421 12233334477777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 629 GMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 629 a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
+.+..+...+. .+-|...+.++..++.+.|++++|.+.|+.. ...|+.. .+..|..++...|+.+.|...+++.++
T Consensus 313 al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777653 2334555667777777777777777777765 4456666 666777777777777777777777766
Q ss_pred CC
Q 002772 708 LE 709 (882)
Q Consensus 708 l~ 709 (882)
+.
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 53
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=128.73 Aligned_cols=250 Identities=12% Similarity=0.098 Sum_probs=91.6
Q ss_pred HHHHHhcCChHHHHHHHhh-CC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCC
Q 002772 428 MDMYSRMGRIEISKTIFDD-ME----VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKP 502 (882)
Q Consensus 428 i~~y~~~g~~~~A~~~~~~-m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p 502 (882)
..++.+.|++++|.++++. +. ..|...|..+.......+++++|.+.++++.. . -+-
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~---~---------------~~~ 76 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA---S---------------DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---c---------------ccc
Confidence 4445555555555555532 11 11333444444444455556666666666554 1 111
Q ss_pred CcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHH
Q 002772 503 NSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVII 577 (882)
Q Consensus 503 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li 577 (882)
+...+..++.. ...+++++|.++.....+.. ++...+..++..|.+.|+++++..+++... +.+...|..+.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 22233333333 45555566655554443322 344555666777777777777777777643 34566677777
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
..+.+.|+.++|++.|++.++. .|+ ......++..+...|+.+++.++++...+. .+.+...+..+..++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~-------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALEL-------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHh
Confidence 7777888888888888888774 365 455667777777778888777777777664 245556677777778
Q ss_pred hccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 657 GRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
...|+.++|+.++++. ...|+++.++..+..++...|+.+.|..+.+++++
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888877765 33566664666777778888888888877777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-07 Score=97.00 Aligned_cols=375 Identities=11% Similarity=0.077 Sum_probs=216.0
Q ss_pred cHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhc
Q 002772 79 AFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRF 158 (882)
Q Consensus 79 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 158 (882)
.|..-+.-..++|++..-+..|+..+..-+-.....+|...+......+ -++.+.+++++..+-+...-+--|..+++.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444445556677777777777776655322145566777777777777 788888888887665656677888888899
Q ss_pred CCchHHHHHHHHHHHCC------CCCChhhHHHHHHHhccCCcccchHH---HHHHHHhhhhcC-CCchhHHHHHHHHHH
Q 002772 159 GKWDLALEAFRMMLYSN------VEPSSFTLVSVALACSNLSRRDGLRL---GRQVHGNSLRVG-EWNTFIMNALMAMYA 228 (882)
Q Consensus 159 g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~~~~---~~~~~~~~~~~g-~~~~~~~~~Li~~y~ 228 (882)
+++++|-+.+....... -+.+...|.-+-...++. .+.-. ...+...++..- +.-..+|++|.+-|.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~---p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN---PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC---cchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 99999988887765332 122333455444444444 22222 222222222222 344578999999999
Q ss_pred hcCChhHHHHHHhcCCCC--CcccHHHHHHHHHc----------------CCC------hHHHHHHHHHHHHCCC-----
Q 002772 229 KLGRVDDAKTLFKSFEDR--DLVSWNTIVSSLSQ----------------NDK------FLEAVMFLRQMALRGI----- 279 (882)
Q Consensus 229 ~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~l~~~m~~~g~----- 279 (882)
+.|.+++|+.+|++.... .+.-++.+-+.|++ .|+ ++-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 999999999999875431 22223333333322 111 1222333444333210
Q ss_pred ---C--C-ChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCC------chhHHHHHHHHhhcCCChHHHHHHHhccCC
Q 002772 280 ---K--P-DGVSIASVLPACSHLEMLDTGKEIHAYALRNDILID------NSFVGSALVDMYCNCREVECGRRVFDFISD 347 (882)
Q Consensus 280 ---~--p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 347 (882)
. | +..++..-.. ...|+..+-...+..+++.- .| -...+..+.+.|-..|+++.|+.+|++...
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 0 1 1111211111 12344555556677766652 22 224577888889999999999999988765
Q ss_pred CCce-------ehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCc
Q 002772 348 KKIA-------LWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRD 420 (882)
Q Consensus 348 ~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 420 (882)
-+-. +|-.....=.+..+++.|+++.++. . ..|.... +. +...+..- +..+..+
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A---~-~vP~~~~----~~-~yd~~~pv----------Q~rlhrS 476 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA---T-HVPTNPE----LE-YYDNSEPV----------QARLHRS 476 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh---h-cCCCchh----hh-hhcCCCcH----------HHHHHHh
Confidence 4322 4555555556677778888876655 2 2232211 11 11111110 1111234
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHH---HHHhcCCHHHHHHHHHHHhh
Q 002772 421 RYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMIT---GYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 421 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~ 480 (882)
..+|...++.--..|-++..+.+++.+.+--+.|=..+++ -+-.+..++++.+++++-+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 5567777777778889999999999887443333332222 23345668888888887655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-09 Score=108.47 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=202.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH-HhhcCcchHHHHHHHHHHHHHhcCC--C
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL-PGCGALSALAKGKEIHAYAIRNMLA--T 537 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~--~ 537 (882)
+|-...+.++++.-...... . |. |+..-+.+.+ .+.-+..++++|..+|+.+.+...- .
T Consensus 236 a~~el~q~~e~~~k~e~l~~---~--------------gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS---V--------------GF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh---c--------------cC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch
Confidence 44444455666665555554 2 33 3333333333 3345667888888888888876321 2
Q ss_pred chhHHHHHHHHHHhcCCHH-HHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHH
Q 002772 538 DVVVGSALVDMYAKCGCLN-FARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIA 615 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ 615 (882)
|..+|+.++-.--.+.++. -|..+++ +.+--..|..++.+-|...++.++|+..|++.++.+ |. ...|+.
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTL 369 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTL 369 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHH
Confidence 5566666553333222222 2333332 222334566667788888999999999999999955 66 556777
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
+..-|....+...|.+-++.+.+ +.| |-..|-.|.++|.-.+...=|+-+|++. ..+|++..+|.+|+..|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Confidence 78889999999999999999984 445 6778899999999999999999999987 578988889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchH
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSE 773 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~ 773 (882)
+.++|++.+++++.....+..+|+.|+++|.+.++.++|...+++-.+.-. ......|+..
T Consensus 447 ~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~-------------------~eg~~~~~t~ 507 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE-------------------LEGEIDDETI 507 (559)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------hhcccchHHH
Confidence 999999999999999988889999999999999999999999887654210 0011235566
Q ss_pred HHHHHHHHHHHHHHH
Q 002772 774 QLHGFLENLSERMRK 788 (882)
Q Consensus 774 ~i~~~l~~l~~~m~~ 788 (882)
++..+|.+-+.+|+.
T Consensus 508 ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHHhhcc
Confidence 666777777777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-11 Score=88.48 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=48.4
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhcc
Q 002772 246 RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSH 295 (882)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (882)
||+++||++|.+|++.|++++|+++|++|++.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-11 Score=86.59 Aligned_cols=50 Identities=32% Similarity=0.559 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhc
Q 002772 568 RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH 622 (882)
Q Consensus 568 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~ 622 (882)
||+++||++|.+|++.|++++|.++|++|.+.| ++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-----~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-----IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHcC
Confidence 799999999999999999999999999999999 99999999999999975
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-07 Score=92.84 Aligned_cols=268 Identities=10% Similarity=-0.026 Sum_probs=189.5
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHH---HHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccc
Q 002772 416 GLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTM---ITGYTICGQHGDALMLLREMQNMEEEKNRNNVYD 492 (882)
Q Consensus 416 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 492 (882)
-++.++....++.+.|...|+.++|...|++...-|..+..+| ...+.+.|+++..-.+...+..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~------------ 294 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA------------ 294 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh------------
Confidence 3566677777888888888888888888887764444443332 3345667788877777777765
Q ss_pred ccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 002772 493 LDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRN 569 (882)
Q Consensus 493 ~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~ 569 (882)
-.+-....+..-+...-...+.+.|..+-...++.... +...+-.-...+...|+.++|.-.|.... +-+
T Consensus 295 ------~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 295 ------KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred ------hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 11122222222222333456666776666666654321 23333333456677899999999998765 458
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-h
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF-AACS-HSGMVSEGMDLFYKMKDDYGIEPS-P 646 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~ 646 (882)
..+|..|+..|...|++.||.-+-+..... ..-+..+.+.+. ..|. ....-++|.+++++.. .+.|+ .
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~ 438 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRL------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYT 438 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccH
Confidence 899999999999999999999988887764 334555655552 3332 2334578888888876 45676 5
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
.....+..++.+.|+.+++..++++. ...||.. ..+.|....+..+..+.+...|..++.++|++
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 56677888999999999999999875 5678888 89999999999999999999999999999987
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-07 Score=96.15 Aligned_cols=412 Identities=12% Similarity=0.079 Sum_probs=290.9
Q ss_pred cCCChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcch-HhhHHhHhhcCCCCcchh
Q 002772 331 NCREVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATT-MSSVVPACVRSEAFPDKE 406 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~ 406 (882)
..+++..|+.+|++..+ +++..|---+..=.++.....|..+++.. -.+-|...- +---+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRA---vt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRA---VTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHH---HHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 45667778888887665 35556777777777888888888888777 223343321 112222233468888999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Q 002772 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME--VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEE 484 (882)
Q Consensus 407 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 484 (882)
++|..-.+ ..|+...|++.|+.-.+-..++.|+.+++... .|++.+|--...-=.++|+...|..+|....+
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie---- 235 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE---- 235 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----
Confidence 99887765 57999999999999999999999999999865 78888888888878889999999999998876
Q ss_pred hhccccccccccccCCCCCcchHhhHHHhhc----CcchHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhcCCHH---
Q 002772 485 KNRNNVYDLDETVLRPKPNSITLMTVLPGCG----ALSALAKGKEIHAYAIRNMLATD-VVVGSALVDMYAKCGCLN--- 556 (882)
Q Consensus 485 ~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~--- 556 (882)
-+ .|...-..++.+++ ....++.|.-++..+++.-.... ...|..+...=-+-|+..
T Consensus 236 --------------~~-~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 236 --------------FL-GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred --------------Hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 12 22222333444443 46778889999998887643321 445555555444556544
Q ss_pred HHHHHHhhCC--------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-------HHHHHHHHH-
Q 002772 557 FARRVFDLMP--------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-------TFIALFAAC- 620 (882)
Q Consensus 557 ~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-------t~~~ll~a~- 620 (882)
++.--=.++. +-|-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+--+|
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan------vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN------VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc------CCchhHHHHHHHHHHHHHHHHHH
Confidence 4432222222 347788888888888889999999999999985 566321 122222222
Q ss_pred --hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH----hhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 621 --SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDL----LGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 621 --~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~----l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
....+++.+.++|+..++ -|+-...+++-+=-+ ..|+.++..|.+++-.. ..-|.+. ++...+..-.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHh
Confidence 346889999999999886 344445566554444 45889999999998754 4567777 8888888888899
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchH
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSE 773 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~ 773 (882)
+++....++++.++..|.+..++.-.+.+-...|++|.|..+++....+...-.|..-|- ....|-.....+..+.
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKAR 527 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHH
Confidence 999999999999999999999999999999999999999999998888876666666662 2223333344445555
Q ss_pred HHHHHH
Q 002772 774 QLHGFL 779 (882)
Q Consensus 774 ~i~~~l 779 (882)
.+|..|
T Consensus 528 ~LYerl 533 (677)
T KOG1915|consen 528 ALYERL 533 (677)
T ss_pred HHHHHH
Confidence 555433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.2e-09 Score=119.60 Aligned_cols=245 Identities=16% Similarity=0.046 Sum_probs=182.9
Q ss_pred CHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-HhhHHHhh---------cCcchHHHHHHHHHHHHHhcCC
Q 002772 467 QHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-LMTVLPGC---------GALSALAKGKEIHAYAIRNMLA 536 (882)
Q Consensus 467 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-~~~ll~a~---------~~~~~~~~a~~i~~~~~~~g~~ 536 (882)
..++|+++|++..+ ..|+... +..+..++ ...+++++|...+..+++.. +
T Consensus 276 ~~~~A~~~~~~Al~-------------------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P 335 (553)
T PRK12370 276 SLQQALKLLTQCVN-------------------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-H 335 (553)
T ss_pred HHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-C
Confidence 46789999999875 5566543 32222222 13456889999999998875 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-H
Q 002772 537 TDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-T 612 (882)
Q Consensus 537 ~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t 612 (882)
.+...+..+..++...|++++|...|++.. .| +...|..+...|...|++++|++.+++.++.+ |+.. .
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P~~~~~ 408 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------PTRAAA 408 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCChhh
Confidence 367788888999999999999999999876 44 46778889999999999999999999999954 6643 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 613 FIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 613 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
+..++..+...|++++|...++++.+. ..| +...+..+..+|...|+.++|...++++ +..|+....++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566689999999999998763 234 4556788889999999999999999886 445665546777777777
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..| +.+...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788888887775433333344488889999998888777 7776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-06 Score=94.62 Aligned_cols=601 Identities=11% Similarity=0.086 Sum_probs=333.9
Q ss_pred HHHHHhcCCCchhHHHHHHH----------HHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC--CCceeHHH
Q 002772 83 VLKAVAGIQDLSLGKQIHAH----------VVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE--KDQVSWNS 150 (882)
Q Consensus 83 ll~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~--~~~~~~~~ 150 (882)
.+..|.+.+-+..+.+.+.+ ..+.|.. ||. --+++...+ - +++++.+....+++ +...-.+.
T Consensus 474 AL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyT-Pdy---mflLq~l~r-~-sPD~~~qFa~~l~Q~~~~~~die~ 547 (1666)
T KOG0985|consen 474 ALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYT-PDY---MFLLQQLKR-S-SPDQALQFAMMLVQDEEPLADIEQ 547 (1666)
T ss_pred HHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCC-ccH---HHHHHHHHc-c-ChhHHHHHHHHhhccCCCcccHHH
Confidence 34555555555544444432 3455666 443 234444444 2 68888877777764 44556777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHh
Q 002772 151 MIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVS-VALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAK 229 (882)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~ 229 (882)
++..+........+..++-...+ +-.|+..-..+ +|. -.+..|-++-+.++..+....+-+-.+.+.+.+
T Consensus 548 I~DlFme~N~iQq~TSFLLdaLK-~~~Pd~g~LQTrLLE--------~NL~~aPqVADAILgN~mFtHyDra~IAqLCEK 618 (1666)
T KOG0985|consen 548 IVDLFMELNLIQQCTSFLLDALK-LNSPDEGHLQTRLLE--------MNLVHAPQVADAILGNDMFTHYDRAEIAQLCEK 618 (1666)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhc-CCChhhhhHHHHHHH--------HHhccchHHHHHHHhccccccccHHHHHHHHHh
Confidence 88888877777777777766654 33454433222 111 122223344444444442222336778888999
Q ss_pred cCChhHHHHHHhcCCC--CCcccHHH----HHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHH
Q 002772 230 LGRVDDAKTLFKSFED--RDLVSWNT----IVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303 (882)
Q Consensus 230 ~g~~~~A~~~f~~m~~--~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 303 (882)
.|-+..|++.|..+.. |.++.-+. -+-.|.-.-.++++++.++.|...+++.|..+...+..-|...-..+.-.
T Consensus 619 AGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li 698 (1666)
T KOG0985|consen 619 AGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALI 698 (1666)
T ss_pred cchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999887763 22221111 12334445578999999999999988888777666666555444444444
Q ss_pred HHHHHHHHhC----------CCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---------------C---------
Q 002772 304 EIHAYALRND----------ILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---------------K--------- 349 (882)
Q Consensus 304 ~~~~~~~~~g----------~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---------------~--------- 349 (882)
++|+...... .+..|..+.-..|.+-|+.|.+.+.+++.++-.-- |
T Consensus 699 ~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCD 778 (1666)
T KOG0985|consen 699 ELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD 778 (1666)
T ss_pred HHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEec
Confidence 4444433211 14667777788899999999999999887653210 1
Q ss_pred ce-ehHHHHHHHhcCCChHHHHHHHHHHHHHcC-----------CCCCcchH-------------hhHHhHhhcCCCCcc
Q 002772 350 IA-LWNAMITGYGQNEYDEEALMLFIKMEEVAG-----------LWPNATTM-------------SSVVPACVRSEAFPD 404 (882)
Q Consensus 350 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-----------~~p~~~t~-------------~~ll~~~~~~~~~~~ 404 (882)
.. .-+.|+- |.-.++..+-+++|-+- ...+ +.-+.... .-+..-+-+.+++..
T Consensus 779 Rf~fVhdlvl-YLyrnn~~kyIE~yVQk-vNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLkl 856 (1666)
T KOG0985|consen 779 RFDFVHDLVL-YLYRNNLQKYIEIYVQK-VNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKL 856 (1666)
T ss_pred ccccHHHHHH-HHHHhhHHHHHHHHHhh-cCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHH
Confidence 00 0111111 11122222222222211 0000 00011111 112222233334444
Q ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHH-------------------------------------------
Q 002772 405 KEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISK------------------------------------------- 441 (882)
Q Consensus 405 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~------------------------------------------- 441 (882)
-...++..+..| ..|..++|+|...|..+++-.+-.
T Consensus 857 Llp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNe 935 (1666)
T KOG0985|consen 857 LLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 935 (1666)
T ss_pred HHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCc
Confidence 444555555555 456677777776665443211110
Q ss_pred ---------------------HHHhh-----------CC------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Q 002772 442 ---------------------TIFDD-----------ME------VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEE 483 (882)
Q Consensus 442 ---------------------~~~~~-----------m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 483 (882)
+++.+ .. ..|+..-+.-+.++...+-+.+-+++++++.-...
T Consensus 936 NSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S 1015 (1666)
T KOG0985|consen 936 NSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1015 (1666)
T ss_pred hhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc
Confidence 01000 00 01222223334445555555555666665543100
Q ss_pred hhhcc-ccccccccccCCCCCcchHhh------------HHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 002772 484 EKNRN-NVYDLDETVLRPKPNSITLMT------------VLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYA 550 (882)
Q Consensus 484 ~~~~~-~~~~~~~~~~~~~p~~~t~~~------------ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 550 (882)
..+.+ +... ......++.|..-... +...+...+.+++|..+|... ..+....+.||+
T Consensus 1016 ~Fse~~nLQn-LLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie--- 1086 (1666)
T KOG0985|consen 1016 VFSENRNLQN-LLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE--- 1086 (1666)
T ss_pred ccccchhhhh-hHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---
Confidence 00000 0000 0000001111111100 111122223334444443321 122222222222
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH
Q 002772 551 KCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 630 (882)
.-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|=+. -|...|..++..+++.|.+++-.
T Consensus 1087 ~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-----------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-----------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 235555565555555443 57999999999999999999887432 35678999999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 002772 631 DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 631 ~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
.++....++ .-+|.++ +.||-+|++.+++.|-++++. .|+.+ -....+.-|...|..+.|...+.
T Consensus 1154 ~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A-~i~~vGdrcf~~~~y~aAkl~y~------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVA-NIQQVGDRCFEEKMYEAAKLLYS------- 1218 (1666)
T ss_pred HHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCch-hHHHHhHHHhhhhhhHHHHHHHH-------
Confidence 999988876 6667655 578999999999999988885 57777 77888999999999998888875
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 711 DVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 711 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+.+.|..|+..+...|.+..|.+.-++.
T Consensus 1219 -~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 -NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566778888888888888887655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-07 Score=100.05 Aligned_cols=491 Identities=13% Similarity=0.050 Sum_probs=273.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHH-------------------HHHHHhhh---hcC--
Q 002772 158 FGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLG-------------------RQVHGNSL---RVG-- 213 (882)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~-------------------~~~~~~~~---~~g-- 213 (882)
.++.+.++.-+..-...+...+..++..+..........++.+.. ....-.+. +.+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555555555666666555554444333444333 11111111 112
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHH
Q 002772 214 EWNTFIMNALMAMYAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVL 290 (882)
Q Consensus 214 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 290 (882)
..|+.+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+-..+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 57888999999999999999999999987654 345679999999999999999999988766544345544433333
Q ss_pred -HHhc-cCCChhHHHHHHHHHHHhCCCC---CchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCC
Q 002772 291 -PACS-HLEMLDTGKEIHAYALRNDILI---DNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEY 365 (882)
Q Consensus 291 -~a~~-~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 365 (882)
+.|. +.+..++|..+-..++...... .....+-.+.-+|...- ....++.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHHH
Confidence 3343 4566677766666665522001 11112222222221110 00000000 0011
Q ss_pred hHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHh
Q 002772 366 DEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFD 445 (882)
Q Consensus 366 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 445 (882)
-.++++.+++..+..+-.|+...|.++- ++-.++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2456666666644444555554444443 33445666666666666666555566666666666666666666666555
Q ss_pred hCCCCCeeeHH---HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHH
Q 002772 446 DMEVRDTVSWN---TMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAK 522 (882)
Q Consensus 446 ~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~ 522 (882)
.....-...++ .-|..-..-++.++|+.....+.. -
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~---~-------------------------------------- 576 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA---L-------------------------------------- 576 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH---H--------------------------------------
Confidence 43311111111 111111123444555554444443 0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCh-hhHHHHHHHHHccCChhHHHHHHHHH
Q 002772 523 GKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNV-ITWNVIIMAYGMHGEGQEVLELLKNM 596 (882)
Q Consensus 523 a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 596 (882)
|+. ..| ....|+-....+.+..+. ..|. .++..+.. ... -+.+.+..-.. |
T Consensus 577 ----we~--~~~--------------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 577 ----WEA--EYG--------------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-L 633 (799)
T ss_pred ----HHh--hhh--------------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-c
Confidence 000 000 000111112233333322 1111 12221111 111 01000000000 1
Q ss_pred HHcCCCCCcccCCh--------hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHH
Q 002772 597 VAEGSRGGEVKPNE--------VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQ 667 (882)
Q Consensus 597 ~~~g~~~~~~~pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~ 667 (882)
...- +.|+. ..|......+...+..++|...+.+... +.| ....|.-....+...|.++||.+
T Consensus 634 p~s~-----~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 634 PSST-----VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred Cccc-----ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1111 22322 1234455667788888899888777764 334 45667777788889999999998
Q ss_pred HHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHH--HHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 668 LINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEI--AAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 668 ~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.|... ..+|+.+.+..++...+...|+...++. +...+++++|.++.+|..|+.++-+.|+.++|.+.|...-+.
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77654 6789988899999999999999888888 999999999999999999999999999999999999876543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-06 Score=92.19 Aligned_cols=308 Identities=13% Similarity=0.117 Sum_probs=182.8
Q ss_pred ChhHHhHHHHHHHhcCCCHHHHHHHHhccCC-----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 002772 112 SVTVANTLVNMYGKCGSDMWDVYKVFDRITE-----KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSV 186 (882)
Q Consensus 112 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 186 (882)
-+.+|-.-+....+.| ++...+..|++... .....|...+.-....|-++-++.+|++-++- .|.. -.--
T Consensus 101 mpRIwl~Ylq~l~~Q~-~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQG-LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHH
Confidence 3456777778888889 99999999987432 24567999999888999999999999998763 3332 3334
Q ss_pred HHHhccCCcccchHHHHHHHHhhhhc-------CCCchhHHHHHHHHHHhcCChh---HHHHHHhcCCCC--C--cccHH
Q 002772 187 ALACSNLSRRDGLRLGRQVHGNSLRV-------GEWNTFIMNALMAMYAKLGRVD---DAKTLFKSFEDR--D--LVSWN 252 (882)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~m~~~--~--~~~~~ 252 (882)
+.-++.. +.+.++.+.++.++.. |..+...|.-+-+..++.-+.- ....+++.+..+ | ...|+
T Consensus 176 ie~L~~~---d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 176 IEYLAKS---DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHhc---cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 4444555 7778877777766533 3677778888777777654322 334455555542 3 34799
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHH-HhCCCCCchhHHHHHHHHhhc
Q 002772 253 TIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYAL-RNDILIDNSFVGSALVDMYCN 331 (882)
Q Consensus 253 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~~Li~~y~~ 331 (882)
+|..-|.+.|.+++|.++|++-... ..+..-|+.+..+|+.......+..+- ... +.+ -+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~-n~ed~------------ 316 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESG-NEEDD------------ 316 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhccc-Chhhh------------
Confidence 9999999999999999999887664 223445667777776543222222211 011 111 11111
Q ss_pred CCChHHHHHHHhccCCC---------------CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcc------hHh
Q 002772 332 CREVECGRRVFDFISDK---------------KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNAT------TMS 390 (882)
Q Consensus 332 ~g~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~------t~~ 390 (882)
-+++-.+.-|+.+.++ ++..|..-+. +..|+..+-...|.+..+ .+.|-.. .+.
T Consensus 317 -~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 317 -VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWV 391 (835)
T ss_pred -hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHH
Confidence 1122233333333222 3334544443 335667777777777632 2333221 244
Q ss_pred hHHhHhhcCCCCcchhhHHHHHHHhCCCCc---hHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 002772 391 SVVPACVRSEAFPDKEGIHGHAIKLGLGRD---RYVQNALMDMYSRMGRIEISKTIFDDME 448 (882)
Q Consensus 391 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 448 (882)
.+...|-..|+++.|..+|....+..++.- ..+|-.-..+=.+..+++.|+++.+...
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 445555566777777777776666544322 2344444455555556666666665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-08 Score=100.86 Aligned_cols=257 Identities=12% Similarity=0.017 Sum_probs=143.5
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHH
Q 002772 353 WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYS 432 (882)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 432 (882)
.-.-..-+...+++.+..+++.......++.++. +..=|..+...|+...-..+-..+++. .+....+|-++.--|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~--~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPC--LPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch--HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 3344445556677788888877774444433333 333344555666655554444444443 3555667777777778
Q ss_pred hcCChHHHHHHHhhCCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhh
Q 002772 433 RMGRIEISKTIFDDMEVRD---TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMT 509 (882)
Q Consensus 433 ~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ 509 (882)
-.|+..+|++.|.....-| ...|-.....|+-.|..+.|+..+...-+ -++-....+.-
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar------------------l~~G~hlP~LY 385 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR------------------LMPGCHLPSLY 385 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH------------------hccCCcchHHH
Confidence 8888888888888765332 34688888888888888888888877754 12222222222
Q ss_pred HHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC------C----ChhhHHHHHHH
Q 002772 510 VLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPV------R----NVITWNVIIMA 579 (882)
Q Consensus 510 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~------~----~~~~~~~li~~ 579 (882)
+---|...++++.|.+.+.++.... +.|+.+.+-+.-+....+.+.+|...|+.... + -..+|+.|..+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 3334555566666666665554432 33555555555555555556666655554330 0 12234444555
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 580 YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
|.+.+++++|+..|++.+... +-|..|+.++.-.+...|.++.|.+.|.+..
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 555555555555555555432 2234444444444555555555555555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-09 Score=111.54 Aligned_cols=237 Identities=19% Similarity=0.167 Sum_probs=177.5
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHh-----cC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhCC----------
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRN-----ML-ATDVV-VGSALVDMYAKCGCLNFARRVFDLMP---------- 566 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~-~~~~~-~~~~li~~y~k~g~~~~A~~~~~~m~---------- 566 (882)
..|+..+...|...|+++.|...+...++. |. .|.+. ..+.+...|...+++++|..+|+++.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667888999999999999999988764 21 22222 33457789999999999999998875
Q ss_pred CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-CCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 002772 567 VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSR-GGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYG-- 641 (882)
Q Consensus 567 ~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 641 (882)
.| -..+++.|..+|.+.|++++|..++++..+--.. .+...|... -++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2467888888999999999999888887652100 000223332 466677789999999999999998877654
Q ss_pred CCCC----hhHHHHHHHHhhccCCHHHHHHHHHhCC---------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 002772 642 IEPS----PDHYACVVDLLGRAGKVEDAYQLINMMP---------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL 708 (882)
Q Consensus 642 ~~p~----~~~~~~li~~l~r~g~~~eA~~~~~~m~---------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l 708 (882)
..++ ..+|+.|..+|-..|+++||.+++++.- ..+......+.|..+|...++.+.|...|+....+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4679999999999999999999998761 12332336788899998889999898888876653
Q ss_pred ----CCC---CCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 709 ----EPD---VASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 709 ----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.|+ ...+|..|+-+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 44567789999999999999999887753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-07 Score=95.02 Aligned_cols=431 Identities=12% Similarity=0.110 Sum_probs=242.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHH--HHHHhh--
Q 002772 255 VSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSA--LVDMYC-- 330 (882)
Q Consensus 255 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~--Li~~y~-- 330 (882)
++-+.++|++++|+.....+...+ +-|...+..=+-+..+.+.++.|..+.. +.+ -..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~----~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNG----ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc----hhhhcchhhHHHHHHHH
Confidence 334455666666666666666543 2233345555555556666666653322 111 0111111 345555
Q ss_pred cCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-CCcchHhhHHhHhhcCCCCcchhhHH
Q 002772 331 NCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW-PNATTMSSVVPACVRSEAFPDKEGIH 409 (882)
Q Consensus 331 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~ 409 (882)
+.+..++|...++.....+..+...-...+.+.|++++|+++|+.+ ...+.. -|...-..++.+-... .+
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a~l----~~---- 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAAAL----QV---- 161 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhh----hH----
Confidence 5678888888887555555445555666778888899999998888 333322 1222222222221110 00
Q ss_pred HHHHHhCCCCchHHHHHH---HHHHHhcCChHHHHHHHhhC--------CCCCee----------eHHHHHHHHHhcCCH
Q 002772 410 GHAIKLGLGRDRYVQNAL---MDMYSRMGRIEISKTIFDDM--------EVRDTV----------SWNTMITGYTICGQH 468 (882)
Q Consensus 410 ~~~~~~g~~~~~~~~~~L---i~~y~~~g~~~~A~~~~~~m--------~~~~~~----------~~~~li~~~~~~g~~ 468 (882)
..+......| ..+|..+ .-.+...|++.+|+++++.. ...|.. .---|...+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111122222 2233333 23456788999999888876 111111 112244567789999
Q ss_pred HHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHH---hhcCcchHHH--------------HHHHHHHHH
Q 002772 469 GDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLP---GCGALSALAK--------------GKEIHAYAI 531 (882)
Q Consensus 469 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~---a~~~~~~~~~--------------a~~i~~~~~ 531 (882)
++|..++...+. .-.+|........+ +...-.++-. +......+.
T Consensus 241 ~ea~~iy~~~i~------------------~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 241 AEASSIYVDIIK------------------RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHH------------------hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999987 44555533222211 1111111111 001111111
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHc-cCChhHHHHHHHHHHHcCCCCCcccC
Q 002772 532 RNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGM-HGEGQEVLELLKNMVAEGSRGGEVKP 608 (882)
Q Consensus 532 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~~~~~~p 608 (882)
....-....-+.|+.+|. +..+.+.++-...+ .|....-+-+..++.. ...+.+|.+++...-+.. |
T Consensus 303 -~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-------p 372 (652)
T KOG2376|consen 303 -KKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-------P 372 (652)
T ss_pred -HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-------C
Confidence 111112334455666665 56677777777776 3333333333333322 235788888888876643 5
Q ss_pred Ch--hHHHHHHHHHhccCCHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-------
Q 002772 609 NE--VTFIALFAACSHSGMVSEGMDLFY--------KMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM------- 671 (882)
Q Consensus 609 d~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~------- 671 (882)
.. +.....+.-....|+++.|.+++. ...+. +. .+.+...++.++.+.+.-+-|..++.+
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 54 344445556788999999999998 55432 33 345567788888888776555555443
Q ss_pred -CCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 672 -MPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 672 -m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
++..+.-...|.-+...-.++|+.+.|...++++++.+|.+....+.+.-.|+...- +.|..+
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~-eka~~l 513 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP-EKAESL 513 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH-HHHHHH
Confidence 233333332455555556678999999999999999999999999999999987653 555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-06 Score=88.90 Aligned_cols=527 Identities=14% Similarity=0.145 Sum_probs=254.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCc-cHHHHH-------------HHHhcCCCchhHHHHHHHHH-------HhcCC
Q 002772 51 SEARSNQFREAILSYIEMTRSDIQPDNF-AFPAVL-------------KAVAGIQDLSLGKQIHAHVV-------KYGYG 109 (882)
Q Consensus 51 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll-------------~~~~~~~~~~~a~~~~~~~~-------~~~~~ 109 (882)
+....|++..|..+++.... .|+.. .|..+- ++++..|++..++.+|+-.. +.|-.
T Consensus 453 aaid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred cccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 34567888888887776432 34443 244443 33444455555555555331 11221
Q ss_pred CCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002772 110 LSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189 (882)
Q Consensus 110 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 189 (882)
..+-+-..+++.+..+ .+..|+.+|-+-. .-...|..|....+|++|+.+-+.. |.+.-...-.+-+++
T Consensus 530 gt~fykvra~lail~k---kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 530 GTDFYKVRAMLAILEK---KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQA 598 (1636)
T ss_pred CchHHHHHHHHHHHHh---hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHH
Confidence 1233333455555554 7788888774321 1123455566666677776655432 111101111112222
Q ss_pred hccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCC--CCCcccHHHHHHHHHcCCChHHH
Q 002772 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFE--DRDLVSWNTIVSSLSQNDKFLEA 267 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A 267 (882)
+... +.-+.+-++ + .++-. .-+-|..|.+.|..-+|.+.-..-. ..|......+..++.+..-+++|
T Consensus 599 l~dt---~qd~ka~el-----k--~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 599 LMDT---GQDEKAAEL-----K--ESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHhc---Cchhhhhhh-----c--cccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhh
Confidence 2222 111111100 0 11111 2355778888888887776543221 23555555566666666677777
Q ss_pred HHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHhhcCCChHHHHHHHhccC
Q 002772 268 VMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFV-GSALVDMYCNCREVECGRRVFDFIS 346 (882)
Q Consensus 268 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~ 346 (882)
-++|+.+.. |--.+..+.+-.-+.+|.++-+.. +|..+.. -....+.+...|+++.|..-|-+..
T Consensus 668 gdlfeki~d---------~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 668 GDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 777776643 122233333322333343333322 2222111 1112222223333333333332210
Q ss_pred CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHH
Q 002772 347 DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNA 426 (882)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 426 (882)
..-..|.+......+.+|+.+++.+ .... .....|..
T Consensus 734 -----~~~kaieaai~akew~kai~ildni------------------------------------qdqk--~~s~yy~~ 770 (1636)
T KOG3616|consen 734 -----CLIKAIEAAIGAKEWKKAISILDNI------------------------------------QDQK--TASGYYGE 770 (1636)
T ss_pred -----hHHHHHHHHhhhhhhhhhHhHHHHh------------------------------------hhhc--cccccchH
Confidence 0111122233334444444444444 3221 11122344
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT 506 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t 506 (882)
+.+-|+..|+++.|.++|-+.. .++--|..|.++|+++.|.++-.+... |.
T Consensus 771 iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~---------------------~e--- 821 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG---------------------PE--- 821 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC---------------------ch---
Confidence 4555666666666666665432 244455666666666666665554422 11
Q ss_pred HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCCh
Q 002772 507 LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEG 586 (882)
Q Consensus 507 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 586 (882)
.....|-+-..-+-+.|++.+|++++-.+..|+.. |..|-++|..
T Consensus 822 ------------------------------~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ 866 (1636)
T KOG3616|consen 822 ------------------------------ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLD 866 (1636)
T ss_pred ------------------------------hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcc
Confidence 11222323333344567777777777666666643 5667777777
Q ss_pred hHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHH
Q 002772 587 QEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVED 664 (882)
Q Consensus 587 ~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~e 664 (882)
+..+.+.++ ..|| ..|...+..-+...|++.+|.+-|-+... |.+-+++|-..+.+++
T Consensus 867 ddmirlv~k----------~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 867 DDMIRLVEK----------HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWED 926 (1636)
T ss_pred hHHHHHHHH----------hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHH
Confidence 777666654 2344 34555566666677777777766655432 5556677777777777
Q ss_pred HHHHHHhCC---CCCCchhhHHHHH------HHHHhcCchhHHHHH------HHHHhc-----CCCCCCchHHHHHHHHH
Q 002772 665 AYQLINMMP---PEFDKAGAWSSLL------GACRIHQNVEIGEIA------AQNLFL-----LEPDVASHYVLLSNIYS 724 (882)
Q Consensus 665 A~~~~~~m~---~~p~~~~~~~~ll------~a~~~~~~~~~a~~~------~~~~~~-----l~p~~~~~~~~l~~~y~ 724 (882)
|..+-+.-. .+......|.--+ ..+-+||-++.|... |+-+++ ....-+..++-++..+.
T Consensus 927 ayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~le 1006 (1636)
T KOG3616|consen 927 AYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLE 1006 (1636)
T ss_pred HHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhh
Confidence 777665421 0111111232111 122344444443332 222222 22344667888888999
Q ss_pred HcCCchHHHHHHHHHHhCC
Q 002772 725 SAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 725 ~~g~~~~a~~~~~~m~~~g 743 (882)
..|++++|.+-+-+..+.+
T Consensus 1007 degk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hccchhhhhHhhHHHhhcc
Confidence 9999999987776655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=102.71 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=164.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCC
Q 002772 425 NALMDMYSRMGRIEISKTIFDDME--VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKP 502 (882)
Q Consensus 425 ~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p 502 (882)
+-+..+|.+.|.+.+|.+.|+... .+-+.||-.|-..|.+.++++.|+.+|.+-++ ..|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld-------------------~fP 287 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD-------------------SFP 287 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh-------------------cCC
Confidence 446667777777777777777654 34555666677777777777777777777664 234
Q ss_pred CcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHH
Q 002772 503 NSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMA 579 (882)
Q Consensus 503 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 579 (882)
-.+|| ..-....+...++.++|.++++... .-|+.+..++..+
T Consensus 288 ~~VT~----------------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 288 FDVTY----------------------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred chhhh----------------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 44443 2223344555566777777777655 3355555566667
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc
Q 002772 580 YGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA 659 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~ 659 (882)
|--.|+++.|+.+|+++++.| .-+...|+.+.-+|...+++|-++.-|++....
T Consensus 334 yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-------------------- 387 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALST-------------------- 387 (478)
T ss_pred cccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--------------------
Confidence 777788888888888888887 345666777777777777777777777666542
Q ss_pred CCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 660 GKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 660 g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
|..+....++|..|.......||+..|.+.++.++.-+|++...++.|+-+-.+.|+.++|..+++..
T Consensus 388 ------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 388 ------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred ------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 11112223389999988899999999999999999999999999999999999999999999999987
Q ss_pred HhCC
Q 002772 740 KEMG 743 (882)
Q Consensus 740 ~~~g 743 (882)
+...
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-08 Score=104.38 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=155.5
Q ss_pred chHHHHHHHHHHHHHhc-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHH
Q 002772 518 SALAKGKEIHAYAIRNM-LAT--DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLE 591 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 591 (882)
+..+.+..-+..++... ..| ....|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 222 24567788889999999999999999876 4467899999999999999999999
Q ss_pred HHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH
Q 002772 592 LLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 592 l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
.|++.++ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.++
T Consensus 120 ~~~~Al~-------l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 120 AFDSVLE-------LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999998 4576 567888888899999999999999999864 5554322333334556788999999996
Q ss_pred hCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh-------cCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 671 MMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF-------LLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 671 ~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+....-+.. .|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 190 ~~~~~~~~~-~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 190 QRYEKLDKE-QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHhhCCcc-ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 542111112 4442 2233335555443 2344333 5567778899999999999999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-07 Score=96.12 Aligned_cols=338 Identities=11% Similarity=-0.045 Sum_probs=162.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhH-HHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHH
Q 002772 150 SMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTL-VSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYA 228 (882)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~ 228 (882)
..-.-|.++|++++|++.|....+ ..||..+| ...-.++... ++++...+--...+...+.-+..+..-..++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~l---gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESL---GDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHH---hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 444556778889999999988876 46774444 4444445556 77777777766666665556666777777788
Q ss_pred hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHH---------HHHC--CCCCChhhHhhHHHHhccCC
Q 002772 229 KLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQ---------MALR--GIKPDGVSIASVLPACSHLE 297 (882)
Q Consensus 229 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~~--g~~pd~~t~~~ll~a~~~~~ 297 (882)
..|++++|+.= +|-.++..++..+.-.--+.+++.. |.+. .+.|......+.+..+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88888877642 2333344444333322222333322 1211 23455444444433332100
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcC-CChHHHHHHHhcc-------CCCC---c------eehHHHHHHH
Q 002772 298 MLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNC-REVECGRRVFDFI-------SDKK---I------ALWNAMITGY 360 (882)
Q Consensus 298 ~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m-------~~~~---~------~~~~~li~~~ 360 (882)
.. ..+.+ + -..|...-..+=..|.+. ..+..|...+.+- ...+ . .+.+.--.-+
T Consensus 266 ~~-------~~~~~-~-~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 KP-------LFDNK-S-DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred cc-------cccCC-C-ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 00 00000 0 001111111111111110 1122222222111 1111 0 0111111122
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCCCcch-HhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHH
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPNATT-MSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEI 439 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 439 (882)
.-.|+..+|...|+.. . ...|.... |.-+...+....+.++..+.|..+.+.. +-++.+|---..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~-I--~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAA-I--KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHH-H--hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3346666666666666 2 12222222 4455555666666666666666666554 3344555555555566666666
Q ss_pred HHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcC
Q 002772 440 SKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 440 A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
|..=|+....- ++..|--+-.+.-+.+++++++..|++..+ ..+.-...|+..-..+..
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk------------------kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK------------------KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hCCCCchHHHHHHHHHhh
Confidence 66666665522 233333343444455566666666666665 344444445555555555
Q ss_pred cchHHHHHHHHHHHHH
Q 002772 517 LSALAKGKEIHAYAIR 532 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~ 532 (882)
.++++.|.+.++..++
T Consensus 475 qqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 5555555555555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-07 Score=91.30 Aligned_cols=310 Identities=14% Similarity=0.141 Sum_probs=172.1
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCc-chHhhHHhHhhcCCCCcchhhHHHHHHHhC-CCCc--hHHHHHHHHHHHhcCCh
Q 002772 362 QNEYDEEALMLFIKMEEVAGLWPNA-TTMSSVVPACVRSEAFPDKEGIHGHAIKLG-LGRD--RYVQNALMDMYSRMGRI 437 (882)
Q Consensus 362 ~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~~~g~~ 437 (882)
-+.+.++|.++|-+|.+ ..|.. .+-.++-+.+-+.|..+.|+.+|..+.++. +..+ ....-.|..=|.+.|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 36778888888888822 22222 223344455555666666666666655432 1111 12223344445555555
Q ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCc
Q 002772 438 EISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGAL 517 (882)
Q Consensus 438 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~ 517 (882)
|.|+.+|..+.+.+...-++ .--++..|-..
T Consensus 124 DRAE~~f~~L~de~efa~~A-------------------------------------------------lqqLl~IYQ~t 154 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGA-------------------------------------------------LQQLLNIYQAT 154 (389)
T ss_pred hHHHHHHHHHhcchhhhHHH-------------------------------------------------HHHHHHHHHHh
Confidence 55555555444433333333 33334444444
Q ss_pred chHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHccCChhHHH
Q 002772 518 SALAKGKEIHAYAIRNMLATD----VVVGSALVDMYAKCGCLNFARRVFDLMPV---RNVITWNVIIMAYGMHGEGQEVL 590 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 590 (882)
.++++|.++-..+.+.+-.+. ...|.-|...+.-..+.+.|..++.+..+ ..+..--.+...+...|+++.|+
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence 444444444444444332221 12344455555566777778888777652 23333334556677888888888
Q ss_pred HHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHH
Q 002772 591 ELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQL 668 (882)
Q Consensus 591 ~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~ 668 (882)
+.++...+.+ |+ ..+...|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.++|...
T Consensus 235 ~~~e~v~eQn-------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 235 EALERVLEQN-------PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred HHHHHHHHhC-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHH
Confidence 8888888865 55 345667777888888888888888887754 34444444444444433334444443
Q ss_pred H-HhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 002772 669 I-NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKE 747 (882)
Q Consensus 669 ~-~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~ 747 (882)
+ +...-+|+.. ....|+..- -. =++.|+|.+.+.+++.|....++..
T Consensus 305 l~~Ql~r~Pt~~-gf~rl~~~~--------------------l~-----------daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 305 LTRQLRRKPTMR-GFHRLMDYH--------------------LA-----------DAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHHhhCCcHH-HHHHHHHhh--------------------hc-----------cccccchhhhHHHHHHHHHHHHhhc
Confidence 3 3344455544 333332221 11 1234678888888999988888888
Q ss_pred CceeEEEeCCEEEEEEeC
Q 002772 748 PGCSWIEFGDEIHKFLAG 765 (882)
Q Consensus 748 ~~~s~i~~~~~~~~f~~~ 765 (882)
|.+.--.-+-+.|.|..-
T Consensus 353 ~~YRC~~CGF~a~~l~W~ 370 (389)
T COG2956 353 PRYRCQNCGFTAHTLYWH 370 (389)
T ss_pred CCceecccCCcceeeeee
Confidence 876655555556666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-07 Score=93.11 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=176.7
Q ss_pred CCChHHHHHHHhccCCCCceeh---HHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcc--hHhhHHhHhhcCCCCcchh
Q 002772 332 CREVECGRRVFDFISDKKIALW---NAMITGYGQNEYDEEALMLFIKMEEVAGLWPNAT--TMSSVVPACVRSEAFPDKE 406 (882)
Q Consensus 332 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 406 (882)
..+.++|.++|-+|.+.|..++ -+|-+.|-+.|..+.|+.+-+.+....+..-+.. ..-.+..-|-..|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4789999999999998776654 4577889999999999999988833222222211 2233445566788999999
Q ss_pred hHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Q 002772 407 GIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKN 486 (882)
Q Consensus 407 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 486 (882)
++|..+++.| ..-.....-|+..|-+..+|++|.++-++...-+...++.-|.-|
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf------------------------ 182 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF------------------------ 182 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH------------------------
Confidence 9999988755 223334455666666666666666655554443334444433211
Q ss_pred ccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 002772 487 RNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP 566 (882)
Q Consensus 487 ~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~ 566 (882)
|.-+-.......+++.|...+..+.+... ..+...-.+.+.+...|+++.|.+.++.+.
T Consensus 183 --------------------yCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 183 --------------------YCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred --------------------HHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 11111122223445555555555554432 234444556778888888888888888887
Q ss_pred CCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 002772 567 VRNV----ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI 642 (882)
Q Consensus 567 ~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 642 (882)
+.|. .+...|..+|.+.|+.++.+..+.++.+.. ++...-..+-..-....-.+.|..++.+-..+
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--- 311 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-------TGADAELMLADLIELQEGIDAAQAYLTRQLRR--- 311 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---
Confidence 4443 345667788888899888888888888854 44333333333333334455666655555443
Q ss_pred CCChhHHHHHHHHhhc---cCCHHHHHHHHHhC
Q 002772 643 EPSPDHYACVVDLLGR---AGKVEDAYQLINMM 672 (882)
Q Consensus 643 ~p~~~~~~~li~~l~r---~g~~~eA~~~~~~m 672 (882)
+|+...+..+++.-.. -|+..+-+.+++.|
T Consensus 312 ~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 312 KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 6888888888887542 34455555555555
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-08 Score=112.34 Aligned_cols=212 Identities=12% Similarity=0.013 Sum_probs=165.3
Q ss_pred chHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCC
Q 002772 518 SALAKGKEIHAYAIRNMLATDVVVGSALVDMYAK---------CGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGE 585 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k---------~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~ 585 (882)
+++++|.+.+..+++.... +...+..+..+|.. .+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4568899999988875422 34456666655542 345889999999876 4467888888889999999
Q ss_pred hhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHhhccCCHH
Q 002772 586 GQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-DHYACVVDLLGRAGKVE 663 (882)
Q Consensus 586 ~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~l~r~g~~~ 663 (882)
+++|+..|++.++.+ |+ ...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|+++
T Consensus 354 ~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 354 YIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHH
Confidence 999999999999954 66 456777888899999999999999999854 5553 23334455566789999
Q ss_pred HHHHHHHhCC--CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 664 DAYQLINMMP--PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 664 eA~~~~~~m~--~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
+|.+.+++.. ..|+.+..+..+..++...|+.++|+..++++....|++......|+..|...| ++|...++.+.+
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9999998763 246666467778888889999999999999999999998888889999998888 588877777655
Q ss_pred C
Q 002772 742 M 742 (882)
Q Consensus 742 ~ 742 (882)
.
T Consensus 502 ~ 502 (553)
T PRK12370 502 S 502 (553)
T ss_pred H
Confidence 4
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-08 Score=99.85 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=141.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
...+..+...|...|++++|++.|++.++.. |+ ...+..+...+...|++++|.+.+++..+. .+.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~ 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDV 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHH
Confidence 4667788899999999999999999998854 54 567788888899999999999999999864 2345677
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCCC---CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMMPP---EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m~~---~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
+..+...+...|++++|.+.+++... .+.....|..+...+...|+.+.|...++++++..|+++..+..++.+|..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 88889999999999999999988632 233344788888899999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 002772 726 AQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 726 ~g~~~~a~~~~~~m~~~ 742 (882)
.|++++|...+++..+.
T Consensus 182 ~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT 198 (234)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-07 Score=90.87 Aligned_cols=287 Identities=15% Similarity=0.077 Sum_probs=175.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHH
Q 002772 261 NDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRR 340 (882)
Q Consensus 261 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~ 340 (882)
.|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-..+..+.+.. -.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 456666666665554444333 2234444455555666666666666665543 24455555555666666666666655
Q ss_pred HHhcc---CCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCC
Q 002772 341 VFDFI---SDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGL 417 (882)
Q Consensus 341 ~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 417 (882)
-.+.. ..++.........+|.+.|++.+...++.+| .+.++--|+..-
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e~~---------------------------- 225 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEEAA---------------------------- 225 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHHHH----------------------------
Confidence 54433 3345556667777777777777777777777 555544333210
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccc
Q 002772 418 GRDRYVQNALMDMYSRMGRIEISKTIFDDME---VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLD 494 (882)
Q Consensus 418 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 494 (882)
.....+|+.+++-....+..+.-...++..+ ..++..-.+++.-+.+.|+.++|.++..+..+ .
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk---~---------- 292 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK---R---------- 292 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH---h----------
Confidence 0011233444444444444444444555555 22455556677777778888888888777776 3
Q ss_pred ccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhh
Q 002772 495 ETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVIT 572 (882)
Q Consensus 495 ~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~ 572 (882)
+..|+ ...+-.+.+.++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|...|+... .|+..+
T Consensus 293 ----~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 293 ----QWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred ----ccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 44454 223334555566655555555444432 2344778888888999999999999888655 788888
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
|+-+..+|.+.|+..+|.+.+++.+..-
T Consensus 364 ~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 364 YAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 8888899999999998888888877544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=98.89 Aligned_cols=232 Identities=9% Similarity=-0.056 Sum_probs=163.2
Q ss_pred cCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc--chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHH
Q 002772 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS--ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVG 542 (882)
Q Consensus 465 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 542 (882)
.++.+.++.-+.+++... ...|+. ..+......+...|+.+.|...+..+++.. +.+...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~----------------~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 101 (296)
T PRK11189 39 TLQQEVILARLNQILASR----------------DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAY 101 (296)
T ss_pred chHHHHHHHHHHHHHccc----------------cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 356778888888887510 122322 345566667888999999999999998865 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a 619 (882)
+.+...|...|++++|...|++.. .| +..+|..+...+...|++++|++.|++..+.. |+..........
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~~~l 174 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDPYRALWLYL 174 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 999999999999999999999886 34 56788889999999999999999999999854 665422222223
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-CC----CCCCchhhHHHHHHHHHhcCc
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM-MP----PEFDKAGAWSSLLGACRIHQN 694 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~-m~----~~p~~~~~~~~ll~a~~~~~~ 694 (882)
+...++.++|...|.+... ...|+...+ .++..+......+++.+.+.+ .. ..|+...+|..|+..+...|+
T Consensus 175 ~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred HHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4556789999999977654 334433222 333333322222334433332 11 123444589999999999999
Q ss_pred hhHHHHHHHHHhcCCC-CCCchHHHHHHHH
Q 002772 695 VEIGEIAAQNLFLLEP-DVASHYVLLSNIY 723 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y 723 (882)
.+.|...++++++++| +...+-..+..+.
T Consensus 252 ~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 252 LDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 9999999999999997 5444444454443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9e-07 Score=87.48 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=106.4
Q ss_pred CHHHHHHHHhhCC----CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHH
Q 002772 554 CLNFARRVFDLMP----VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSE 628 (882)
Q Consensus 554 ~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~ 628 (882)
.+.-|.+.|+-.- .- .+.--.+|.+.+--..++++++-.++....-- .-|.+--..+..|.+..|.+.+
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF------~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF------TNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchhhhHHHHHHHHhcChHH
Confidence 3556666666543 22 23334566677777778888888888877653 3333333457788888999999
Q ss_pred HHHHHHHhHHhcCCCCChhHH-HHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 629 GMDLFYKMKDDYGIEPSPDHY-ACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 629 a~~~~~~m~~~~~~~p~~~~~-~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
|.++|-.+... .++ +..+| +.|..+|.+.|+.+-|++++-++....+....+.-+.+-|.+.+.+=-|-++|+.+-.
T Consensus 412 aEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 99999877642 333 34444 5567889999999999999998865444442444555779999999999999999888
Q ss_pred CCCC
Q 002772 708 LEPD 711 (882)
Q Consensus 708 l~p~ 711 (882)
++|.
T Consensus 490 lDP~ 493 (557)
T KOG3785|consen 490 LDPT 493 (557)
T ss_pred cCCC
Confidence 8884
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-08 Score=89.69 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=135.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYA 650 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 650 (882)
...|..+|.+.|+...|.+-+++.++.. |+ ..++..+...|.+.|..+.|.+.|++..+ +.| +-++.|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLN 107 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhh
Confidence 4456678888888888888888888854 65 55788888888888888888888888874 345 467788
Q ss_pred HHHHHhhccCCHHHHHHHHHhCCCC---CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC
Q 002772 651 CVVDLLGRAGKVEDAYQLINMMPPE---FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m~~~---p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
...--||..|++++|...|++.... |....+|.++...-.+.|+.+.|+..++++++++|+.+.....+.+...+.|
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG 187 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc
Confidence 8888888889999999888876333 3334478888888889999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 002772 728 LWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 728 ~~~~a~~~~~~m~~~g~ 744 (882)
++-+|.-.++....++.
T Consensus 188 ~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 188 DYAPARLYLERYQQRGG 204 (250)
T ss_pred cchHHHHHHHHHHhccc
Confidence 99999999998887764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-06 Score=90.69 Aligned_cols=490 Identities=15% Similarity=0.134 Sum_probs=275.7
Q ss_pred cCCCHHHHHHHHhccC-CCCce-eHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHH
Q 002772 126 CGSDMWDVYKVFDRIT-EKDQV-SWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGR 203 (882)
Q Consensus 126 ~g~~~~~A~~~f~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 203 (882)
-| +++.|...++... .||.. .|-.+...-...|+.--|.+.|..+ +++..++
T Consensus 457 ~~-df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai-------------------------~dvak~r 510 (1636)
T KOG3616|consen 457 DG-DFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI-------------------------GDVAKAR 510 (1636)
T ss_pred cC-chHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH-------------------------HHHHHHH
Confidence 35 7777877776654 24443 5777766667777777777776654 4444455
Q ss_pred HHHHhhh-------hcC--CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHH
Q 002772 204 QVHGNSL-------RVG--EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQM 274 (882)
Q Consensus 204 ~~~~~~~-------~~g--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 274 (882)
.+|+... ..| ..+-+-..+++.+..+ ++..|..+|-+-.. -...|..|....++++|+.+-+.
T Consensus 511 ~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~- 582 (1636)
T KOG3616|consen 511 FLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA- 582 (1636)
T ss_pred HHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh-
Confidence 5554332 223 3343444455555443 57777777743221 12345555556667777766432
Q ss_pred HHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhcc--CCCCcee
Q 002772 275 ALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFI--SDKKIAL 352 (882)
Q Consensus 275 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m--~~~~~~~ 352 (882)
.|.+.=...-.+-++++...|+-+.|-++- ..| .-.-+-|..|.|.|.+.+|.+.-..- ...|...
T Consensus 583 --~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sd-gd~laaiqlyika~~p~~a~~~a~n~~~l~~de~i 650 (1636)
T KOG3616|consen 583 --KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESD-GDGLAAIQLYIKAGKPAKAARAALNDEELLADEEI 650 (1636)
T ss_pred --cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------ccc-CccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHH
Confidence 222211222344556666666665554431 111 12245678899999988887654321 1234445
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHH-HHHHHHHH
Q 002772 353 WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYV-QNALMDMY 431 (882)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y 431 (882)
...+..++.+..-+++|-++|+++ . .+...+..+-+...+-.|.++-... ++..++. -..-.+-+
T Consensus 651 l~~ia~alik~elydkagdlfeki-~---------d~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl 716 (1636)
T KOG3616|consen 651 LEHIAAALIKGELYDKAGDLFEKI-H---------DFDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHL 716 (1636)
T ss_pred HHHHHHHHHhhHHHHhhhhHHHHh-h---------CHHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHH
Confidence 566667777777788888888887 2 1222333333333344444443322 2222211 12233445
Q ss_pred HhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHH
Q 002772 432 SRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVL 511 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll 511 (882)
...|+++.|..-|-+... .-.-|.+-....++.+|+.+++.++. + +.-..-|.-+.
T Consensus 717 ~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd---q----------------k~~s~yy~~ia 772 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD---Q----------------KTASGYYGEIA 772 (1636)
T ss_pred HHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh---h----------------ccccccchHHH
Confidence 566777777776655421 11234455566778888888887765 2 22333455666
Q ss_pred HhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHccCChhHH
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR--NVITWNVIIMAYGMHGEGQEV 589 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A 589 (882)
+.|++.|+++.|.+++... ..++--|+||.+.|++++|.++-.+...| .+..|-+-..-+-.+|++.+|
T Consensus 773 dhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh
Confidence 7788888888888877542 23445678888888888888887776644 344555556667778888888
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 590 LELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
.++|-.. -.|+. .|..|-+.|..++.+.+.++-..+ .-.++...+..-|-..|++.+|.+-|
T Consensus 844 eqlyiti---------~~p~~-----aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 844 EQLYITI---------GEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hheeEEc---------cCchH-----HHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 8777443 23553 245566777777776666543211 11233444566667778888887766
Q ss_pred HhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 670 NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 670 ~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
-+.. -|.+-.+.|+..+-.+.|-++++ .-.-.+..-.+...|.-+--| +.|.+++++
T Consensus 906 lea~-------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 906 LEAG-------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred Hhhh-------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 6543 56666666666655555544433 222233333444444433333 566666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-06 Score=88.26 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=64.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHH
Q 002772 363 NEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKT 442 (882)
Q Consensus 363 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 442 (882)
.|++.+|.++..+- ...+-.| ...|.....+....|+.+.+-.++.++.+.--.++..++-+........|+++.|+.
T Consensus 97 eG~~~qAEkl~~rn-ae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRN-AEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHh-hhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 57777777777665 3333222 223444445555566666666666666655434555555555555556666665555
Q ss_pred HHhhCC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 443 IFDDME---VRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 443 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
-.++.. ..+..........|.+.|++.+.+.++.+|.+
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444332 33444455555555555555555555555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=103.54 Aligned_cols=239 Identities=18% Similarity=0.140 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCCC----------Cee-eHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccc
Q 002772 422 YVQNALMDMYSRMGRIEISKTIFDDMEVR----------DTV-SWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNV 490 (882)
Q Consensus 422 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 490 (882)
.+..-|..+|...|+++.|..+++...+. .+. ..+.+...|...+++++|..+|.+++.....
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~------ 273 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE------ 273 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------
Confidence 34444666666666666666666554311 111 1234556777888888888888888762211
Q ss_pred ccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----
Q 002772 491 YDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---- 566 (882)
Q Consensus 491 ~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---- 566 (882)
..-++... -..+++.|...|.+.|++++|...+++..
T Consensus 274 --------~~G~~h~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 274 --------VFGEDHPA-------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred --------hcCCCCHH-------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 11122211 23355566667777777777666655432
Q ss_pred ------CCChh-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh----hHHHHHHHHHhccCCHHHHHHHHHH
Q 002772 567 ------VRNVI-TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE----VTFIALFAACSHSGMVSEGMDLFYK 635 (882)
Q Consensus 567 ------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~ 635 (882)
.+.+. -++.++..|...+++++|..++++..+.-. .-..++. -+++.|...|-+.|++++|.++|++
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~--~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL--DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 23333 345667778888999999999887765310 0022333 4788999999999999999999999
Q ss_pred hHHhc----C-CCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC--------CCCCCchhhHHHHHHHHHhcCchhHHHHH
Q 002772 636 MKDDY----G-IEP-SPDHYACVVDLLGRAGKVEDAYQLINMM--------PPEFDKAGAWSSLLGACRIHQNVEIGEIA 701 (882)
Q Consensus 636 m~~~~----~-~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m--------~~~p~~~~~~~~ll~a~~~~~~~~~a~~~ 701 (882)
+.... | ..+ ...+++.|...|.+.++..+|.++|.+. +..|+....+..|...|...|++|.|+++
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 87652 1 122 2456788888899999999888888754 45667666899999999999999999999
Q ss_pred HHHHhc
Q 002772 702 AQNLFL 707 (882)
Q Consensus 702 ~~~~~~ 707 (882)
.++++.
T Consensus 473 ~~~~~~ 478 (508)
T KOG1840|consen 473 EEKVLN 478 (508)
T ss_pred HHHHHH
Confidence 887763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=89.76 Aligned_cols=610 Identities=10% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHH
Q 002772 45 WIESLRSEARSNQFREAILSYIEMTRS---DIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVN 121 (882)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 121 (882)
|-.+...|.++|....|++.|.++.+- -+..+.-.-.-++. +...-.++...+.+..|...++. .+..+.-.+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~Nir-qNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIR-QNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 777788899999999999888876442 12222222222333 33334677777888888888777 77777666666
Q ss_pred HHHhcCCCHHHHHHHHhccCC---------------CCceeHHHHHHHHHhcCCchHHHHHHHHHH------------HC
Q 002772 122 MYGKCGSDMWDVYKVFDRITE---------------KDQVSWNSMIATLCRFGKWDLALEAFRMML------------YS 174 (882)
Q Consensus 122 ~y~~~g~~~~~A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------~~ 174 (882)
-|...- ..+..+++|+.... .|....-..|.+-|+.|++.+..++.++-. +.
T Consensus 687 ky~eql-g~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 687 KYHEQL-GAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHh-CHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 776655 56777777776542 244455577899999999988887765421 11
Q ss_pred ---CCCC-----ChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCC
Q 002772 175 ---NVEP-----SSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFED 245 (882)
Q Consensus 175 ---g~~p-----~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 245 (882)
.-.| |.+.|..=|-.+-.. .+...-.+++ +.+.. ...+.+...|++.=+ -++..+-+ -|.-
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyr---nn~~kyIE~y--VQkvNps~~p~VvG~LLD~dC----~E~~ik~L-i~~v 835 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYR---NNLQKYIEIY--VQKVNPSRTPQVVGALLDVDC----SEDFIKNL-ILSV 835 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHH---hhHHHHHHHH--HhhcCCcccchhhhhhhcCCC----cHHHHHHH-HHHH
Confidence 1111 111111111111110 1111111111 11111 111122222221110 01111100 0001
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHH----------HHHHHHHHHh---
Q 002772 246 RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTG----------KEIHAYALRN--- 312 (882)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a----------~~~~~~~~~~--- 312 (882)
+..+.-+.|+.-.-+.++..--+..++.....|.. |..|++++.+.|...++-.+- +.+=....+.
T Consensus 836 ~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 836 RGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred hccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCc
Confidence 22334444555555566666666677777777754 777788887777665442221 0111111110
Q ss_pred --------CC-------CCCchhHHHHHHHHhhcCCChHHHHHHHhc-----------c-----C-CCCceehHHHHHHH
Q 002772 313 --------DI-------LIDNSFVGSALVDMYCNCREVECGRRVFDF-----------I-----S-DKKIALWNAMITGY 360 (882)
Q Consensus 313 --------g~-------~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-----------m-----~-~~~~~~~~~li~~~ 360 (882)
|. +-.....+..+.....+..+.+.=.+++.+ . + ..|+.--+.-+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 00 000111122222222223332222222211 0 0 02333455566777
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCCCcchH-hhHHhHhhcCCCCcchhhHHHHHHHh-----------------------C
Q 002772 361 GQNEYDEEALMLFIKMEEVAGLWPNATTM-SSVVPACVRSEAFPDKEGIHGHAIKL-----------------------G 416 (882)
Q Consensus 361 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------g 416 (882)
...+-+.+-+++++++......-.....+ +.++-...+ .+.....++...+-.. .
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH
Confidence 77777888888887773322211111111 112211111 1111111111111111 0
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccc
Q 002772 417 LGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDET 496 (882)
Q Consensus 417 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (882)
+..+....+.||. .-+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1074 f~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------------------ 1130 (1666)
T KOG0985|consen 1074 FDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------------------ 1130 (1666)
T ss_pred hcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------------------
Confidence 1122222222221 123344444444433332 34666666666666666666554432
Q ss_pred ccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH
Q 002772 497 VLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVI 576 (882)
Q Consensus 497 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l 576 (882)
-|+..|.-+++++.+.|.+++-...+..+.+..-.|. +-+.||-+|+|.+++.+-++.. ..||+.-...+
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI---AGPNVANIQQV 1200 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh---cCCCchhHHHH
Confidence 2344566666666666666666666666655544433 3345666666666665554443 23454444455
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 577 IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 577 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
..-|-..|.++.|.-+|.. ...|..|...+.+.|.+..|...-++. .+..+|.-+-.++
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~--------------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN--------------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHH
Confidence 5555555555555444432 223444555555555555544433222 2334455454555
Q ss_pred hccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHc
Q 002772 657 GRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA 726 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 726 (882)
...+.+.-|. +....+--... -+.-|+..|...|-+++-...++..+.++--.-+.+..|+-+|++-
T Consensus 1260 vd~~EFrlAQ--iCGL~iivhad-eLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1260 VDKEEFRLAQ--ICGLNIIVHAD-ELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hchhhhhHHH--hcCceEEEehH-hHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 4444333221 00110000011 3455666666667777777777777777766667777777777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-05 Score=79.29 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=75.6
Q ss_pred cCChhHHHHHHhcCCC--CCcccHHHHH-HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccC--CChhHHHH
Q 002772 230 LGRVDDAKTLFKSFED--RDLVSWNTIV-SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHL--EMLDTGKE 304 (882)
Q Consensus 230 ~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~ 304 (882)
.-.+++|++++..+.. |+....|.-+ -+|.+..-++-+.+++.--++. -||+ |+..-|.+|... =.-..+++
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHH
Confidence 3456788888877654 4444555433 3556666677777777666553 3443 344444454322 12222333
Q ss_pred HHHHHHHhCCCCCchhHHHHHHH-HhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCC
Q 002772 305 IHAYALRNDILIDNSFVGSALVD-MYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLW 383 (882)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~Li~-~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 383 (882)
-...+..++ ...-....-|+. -+.-...-+.|.+++-.+...=+.+--.++--|.+++++.+|..+.+++ ....
T Consensus 241 E~k~ladN~--~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~Ptt 315 (557)
T KOG3785|consen 241 EKKELADNI--DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTT 315 (557)
T ss_pred HHHHHHhcc--cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCC
Confidence 333333333 111001111111 1111223345555544333222223334555678888899998888777 4555
Q ss_pred CCcchHhhH
Q 002772 384 PNATTMSSV 392 (882)
Q Consensus 384 p~~~t~~~l 392 (882)
|-.+..-.+
T Consensus 316 P~EyilKgv 324 (557)
T KOG3785|consen 316 PYEYILKGV 324 (557)
T ss_pred hHHHHHHHH
Confidence 555444333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-06 Score=82.48 Aligned_cols=405 Identities=9% Similarity=-0.027 Sum_probs=243.4
Q ss_pred CchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHH-HhcCC-ChHHHHHHHHHHHHHcCCCCCcchHhhHHh
Q 002772 317 DNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITG-YGQNE-YDEEALMLFIKMEEVAGLWPNATTMSSVVP 394 (882)
Q Consensus 317 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~-~~~~g-~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 394 (882)
.+.....-.+..|-..++-+.|.......+..-..--+.|+.+ +-+.| +-.++.--++...++..+..+. |.
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~------i~ 168 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV------IE 168 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH------HH
Confidence 3444444556666667788888888887776533333344333 22222 2223333333332221111110 11
Q ss_pred HhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhc--CChHHHHHHHhhCC-----CCCeeeHHHHHHHHHhcCC
Q 002772 395 ACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRM--GRIEISKTIFDDME-----VRDTVSWNTMITGYTICGQ 467 (882)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~ 467 (882)
+..+.+ +..+..--..|-+...++.......-+.+|+.+ ++-..|...|-... ..|+....++...+...|+
T Consensus 169 ~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 169 ALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 100000 000011111111222333333333344444433 33333333332222 3366678888899999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch----HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHH
Q 002772 468 HGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT----LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGS 543 (882)
Q Consensus 468 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 543 (882)
.++|...|++.+. +.|+.++ |..+ +...|+.+....+...+....- .....|-
T Consensus 248 n~~a~~~Fe~~~~-------------------~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wf 304 (564)
T KOG1174|consen 248 YFQAEDIFSSTLC-------------------ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVK-YTASHWF 304 (564)
T ss_pred chHHHHHHHHHhh-------------------CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhh-cchhhhh
Confidence 9999999999864 5555443 2223 2445666666655555543220 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPVR---NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAA 619 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a 619 (882)
.-........+++.|+.+-++..+- ++..|-.-...+.+.|+.++|.-.|+..+. ..| +...|..|+..
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~-------Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM-------LAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh-------cchhhHHHHHHHHHH
Confidence 1122333456788888887776633 344443334567788999999999999887 445 57799999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHhhc-cCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchh
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV-DLLGR-AGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~l~r-~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
|...|.+.||..+-+...+ -+..+..+.+.+. +.+.- ..--++|.+++++. ..+|+...+-..+.--|...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 9999999999988777765 3344555555542 33332 22347889998864 678988878888888899999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHH
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLH 776 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~ 776 (882)
.+...+++.+...||+ ..++.|+.++...+.+.+|.+.+..... ..|+.+...
T Consensus 456 D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl 508 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTL 508 (564)
T ss_pred hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHH
Confidence 9999999999999965 5688999999999999999988886544 346666666
Q ss_pred HHHHHHHHHHH
Q 002772 777 GFLENLSERMR 787 (882)
Q Consensus 777 ~~l~~l~~~m~ 787 (882)
.-++.|.++|.
T Consensus 509 ~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 509 RGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHhccC
Confidence 66667776665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00014 Score=80.11 Aligned_cols=574 Identities=12% Similarity=0.073 Sum_probs=266.6
Q ss_pred CCcchHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhc--------CC
Q 002772 40 RCKESWIESLR--SEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYG--------YG 109 (882)
Q Consensus 40 ~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~ 109 (882)
-|.++--+++. .|..-|+.+.|....+.++. ...|..+.+.|.+.++++-|+-....|.... .+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34445555543 45667888888777766644 3468888888888888887776666553211 11
Q ss_pred CCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002772 110 LSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA 189 (882)
Q Consensus 110 ~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 189 (882)
.+...-....-.....| .+++|..++.+-.. |..|=..|-..|.+++|+++-+.=-+-.++.+-+.|.--|.+
T Consensus 798 -~~~e~eakvAvLAieLg-MlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 798 -NGEEDEAKVAVLAIELG-MLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -CCcchhhHHHHHHHHHh-hHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 11011111122223445 66666666654332 334444555567777777666543222222222222211111
Q ss_pred hccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHH
Q 002772 190 CSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVM 269 (882)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (882)
. ++++.|...++.. |.+--.+. .|+. .++....+..+.+.++ ..|.---..+-..|+.+.|+.
T Consensus 871 ---r---~Di~~AleyyEK~---~~hafev~-rmL~-----e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 871 ---R---RDIEAALEYYEKA---GVHAFEVF-RMLK-----EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred ---h---ccHHHHHHHHHhc---CChHHHHH-HHHH-----hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHH
Confidence 1 2333332222211 10000000 0000 0111112222222222 233333344445677777777
Q ss_pred HHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCC
Q 002772 270 FLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKK 349 (882)
Q Consensus 270 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 349 (882)
+|...+. |-++++..+-.|+.++|-++-++ ..|....-.|..+|-..|++.+|...|.+..
T Consensus 934 ~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--- 994 (1416)
T KOG3617|consen 934 FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ--- 994 (1416)
T ss_pred HHHHhhh---------hhhheeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---
Confidence 7776554 45566666777777777766543 2355566667777777777777777776542
Q ss_pred ceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHH
Q 002772 350 IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMD 429 (882)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 429 (882)
++...|+.+-.++.-++ +.-+..| +...+.-.|..+|++ .|... .--+.
T Consensus 995 --afsnAIRlcKEnd~~d~-L~nlal~--------------------s~~~d~v~aArYyEe---~g~~~-----~~AVm 1043 (1416)
T KOG3617|consen 995 --AFSNAIRLCKENDMKDR-LANLALM--------------------SGGSDLVSAARYYEE---LGGYA-----HKAVM 1043 (1416)
T ss_pred --HHHHHHHHHHhcCHHHH-HHHHHhh--------------------cCchhHHHHHHHHHH---cchhh-----hHHHH
Confidence 34444444333322221 1111111 111111122222222 22111 12334
Q ss_pred HHHhcCChHHHHHHHhhCC--------------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccc
Q 002772 430 MYSRMGRIEISKTIFDDME--------------VRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495 (882)
Q Consensus 430 ~y~~~g~~~~A~~~~~~m~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (882)
.|-|.|.+.+|+++--.-. ..|....+--..-++.+.++++|..++....+
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~--------------- 1108 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE--------------- 1108 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------
Confidence 5777777777766522111 11333444445566777888888888776654
Q ss_pred cccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHH--HhcCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 002772 496 TVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAI--RNMLAT---DVVVGSALVDMYAKCGCLNFARRVFDLMPVRNV 570 (882)
Q Consensus 496 ~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~ 570 (882)
|.-.+..|...+ +.-..++-..|. +.+..+ -..+...+.+.+.+.|.+..|-+-|.+.-.+
T Consensus 1109 -----------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-- 1174 (1416)
T KOG3617|consen 1109 -----------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-- 1174 (1416)
T ss_pred -----------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--
Confidence 222333333222 111112212111 111111 1234555666677777777777666554311
Q ss_pred hhHHHHHHHHHccCChhH----------------HHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHH
Q 002772 571 ITWNVIIMAYGMHGEGQE----------------VLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFY 634 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~----------------A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 634 (882)
-.-+.++.+.|+.++ |..+++. .+ .+-|..+...++.-|.+..-++.--.+|.
T Consensus 1175 ---l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt---lD-----Wq~~pq~mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1175 ---LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT---LD-----WQDNPQTMKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred ---HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh---cc-----cccChHHHhhhHhhhhcchhHHHHHHHHH
Confidence 112334444444332 2222221 11 33344444444444444333333333333
Q ss_pred HhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH----------HHHHHhcC-chhHHHHHHH
Q 002772 635 KMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL----------LGACRIHQ-NVEIGEIAAQ 703 (882)
Q Consensus 635 ~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l----------l~a~~~~~-~~~~a~~~~~ 703 (882)
.... ..++.|..+-.+ .|-+++|.+.+.+...+......+++| +...+... |...+.+-.+
T Consensus 1244 ~cAq-----iEiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~ 1315 (1416)
T KOG3617|consen 1244 SCAQ-----IEIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCT 1315 (1416)
T ss_pred HHHH-----hhHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2221 122222222221 234455555555443222222133333 22222222 3344444444
Q ss_pred HHhcCCCCCC------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 704 NLFLLEPDVA------SHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 704 ~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+++ +|..+ ..|..|+.-|....+|..|-+.++.|..+
T Consensus 1316 ~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1316 TLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 4443 34333 45778999999999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-05 Score=81.82 Aligned_cols=435 Identities=13% Similarity=0.108 Sum_probs=240.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHH--HHHHHH-
Q 002772 152 IATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNA--LMAMYA- 228 (882)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--Li~~y~- 228 (882)
+.-+.++|++++|+.........+ +-|...+..-+-+.... +.++.+.. .+.+.+.. .+++. +=.+|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~---~ky~~ALk---~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQL---DKYEDALK---LIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhh---hHHHHHHH---HHHhcchh--hhcchhhHHHHHHH
Confidence 345566788899999999888755 22333444444444444 44444442 22222210 11111 234444
Q ss_pred -hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-ChhhHhhHHHHhccCCChhHHHHHH
Q 002772 229 -KLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP-DGVSIASVLPACSHLEMLDTGKEIH 306 (882)
Q Consensus 229 -~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~ 306 (882)
+.+..|+|+..++....-|..+-..-...+.+.|++++|+++|+.+.+++..- |..--..++.+-... +.
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 57888899888885555554455555667788899999999999987765431 111122222221111 11
Q ss_pred HHHHHhCCCCC-chhHHHHHHHHhhcCCChHHHHHHHhcc--------CCCCce----------ehHHHHHHHhcCCChH
Q 002772 307 AYALRNDILID-NSFVGSALVDMYCNCREVECGRRVFDFI--------SDKKIA----------LWNAMITGYGQNEYDE 367 (882)
Q Consensus 307 ~~~~~~g~~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~ 367 (882)
..+......+. +-..+-.....+...|++.+|+++++.. .+.|.. .---|.-++-..|+-+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 01111110121 1112222344566788999998888776 223332 1112334566678889
Q ss_pred HHHHHHHHHHHHcCCCCCcchHhhH---HhHhhcCCCCcch--hhHHHHHH-----------HhCCCCchHHHHHHHHHH
Q 002772 368 EALMLFIKMEEVAGLWPNATTMSSV---VPACVRSEAFPDK--EGIHGHAI-----------KLGLGRDRYVQNALMDMY 431 (882)
Q Consensus 368 ~A~~l~~~m~~~~g~~p~~~t~~~l---l~~~~~~~~~~~a--~~~~~~~~-----------~~g~~~~~~~~~~Li~~y 431 (882)
+|..+|..... .-.+|....... |.+.....++..+ ...++... ...-......-+.|+.+|
T Consensus 242 ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888732 233444322222 2233333333332 11111100 000011122224455555
Q ss_pred HhcCChHHHHHHHhhCCCCC-eeeHHHHHHHHH--hcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchH
Q 002772 432 SRMGRIEISKTIFDDMEVRD-TVSWNTMITGYT--ICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITL 507 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~ 507 (882)
. +..+.++++-...+... ...+.+++.... +...+.+|.+++....+ +.+-+ ....
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------------------~~p~~s~~v~ 379 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------------------GHPEKSKVVL 379 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc------------------cCCchhHHHH
Confidence 3 45566777766665332 233444444322 22356777777777765 33222 2334
Q ss_pred hhHHHhhcCcchHHHHHHHHH--------HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCChh--
Q 002772 508 MTVLPGCGALSALAKGKEIHA--------YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP------VRNVI-- 571 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~------~~~~~-- 571 (882)
...++.....|+++.|.+++. .+.+.+.. +.+..+++.+|.+.++-+.|..++++.. .+...
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 445566778899999999998 45454444 4456678889999888877777777654 22222
Q ss_pred --hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHH
Q 002772 572 --TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFY 634 (882)
Q Consensus 572 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 634 (882)
.|.-+...-.++|+.++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFN------PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhC------CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 23333344457799999999999998864 57788888888888774 4666665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-05 Score=86.76 Aligned_cols=577 Identities=13% Similarity=0.020 Sum_probs=298.8
Q ss_pred hHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC---CCceeHHHHHHHHHhcCCchHHHHHHHHH
Q 002772 95 LGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE---KDQVSWNSMIATLCRFGKWDLALEAFRMM 171 (882)
Q Consensus 95 ~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 171 (882)
.+..++..+....+.+.-...|..|-..|.... +...|.+.|+...+ -|..+|......|++..+++.|..+.-.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 344444455554544344567888888888888 88889999987665 36678888999999999999998883222
Q ss_pred HHCCCCC-ChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCccc
Q 002772 172 LYSNVEP-SSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVS 250 (882)
Q Consensus 172 ~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 250 (882)
-+ ..| -...++.+-.+.... ..++...+..-++...+..+.|...|..|..+|.++|++..|.++|+....-+..+
T Consensus 553 ~q--ka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQ--KAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hh--hchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 11 111 011111111221111 01445555555566666667788888888888888888888888887766533332
Q ss_pred HHH---HHHHHHcCCChHHHHHHHHHHHHCC------CCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhH
Q 002772 251 WNT---IVSSLSQNDKFLEAVMFLRQMALRG------IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFV 321 (882)
Q Consensus 251 ~~~---li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 321 (882)
|-. ....-+..|.+.+|++.+....... ..--..++..+...+.-.|-...+..+++.
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek------------- 696 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK------------- 696 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH-------------
Confidence 221 1122355778888887777655421 000011111111111111111111111111
Q ss_pred HHHHHHHhhcCCChHHHHHHHhccCCC----CceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhh
Q 002772 322 GSALVDMYCNCREVECGRRVFDFISDK----KIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACV 397 (882)
Q Consensus 322 ~~~Li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~ 397 (882)
+...|.-.... +...|-. ...|..+|.+. + .. .|+......+..-.-
T Consensus 697 ----------------sie~f~~~l~h~~~~~~~~Wi~----------asdac~~f~q~-e-~~-~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 697 ----------------SIESFIVSLIHSLQSDRLQWIV----------ASDACYIFSQE-E-PS-IVNMHYLIILSKQLE 747 (1238)
T ss_pred ----------------HHHHHHHHHHHhhhhhHHHHHH----------HhHHHHHHHHh-c-cc-chHHHHHHHHHHHHH
Confidence 11111100000 0011111 12233333333 1 00 222222222222111
Q ss_pred cCCCC---c---chhhHHHHHHHhCCCCchHHHHHHHHHHHh----cCC----hHHHHHHHhhCC---CCCeeeHHHHHH
Q 002772 398 RSEAF---P---DKEGIHGHAIKLGLGRDRYVQNALMDMYSR----MGR----IEISKTIFDDME---VRDTVSWNTMIT 460 (882)
Q Consensus 398 ~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~----~~~A~~~~~~m~---~~~~~~~~~li~ 460 (882)
..+.. + .|.+.+. ....+..+...|.-|+.-|.+ +|. ...|...+.... ..+...||.|-.
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV 825 (1238)
T ss_pred hcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 11111 1 0000000 011112223333333332222 222 234555555433 446667777655
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchh
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVV 540 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 540 (882)
. ...|.+.-|...|-+-.. ..+.+..+|..+--.|....+++.|.+.+...+... +.+..
T Consensus 826 l-sg~gnva~aQHCfIks~~------------------sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~ 885 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRF------------------SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLV 885 (1238)
T ss_pred h-hccchhhhhhhhhhhhhh------------------ccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhH
Confidence 5 555667777777766654 345566777777777888888888888888776543 12333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC--------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC----CCcccC
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP--------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSR----GGEVKP 608 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----~~~~~p 608 (882)
-|--..-.-...|+.-++..+|..-. -++..-|-+-..-..++|+.++-+..-+.+-..... -++.+-
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 33222233345677777777776521 345555655555556677766544433332211000 000233
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHhhccCCHHHHHHHHHhCCCCCCchhhHHH
Q 002772 609 NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACV----VDLLGRAGKVEDAYQLINMMPPEFDKAGAWSS 684 (882)
Q Consensus 609 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ 684 (882)
+...|........+.+..++|.+...+...-...+-+...|+.. ..++...|.++.|..-+...+.+-+.. +-+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEd-i~gt 1044 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDED-IRGT 1044 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHH-Hhhh
Confidence 36778888888888888888888877765433334455566643 344555788887776665544333333 3333
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH---HHHHcCCchHHHHHHHHHHh
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN---IYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~---~y~~~g~~~~a~~~~~~m~~ 741 (882)
=+.. .-.++++.+...|++++.+--++...-+++.. ....++.-+.|....-+...
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 2222 44678999999999999886655554444443 33445555667665555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-05 Score=80.69 Aligned_cols=379 Identities=12% Similarity=0.123 Sum_probs=217.9
Q ss_pred HHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHH
Q 002772 227 YAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303 (882)
Q Consensus 227 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 303 (882)
+...|+-++|......-.. ++.+.|..+--.+-...++++|++.|+..... .||..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~------------------- 109 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNL------------------- 109 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcH-------------------
Confidence 3345677777776665443 45677887777677777888888888777663 33322
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccC---CCCceehHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 002772 304 EIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFIS---DKKIALWNAMITGYGQNEYDEEALMLFIKMEEVA 380 (882)
Q Consensus 304 ~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 380 (882)
.++.-|.-.-+..++++.....-.... ......|..+..++.-.|+...|..+++......
T Consensus 110 ----------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 110 ----------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ----------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222222222222111111 1234568888888888999999999999884444
Q ss_pred CCCCCcchHhhHHh------HhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC--Ce
Q 002772 381 GLWPNATTMSSVVP------ACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR--DT 452 (882)
Q Consensus 381 g~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~~ 452 (882)
.-.|+...+..... .....|.++.+.+.+..-... +......-..-.+.+.+.+++++|..++..+..+ |.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 34566665543332 233455555555544433221 2222333344566788999999999999988744 55
Q ss_pred eeHHHHH-HHHHhcCCHHHHH-HHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHH
Q 002772 453 VSWNTMI-TGYTICGQHGDAL-MLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYA 530 (882)
Q Consensus 453 ~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 530 (882)
.-|+-.. .++.+-.+.-+++ .+|....+ ..+-.......-++......-.+....++...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~------------------~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSE------------------KYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------------------cCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 5554443 3443333334444 55555543 11111111111112222233334444555666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHH---H-HHHHHhhC--------------CCCChhhHHH--HHHHHHccCChhHHH
Q 002772 531 IRNMLATDVVVGSALVDMYAKCGCLN---F-ARRVFDLM--------------PVRNVITWNV--IIMAYGMHGEGQEVL 590 (882)
Q Consensus 531 ~~~g~~~~~~~~~~li~~y~k~g~~~---~-A~~~~~~m--------------~~~~~~~~~~--li~~~~~~g~~~~A~ 590 (882)
.+.|+++ ++..+...|-.-...+ + +..+...+ ..|....|+. ++..|-..|+++.|+
T Consensus 315 l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 315 LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 6666543 3333333333211111 1 11111111 1455666664 677788999999999
Q ss_pred HHHHHHHHcCCCCCcccCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 591 ELLKNMVAEGSRGGEVKPNEV-TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 591 ~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
.+.+..+. ..|+.+ -|..=..-+.|.|++++|..++++..+. -.||...-+--+.-+.|+.+.++|.++.
T Consensus 392 ~yId~AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 392 EYIDLAID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999988 458755 4555567789999999999999999863 3455555446677788999999999988
Q ss_pred HhCC
Q 002772 670 NMMP 673 (882)
Q Consensus 670 ~~m~ 673 (882)
....
T Consensus 463 skFT 466 (700)
T KOG1156|consen 463 SKFT 466 (700)
T ss_pred HHhh
Confidence 7664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00011 Score=80.80 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=140.3
Q ss_pred HhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-h
Q 002772 105 KYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITE---KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPS-S 180 (882)
Q Consensus 105 ~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 180 (882)
...+. .|+.+|..|.-+...+| .++.+.+.|++... .....|+.+-..|.-.|....|+.+.+.-....-.|+ .
T Consensus 316 ~~~~q-nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQ-NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred Hhhhc-chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33455 78999999999999999 99999999987542 2445799999999999999999999987654333343 3
Q ss_pred hhHHHHHHHhccCCcccchHHHHHHHHhhhhc--C---CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHH
Q 002772 181 FTLVSVALACSNLSRRDGLRLGRQVHGNSLRV--G---EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIV 255 (882)
Q Consensus 181 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--g---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 255 (882)
..+-..-+.|.... +.+++|...-..++.. + ...+..|-.+--+|...- ....++.-
T Consensus 394 s~~Lmasklc~e~l--~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se-- 455 (799)
T KOG4162|consen 394 SVLLMASKLCIERL--KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE-- 455 (799)
T ss_pred hHHHHHHHHHHhch--hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH--
Confidence 33444444455331 3333333333333221 1 112222222222222110 01111111
Q ss_pred HHHHcCCChHHHHHHHHHHHHCC-CCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCC
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRG-IKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCRE 334 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~ 334 (882)
+.....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+.....++.+ -..+...+..|.-.+.-.++
T Consensus 456 ----R~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 456 ----RDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhh
Confidence 1112456777777776643 345444444443 345567888888888888875 56777778878778888888
Q ss_pred hHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHHHHHH
Q 002772 335 VECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALMLFIKM 376 (882)
Q Consensus 335 ~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 376 (882)
+.+|..+.+...+. |.+....-+..-..-++.++++.....+
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH
Confidence 88888876654321 1111111112222245566666665555
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00015 Score=81.78 Aligned_cols=642 Identities=12% Similarity=0.025 Sum_probs=330.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHH
Q 002772 44 SWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMY 123 (882)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 123 (882)
.|..|-..|....+...|...|+...+-.. .+..........|++..+++.|..+.-...+......-..-|..+--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 455555566655566667777777665431 2444566677777777778777777222111110000111122222335
Q ss_pred HhcCCCHHHHHHHHhccCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH---hccCCccc
Q 002772 124 GKCGSDMWDVYKVFDRITE---KDQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALA---CSNLSRRD 197 (882)
Q Consensus 124 ~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~~~~~ 197 (882)
.+.+ ...+|..-|+.... .|..+|..+..+|.++|....|+.+|..... +.|+. +|.....+ |.. |
T Consensus 573 Lea~-n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~----G 644 (1238)
T KOG1127|consen 573 LEAH-NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDN----G 644 (1238)
T ss_pred cCcc-chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHh----h
Confidence 5556 77777777765442 3778899999999999999999999987754 34542 33322222 222 5
Q ss_pred chHHHHHHHHhhhhcCCCchhHHHHHHHHHHhc-------CChhHHHHHHhcCCCCCcccHHHHHHHH-HcCCC----hH
Q 002772 198 GLRLGRQVHGNSLRVGEWNTFIMNALMAMYAKL-------GRVDDAKTLFKSFEDRDLVSWNTIVSSL-SQNDK----FL 265 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g~~~~~~~~~Li~~y~~~-------g~~~~A~~~f~~m~~~~~~~~~~li~~~-~~~g~----~~ 265 (882)
..+.+....+.++..-.......+.|...+.++ |-..+|...|+. ....+...+... +.... ..
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek----sie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK----SIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHhhhhhHHHHHHHh
Confidence 566666666655544322222233333333332 222223333322 111221111111 11110 12
Q ss_pred HHHHHHHHHHHCCCCCChhhHhhHHHHhccCCCh---h---HHHHHHHHHHHhCCCCCchhHHHHHHHHhhc----C---
Q 002772 266 EAVMFLRQMALRGIKPDGVSIASVLPACSHLEML---D---TGKEIHAYALRNDILIDNSFVGSALVDMYCN----C--- 332 (882)
Q Consensus 266 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~----~--- 332 (882)
+|..+|-... .. .|+......+..-.-..+.. + .|-+.+-.-++ +..+...+..|+.-|.+ +
T Consensus 721 dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 721 DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCCc
Confidence 3344444333 11 33333333332222222222 1 11111111111 22223333333333322 2
Q ss_pred -CChHHHHHHHhccCC---CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhH
Q 002772 333 -REVECGRRVFDFISD---KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGI 408 (882)
Q Consensus 333 -g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 408 (882)
.+...|...+..-.. .+-..||.|--. ...|.+.-|.-.|-+- . ...+-...+|..+-..|....+++.|.+.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks-~-~sep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKS-R-FSEPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhh-h-hccccchhheeccceeEEecccHHHhhHH
Confidence 223356666655432 455677776555 5556676666666554 2 12233455677777777888888888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhC-----C---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 409 HGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDM-----E---VRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 409 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
+....... +.+...|--..-.-...|+.-++..+|..- . -++..-|-.-..-..++|+.++-+...+++..
T Consensus 873 f~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 873 FSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 88776543 333333333333334567777777777652 1 22334444444455667776665544444322
Q ss_pred hhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHH-hcCCCchhHHH----HHHHHHHhcCCH
Q 002772 481 MEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR-NMLATDVVVGS----ALVDMYAKCGCL 555 (882)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~----~li~~y~k~g~~ 555 (882)
. .+.+..-..+.+.+.+.|.......-+++..+.+.+...+++. .....|...|| .+...++..|.+
T Consensus 952 ---A-----s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 952 ---A-----SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred ---h-----HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 0 0000000014555566777777777777777777666655442 11223444455 344556677888
Q ss_pred HHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHH
Q 002772 556 NFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLF 633 (882)
Q Consensus 556 ~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~ 633 (882)
+.|..-+.... .-|...-..-+.. --.|+++++++.|++.+.--. -.-|. +....++-+...++.-+.|...+
T Consensus 1024 e~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~----se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1024 ESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISN----SESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred hhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcc----cccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 88888777655 2222222222222 235789999999999987320 12232 34455555666777788888766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHhh---ccCCHHHHHHHHHhCC----CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 634 YKMKDDYGIEPSPDHYACVVDLLG---RAGKVEDAYQLINMMP----PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 634 ~~m~~~~~~~p~~~~~~~li~~l~---r~g~~~eA~~~~~~m~----~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
-+... --+|+....-+|--++. .+-...-+++-++..+ +.-+.. .... -.+...|+-.......++++
T Consensus 1099 fe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~-ll~e--~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1099 FEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG-LLKE--LIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred HHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh-HHHH--HHHHHhhhhHHHHHHHHHHH
Confidence 66654 23455554444433332 2222222222232221 111111 1122 23567788889999999999
Q ss_pred cCCCCCCchHHHHHHHHHH
Q 002772 707 LLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 707 ~l~p~~~~~~~~l~~~y~~ 725 (882)
-..|.++..|..|+.-|++
T Consensus 1174 h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1174 HSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred hcCCCChHHHHHHHHHHHH
Confidence 9999999999999876654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-05 Score=84.25 Aligned_cols=420 Identities=15% Similarity=0.148 Sum_probs=227.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhh-HhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCC
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVS-IASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCRE 334 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~ 334 (882)
..+...|++++|++.+..-.. .-+|..+ +......+.+.|+.++|..++..+++.+ |.+...|..|..+..-...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 345677888888888866433 2344443 3444555667777777777777777776 5555555555554422210
Q ss_pred hHHHHHHHhccCCCCceehHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCC-cchhhHHHHHH
Q 002772 335 VECGRRVFDFISDKKIALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAF-PDKEGIHGHAI 413 (882)
Q Consensus 335 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~ 413 (882)
......+...++|+++ . ..-|.......+.-.+.....+ ..+..++..++
T Consensus 88 --------------------------~~~~~~~~~~~~y~~l-~--~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 88 --------------------------LSDEDVEKLLELYDEL-A--EKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred --------------------------cccccHHHHHHHHHHH-H--HhCccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 0111234444555554 2 1223332222221111111111 12333444444
Q ss_pred HhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC------------------CCCeeeH--HHHHHHHHhcCCHHHHHH
Q 002772 414 KLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME------------------VRDTVSW--NTMITGYTICGQHGDALM 473 (882)
Q Consensus 414 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~------------------~~~~~~~--~~li~~~~~~g~~~~A~~ 473 (882)
+.|+++ +++.|-..|....+.+-..+++.... .|....| .-+...|...|++++|++
T Consensus 139 ~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455432 34444444544333333333333221 1222234 445667888899999999
Q ss_pred HHHHHhhhhhhhhccccccccccccCCCCCc-chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 002772 474 LLREMQNMEEEKNRNNVYDLDETVLRPKPNS-ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKC 552 (882)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~ 552 (882)
.+++.++ ..|+. ..|..-...+-+.|++.+|.+..+.+..... -|.++.+-.+..+.++
T Consensus 216 ~Id~aI~-------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 216 YIDKAIE-------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHh-------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHC
Confidence 9998886 44554 3555666778889999999999988887663 3888888899999999
Q ss_pred CCHHHHHHHHhhCCCCCh----------hhHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCccc-------------
Q 002772 553 GCLNFARRVFDLMPVRNV----------ITWN--VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK------------- 607 (882)
Q Consensus 553 g~~~~A~~~~~~m~~~~~----------~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~------------- 607 (882)
|++++|.+++.....++. ..|- ....+|.+.|++..|+.-|....+.-.. +.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~---~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD---FEEDQFDFHSYCLRK 352 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HhcccccHHHHHHhh
Confidence 999999999988875542 2332 3467789999999998877766552100 11
Q ss_pred CChhHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCCChhH-----------HHHHHHHh---hccCCHHHHH
Q 002772 608 PNEVTFIALFAACSHSGM-------VSEGMDLFYKMKDDYGIEPSPDH-----------YACVVDLL---GRAGKVEDAY 666 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------~~~li~~l---~r~g~~~eA~ 666 (882)
....+|..++...-+... ...|.+++-.+...-........ -..+-.-. .+....+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 222334444432211110 12233444333322000000000 00000000 0001111111
Q ss_pred HHHH--------------hC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchH
Q 002772 667 QLIN--------------MM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 667 ~~~~--------------~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
..-. .. +...|.. ..+.-+ .....=++.|.+.++-+.+..|++..+|.+--.+|.+.|++--
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~D-p~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDD-PLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCC-ccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 1100 00 1111111 212111 1223356889999999999999999999999999999999998
Q ss_pred HHHHHH
Q 002772 732 AMDVRK 737 (882)
Q Consensus 732 a~~~~~ 737 (882)
|++.++
T Consensus 510 aLqaL~ 515 (517)
T PF12569_consen 510 ALQALK 515 (517)
T ss_pred HHHHHH
Confidence 887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-06 Score=90.96 Aligned_cols=201 Identities=13% Similarity=0.046 Sum_probs=152.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC---Chh
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP---NEV 611 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p---d~~ 611 (882)
+...|--|...-+..++-..|+..+.+.. +.|....-+|...|...|.-.+|+..++.-+....+-.-..+ +..
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 34455556666666666666777776655 456777888888899999999999999888764310000000 100
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~ 690 (882)
+-.. ....+...+....++|-.+....+.++|++++.+|.-+|--.|.+++|.+.|+.. ..+|++...|+-|+..+.
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 2223334455666777777665576789999999999999999999999999975 678999889999999999
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
...+.++|+.+|.++++|.|....+...|+-.|...|.++||.+.+-...
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=84.69 Aligned_cols=220 Identities=11% Similarity=-0.003 Sum_probs=123.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHh
Q 002772 354 NAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSR 433 (882)
Q Consensus 354 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 433 (882)
+-|-.+|.+.|.+.+|...|+.- ....|-..||..+ -..|.+
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqss---L~q~~~~dTfllL-----------------------------------skvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSS---LTQFPHPDTFLLL-----------------------------------SKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHH---hhcCCchhHHHHH-----------------------------------HHHHHH
Confidence 34566667777777776666665 1223333444444 445555
Q ss_pred cCChHHHHHHHhhCCC--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhH
Q 002772 434 MGRIEISKTIFDDMEV--R-DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTV 510 (882)
Q Consensus 434 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~l 510 (882)
..+.+.|+.+|.+-.+ | |+....-+...+...++.++|++++++..+ -...+.....++
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk------------------~~~~nvEaiAci 330 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK------------------LHPINVEAIACI 330 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh------------------cCCccceeeeee
Confidence 5555555555554432 2 222233344555556677777777777765 233344455555
Q ss_pred HHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC--hhhHHHHHHHHHccC
Q 002772 511 LPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP----VRN--VITWNVIIMAYGMHG 584 (882)
Q Consensus 511 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~--~~~~~~li~~~~~~g 584 (882)
-..+.-.++.+.|...+..+.+.|.. ++..|+.+.-++.-.++++-++.-|++.. .|+ ...|-.+.....-.|
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEecc
Confidence 55555556666666666666666654 55566666666666666666666555433 333 234555555555566
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 585 EGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 585 ~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
++.-|-+.|+-.+..+ |+ ...++.|.-.-.+.|++++|..+++...
T Consensus 410 D~nlA~rcfrlaL~~d-------~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSD-------AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred chHHHHHHHHHHhccC-------cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 6666666666665543 33 3455555555556666666666666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00023 Score=76.95 Aligned_cols=413 Identities=10% Similarity=0.039 Sum_probs=209.0
Q ss_pred CCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhcCCChHHHHHH
Q 002772 296 LEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQNEYDEEALML 372 (882)
Q Consensus 296 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 372 (882)
.++...+....+.+++. .+....+.....-.+...|+.++|......-... +.+.|..+.-.+-...++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555552 3444444433333445566677776666554443 345677776666666777777777
Q ss_pred HHHHHHHcCCCCCcch-HhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 002772 373 FIKMEEVAGLWPNATT-MSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEV-- 449 (882)
Q Consensus 373 ~~~m~~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-- 449 (882)
|+.. ..+.||... +.-+--.-++.++++..........+.. +.....|..+..++.-.|+...|..+.+....
T Consensus 98 y~nA---l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 98 YRNA---LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHH---HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776 334454432 2222222234445544444444443322 22234455555555556666666655554331
Q ss_pred ---CCeeeHHHH------HHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchH-hhHHHhhcCcch
Q 002772 450 ---RDTVSWNTM------ITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITL-MTVLPGCGALSA 519 (882)
Q Consensus 450 ---~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~-~~ll~a~~~~~~ 519 (882)
++...+... .......|..++|++.+..-.. -..|...+ -+-..-..+++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-------------------~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-------------------QIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-------------------HHHHHHHHhhhHHHHHHHHhh
Confidence 122222211 1223345555555555544432 11111111 111223345566
Q ss_pred HHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHH-HHHhhCC--CCChhhHHHHHHHHHccCC-hhHHHHHHH
Q 002772 520 LAKGKEIHAYAIRNMLATDVV-VGSALVDMYAKCGCLNFAR-RVFDLMP--VRNVITWNVIIMAYGMHGE-GQEVLELLK 594 (882)
Q Consensus 520 ~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~k~g~~~~A~-~~~~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~ 594 (882)
+++|..++..++..+ ||.. .|-.+..++.+--+.-++. .+|.... .|-...-.-+--....... .+..-+++.
T Consensus 235 lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 666666666665543 2332 3333334443332333333 4444433 0100000000011111122 233444566
Q ss_pred HHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH----HHHHHhHHhcCC----------CCChh--HHHHHHHHhhc
Q 002772 595 NMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM----DLFYKMKDDYGI----------EPSPD--HYACVVDLLGR 658 (882)
Q Consensus 595 ~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~----~~~~~m~~~~~~----------~p~~~--~~~~li~~l~r 658 (882)
.+++.| ++| +|..+.+-+-.-...+--. .+...+... |. +|+.. ++-.++..+-+
T Consensus 313 ~~l~Kg-----~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 313 PLLSKG-----VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHhhcC-----CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 666766 443 2333333333222222111 122212111 11 34433 34567788889
Q ss_pred cCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 002772 659 AGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 659 ~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
.|+++.|..+++.. .-.|..+..+-.-...+...|+++.|-..++++.+++-.|..+...-++-..++.+.++|.++..
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999875 34465554555556777888899999999999999987666655567777778889999999988
Q ss_pred HHHhCCC
Q 002772 738 KMKEMGV 744 (882)
Q Consensus 738 ~m~~~g~ 744 (882)
+..+.|.
T Consensus 464 kFTr~~~ 470 (700)
T KOG1156|consen 464 KFTREGF 470 (700)
T ss_pred Hhhhccc
Confidence 8877664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-05 Score=83.45 Aligned_cols=295 Identities=9% Similarity=-0.066 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC---CCCeeeH---HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccc
Q 002772 424 QNALMDMYSRMGRIEISKTIFDDME---VRDTVSW---NTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETV 497 (882)
Q Consensus 424 ~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (882)
+..+...|...|+.+.+.+.+.... .++...+ ......+...|++++|.+.+++..+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------- 71 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD----------------- 71 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 3334444455555555444444332 1122211 1123345667888888888888776
Q ss_pred cCCCCCcc-hHhh---HHHhhcCcchHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCC
Q 002772 498 LRPKPNSI-TLMT---VLPGCGALSALAKGKEIHAYAIRNMLAT-DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRN 569 (882)
Q Consensus 498 ~~~~p~~~-t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~ 569 (882)
. .|+.. .+.. ........+....+.+.... .....| .......+...+...|++++|...+++.. +.+
T Consensus 72 -~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 72 -D-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred -H-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 23332 3221 11111223444444444433 111222 23344556678888999999999998876 445
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE--VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
...+..+...|...|++++|++++++.+.... ..|+. ..+..+...+...|++++|..++++........+...
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 66777888888889999999999998887530 11232 2345667778888999999999988754211112221
Q ss_pred HH-H--HHHHHhhccCCHHHHHHH---HHhC-CCCCC--chhhHHHHHHHHHhcCchhHHHHHHHHHhcCC-C-------
Q 002772 648 HY-A--CVVDLLGRAGKVEDAYQL---INMM-PPEFD--KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE-P------- 710 (882)
Q Consensus 648 ~~-~--~li~~l~r~g~~~eA~~~---~~~m-~~~p~--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~-p------- 710 (882)
.. . .+...+...|..+.+..+ ...- +..|. ..........++...|+.+.|....+.+.... .
T Consensus 224 ~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 303 (355)
T cd05804 224 DLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQP 303 (355)
T ss_pred HHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhh
Confidence 11 1 223333334433222222 1111 11011 11122345566777888888888887765522 1
Q ss_pred -CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 711 -DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 711 -~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.......+.+..+...|++++|.+.+......+
T Consensus 304 ~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 304 ARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234556788889999999999999888776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-05 Score=82.15 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=137.4
Q ss_pred hhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hhHHHHH
Q 002772 508 MTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNV----------ITWNVII 577 (882)
Q Consensus 508 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~----------~~~~~li 577 (882)
.-+.++..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+..- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555556667777777777776655 4666667777788888777766655544332211 1122234
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH-YACVVDLL 656 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~l 656 (882)
.+|.+.++++.|+..|++.+... ..||..+ +....+++....+... -+.|.... ...=...+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~-----Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEH-----RTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEA 368 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhh-----cCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHH
Confidence 46667788888888888877765 4554432 2222333333333322 23333211 11114556
Q ss_pred hccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 657 GRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
-+.|++.+|...+.++ ...|++...+.....++...|++..|..-++..++++|+....|.-=+-++....+|++|.+.
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888777765 346777767778888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHhC
Q 002772 736 RKKMKEM 742 (882)
Q Consensus 736 ~~~m~~~ 742 (882)
+.+-.+.
T Consensus 449 y~eale~ 455 (539)
T KOG0548|consen 449 YQEALEL 455 (539)
T ss_pred HHHHHhc
Confidence 7765554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-05 Score=88.00 Aligned_cols=257 Identities=12% Similarity=0.005 Sum_probs=185.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcch-HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCc
Q 002772 460 TGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSIT-LMTVLPGCGALSALAKGKEIHAYAIRNMLATD 538 (882)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 538 (882)
..+...|++++|++.+.+-.. ..+|..+ +......+.++|+.++|..++..+++.+. .+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-Cc
Confidence 456778999999999977643 4455444 44556678899999999999999999874 35
Q ss_pred hhHHHHHHHHHHhc-----CCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCCcccCCh
Q 002772 539 VVVGSALVDMYAKC-----GCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEG-QEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 539 ~~~~~~li~~y~k~-----g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
..-|..|..+..-. ...+....+|+++. -|.......+.-.+.....+ ..+.+++..++..| +++
T Consensus 72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-----vPs-- 144 (517)
T PF12569_consen 72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-----VPS-- 144 (517)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-----Cch--
Confidence 55566666666322 25677778888765 23333333333333332233 34556777788888 543
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhc---C----------CCCChh--HHHHHHHHhhccCCHHHHHHHHHhC-CC
Q 002772 611 VTFIALFAACSHSGMVSEGMDLFYKMKDDY---G----------IEPSPD--HYACVVDLLGRAGKVEDAYQLINMM-PP 674 (882)
Q Consensus 611 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~----------~~p~~~--~~~~li~~l~r~g~~~eA~~~~~~m-~~ 674 (882)
+|+.|-..|....+.+-..+++....... + -.|+.. ++..+...|.+.|++++|++++++. ..
T Consensus 145 -lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 145 -LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred -HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 56666666766666655556666554321 1 123332 4456688899999999999999965 56
Q ss_pred CCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002772 675 EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 675 ~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
.|..+..+..-...+...|+++.|...++.+.++++.|--...-.+..+.++|+.++|.++.......+.
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 7888878888899999999999999999999999999988888899999999999999999998877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-05 Score=75.53 Aligned_cols=192 Identities=14% Similarity=0.023 Sum_probs=135.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHH
Q 002772 543 SALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFA 618 (882)
Q Consensus 543 ~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~ 618 (882)
..|.-.|...|+...|..-+++.. .| +..+|..+...|-+.|+.+.|.+-|++.+.. .|+ ....|....
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-------~p~~GdVLNNYG~ 111 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-------APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-------CCCccchhhhhhH
Confidence 345667778888888888887766 23 4567777888888888888888888888774 354 445666666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
-+|..|.+++|...|+.....-...--..+|..++-+-.++|+.+.|.+.+++. ...|+.+...-.+..-....|+.-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 677778888888888887765222223567777777777888888888877764 4456655566677777777778888
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 698 GEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
|...+++...--+-.....-+.+.+-...|+-+-|.+.=.++..
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888877776666666666777777777777776665555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=79.54 Aligned_cols=124 Identities=13% Similarity=-0.041 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 590 LELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
..+|++.++ +.|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...+
T Consensus 13 ~~~~~~al~-------~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLS-------VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHH-------cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456677766 44664 445667778889999999999888752 2335777888888888999999999888
Q ss_pred HhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 670 NMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 670 ~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
++. ...|+....|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 876 4578777789999999999999999999999999999999998888777654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=93.40 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=140.6
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccc
Q 002772 416 GLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDE 495 (882)
Q Consensus 416 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 495 (882)
+++|--..-..+...+.++|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+-.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--------------- 452 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--------------- 452 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc---------------
Confidence 345555566677788888888888888888764 577788888888888888877777654
Q ss_pred cccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH
Q 002772 496 TVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNV 575 (882)
Q Consensus 496 ~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~ 575 (882)
- +||...|..|.+..-....++.|.++++....+-...|+.
T Consensus 453 ----k-----------------------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~ 493 (777)
T KOG1128|consen 453 ----K-----------------------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLAL 493 (777)
T ss_pred ----C-----------------------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcc
Confidence 2 3344445555555444445555555555443221111111
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDL 655 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 655 (882)
+ ..+.++++++.+.|+.-.+.+ +-...||..+..+..+.++++.|.+.|.....
T Consensus 494 ~---~~~~~~fs~~~~hle~sl~~n------plq~~~wf~~G~~ALqlek~q~av~aF~rcvt----------------- 547 (777)
T KOG1128|consen 494 L---ILSNKDFSEADKHLERSLEIN------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT----------------- 547 (777)
T ss_pred c---cccchhHHHHHHHHHHHhhcC------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-----------------
Confidence 1 123577777777777766643 22345666666666666666666666665543
Q ss_pred hhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 002772 656 LGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDV 735 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 735 (882)
.+|+....|++|-.++.++++-.+|...++++++.+-++...+-...-+-.+.|.|++|.+.
T Consensus 548 ------------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 548 ------------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred ------------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 35666667777777777777777777777777776655555555555555667777777777
Q ss_pred HHHHHhCC
Q 002772 736 RKKMKEMG 743 (882)
Q Consensus 736 ~~~m~~~g 743 (882)
+.++.+..
T Consensus 610 ~~rll~~~ 617 (777)
T KOG1128|consen 610 YHRLLDLR 617 (777)
T ss_pred HHHHHHhh
Confidence 76665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00076 Score=74.48 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=75.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCC
Q 002772 41 CKESWIESLRSEARSNQFREAILSYIEMTRS-D--------IQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLS 111 (882)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 111 (882)
+-+.|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|.+++|+.++.+-.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4457999999999999998887776666432 1 1222 222222222346788899998887765432
Q ss_pred ChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCC-ceeHHHHHHHHHhcCCchHHHHHHHHH
Q 002772 112 SVTVANTLVNMYGKCGSDMWDVYKVFDRITEKD-QVSWNSMIATLCRFGKWDLALEAFRMM 171 (882)
Q Consensus 112 ~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 171 (882)
.|-..|...| .+++|.++-+.-..-. ..||-.-..-+-..++.+.|++.|+.-
T Consensus 831 ------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 831 ------LLNKLYQSQG-MWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred ------HHHHHHHhcc-cHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3445566778 8999988775432211 124555555556678888888888753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00018 Score=71.52 Aligned_cols=210 Identities=12% Similarity=0.047 Sum_probs=146.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
..|+...+......+++.. +.|...+..-.++|...|.+..|+.-+.... ..+..+.--+-..+...|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455555555555555432 4577777777889999999998887666544 55666666677778888999999999
Q ss_pred HHHHHHcCCCCCcccCChhHHH-----------HHH--HHHhccCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHH
Q 002772 593 LKNMVAEGSRGGEVKPNEVTFI-----------ALF--AACSHSGMVSEGMDLFYKMKDDYGIEPS-----PDHYACVVD 654 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~t~~-----------~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~ 654 (882)
.++-++ +.||..... .|- ......+.+.++++-.+...+. .|. ...+..+-.
T Consensus 246 iRECLK-------ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 246 IRECLK-------LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHc-------cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeee
Confidence 999888 458864311 111 1234456677777777666543 444 223445566
Q ss_pred HhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHH
Q 002772 655 LLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 733 (882)
++...|++-||+...++. .+.|+++.++.--..||......+.|+.-++++.+++|++..+-.-+ +.|.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Ak 385 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAK 385 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHH
Confidence 777889999999988775 57888777888888889888899999999999999999876543222 6677
Q ss_pred HHHHHHHhCCCcc
Q 002772 734 DVRKKMKEMGVRK 746 (882)
Q Consensus 734 ~~~~~m~~~g~~~ 746 (882)
++.++..++.+-|
T Consensus 386 rlkkqs~kRDYYK 398 (504)
T KOG0624|consen 386 RLKKQSGKRDYYK 398 (504)
T ss_pred HHHHHhccchHHH
Confidence 7666665554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-06 Score=80.98 Aligned_cols=119 Identities=8% Similarity=0.059 Sum_probs=96.0
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHH-HhcCc--hhHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGAC-RIHQN--VEIG 698 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~-~~~~~--~~~a 698 (882)
.++.+++...++...+ .-+.+...|..+...|...|++++|.+.+++. ...|++..+|..+..+. ...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777776665 23456777888888888888888888888765 46788877888888864 66666 5899
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..+++++++++|+++.++..|+..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-05 Score=81.45 Aligned_cols=215 Identities=9% Similarity=0.037 Sum_probs=158.9
Q ss_pred CcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCC---CCChhhHHHHHHHHHccCCh--hHH
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG-CLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEG--QEV 589 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--~~A 589 (882)
..+..++|......+++... -+..+|+....++.+.| .+++++..++++. ..+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34567788888888877542 24456666666777778 6799999998876 55677888776666666663 788
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc---CCH----
Q 002772 590 LELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA---GKV---- 662 (882)
Q Consensus 590 ~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~---g~~---- 662 (882)
+++++++++.+ +-|...|.....++.+.|+++++++.++++++. . .-+...|+....++.+. |..
T Consensus 128 l~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 128 LEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred HHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccH
Confidence 99999999855 335678888888888999999999999999874 2 23455555555555443 323
Q ss_pred HHHHHHH-HhCCCCCCchhhHHHHHHHHHhcC----chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC----------
Q 002772 663 EDAYQLI-NMMPPEFDKAGAWSSLLGACRIHQ----NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ---------- 727 (882)
Q Consensus 663 ~eA~~~~-~~m~~~p~~~~~~~~ll~a~~~~~----~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------- 727 (882)
+++.++. +.+...|++..+|+.+.+.+..++ +...+...+..++..+|.++.+...|+.+|+...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 4677776 455678888889999999998843 3466888899999999999999999999998743
Q ss_pred --------CchHHHHHHHHH
Q 002772 728 --------LWDKAMDVRKKM 739 (882)
Q Consensus 728 --------~~~~a~~~~~~m 739 (882)
..++|.++.+.+
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hccccccccHHHHHHHHHHH
Confidence 235677777766
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-06 Score=85.24 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHh--
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACS-- 621 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~-- 621 (882)
....+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-------eD~-~l~qLa~awv~l 176 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID-------EDS-ILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-------CCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CcH-HHHHHHHHHHHH
Confidence 3345667788888888888765 455555667778888888888888888887633 443 3333443332
Q ss_pred --ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHhcCch-hH
Q 002772 622 --HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM-MPPEFDKAGAWSSLLGACRIHQNV-EI 697 (882)
Q Consensus 622 --~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~-m~~~p~~~~~~~~ll~a~~~~~~~-~~ 697 (882)
-.+.+.+|..+|+++.++ ..+++...+.+..+....|+++||.+++++ +...|+++.++.+++..+...|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 223578888888887763 345666677777777777777777777665 344566665666666666666655 56
Q ss_pred HHHHHHHHhcCCCCCC
Q 002772 698 GEIAAQNLFLLEPDVA 713 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~ 713 (882)
+.+...++...+|+.+
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 6667777666677643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=81.59 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNV----ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV 611 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~ 611 (882)
....+-.++..|.+.|++++|...|+++. .|+. ..|..+...|.+.|++++|+..|+++++.. |+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cCCC
Confidence 34455666777777888888888887776 4542 355667777777888888888888887743 4422
Q ss_pred ----HHHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHhhccCCHHHHHHHHHhCCCCCCc
Q 002772 612 ----TFIALFAACSHS--------GMVSEGMDLFYKMKDDYGIEPSPD-HYACVVDLLGRAGKVEDAYQLINMMPPEFDK 678 (882)
Q Consensus 612 ----t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~ 678 (882)
++..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +..... ..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~---~~-------- 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNR---LA-------- 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHH---HH--------
Confidence 344444444443 5677777777777654 33321 12111111 001100 00
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 679 AGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA---SHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 679 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
. ....+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|...++.+..+
T Consensus 167 ~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 G-KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred H-HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0 223456668888999999999999999977654 68899999999999999999998887665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=59.57 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=29.8
Q ss_pred hCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 002772 415 LGLGRDRYVQNALMDMYSRMGRIEISKTIFDDME 448 (882)
Q Consensus 415 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 448 (882)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.4e-06 Score=74.48 Aligned_cols=108 Identities=9% Similarity=-0.023 Sum_probs=92.9
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 002772 631 DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE 709 (882)
Q Consensus 631 ~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 709 (882)
.+|+...+ +.|+ .+..+...+...|++++|.+.++.. ...|+...+|..+..++...|+.+.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3444 4667788899999999999999875 5678888799999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 710 PDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 710 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
|+++..+..++.+|...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00022 Score=75.55 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=118.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHHh
Q 002772 545 LVDMYAKCGCLNFARRVFDLMPV--RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAACS 621 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~ 621 (882)
+...|.+.++++.|...|.+... ++... ..+....++++...+...- +.|+.. -...=.+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~-------~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY-------INPEKAEEEREKGNEAF 369 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh-------hChhHHHHHHHHHHHHH
Confidence 44577777888888888887541 12111 1223445666666665555 345532 2222356677
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHH
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEI 700 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~ 700 (882)
+.|++..|+..|.++++. -+-|...|+.-.-+|.+.|.+.+|++=.+.. ...|+....|.--+.++....+.+.|..
T Consensus 370 k~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred hccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998874 2446778999999999999998888765543 4567766677777777788889999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHc
Q 002772 701 AAQNLFLLEPDVASHYVLLSNIYSSA 726 (882)
Q Consensus 701 ~~~~~~~l~p~~~~~~~~l~~~y~~~ 726 (882)
+++++++++|++..+...+...+...
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999988877777766653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.4e-06 Score=74.44 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 645 SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 645 ~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
+.+..-.+...+...|++++|..+|+.. ...|.....|-.|...|...|+.+.|..++.+++.++|+++..+..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556677788899999999999976 467888889999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 002772 724 SSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIHKFLAGDGSHQQSEQLHGFLENLSERMR 787 (882)
Q Consensus 724 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 787 (882)
...|+.++|.+-|+...... ..+|+..++..+.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999765531 256777888777777666553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00029 Score=70.08 Aligned_cols=288 Identities=12% Similarity=0.088 Sum_probs=184.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHH---HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMIT---GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN 503 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~ 503 (882)
|...+...|++.+|+.-|....+-|+..|.++.. .|...|+...|+.-|.+.++ .+||
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-------------------lKpD 104 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-------------------LKPD 104 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-------------------cCcc
Confidence 3344455566666666666666555555555432 45556666666666666553 4555
Q ss_pred cchHhh-HHHhhcCcchHHHHHHHHHHHHHhcCCCc--------------hhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 002772 504 SITLMT-VLPGCGALSALAKGKEIHAYAIRNMLATD--------------VVVGSALVDMYAKCGCLNFARRVFDLMP-- 566 (882)
Q Consensus 504 ~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--------------~~~~~~li~~y~k~g~~~~A~~~~~~m~-- 566 (882)
-..-.. --..+.+.|.++.|..=|+.+++...... .......+..+.-.|+...|+.....+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 321110 11233455666666666666655432111 0111223344556788888888888765
Q ss_pred -CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 002772 567 -VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS 645 (882)
Q Consensus 567 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 645 (882)
..|...|..-..+|...|++..|+.-++..-+.. .-+..++.-+-..+-..|+.+.++...++.. .+.|+
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---Kldpd 255 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPD 255 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcc
Confidence 4577777788889999999999998877776642 2345566666677778899888888777776 44665
Q ss_pred hh----HHHHH---HH------HhhccCCHHHHHHHHHh-CCCCCCch----hhHHHHHHHHHhcCchhHHHHHHHHHhc
Q 002772 646 PD----HYACV---VD------LLGRAGKVEDAYQLINM-MPPEFDKA----GAWSSLLGACRIHQNVEIGEIAAQNLFL 707 (882)
Q Consensus 646 ~~----~~~~l---i~------~l~r~g~~~eA~~~~~~-m~~~p~~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 707 (882)
-. +|..| +. ...+.+++.++.+--++ |..+|..+ .....+-..++.-+++-+|.....++++
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 22 23222 22 23456677776665554 34455522 1334444556777899999999999999
Q ss_pred CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 708 LEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 708 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
++|+|..++..-+..|.-..++|+|..-+++..+-
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988877654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0076 Score=74.62 Aligned_cols=367 Identities=8% Similarity=-0.076 Sum_probs=214.9
Q ss_pred HHHhhcCCChHHHHHHHhccCCCCcee--hHHHHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCc
Q 002772 326 VDMYCNCREVECGRRVFDFISDKKIAL--WNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFP 403 (882)
Q Consensus 326 i~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~ 403 (882)
...|...|++.+|........+.+... ...........|+...+...+..+ .......+..........+...++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344555667766666665554432211 111222344567777776766655 21111122222223333445678888
Q ss_pred chhhHHHHHHHhCCC------Cc--hHHHHHHHHHHHhcCChHHHHHHHhhCCC--C--Ce----eeHHHHHHHHHhcCC
Q 002772 404 DKEGIHGHAIKLGLG------RD--RYVQNALMDMYSRMGRIEISKTIFDDMEV--R--DT----VSWNTMITGYTICGQ 467 (882)
Q Consensus 404 ~a~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~--~~----~~~~~li~~~~~~g~ 467 (882)
++...+..+.+.--. +. ......+...+...|++++|...+++... + +. ..++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 888888776543111 11 12222334456789999999988887542 1 21 234555566778999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccccccccccCCCCC--cchHhhHHHhhcCcchHHHHHHHHHHHHHh----cCCC---c
Q 002772 468 HGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN--SITLMTVLPGCGALSALAKGKEIHAYAIRN----MLAT---D 538 (882)
Q Consensus 468 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~---~ 538 (882)
+++|...+.+....... .-.+. ..++..+...+...|+++.|...+...... +... .
T Consensus 507 ~~~A~~~~~~al~~~~~--------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 507 LARALAMMQQTEQMARQ--------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHHHHHhh--------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 99999999998752101 00111 123444555677889999999988776642 2211 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC------CC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP------VR--NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
...+..+...+...|++++|...+.+.. .+ ....+..+...+...|++++|.+.+++...... .....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~----~~~~~ 648 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG----NGRYH 648 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh----ccccc
Confidence 2345556677778899999998888764 11 123344456677889999999999988865320 01111
Q ss_pred hHHH-----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHhhccCCHHHHHHHHHhCC-------CC
Q 002772 611 VTFI-----ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS---PDHYACVVDLLGRAGKVEDAYQLINMMP-------PE 675 (882)
Q Consensus 611 ~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~l~r~g~~~eA~~~~~~m~-------~~ 675 (882)
..+. ..+..+...|..+.|.+++...... ..... ...+..+..++...|+.++|...+++.. ..
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~ 727 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM 727 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence 1111 1123345578889998887775431 11111 1113456677888899999888887641 12
Q ss_pred CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
++...++..+..++...|+.+.|...+++++++....
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 2222245556677888899999999999988876443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.4e-07 Score=58.61 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 641 GIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 641 ~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
|+.||..+|++||++|++.|++++|.+++++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=82.20 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=142.6
Q ss_pred hHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC---hhhHHH-HHHHH
Q 002772 506 TLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRN---VITWNV-IIMAY 580 (882)
Q Consensus 506 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~---~~~~~~-li~~~ 580 (882)
....+.+++..+|..+... ..+.+.. .|.......+...+...++-+.+..-+++.. .+. -.++.. ....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444556666666655332 2332222 5555555445444443355666666665544 221 112222 22346
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh---HHHHHHHHhh
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD---HYACVVDLLG 657 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~l~ 657 (882)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+....
T Consensus 113 ~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHh
Confidence 6789999999988642 2344556677888899999999999999974 344422 2334444444
Q ss_pred ccCCHHHHHHHHHhCCCC-CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCc-hHHHHH
Q 002772 658 RAGKVEDAYQLINMMPPE-FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW-DKAMDV 735 (882)
Q Consensus 658 r~g~~~eA~~~~~~m~~~-p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~ 735 (882)
-.+.+.+|..+|+++..+ +.++.+++.++.+....|++++|+..++.+++.+|.++.+...++-+....|+. +.+.+.
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 446799999999998544 333338888888999999999999999999999999999999999899999998 667788
Q ss_pred HHHHHhC
Q 002772 736 RKKMKEM 742 (882)
Q Consensus 736 ~~~m~~~ 742 (882)
+.+++..
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 8887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00015 Score=70.54 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=100.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH
Q 002772 545 LVDMYAKCGCLNFARRVFDLMPV-----RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a 619 (882)
-...+.+.|+.+.|.+.+-.|++ -|.+|...+.-.- ..|++.+..+-++-+++.+ +-...||..++-.
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n------PfP~ETFANlLll 319 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN------PFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC------CCChHHHHHHHHH
Confidence 34456788999999999999983 4677777664332 2455666666666666644 2235799999999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhc-cCCHHHHHHHHHhCCCCCCchhhHHHHH-HH-HHhcCc--
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR-AGKVEDAYQLINMMPPEFDKAGAWSSLL-GA-CRIHQN-- 694 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r-~g~~~eA~~~~~~m~~~p~~~~~~~~ll-~a-~~~~~~-- 694 (882)
|++..-++.|..++.+-....---.+...|+ |++.+.- .-..++|.+-+......-.. -.+.+. .. -.++.+
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~--kLRklAi~vQe~r~~~dd 396 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE--KLRKLAIQVQEARHNRDD 396 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccH
Confidence 9999989888888754322100001222233 3344433 34556665544433100000 111111 11 011111
Q ss_pred --hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 695 --VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 695 --~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+..+.+-++..+|+-- .....-+++|....++..+.++|..-
T Consensus 397 ~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHH
Confidence 1223334445555431 23456677888888888888877754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-05 Score=89.92 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=168.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMPV--------RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK 607 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 607 (882)
+.+...|-..|......++++.|++++++... --...|.++++.-...|.-+...++|+++.+.-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------- 1527 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------- 1527 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------
Confidence 44566787888888899999999999998761 124678888888888888889999999998843
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCC--chhhHHH
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFD--KAGAWSS 684 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~--~~~~~~~ 684 (882)
-....|..|..-|.+.+..++|.++++.|.++++ -....|..+++.+.+...-++|.+++++. ..-|. ...+..-
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2245688899999999999999999999999776 67788999999999999999999998764 33333 4446677
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
.+..-.++|+.++|+.+++-++.-.|.-...|..++++-.+.|..+.+.++|++....++
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 777788999999999999999999999999999999999999999999999999988765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-05 Score=73.97 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=121.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCC
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGM 625 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~ 625 (882)
+..|.+.|+++......+.+..|. ..|...++.++++..+++.++.+ +.|...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCC
Confidence 567888888887765554433221 01223567788888899988864 4456778888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHh-hccCC--HHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHH
Q 002772 626 VSEGMDLFYKMKDDYGIEP-SPDHYACVVDLL-GRAGK--VEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEI 700 (882)
Q Consensus 626 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l-~r~g~--~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~ 700 (882)
+++|...|++..+. .| +...+..+..++ .+.|+ .++|.+++++. ...|+...++..|..++...|+.+.|+.
T Consensus 89 ~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988853 44 677888888864 67777 59999999876 5678887799999999999999999999
Q ss_pred HHHHHhcCCCCCCchHHHH
Q 002772 701 AAQNLFLLEPDVASHYVLL 719 (882)
Q Consensus 701 ~~~~~~~l~p~~~~~~~~l 719 (882)
.+++++++.|.+..-+..+
T Consensus 166 ~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 166 LWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHhhCCCCccHHHHH
Confidence 9999999998776554433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00053 Score=74.48 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=169.1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC--cchHhh-HHHhhcCcchHHHHHHHHHHH
Q 002772 454 SWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN--SITLMT-VLPGCGALSALAKGKEIHAYA 530 (882)
Q Consensus 454 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~--~~t~~~-ll~a~~~~~~~~~a~~i~~~~ 530 (882)
.|..+...+...|+.+++.+.+.+..+ ..+++ ...... ....+...|+++.+..++..+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQ------------------ALAARATERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHH------------------HhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566677777888888777777765 22222 211111 122455678999999999998
Q ss_pred HHhcCCCchhHHH---HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 002772 531 IRNMLATDVVVGS---ALVDMYAKCGCLNFARRVFDLMPV--RN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGG 604 (882)
Q Consensus 531 ~~~g~~~~~~~~~---~li~~y~k~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 604 (882)
.+.. +.+...+. .+.......|..+.+.+.+..... |+ ...+..+...+...|++++|++.+++.++..
T Consensus 70 l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---- 144 (355)
T cd05804 70 LDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---- 144 (355)
T ss_pred HHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 8764 33443443 222222335667777777765332 22 2344455667889999999999999999954
Q ss_pred cccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHhhccCCHHHHHHHHHhCC-CCCCchh
Q 002772 605 EVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP--DHYACVVDLLGRAGKVEDAYQLINMMP-PEFDKAG 680 (882)
Q Consensus 605 ~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~~~~ 680 (882)
|+ ...+..+...+...|++++|..++++........|+. ..|..+...+...|++++|..++++.. ..|...
T Consensus 145 ---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~- 220 (355)
T cd05804 145 ---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD- 220 (355)
T ss_pred ---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC-
Confidence 55 4567778888999999999999999988642222332 345678899999999999999999862 233112
Q ss_pred hHH------HHHHHHHhcCchhHHHHH---HHHHhcCCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 681 AWS------SLLGACRIHQNVEIGEIA---AQNLFLLEPD--VASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 681 ~~~------~ll~a~~~~~~~~~a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+. .++.-+...|..+.+.+. ........|. ....-...+..+...|++++|..+++.++...
T Consensus 221 ~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 221 PALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 222 334444555655444444 2222221122 12222367778889999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-05 Score=85.87 Aligned_cols=190 Identities=16% Similarity=0.177 Sum_probs=162.3
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHH
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTF 613 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~ 613 (882)
+++|-...-..+.+.+.++|-..+|..+|++. ..|...|.+|...|+..+|.++..+-++. +||+.-|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhH
Confidence 35566667777899999999999999999985 47888999999999999999999988873 6999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHh-CCCCCCchhhHHHHHHHHHhc
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINM-MPPEFDKAGAWSSLLGACRIH 692 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~-m~~~p~~~~~~~~ll~a~~~~ 692 (882)
..+.+.....-.+++|+++++....+ .-..+.....+.++++++.+.++. +..+|-..++|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 99999998888899999998876543 112222334457999999998874 577888888999999999999
Q ss_pred CchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 693 QNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 693 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
++.+.+..+|...+.++|++...++.|+..|.+.|+-.+|...+++..+-+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999998876655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00022 Score=88.09 Aligned_cols=360 Identities=11% Similarity=0.014 Sum_probs=219.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHH----hHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHH
Q 002772 356 MITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVV----PACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMY 431 (882)
Q Consensus 356 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 431 (882)
....+...|++.+|+..+... +|......++ ......|+++.....+..+.......+..........+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 344566677777777655443 1111111111 22334456655555554432111122233334445556
Q ss_pred HhcCChHHHHHHHhhCC----CCC---eee-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccC
Q 002772 432 SRMGRIEISKTIFDDME----VRD---TVS-----WNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 432 ~~~g~~~~A~~~~~~m~----~~~---~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
...|++++|...++... ..+ ... ...+...+...|++++|...+++... .
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~ 481 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA------------------E 481 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------c
Confidence 77899999888887653 111 111 11222345678999999999999875 1
Q ss_pred CCCCc-----chHhhHHHhhcCcchHHHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 002772 500 PKPNS-----ITLMTVLPGCGALSALAKGKEIHAYAIRNMLA-----TDVVVGSALVDMYAKCGCLNFARRVFDLMP--- 566 (882)
Q Consensus 500 ~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--- 566 (882)
...+. .....+...+...|+++.|...+.......-. ........+...+...|++++|...+++..
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11111 22344445567789999999998877643111 123355667778889999999999887654
Q ss_pred ----CCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 567 ----VRN----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 567 ----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
.++ ...+..+...+...|++++|.+.+++....... ..|. ...+..+.......|+.++|...++.+
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN---YQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc---cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 223445555667789999999999998764200 1222 233444556677889999999999888
Q ss_pred HHhcCCCCChhHH-----HHHHHHhhccCCHHHHHHHHHhCCCC--CCch---hhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 637 KDDYGIEPSPDHY-----ACVVDLLGRAGKVEDAYQLINMMPPE--FDKA---GAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 637 ~~~~~~~p~~~~~-----~~li~~l~r~g~~~eA~~~~~~m~~~--p~~~---~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
............+ ......+...|+.++|.+++...... .... ..+..+..++...|+.+.|...+++++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6531111111111 11224455689999999998765321 1111 014566677888899999999999988
Q ss_pred cCCC------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 707 LLEP------DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 707 ~l~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+... +....+..++.+|...|+.++|...+.+..+..
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7532 223467789999999999999999998876644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.012 Score=62.60 Aligned_cols=427 Identities=11% Similarity=0.109 Sum_probs=224.3
Q ss_pred hhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhH
Q 002772 210 LRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFED--R-DLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSI 286 (882)
Q Consensus 210 ~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 286 (882)
++..+.|...|+.||.-+... .+++++++++++.. | ....|..-|.+-....+++....+|.+.+..-...|..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW-- 89 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW-- 89 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH--
Confidence 344478899999999988766 99999999999875 3 45679999999999999999999999988765544443
Q ss_pred hhHHHHhcc-CCChhH----HHHHHHHHHH-hCCCCC-chhHHHHHHHHh---------hcCCChHHHHHHHhccCCCCc
Q 002772 287 ASVLPACSH-LEMLDT----GKEIHAYALR-NDILID-NSFVGSALVDMY---------CNCREVECGRRVFDFISDKKI 350 (882)
Q Consensus 287 ~~ll~a~~~-~~~~~~----a~~~~~~~~~-~g~~~~-~~~~~~~Li~~y---------~~~g~~~~A~~~f~~m~~~~~ 350 (882)
..-|.-..+ .++... -.+.|+..+. .| .++ .-..|+..+... ....+++..++++.++.....
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 222322221 122222 2234444443 33 322 233455555433 334566777788887754311
Q ss_pred e----ehHH------HHHHH-------hcCCChHHHHHHHHHHHH-HcCCCCCcch---------------HhhHHhHhh
Q 002772 351 A----LWNA------MITGY-------GQNEYDEEALMLFIKMEE-VAGLWPNATT---------------MSSVVPACV 397 (882)
Q Consensus 351 ~----~~~~------li~~~-------~~~g~~~~A~~l~~~m~~-~~g~~p~~~t---------------~~~ll~~~~ 397 (882)
. .|+- =|+.. -+...+..|.+++++... ..|..-+..+ +..+|.- -
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-E 247 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-E 247 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-H
Confidence 1 1221 11111 123345667777777611 1233222222 1111111 1
Q ss_pred cCCCCc-c--------hhhHHHHHH-HhCCCCchHHH-----HHHHHHHHhcCCh-------HHHHHHHhhCCCC----C
Q 002772 398 RSEAFP-D--------KEGIHGHAI-KLGLGRDRYVQ-----NALMDMYSRMGRI-------EISKTIFDDMEVR----D 451 (882)
Q Consensus 398 ~~~~~~-~--------a~~~~~~~~-~~g~~~~~~~~-----~~Li~~y~~~g~~-------~~A~~~~~~m~~~----~ 451 (882)
+.+.+. + ..-++++.+ -.++.|++... ...-+.+...|+. +++.++++....- +
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 0 011122221 22344433211 1111233334433 2333333332211 1
Q ss_pred eeeHHHHHHHH---HhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHH
Q 002772 452 TVSWNTMITGY---TICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHA 528 (882)
Q Consensus 452 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 528 (882)
..+|..+..-= ....+.+.....+.+.... . ..+|+ .+|...++..-+..-++.|+.+|.
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~--~--------------~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKI--E--------------DIDLT-LVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh--h--------------ccCCc-eehhHHHHHHHHhhhHHHHHHHHH
Confidence 11111111100 0001233334444444331 0 23333 345566666666777777777777
Q ss_pred HHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 002772 529 YAIRNMLAT-DVVVGSALVDMYAKCGCLNFARRVFDLMP--VRNVITW-NVIIMAYGMHGEGQEVLELLKNMVAEGSRGG 604 (882)
Q Consensus 529 ~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 604 (882)
.+.+.+..+ +++++++++.-|| .++.+-|.++|+--. -+|...| +..+.-+...|+-..|-.+|++.+..+
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~---- 465 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV---- 465 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc----
Confidence 777766665 7777777777776 466777777777544 3344333 344555566677777777777777765
Q ss_pred cccCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHhhccCCHHH
Q 002772 605 EVKPNE--VTFIALFAACSHSGMVSEGMDLFYKMKDDYG--IEPSPDHYACVVDLLGRAGKVED 664 (882)
Q Consensus 605 ~~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~l~r~g~~~e 664 (882)
+.||. ..|..+|.-=+.-|++..+.++-+++...+. ..|...+-..+++.|+=.++...
T Consensus 466 -l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 466 -LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred -CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 56653 4677777777777777777777777666544 44444455555666655554433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.9e-05 Score=77.43 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHG-EGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFA 618 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~ 618 (882)
.+-..+.+.++.++|..+.+++. +.+..+|+.....+...| +++++++.++++++.+ |+ ..+|..-..
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------pknyqaW~~R~~ 114 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-------CcchHHhHHHHH
Confidence 34444566788899999998876 335667887767777777 5799999999999865 44 445665544
Q ss_pred HHhccCC--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhc---
Q 002772 619 ACSHSGM--VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIH--- 692 (882)
Q Consensus 619 a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~--- 692 (882)
.+.+.|. .+++..+++.+.+. -+-+...|+...-++.+.|++++|++.++++ ...|++..+|+.....+...
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 5555565 36788899888853 2335777888888888999999999999987 45677777999988777654
Q ss_pred Cch----hHHHHHHHHHhcCCCCCCchHHHHHHHHHHc----CCchHHHHHHHHH
Q 002772 693 QNV----EIGEIAAQNLFLLEPDVASHYVLLSNIYSSA----QLWDKAMDVRKKM 739 (882)
Q Consensus 693 ~~~----~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m 739 (882)
|.. +......+++++++|+|.++|..+..+|... ++..+|.+...+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 222 4567777899999999999999999999873 3445666666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.9e-05 Score=71.58 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=85.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 575 VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 575 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
.+-..+...|+.+..+.+..+..... .-|.......+......|++.+|...|.+... .-++|...|+.+.-
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 34444555555555555555443321 11222333355555556666666666666554 44455566666666
Q ss_pred HhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHH
Q 002772 655 LLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 733 (882)
.|.+.|++++|..-|.+. ...|+.+.+.++|...+...|+.+.|+..+.++....+.++.+-..|.-+....|++++|.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 666666666665544433 3445544466666666666666666666666666666666666666666666666666665
Q ss_pred HH
Q 002772 734 DV 735 (882)
Q Consensus 734 ~~ 735 (882)
++
T Consensus 223 ~i 224 (257)
T COG5010 223 DI 224 (257)
T ss_pred hh
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.8e-05 Score=76.49 Aligned_cols=182 Identities=13% Similarity=0.005 Sum_probs=127.7
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-hh---hHHH
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRNMLAT--DVVVGSALVDMYAKCGCLNFARRVFDLMP--VRN-VI---TWNV 575 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~-~~---~~~~ 575 (882)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++. .|+ .. +|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456666778889999999999999988764321 12466778899999999999999999987 343 32 4555
Q ss_pred HHHHHHcc--------CChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 576 IIMAYGMH--------GEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 576 li~~~~~~--------g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
+..++.+. |+.++|++.|+++.. ..|+..-....+..... ... ... .
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~a~~~~~~---~~~------~~~---------~ 167 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR-------RYPNSEYAPDAKKRMDY---LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH-------HCCCChhHHHHHHHHHH---HHH------HHH---------H
Confidence 66666666 788999999999988 68876432211111100 000 000 1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC----CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMM----PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
....+.+.+.+.|++++|...+++. |..|....+|..+..++...|+.+.|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1234667788899999998888765 33454455888999999999999999998887766655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0001 Score=85.86 Aligned_cols=226 Identities=16% Similarity=0.126 Sum_probs=127.4
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc-----hHhhHHHhhcCcchHHHHHHH
Q 002772 452 TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI-----TLMTVLPGCGALSALAKGKEI 526 (882)
Q Consensus 452 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~-----t~~~ll~a~~~~~~~~~a~~i 526 (882)
.+.|-..|.-..+.++.++|.+++++.+. .+.+... .|.++++.--.-|.-+...++
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~------------------tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALK------------------TINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhh------------------hCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 44566666666666667777777666665 2322211 122222222222233334444
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 002772 527 HAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRG 603 (882)
Q Consensus 527 ~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 603 (882)
|.++.+.. ....+|..|...|.+.++.++|-++|+.|. ......|...+..+.++.+.+.|-+++++.++.
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---- 1593 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---- 1593 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh----
Confidence 44444332 123466677777777777777777777776 234566777777777777777777777777763
Q ss_pred CcccCC--hhHHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC---CCCC
Q 002772 604 GEVKPN--EVTFIALF-AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP---PEFD 677 (882)
Q Consensus 604 ~~~~pd--~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~---~~p~ 677 (882)
-|- ++-|.+-. ..-.+.|+.+.|+.+|+..... .+-..+.|+.++++=.+.|..+.+..+|++.- ..|.
T Consensus 1594 ---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1594 ---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred ---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 343 33333222 2224567777777777777663 23345667777777777777777777776541 1111
Q ss_pred c-hhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 678 K-AGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 678 ~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
. ...+.-.|..-..|||-+..+.+-.++.
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1145555555566666555555544433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.6e-05 Score=85.51 Aligned_cols=190 Identities=10% Similarity=0.046 Sum_probs=143.8
Q ss_pred cchHhhHH-HhhcCcchHHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHH
Q 002772 504 SITLMTVL-PGCGALSALAKG-KEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP------VRNVITWNV 575 (882)
Q Consensus 504 ~~t~~~ll-~a~~~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~------~~~~~~~~~ 575 (882)
..|...++ .+.+..|..+++ .++++++.+ ...+.|.+..+..-+-+.. ..++..+-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVL 91 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHH
Confidence 33444444 456777776655 666666542 2233333333332222221 345788888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
|.....+.|++++|+.+++...+ +.||. ..+..+...+.+.+++++|+..+++... .-+-+..+...+..
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~-------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~ 162 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ-------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 88999999999999999999999 66885 4677888899999999999999999986 23335778888999
Q ss_pred HhhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHH
Q 002772 655 LLGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
++.+.|++++|.++|++.- ..|+...+|-++..++...|+.+.|..+|+++++...+-...|.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999999999874 56777779999999999999999999999999998765545433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-05 Score=72.12 Aligned_cols=136 Identities=14% Similarity=0.033 Sum_probs=114.3
Q ss_pred ccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHH
Q 002772 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSS 684 (882)
Q Consensus 606 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ 684 (882)
..|+......+-.++...|+-+....+...... ...-+......++....+.|++.+|...+.+. ...|++...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 346533336667778888998888888877654 33445566667999999999999999999887 456777779999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+..+|-+.|+++.|+..+.+++++.|.++.++..|+..|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=83.19 Aligned_cols=143 Identities=6% Similarity=-0.027 Sum_probs=113.2
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
.+..+...+-.|.......|.+++|..+++... .| +...+..++..+.+.+++++|+..+++.+.. .|+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-------~p~~ 153 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-------GSSS 153 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-------CCCC
Confidence 355668888889999999999999999999876 44 5667788889999999999999999999985 4876
Q ss_pred hH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCC--CCCCchhhHHHHH
Q 002772 611 VT-FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMP--PEFDKAGAWSSLL 686 (882)
Q Consensus 611 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~~ll 686 (882)
.+ ...+..++.+.|.+++|..+|+++.. ..+-+...+..+..+|-+.|+.++|...|++.- ..|... .++.++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~-~~~~~~ 229 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR-KLTRRL 229 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH-HHHHHH
Confidence 55 45555667889999999999999986 333347788899999999999999999998762 334443 444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00068 Score=71.34 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGE 699 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~ 699 (882)
...|..++|+..++.+.. ..+-|+.......+.+.+.++.++|.+.++++ ...|+..-.|-++..++.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 345666777777766654 23334445555666677777777777766655 345554436666666777777777777
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 700 IAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 700 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
...+..+.-+|+|+..|..|+..|...|+-.+|...+.++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777777777777777777777666666666655555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=78.02 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=159.0
Q ss_pred hcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHH
Q 002772 397 VRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALM 473 (882)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 473 (882)
.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+- |....-+|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35566777777777777765 556677777877778888877788888777643 45556667778999999999999
Q ss_pred HHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhc
Q 002772 474 LLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAI-RNMLATDVVVGSALVDMYAKC 552 (882)
Q Consensus 474 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~y~k~ 552 (882)
.++.-+... ....+... -.++..+-.. ........+....++|-.+. ..+...|+.++..|.-.|--.
T Consensus 375 ~L~~Wi~~~----p~y~~l~~-----a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 375 MLDKWIRNK----PKYVHLVS-----AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHhC----ccchhccc-----cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 999876510 00000000 0001000000 22333344455555555554 455568889999999999999
Q ss_pred CCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHH
Q 002772 553 GCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSE 628 (882)
Q Consensus 553 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~ 628 (882)
|++++|...|+... +-|...||-|...++...+.++|++.|++.++ ++|+- .....|.-+|...|.+++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-------LqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-------LQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-------cCCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999876 44788999999999999999999999999999 77984 355667778999999999
Q ss_pred HHHHHHHhHH
Q 002772 629 GMDLFYKMKD 638 (882)
Q Consensus 629 a~~~~~~m~~ 638 (882)
|.+.|-..+.
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 9998877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=69.87 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
......+...+...|++++|.+.++.. ...|+....|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455666777777888888888888765 3467666688888889999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 002772 725 SAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 725 ~~g~~~~a~~~~~~m~~~ 742 (882)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999998876664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00043 Score=72.78 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=116.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHH-HHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALF-AACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYA 650 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 650 (882)
+-.....+...|++++|+..++.++.. .||..-|..+. ..+...++.++|.+.++.+... .|+ ....-
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~ 378 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHH
Confidence 333344455679999999999998884 58777666554 4578999999999999999854 566 55666
Q ss_pred HHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCc
Q 002772 651 CVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 729 (882)
.+.++|.+.|+..+|..+++.. ...|+++..|..|..+|...|+..++..+ .+..|+-.|+|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~ 441 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRL 441 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCH
Confidence 7889999999999999999876 45688887999999999999998766665 46778899999
Q ss_pred hHHHHHHHHHHhCC
Q 002772 730 DKAMDVRKKMKEMG 743 (882)
Q Consensus 730 ~~a~~~~~~m~~~g 743 (882)
++|.......+++.
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5e-06 Score=55.06 Aligned_cols=35 Identities=34% Similarity=0.643 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCh
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDG 283 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (882)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.2e-06 Score=54.98 Aligned_cols=35 Identities=40% Similarity=0.746 Sum_probs=33.1
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh
Q 002772 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSS 180 (882)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 180 (882)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00053 Score=66.88 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHhhCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHH
Q 002772 552 CGCLNFARRVFDLMP-VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGM 630 (882)
Q Consensus 552 ~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~ 630 (882)
.|++..+..+.++.+ +.+..+.+......-+.|++++|++-|+...+-+. ..| ...|+.-+.- .+.|+.+.|+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG----yqp-llAYniALaH-y~~~qyasAL 198 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG----YQP-LLAYNLALAH-YSSRQYASAL 198 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC----CCc-hhHHHHHHHH-HhhhhHHHHH
Confidence 455566666666665 34445555444445566777777777777666430 222 3344444433 3446667777
Q ss_pred HHHHHhHHhcCCC-------------CC--------hhHHHHHHHHh-------hccCCHHHHHHHHHhCCC----CCCc
Q 002772 631 DLFYKMKDDYGIE-------------PS--------PDHYACVVDLL-------GRAGKVEDAYQLINMMPP----EFDK 678 (882)
Q Consensus 631 ~~~~~m~~~~~~~-------------p~--------~~~~~~li~~l-------~r~g~~~eA~~~~~~m~~----~p~~ 678 (882)
++..++.++ |++ || .-|-+.++.++ -+.|+++.|.+-+-.||. +-|.
T Consensus 199 k~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 199 KHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred HHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 766666664 543 11 22344555443 477899999999998862 2333
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 679 AGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 679 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
. ..-.+.-. -..++.-.+.+-.+-+++++|--+.++..+.-+|++..-++-|.+++.+
T Consensus 278 v-TLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 278 V-TLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred h-hhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3 33332211 2234555566667778888997778888888899999999988887763
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.8e-05 Score=79.32 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=100.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHh
Q 002772 613 FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRI 691 (882)
Q Consensus 613 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~ 691 (882)
..+|+..+...+++++|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...|.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777778888888888888765 244 4555777777788888888888765 4466666577777777899
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
.++.+.|..+++++.++.|++...|..|+.+|.+.|+|++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0013 Score=63.19 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVI---IMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
|..+.-+...+|+.+.|...++++..+-.-++..+ ..-+-..|++++|+++|+..++.+ +-|.+++.-=+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd------pt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD------PTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC------cchhHHHHHHHH
Confidence 33444455567778888877777652111222111 112345688999999999999876 445677776666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC---c
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ---N 694 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~---~ 694 (882)
..-..|+--+|++-+....+ .+..|.+.|.-+.++|...|.++.|.-.++++ -..|-++-....+...+...| |
T Consensus 129 ilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 66667777788888888887 56778999999999999999999999888887 356666645566666554444 8
Q ss_pred hhHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 002772 695 VEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
.+.+...+++++++.|.+. ..+..+|..
T Consensus 207 ~~~arkyy~~alkl~~~~~---ral~GI~lc 234 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNL---RALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHhChHhH---HHHHHHHHH
Confidence 8999999999999999654 344444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.4e-05 Score=52.50 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=32.2
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002772 145 QVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEP 178 (882)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (882)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.9e-05 Score=51.84 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 002772 248 LVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKP 281 (882)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (882)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0019 Score=75.23 Aligned_cols=232 Identities=10% Similarity=0.019 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCC--CCC-eeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccc
Q 002772 420 DRYVQNALMDMYSRMGRIEISKTIFDDME--VRD-TVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDET 496 (882)
Q Consensus 420 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (882)
+...+..|+..|...+++++|.++.+... .|+ ...|-.+...+.+.++..++..+ .+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------- 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------- 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh----------------
Confidence 34556667777777777777777766443 232 23333333355556665555544 3322
Q ss_pred ccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhH
Q 002772 497 VLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITW 573 (882)
Q Consensus 497 ~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~ 573 (882)
..+ ...++.....++..+.+.+ .+...+-.|..+|-+.|+.++|..+++++. ..|....
T Consensus 92 ---~~~-------------~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 92 ---SFS-------------QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred ---hcc-------------cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHH
Confidence 111 1111111122222222211 123345556666666666666666666655 3355566
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV 653 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 653 (882)
|.+...|+.. +.++|++++.+.+.. +...+++.++.++|.++.. ...-+...+-.+.
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~--------------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~ 210 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR--------------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIE 210 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH--------------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHH
Confidence 6666666666 666666666665542 2333455555555555553 1111222222111
Q ss_pred HHhhcc-CCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 002772 654 DLLGRA-GKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 654 ~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
...... | ...+ .. .|.-|-..|+...+.+.+..+++.+++.+|+|..+..-|+..|.
T Consensus 211 ~ki~~~~~-~~~~------------~~-~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHRE-FTRL------------VG-LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhc-cchh------------HH-HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 111111 1 1111 11 33444444555556666666666666666666666665555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.061 Score=57.59 Aligned_cols=211 Identities=13% Similarity=0.111 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCC----CCChhhHHHHHHHHHccCChhHHHHHH
Q 002772 521 AKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG---CLNFARRVFDLMP----VRNVITWNVIIMAYGMHGEGQEVLELL 593 (882)
Q Consensus 521 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 593 (882)
+++..++...+..-...+..+|.++.+-=-..- ..+.....+++.. ..-..+|-..++.-.+..-...|-.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555655554433334444444432211111 1333334444433 222356777888777777789999999
Q ss_pred HHHHHcCCCCCcccC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 594 KNMVAEGSRGGEVKP-NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 594 ~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
.+..+.+ ..+ +.....+++.-++ .++.+-|..+|+.-.++||-. ..--.+.++-|.+-++-..|..+|++.
T Consensus 390 ~kaR~~~-----r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 390 KKAREDK-----RTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHhhcc-----CCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 9999988 677 4556666776655 488899999999988765443 344567889999999999999999987
Q ss_pred CCC---CC-chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC----chHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 673 PPE---FD-KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA----SHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 673 ~~~---p~-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
... |+ ...+|..++.--...||++....+-++-...-|.+. ..-.++...|.-.+.+..-.+-++.|
T Consensus 462 l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 462 LTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 322 22 123999999999999999999999888777666221 12334556666666665544444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=65.03 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=89.9
Q ss_pred HHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHH
Q 002772 592 LLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 592 l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
+|++.+. ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...+.+.|++++|...++
T Consensus 5 ~~~~~l~-------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLG-------LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHc-------CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655 34554 44556667778889999999999888763 23467788888888889999999998887
Q ss_pred hC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch
Q 002772 671 MM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 671 ~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
+. ...|+....|..+...+...|+.+.|...++++++++|++...
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 65 4567766688888899999999999999999999999987654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00061 Score=72.64 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH
Q 002772 540 VVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA 619 (882)
Q Consensus 540 ~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a 619 (882)
..-.+|+..+...++++.|..+|+++...+...+-.|+..+...++-.+|++++++.++.. +-|...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 3445566777778999999999999986666666678888888899999999999999754 2244455555566
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhCCCCC
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMMPPEF 676 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p 676 (882)
|...++.+.|+++.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 244 Ll~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8899999999999999985 3565 6699999999999999999999999998544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00037 Score=68.73 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=72.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHH
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
.+.+++.+|+..|...++ +.|+ ..-|..=..+|.+.|.+++|++=.+.. .+.|.....|..|..++...|+.++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 456777777777777763 4554 334444466777777777777666543 56777777999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHH
Q 002772 699 EIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 699 ~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
+++|+++++++|++..+...|..
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999999998865544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0085 Score=58.15 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=96.2
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC
Q 002772 529 YAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP 608 (882)
Q Consensus 529 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p 608 (882)
.+.......+......-...|.+.|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+-.
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id-------- 167 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQID-------- 167 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc--------
Confidence 3333333333333333345677788888888887774322333222 233445566777888888887632
Q ss_pred ChhHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHH
Q 002772 609 NEVTFIALFAACSH----SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWS 683 (882)
Q Consensus 609 d~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 683 (882)
+..|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+.+..+....|+++||..++++. ...++.+.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 45566655555432 3457777777777775 34566666666666666666666666666654 22334343444
Q ss_pred HHHHHHHhcC-chhHHHHHHHHHhcCCCCC
Q 002772 684 SLLGACRIHQ-NVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 684 ~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~ 712 (882)
.++..-...| +.+.-++...++....|..
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 4444333333 4455555555566566654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.1e-05 Score=48.46 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 002772 249 VSWNTIVSSLSQNDKFLEAVMFLRQMALRGI 279 (882)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 279 (882)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0014 Score=60.41 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE----VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-- 646 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-- 646 (882)
|..++..+ ..++...+.+.++++.... |+. .....+...+...|++++|...|+..... ...|+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~ 85 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKP 85 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHH
Confidence 34444554 3677788888888888754 443 23334456677788888888888888775 322221
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhCC
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMMP 673 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m~ 673 (882)
...-.|..++...|++++|+..++..+
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 233445677777888888888876653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.6e-05 Score=48.70 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=28.5
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 002772 146 VSWNSMIATLCRFGKWDLALEAFRMMLYSNV 176 (882)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (882)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00046 Score=73.98 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=39.5
Q ss_pred ccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 002772 658 RAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVR 736 (882)
Q Consensus 658 r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 736 (882)
+.|++++|++.+++. ...|+....|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|...+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334444444444332 2334444344444444555555555555555555555555555555555555555555555544
Q ss_pred HHHH
Q 002772 737 KKMK 740 (882)
Q Consensus 737 ~~m~ 740 (882)
++..
T Consensus 94 ~~al 97 (356)
T PLN03088 94 EKGA 97 (356)
T ss_pred HHHH
Confidence 4433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0005 Score=57.60 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=73.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
+..+...+.+.|++++|.+++++. ...|+...+|..+...+...++.+.|...++.++...|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877764 3445554477788888888899999999999999999988888889999999999
Q ss_pred CchHHHHHHHHHHh
Q 002772 728 LWDKAMDVRKKMKE 741 (882)
Q Consensus 728 ~~~~a~~~~~~m~~ 741 (882)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988876654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.28 Score=56.03 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=66.8
Q ss_pred HHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHH
Q 002772 227 YAKLGRVDDAKTLFKSFED---RDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGK 303 (882)
Q Consensus 227 y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 303 (882)
..+.|+.++|..+++.... .|..|..++-..|...++.++|..+|++.... -|+......+..++.+.+++.+-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888887776543 36777888888888888888888888887654 566667777777777777766655
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHh
Q 002772 304 EIHAYALRNDILIDNSFVGSALVDMY 329 (882)
Q Consensus 304 ~~~~~~~~~g~~~~~~~~~~~Li~~y 329 (882)
++--++.+. ++...+.+=+.++.+
T Consensus 131 kaa~~LyK~--~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 131 KAALQLYKN--FPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHh--CCcccchHHHHHHHH
Confidence 544444443 455555544444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.12 Score=53.17 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=172.4
Q ss_pred cCChHHHHHHHhhCC---CCCeeeHHHHHH--HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHh
Q 002772 434 MGRIEISKTIFDDME---VRDTVSWNTMIT--GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLM 508 (882)
Q Consensus 434 ~g~~~~A~~~~~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~ 508 (882)
.|+-..|+++-.+.. ..|....-.++. +-.-.|++++|.+-|+-|.. .-..-...+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLR 158 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLR 158 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHH
Confidence 455555555544332 223322222322 22336788888888888875 1111222333
Q ss_pred hHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhh--HHHHHHHHH
Q 002772 509 TVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVIT--WNVIIMAYG 581 (882)
Q Consensus 509 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~--~~~li~~~~ 581 (882)
.|.-.--+.|+.+.|++.-...-..-. .-...+.++++..+..|+++.|+++.+.-. .+|+.- --.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 444445567777777777666654432 234567788999999999999999998654 455422 122332221
Q ss_pred ---ccCChhHHHHHHHHHHHcCCCCCcccCChhH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 002772 582 ---MHGEGQEVLELLKNMVAEGSRGGEVKPNEVT-FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG 657 (882)
Q Consensus 582 ---~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~ 657 (882)
-.-+...|.+.-.+..+ +.||-+. -..-..++.+.|++.++-.+++.+-+. .|.+.....+++ .
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K-------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~~--a 305 (531)
T COG3898 238 MSLLDADPASARDDALEANK-------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYVR--A 305 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh-------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHHH--h
Confidence 12346666666666665 6788654 334456789999999999999999754 677766654443 4
Q ss_pred ccCCHH--HHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHc-CCchHHHH
Q 002772 658 RAGKVE--DAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA-QLWDKAMD 734 (882)
Q Consensus 658 r~g~~~--eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~ 734 (882)
|.|+.. .....-+--..+|++....-++..+-...|++..|...++.+...+|. .++|.+|.++-... |+-+++..
T Consensus 306 r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 306 RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHH
Confidence 555432 221111111347888767777788888999999999999999999996 57788999987766 88777766
Q ss_pred HHHH
Q 002772 735 VRKK 738 (882)
Q Consensus 735 ~~~~ 738 (882)
...+
T Consensus 385 wlAq 388 (531)
T COG3898 385 WLAQ 388 (531)
T ss_pred HHHH
Confidence 5553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0025 Score=58.69 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=91.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCCCC-CCch---hhHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMPPE-FDKA---GAWSSLL 686 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~-p~~~---~~~~~ll 686 (882)
.|..++.++ ..++...+...++.+.+.++-.| .....-.+...+...|++++|.+.++..... |+.. .++-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 37888899999999988643332 1334445668888999999999999987422 3321 1455677
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
..+...|+.+.|...++.. .-.+-.+..+.+++++|.+.|++++|...+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8889999999999999763 34445567888999999999999999998875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.029 Score=65.78 Aligned_cols=175 Identities=12% Similarity=0.048 Sum_probs=110.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
+..+....++.-...++..| . ...-+...+..+..+|.+.|+.+++..+++.+++.. +.|..+.|-+...|+.. +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i-~--~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKI-L--LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHH-H--hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 33334444443333344444 2 133334466667777777788888888888888777 66778888888888888 8
Q ss_pred hHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcC
Q 002772 437 IEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGA 516 (882)
Q Consensus 437 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~ 516 (882)
+++|..++... +..|...+++.++.+++.++.. ..|+.+.+
T Consensus 165 L~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~-------------------~~~~d~d~--------- 205 (906)
T PRK14720 165 KEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH-------------------YNSDDFDF--------- 205 (906)
T ss_pred HHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh-------------------cCcccchH---------
Confidence 99998887764 3447777888899999999886 23333222
Q ss_pred cchHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHH
Q 002772 517 LSALAKGKEIHAYAIRN-MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYG 581 (882)
Q Consensus 517 ~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 581 (882)
-.++.+.+... |..--..++-.|-..|-+..+++++..+|+.+. +.|.....-++..|.
T Consensus 206 ------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 206 ------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11222222221 333334455566677777888888888888776 345555666666665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=57.54 Aligned_cols=61 Identities=11% Similarity=-0.084 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDV---ASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+..+..++...|+.+.|...++.++...|++ +.++..++.+|...|++++|.+.++++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3344444555555555555555555554443 234455555555555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00044 Score=53.42 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+...+...|+++.|+..++.+++.+|+++.++..++.++...|++++|..++++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888888888888888888888877553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=70.03 Aligned_cols=107 Identities=15% Similarity=0.055 Sum_probs=80.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
..+...|++++|++.|+++++. -+-+...|..+..+|.+.|++++|+..+++. ...|+...+|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445567777777777777753 2224566777777778888888888877765 456777768888888999999999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHc
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSA 726 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 726 (882)
.|...++++++++|+++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988887776664443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=56.93 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVR-NVITWNVIIMAYGM----HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~ 620 (882)
+..+.|..+++-|.+.++.|.+- +..+.+.|..++.+ .++..+|.-+|++|-++ ..|+..+.+....++
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHH
Confidence 34455667777777777777743 34555556555543 34577788888888765 467777888888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHH-HHHHhC
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAY-QLINMM 672 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~-~~~~~m 672 (882)
...|++++|..+++....+ -.-++++...+|-+-.-.|+-.++. +.+.+.
T Consensus 218 l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 8888888888888887764 2334555655555555555554443 344443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=60.13 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=77.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDH 648 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 648 (882)
.+..+...|...|++++|+..|++.+... ..|+ ...+..+...+.+.|++++|...+++..+. .| +...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 108 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSA 108 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHH
Confidence 35556666777777777777777777643 2221 245666666677777777777777777653 23 3445
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+..+..++...|+...|..-.... ....+.|...++++++++|++ |..+.+.+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A-------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEA-------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHH-------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555556666666555443222210 112567888888999999977 5555555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00037 Score=54.63 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ-LWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 741 (882)
+|..++..+...|+.+.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999 79999998887654
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00085 Score=66.29 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=79.2
Q ss_pred HHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchH
Q 002772 653 VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 653 i~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
.+-+.+.+++++|+..+.+. ...|.++..+..-..+|.+.|..+.|.+.++.++.++|..+.+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35567889999999999875 67888875778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002772 732 AMDVRKKMKE 741 (882)
Q Consensus 732 a~~~~~~m~~ 741 (882)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999885544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=59.25 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.|-.+..++...|+.+.|..++++ .+.+|.++.....++.+|.+.|+|++|.+++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 566667777777777777777777 666776767777889999999999999988774
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.003 Score=55.82 Aligned_cols=103 Identities=13% Similarity=0.050 Sum_probs=58.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhCC-CCCC---chhhHHHHHHH
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMMP-PEFD---KAGAWSSLLGA 688 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~---~~~~~~~ll~a 688 (882)
..+...+...|++++|.+.|+.+...+.-.| ....+..+..++.+.|++++|.+.++.+. ..|+ ...+|..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3334444445555555555555554311111 12334445555666666666666555441 1222 22367777777
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 689 CRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 689 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
+...|+.+.|...++++++..|+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0004 Score=53.69 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 002772 652 VVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA 713 (882)
Q Consensus 652 li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 713 (882)
+...+.+.|++++|.+.+++. ...|+...+|..+..++...|+.+.|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677788888888888876 45688888999999999999999999999999999999874
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00013 Score=47.35 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=30.6
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHcCCchHHH
Q 002772 702 AQNLFLLEPDVASHYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 702 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 733 (882)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.034 Score=60.39 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCC
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGM 625 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~ 625 (882)
..|+...|+.+.|..+. +.+|-.+-++++-+++- +.+..+...+..-+.+...
T Consensus 710 AEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld---------~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLD---------KAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred HHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcc---------hhhhhHHHHHHHHHhhccc
Confidence 45555666666665443 34455555555555442 2334455555555666677
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCC-CCCchhhHHHHHHHHHhcCchhHHHHHHHH
Q 002772 626 VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPP-EFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704 (882)
Q Consensus 626 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~-~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~ 704 (882)
+.-|.++|.+|-. ...++++....++++||..+-++.|. .|+ ++.-...-.....++++|.++
T Consensus 763 ~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkA--- 826 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKA--- 826 (1081)
T ss_pred cchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHH---
Confidence 7888889988854 35688999999999999999998863 333 222333333444455555544
Q ss_pred HhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 705 LFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 705 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
|.++|+-.||.++++++....
T Consensus 827 ------------------fhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 827 ------------------FHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ------------------HHHhcchHHHHHHHHHhhhhh
Confidence 456667677777777665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0022 Score=63.94 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=91.8
Q ss_pred CCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC---chhHHHHHHHHHhcCCCCCCchHHH
Q 002772 643 EPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ---NVEIGEIAAQNLFLLEPDVASHYVL 718 (882)
Q Consensus 643 ~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~l~p~~~~~~~~ 718 (882)
+-|.+.|-.|...|.+.|++.+|..-+.+. ...|+++.+|..+..++.... ....+..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999988765 578888878888888765443 5689999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 002772 719 LSNIYSSAQLWDKAMDVRKKMKEMGVRKEP 748 (882)
Q Consensus 719 l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~ 748 (882)
|+-.+...|++.+|...++.|.+..-.-.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999887654333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0087 Score=57.64 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=83.3
Q ss_pred CCHHHHHHHHhhCCC--CCh-------hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH-HHhc
Q 002772 553 GCLNFARRVFDLMPV--RNV-------ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA-ACSH 622 (882)
Q Consensus 553 g~~~~A~~~~~~m~~--~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~-a~~~ 622 (882)
.+.++..+++.++.. +.- ..|..++-+....|+.+.|...++++.. --|.+.-...+=. -+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHH
Confidence 345555555555542 222 1122334444555556666666665554 3444332222211 1234
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHH
Q 002772 623 SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIA 701 (882)
Q Consensus 623 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~ 701 (882)
.|.+++|.++++...++ . +-|..+|--=+-++-..|+--+|++-+..- ..-+++..+|.-|...|...|+++.|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45666666666666653 1 223444444444444444444554433322 11233333666666666666666666666
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 702 AQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 702 ~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+|+++=+.|.++..+..|+.++.-.|-
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 666666666666666666666555553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0088 Score=54.36 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=77.7
Q ss_pred HHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchH
Q 002772 653 VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 653 i~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
..-+-..|++++|..+|.-. ...|.+...|..|...|...++.+.|...+-.+..+.++||..+...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445689999999998865 24566666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002772 732 AMDVRKKMKE 741 (882)
Q Consensus 732 a~~~~~~m~~ 741 (882)
|...++...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987655
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0071 Score=67.78 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCCChhhHHHHHHHHHc--cC---ChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002772 566 PVRNVITWNVIIMAYGM--HG---EGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALFAACSHSGMVSEGMDLFYKMKDD 639 (882)
Q Consensus 566 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 639 (882)
...|...|...+.|... .+ ...+|.++|++.++. .||- ..+..+..++....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-------dP~~a~a~A~la~~~~~~~--------------- 390 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-------EPDFTYAQAEKALADIVRH--------------- 390 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHH---------------
Confidence 35677888888877543 22 367899999999994 5874 33443322221110
Q ss_pred cCCCCChhHHHHHHHHhhccCCHHHHHHHHHh---CCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 640 YGIEPSPDHYACVVDLLGRAGKVEDAYQLINM---MPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 640 ~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
+..|.. .+++..+.+..++ ++..|..+.++.++.-.....|+.+.|...++++++++| +...|
T Consensus 391 -~~~~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~ 456 (517)
T PRK10153 391 -SQQPLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNY 456 (517)
T ss_pred -hcCCcc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHH
Confidence 111100 0111122222211 111222222455554444455666666666666666666 34556
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 717 VLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 717 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+.++.+|...|+.++|.+.+++....
T Consensus 457 ~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 457 VLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666666666554433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.2 Score=52.38 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHH
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAAC 620 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~ 620 (882)
+.+.-|.-+...|+...|.++..+..-||-.-|...+.+|+..|++++-.++... . -.++-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-------KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-------KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-------CCCCChHHHHHHH
Confidence 3344456667789999999999998889999999999999999999877765432 2 2347888899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
...|...+|..+...+. +.--+.+|.++|.+.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999998887632 245678889999999887765553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0048 Score=63.77 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAA-CSHSGMVSEGMDLFYKMKDDYGIEPSPDHY 649 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 649 (882)
.+|-.++....+.+..+.|-.+|++.++.+ .-+...|...... +...++.+.|..+|+...+.+ ..+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHH
Confidence 357777777777777888888888887543 2233344444333 333566777999999988753 4566778
Q ss_pred HHHHHHhhccCCHHHHHHHHHhCC----CCC-CchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 650 ACVVDLLGRAGKVEDAYQLINMMP----PEF-DKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 650 ~~li~~l~r~g~~~eA~~~~~~m~----~~p-~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
...++.+.+.|+.+.|..+|++.- .+. ... +|...+..-..+|+++....+.+++.++-|++..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~-iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKEKQSKK-IWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH-HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 888899999999999999998752 122 223 9999999999999999999999999999887544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0025 Score=60.46 Aligned_cols=93 Identities=10% Similarity=-0.139 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCC---chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFD---KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
...|..++..+...|++++|...+++. ...|+ ...+|..+...+...|+.+.|...++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888887765 22222 22378899999999999999999999999999999999999999
Q ss_pred HHH-------HcCCchHHHHHHHH
Q 002772 722 IYS-------SAQLWDKAMDVRKK 738 (882)
Q Consensus 722 ~y~-------~~g~~~~a~~~~~~ 738 (882)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 998 88888866655554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0027 Score=65.20 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=66.6
Q ss_pred HHhhccCCHHHHHHHHHhC-CCCCCchh----hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCC
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAG----AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~----~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
+-..+.|++.+|.+.+.+. .+.|++.. .|.....+...+|+.++|....+.+++++|.....|..-++.|...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888877654 45555442 344445566778888888888888889988888888888888888899
Q ss_pred chHHHHHHHHHHhC
Q 002772 729 WDKAMDVRKKMKEM 742 (882)
Q Consensus 729 ~~~a~~~~~~m~~~ 742 (882)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988888776554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0036 Score=59.60 Aligned_cols=81 Identities=12% Similarity=-0.041 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCC-CCC---CchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMMP-PEF---DKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIY 723 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m~-~~p---~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 723 (882)
.|..+...+.+.|++++|...+++.. ..| +...+|..+...+...|+.+.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555566666666555431 111 12237788888888888888899999999999998888888888888
Q ss_pred HHcCC
Q 002772 724 SSAQL 728 (882)
Q Consensus 724 ~~~g~ 728 (882)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.8 Score=52.55 Aligned_cols=212 Identities=14% Similarity=0.169 Sum_probs=92.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCH
Q 002772 53 ARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAV--AGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDM 130 (882)
Q Consensus 53 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 130 (882)
...+++..|+.....+.+.. |+. .|..++.++ .+.|+.++|..+++.....+ +.|..+...+...|...+ ..
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~-~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLG-KL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHh-hh
Confidence 34455555555555544431 221 233444443 34555555555555433322 245555555555566555 66
Q ss_pred HHHHHHHhccCC--CCceeHHHHHHHHHhcCCchH----HHHHHHHHHHCCCCCChhhHHHHHHHhccCCcc-------c
Q 002772 131 WDVYKVFDRITE--KDQVSWNSMIATLCRFGKWDL----ALEAFRMMLYSNVEPSSFTLVSVALACSNLSRR-------D 197 (882)
Q Consensus 131 ~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~ 197 (882)
++|..+++...+ |+...-..+.-+|++-+++.+ |+++|.. +.-+++.|=+++......... -
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccch
Confidence 666666555443 332223333344444444432 3333331 122334443433332222110 1
Q ss_pred chHHHHHHHHhhhhcC-----CCchhHHHHHHHHHHhcCChhHHHHHHhc-C----CCCCcccHHHHHHHHHcCCChHHH
Q 002772 198 GLRLGRQVHGNSLRVG-----EWNTFIMNALMAMYAKLGRVDDAKTLFKS-F----EDRDLVSWNTIVSSLSQNDKFLEA 267 (882)
Q Consensus 198 ~~~~~~~~~~~~~~~g-----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m----~~~~~~~~~~li~~~~~~g~~~~A 267 (882)
-+..+....+.+++.+ .....+|- ......|+.++|..++.. . ..-+...-|--+.-+...+++.+.
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYL---LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1223344444444332 11122222 223345667777776632 1 112233333444555556666666
Q ss_pred HHHHHHHHHCC
Q 002772 268 VMFLRQMALRG 278 (882)
Q Consensus 268 ~~l~~~m~~~g 278 (882)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 66666665554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.016 Score=54.92 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Ch
Q 002772 570 VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SP 646 (882)
Q Consensus 570 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~ 646 (882)
...|..+...+...|++++|+..|++.+... ..|. ..++..+...+.+.|+.++|+..++..... .| ..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcH
Confidence 4556677777778888888888888887743 2221 246777777888888888888888887753 23 23
Q ss_pred hHHHHHHHHhh-------ccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 647 DHYACVVDLLG-------RAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 647 ~~~~~li~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..+..+...+. +.|++++|... .+.|...++++++.+|++
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~--------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAW--------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHH--------------------------HHHHHHHHHHHHHhCccc
Confidence 44455555554 33333333322 345666777888888854
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00037 Score=54.44 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
++..+..+|...|+++.|+..+++++..+|++
T Consensus 27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 27 ARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 33333333333333333333333333333333
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0043 Score=51.71 Aligned_cols=91 Identities=20% Similarity=0.123 Sum_probs=46.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchh
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVE 696 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~ 696 (882)
..+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++.. ...|.....|..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3334444555555555444432 1112233444445555555555555555442 223333336666666666777777
Q ss_pred HHHHHHHHHhcCCC
Q 002772 697 IGEIAAQNLFLLEP 710 (882)
Q Consensus 697 ~a~~~~~~~~~l~p 710 (882)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77777777766665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.047 Score=56.67 Aligned_cols=155 Identities=11% Similarity=0.132 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMH-GEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFA 618 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~ 618 (882)
+...++.|.+.|++..|-+.+.. +...|... |++++|++.|++..+.-... -.+. ...+..+..
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHH
Confidence 34445667777777777665544 45667676 78888888888876642000 0111 234556667
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-----Ch-hHHHHHHHHhhccCCHHHHHHHHHhCC-CCCC-----chhhHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEP-----SP-DHYACVVDLLGRAGKVEDAYQLINMMP-PEFD-----KAGAWSSLL 686 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~-~~~~~li~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~~ll 686 (882)
.+...|++++|.++|++.... .+.. +. ..|-..+-++...|+...|.+.+++.. ..|. .......|+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 778888888888888887764 2221 11 122333445555677878877777642 2221 122555666
Q ss_pred HHHHhcC--chhHHHHHHHHHhcCCC
Q 002772 687 GACRIHQ--NVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 687 ~a~~~~~--~~~~a~~~~~~~~~l~p 710 (882)
.+|.... .++.+..-++.+..++|
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHhCCHHHHHHHHHHHcccCccHH
Confidence 6665433 33444444444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0019 Score=51.19 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=47.8
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..+...++.+.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888888889999999998888888776543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=51.67 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC-chhHHHHHHHHHhcCCC
Q 002772 646 PDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ-NVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 646 ~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~l~p 710 (882)
...|..+...+.+.|++++|+..|++. ...|+...+|..+..++...| +.+.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777777777777777654 457888779999999999999 79999999999999988
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.072 Score=55.30 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=84.0
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc-CCHHHHHHH
Q 002772 554 CLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS-GMVSEGMDL 632 (882)
Q Consensus 554 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~-g~~~~a~~~ 632 (882)
++++|...+++ .+..|...|++..|-.++.++- ..|... |++++|.+.
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA--------------------~~ye~~~~d~e~Ai~~ 137 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELA--------------------EIYEEQLGDYEKAIEY 137 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHH--------------------HHHCCTT--HHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHH
Confidence 55555555543 4566777777777766665543 455566 889999999
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHhhccCCHHHHHHHHHhCC---C-CC----CchhhHHHHHHHHHhcCchhHHHH
Q 002772 633 FYKMKDDYGIEPS----PDHYACVVDLLGRAGKVEDAYQLINMMP---P-EF----DKAGAWSSLLGACRIHQNVEIGEI 700 (882)
Q Consensus 633 ~~~m~~~~~~~p~----~~~~~~li~~l~r~g~~~eA~~~~~~m~---~-~p----~~~~~~~~ll~a~~~~~~~~~a~~ 700 (882)
|++..+.|..... ..++..+..++.+.|++++|.+++++.. . .+ +....+-..+-.+...||...|..
T Consensus 138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998875543333 3456778889999999999999998752 1 11 111122222334556689999999
Q ss_pred HHHHHhcCCCCCCch
Q 002772 701 AAQNLFLLEPDVASH 715 (882)
Q Consensus 701 ~~~~~~~l~p~~~~~ 715 (882)
.+++..+.+|....+
T Consensus 218 ~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 218 ALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHGTTSTTSTTS
T ss_pred HHHHHHhhCCCCCCc
Confidence 999999999966544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=1.1 Score=50.30 Aligned_cols=342 Identities=13% Similarity=0.037 Sum_probs=181.5
Q ss_pred CCCCCChhhHh-----hHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCC---hHHHHHHHhccCC-
Q 002772 277 RGIKPDGVSIA-----SVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCRE---VECGRRVFDFISD- 347 (882)
Q Consensus 277 ~g~~pd~~t~~-----~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~m~~- 347 (882)
-|+..+..-|. .+++-+...+.+..|.++-..+...- ... ..++.....-+.+..+ -+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-ccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 35555544443 33445555666666666655552221 111 5666777776666532 3334445555555
Q ss_pred -CCceehHHHHHHHhcCCChHHHHHHHHHHHHHcC----CCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchH
Q 002772 348 -KKIALWNAMITGYGQNEYDEEALMLFIKMEEVAG----LWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRY 422 (882)
Q Consensus 348 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 422 (882)
.+-++|..+.+-....|+.+-|..+++.= ...+ +-.+..-+...+.-+...|+.+...+++-++.+.-. ..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E-~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~---~s 579 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELE-PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN---RS 579 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcC-CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH---HH
Confidence 45678888888888888888888776432 1111 011223344556666677777776666655543210 00
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC-CCeeeHHHHHHHHHhcCCHHHHHHHHH--HHhhhhhhhhccccccccccccC
Q 002772 423 VQNALMDMYSRMGRIEISKTIFDDMEV-RDTVSWNTMITGYTICGQHGDALMLLR--EMQNMEEEKNRNNVYDLDETVLR 499 (882)
Q Consensus 423 ~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~~~~~~~~ 499 (882)
.+ +....+...|..+|.+... .|.. .+-..|- .++..+++..|. ..... + +..+
T Consensus 580 ~l------~~~l~~~p~a~~lY~~~~r~~~~~---~l~d~y~-q~dn~~~~a~~~~q~~~~~--~-----------~~~~ 636 (829)
T KOG2280|consen 580 SL------FMTLRNQPLALSLYRQFMRHQDRA---TLYDFYN-QDDNHQALASFHLQASYAA--E-----------TIEG 636 (829)
T ss_pred HH------HHHHHhchhhhHHHHHHHHhhchh---hhhhhhh-cccchhhhhhhhhhhhhhh--h-----------hhcc
Confidence 00 0111122223333332211 1100 0111111 122122221111 10000 0 0002
Q ss_pred CCCCcchHhhHHHhhcCcchHHHHH----------HHHHHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 002772 500 PKPNSITLMTVLPGCGALSALAKGK----------EIHAYAI-RNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVR 568 (882)
Q Consensus 500 ~~p~~~t~~~ll~a~~~~~~~~~a~----------~i~~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~ 568 (882)
..|+. ...-++|++......+. ++...+. +.|....-.+.+--+.-+...|+..+|.++-.+..-|
T Consensus 637 r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fkip 713 (829)
T KOG2280|consen 637 RIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIP 713 (829)
T ss_pred cchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCc
Confidence 23332 23334444433321111 1111111 2232222333344455567789999999999999999
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH 648 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 648 (882)
|-..|.--+.+++..+++++-+++-+.+ ++ ++-|.-...+|.+.|+.+||.+++.+... .
T Consensus 714 dKr~~wLk~~aLa~~~kweeLekfAksk----------ks-PIGy~PFVe~c~~~~n~~EA~KYiprv~~---l------ 773 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEELEKFAKSK----------KS-PIGYLPFVEACLKQGNKDEAKKYIPRVGG---L------ 773 (829)
T ss_pred chhhHHHHHHHHHhhhhHHHHHHHHhcc----------CC-CCCchhHHHHHHhcccHHHHhhhhhccCC---h------
Confidence 9999998899999999998777665543 22 56778888999999999999998866532 1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHh
Q 002772 649 YACVVDLLGRAGKVEDAYQLINM 671 (882)
Q Consensus 649 ~~~li~~l~r~g~~~eA~~~~~~ 671 (882)
.-.+.+|.+.|++.+|.++--+
T Consensus 774 -~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 774 -QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -HHHHHHHHHhccHHHHHHHHHH
Confidence 1568899999999998876544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.54 Score=49.24 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCc
Q 002772 425 NALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNS 504 (882)
Q Consensus 425 ~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~ 504 (882)
+.-|.-+...|+...|.++-.+..-||-.-|-..|.+|+..+++++-.+.... +-.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----------------------kKsP 237 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----------------------KKSP 237 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----------------------CCCC
Confidence 34455566778888888888888888888888888888888888765543211 1234
Q ss_pred chHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 002772 505 ITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDL 564 (882)
Q Consensus 505 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 564 (882)
+.|-.++.+|.+.|...+|..+... ..+..-+.+|.++|++.+|.+.--+
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777888888888887777766654 1225567888888888888666433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0012 Score=51.52 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=47.6
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 690 RIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...|+++.|...++++++.+|+++.++..|+.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999866553
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.004 Score=66.00 Aligned_cols=69 Identities=13% Similarity=-0.023 Sum_probs=60.3
Q ss_pred CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 674 PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH---YVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 674 ~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+|+....|..+..++...|++++|...++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777789999999999999999999999999999998854 889999999999999999988887765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.045 Score=49.65 Aligned_cols=93 Identities=11% Similarity=-0.030 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
+....-.+..-+.+.|++++|..+|+-.... .|. ..-|..|..+|...|++++|+..|...... . +-++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~ 104 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQ 104 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCch
Confidence 3334444555566777777777777777763 354 344556666666677777777777776642 1 12344
Q ss_pred HHHHHHHHhhccCCHHHHHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~ 670 (882)
.+-.+..++...|+.++|.+-|+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555555555555555444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.021 Score=61.37 Aligned_cols=120 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred CCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhh
Q 002772 499 RPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN--MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP----VRNVIT 572 (882)
Q Consensus 499 ~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~----~~~~~~ 572 (882)
+.+.+.+.+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..++..=. -||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 56677888999999999999999999988887764 333344556799999999999999999998644 689999
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS 623 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~ 623 (882)
+|.||..+.+.|++..|.++..+|...+ ...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-----~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE-----EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-----ccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888 677778877777776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.019 Score=48.15 Aligned_cols=79 Identities=10% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcc-cCChhHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCC
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEV-KPNEVTFIALFAACSHSG--------MVSEGMDLFYKMKDDYGIEP 644 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p 644 (882)
...|..+...|++.....+|+.+++.| + .|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~-----i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP 102 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNG-----ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKP 102 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCC
Confidence 345666667799999999999999999 8 999999999999876643 355678899999987 9999
Q ss_pred ChhHHHHHHHHhhc
Q 002772 645 SPDHYACVVDLLGR 658 (882)
Q Consensus 645 ~~~~~~~li~~l~r 658 (882)
+.++|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0056 Score=62.68 Aligned_cols=263 Identities=11% Similarity=-0.007 Sum_probs=164.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHH----hcCC
Q 002772 461 GYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIR----NMLA 536 (882)
Q Consensus 461 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~ 536 (882)
-+++.|+....+.+|+..++-|.+ .+..=+..|+-+-+||.-++++++|.++|..=+- .|-+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe--------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE--------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch--------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 467888888999999988872222 2222334566667788888999999999864321 1111
Q ss_pred -CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--CChhhHHHHHHHHHccCC--------------------h
Q 002772 537 -TDVVVGSALVDMYAKCGCLNFARRVFDLMP-------V--RNVITWNVIIMAYGMHGE--------------------G 586 (882)
Q Consensus 537 -~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-------~--~~~~~~~~li~~~~~~g~--------------------~ 586 (882)
-.......|.+.+--.|.+++|.-.-.+-. . -....+-.+...|...|+ .
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 012223334445555677777665432221 0 112334445555544332 2
Q ss_pred hHHHHHHHHHHH----cCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCC-ChhHHHHHHHHhhc
Q 002772 587 QEVLELLKNMVA----EGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMK---DDYGIEP-SPDHYACVVDLLGR 658 (882)
Q Consensus 587 ~~A~~l~~~m~~----~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~l~r 658 (882)
+.|.++|.+=++ .|. --.....|..|.+.|--.|++++|+...+.=. +.||-+. ....++.+.+++.-
T Consensus 172 ~~Av~fy~eNL~l~~~lgD----r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGD----RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHhhh----HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 334555544322 110 00112356777777777899999998766432 3345443 35578889999999
Q ss_pred cCCHHHHHHHHHhC-------CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC----C--CCCCchHHHHHHHHHH
Q 002772 659 AGKVEDAYQLINMM-------PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL----E--PDVASHYVLLSNIYSS 725 (882)
Q Consensus 659 ~g~~~eA~~~~~~m-------~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~ 725 (882)
.|+++.|.+.++.. ..+.-.+....+|.++|....+++.|+....+-+.+ + -....++..|++.|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999988753 222223336778999999999999999988875543 2 2345678899999999
Q ss_pred cCCchHHHHHHHHHHh
Q 002772 726 AQLWDKAMDVRKKMKE 741 (882)
Q Consensus 726 ~g~~~~a~~~~~~m~~ 741 (882)
.|.-++|+...++-.+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999887766543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.02 Score=59.19 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHH----HHhcCCHHHHHHHHHHHhhhhhhhhccccccccccc
Q 002772 422 YVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITG----YTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETV 497 (882)
Q Consensus 422 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 497 (882)
.+|..+++..-+.+.++.|+.+|.+.......+|...+.. |...++.+.|.++|+..++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk----------------- 64 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK----------------- 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------------
Confidence 3556666666666667777777776664444444333321 1123444445666555554
Q ss_pred cCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC----hh
Q 002772 498 LRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VRN----VI 571 (882)
Q Consensus 498 ~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~--~~~----~~ 571 (882)
. +..+...|...++.+.+.|+.+.|..+|++.. -+. ..
T Consensus 65 -----------------------------------~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~ 108 (280)
T PF05843_consen 65 -----------------------------------K-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKK 108 (280)
T ss_dssp -----------------------------------H-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH
T ss_pred -----------------------------------H-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH
Confidence 2 34567788888899999999999999999876 222 34
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
.|...+.-=.+.|+.+.+.++.+++.+. -|+..++..+++
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~-------~~~~~~~~~f~~ 148 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRAEEL-------FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHH-------TTTS-HHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------hhhhhHHHHHHH
Confidence 7888888888889999999999998884 465444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.033 Score=62.51 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcC--CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 695 VEIGEIAAQNLFLL--EPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 695 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+.+...++++..+ +|.++..|..++-++...|++++|...+++..+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44566666676664 77788889999999999999999999999987776
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0033 Score=51.48 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=55.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcc-cCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccC
Q 002772 583 HGEGQEVLELLKNMVAEGSRGGEV-KPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAG 660 (882)
Q Consensus 583 ~g~~~~A~~l~~~m~~~g~~~~~~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g 660 (882)
.|++++|+.+|+++.+.. . .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..++.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhC
Confidence 578899999999999865 1 11344555578888889999999999888 2 22332 344445577888888
Q ss_pred CHHHHHHHHHh
Q 002772 661 KVEDAYQLINM 671 (882)
Q Consensus 661 ~~~eA~~~~~~ 671 (882)
++++|++.+++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 88888888764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0062 Score=48.24 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=53.6
Q ss_pred HHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHH
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
..|.+.+++++|.+.++.+ ...|+++..|......+...|+.+.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677788888888888876 457888778999999999999999999999999999998766543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.042 Score=50.35 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHHHhC---CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCch
Q 002772 641 GIEPSPDHYACVVDLLGRAGKVEDAYQLINMM---PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD--VASH 715 (882)
Q Consensus 641 ~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~ 715 (882)
.+-|+..+--.|...+.+.|+..||...+++. ++..|.. +.-.+..+....++...+...++++.+.+|. .|..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 44455555555666666666666666655543 2333333 5555555555556666666666666665553 3444
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 716 YVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 716 ~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
..+++..|+..|++.+|...++...
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5555666666666665555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.019 Score=58.21 Aligned_cols=61 Identities=13% Similarity=-0.086 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV---ASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
++..++.++...|+.+.|...|+++++..|++ +.++..++.+|...|++++|.++++...+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555556666666666665555543 23334445556666666666666655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.044 Score=47.82 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=67.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 002772 575 VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYAC 651 (882)
Q Consensus 575 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 651 (882)
.+..++-..|+.++|+.+|++.+..| .... ...+..+.+++...|++++|..+|+.....+.-.+ +......
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g-----L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAG-----LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 34567788899999999999999988 5444 34677788889999999999999999887532111 1222233
Q ss_pred HHHHhhccCCHHHHHHHHHh
Q 002772 652 VVDLLGRAGKVEDAYQLINM 671 (882)
Q Consensus 652 li~~l~r~g~~~eA~~~~~~ 671 (882)
+...+...|+.+||++.+-.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44567788999998876654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=59.67 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-------C--CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh
Q 002772 541 VGSALVDMYAKCGCLNFARRVFDLMP-------V--RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV 611 (882)
Q Consensus 541 ~~~~li~~y~k~g~~~~A~~~~~~m~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~ 611 (882)
.|..|.+.|.-.|+++.|+..-+.-. . ..-..+..+.+++.-.|+++.|.+.|+.-...-+..+.-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667788888876554321 1 12345667778888888888888888775443200000122234
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
+..+|.++|.-...+++|+.++.+-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777776543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0048 Score=43.01 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
+|..+..++...|+.+.|++.++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 78899999999999999999999999999999988887764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.027 Score=49.11 Aligned_cols=84 Identities=17% Similarity=0.050 Sum_probs=55.4
Q ss_pred HhhccCCHHHHHHHHHhCC----CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC---CCchHHHHHHHHHHcC
Q 002772 655 LLGRAGKVEDAYQLINMMP----PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD---VASHYVLLSNIYSSAQ 727 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g 727 (882)
++-..|+.++|..++++.. ..++....+-.+.++++..|+.++|..++++.++-.|+ +......++-.+...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3444455555555554331 11222225666777788888888888888888877777 6666677778888888
Q ss_pred CchHHHHHHHH
Q 002772 728 LWDKAMDVRKK 738 (882)
Q Consensus 728 ~~~~a~~~~~~ 738 (882)
++++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 88888876654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.056 Score=51.41 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=73.2
Q ss_pred ChhhHHHHHHHhccC--CcccchHHHHHHHHhhhhcC-CCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHH
Q 002772 179 SSFTLVSVALACSNL--SRRDGLRLGRQVHGNSLRVG-EWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIV 255 (882)
Q Consensus 179 ~~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 255 (882)
|..+|..++..+... .++|..+-.......|.+.| ..|..+|+.|++.+=+ |.+- -..+|+.+ -
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------F 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------F 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------h
Confidence 344444444443332 23355555555556666666 6677777777777755 3221 11111111 0
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCC-hhHHHHHHHHHHHhC
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEM-LDTGKEIHAYALRND 313 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g 313 (882)
.- .-.+-+-|++++++|...|+.||..|+..++..+++.+. ..+..++.-++-+..
T Consensus 113 ~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk 169 (228)
T PF06239_consen 113 MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFK 169 (228)
T ss_pred cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 00 123456789999999999999999999999999988775 455566666665543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.041 Score=55.81 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=59.3
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC----CCCCCchhhHHHHHHHHHhcCch
Q 002772 621 SHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM----PPEFDKAGAWSSLLGACRIHQNV 695 (882)
Q Consensus 621 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll~a~~~~~~~ 695 (882)
...|++++|...|+.+.+.|.-.+ ....+-.+..+|...|++++|...|+.+ |..|....+|..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334556666666666655421111 0234445566666666666666666554 33444454677777788888999
Q ss_pred hHHHHHHHHHhcCCCCCCc
Q 002772 696 EIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 696 ~~a~~~~~~~~~l~p~~~~ 714 (882)
+.|...++++++..|+...
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999999997643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=2.6 Score=46.91 Aligned_cols=194 Identities=11% Similarity=0.161 Sum_probs=91.9
Q ss_pred CHHHHHHHHhccCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHH-CCCCCChhhHHHHHHHhccCCcccchHHHHHHHH
Q 002772 129 DMWDVYKVFDRITEKDQVSWNSMIATLCRFGKWDLALEAFRMMLY-SNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHG 207 (882)
Q Consensus 129 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 207 (882)
.+++|.+..+. .|....|..+...-.+.-.++-|...|-+... .|++. ++....+|.
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~--------------------vkrl~~i~s 735 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL--------------------VKRLRTIHS 735 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH--------------------HHHhhhhhh
Confidence 36677666654 34556777777666666677777777766543 34321 111111121
Q ss_pred hhhhcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC----h
Q 002772 208 NSLRVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPD----G 283 (882)
Q Consensus 208 ~~~~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~ 283 (882)
.-.+ .+=|.+| -|++++|.+++-+|..+|.. |..+.+.|++-.+.++++. -|-.-| .
T Consensus 736 ~~~q---------~aei~~~--~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e 796 (1189)
T KOG2041|consen 736 KEQQ---------RAEISAF--YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKE 796 (1189)
T ss_pred HHHH---------hHhHhhh--hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHH
Confidence 1111 1112222 36777777777777766542 3444445555544444431 111111 1
Q ss_pred hhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcC
Q 002772 284 VSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQN 363 (882)
Q Consensus 284 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 363 (882)
..|..+-..++....++.|.+.+.+--.. ..++..|.+...+++-+.+-+.+++. ....-.|...+...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhh
Confidence 23444444444444455555554432111 12334444444455544444444432 22344455555666
Q ss_pred CChHHHHHHHH
Q 002772 364 EYDEEALMLFI 374 (882)
Q Consensus 364 g~~~~A~~l~~ 374 (882)
|..++|.+.|-
T Consensus 866 GMC~qAV~a~L 876 (1189)
T KOG2041|consen 866 GMCDQAVEAYL 876 (1189)
T ss_pred chHHHHHHHHH
Confidence 66666665553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.028 Score=51.74 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=75.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhH
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEP--SPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
....|+.+.+...+..+...|.-.+ +... ...+....+.++.+-. .++..++..+...|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~-----~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL-----DALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH-----HHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH-----HHHHHHHHHHHhccCHHH
Confidence 3456777888888887776542221 1111 2333344444444321 167778888899999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCC
Q 002772 698 GEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK-----EMGVRKEP 748 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~g~~~~~ 748 (882)
+...+++++.++|-+...|..|..+|...|+..+|.+++++++ +.|+.|.+
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 9999999999999999999999999999999999999998874 34654443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.049 Score=48.08 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
..++.+++-++++.|+++....+.+..-..|+. +-...+. . .+.++..|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~-----------~---~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD-----------Y---PPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc-----------c---CCCCCCCCCHHHHHHHHH
Confidence 345566666666666666666666544311111 0000111 1 122447888899999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999888887766666665554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.37 Score=50.86 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-C--hh-h---HHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCcccCChhHH
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPVR-N--VI-T---WNVIIMAYGM---HGEGQEVLELLKNMVAEGSRGGEVKPNEVTF 613 (882)
Q Consensus 544 ~li~~y~k~g~~~~A~~~~~~m~~~-~--~~-~---~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~ 613 (882)
.|+-.|-...+++...++++.+... + +. + --...-++.+ .|+.++|++++..++... ..++..||
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~~ 220 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDTL 220 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHHH
Confidence 4455688899999999999998832 1 11 1 1123445556 799999999999977666 57788888
Q ss_pred HHHHHHHhc---------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHH----HHHHHH---H-----hC
Q 002772 614 IALFAACSH---------SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE----DAYQLI---N-----MM 672 (882)
Q Consensus 614 ~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~----eA~~~~---~-----~m 672 (882)
..+...|-. ....++|.+.|.+.- .+.|+..+--.++.++..+|... +..++. . +-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 776654421 234778888887653 55666544334444555555422 222222 1 11
Q ss_pred CCCCCchhhHH--HHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 673 PPEFDKAGAWS--SLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 673 ~~~p~~~~~~~--~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
...+... .|. +++.++...||.+.+..++++++.+.|..
T Consensus 298 ~~~~~~d-YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 298 SLEKMQD-YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1234444 674 78999999999999999999999998865
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.052 Score=45.63 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCC-CCChhhHhhHHHHhccCCC--------hhHHHHHHHHHHHhCCCCCchhHH
Q 002772 252 NTIVSSLSQNDKFLEAVMFLRQMALRGI-KPDGVSIASVLPACSHLEM--------LDTGKEIHAYALRNDILIDNSFVG 322 (882)
Q Consensus 252 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 322 (882)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +-....+|+.++..+ +.|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 4456667777999999999999999999 8999999999998876432 334667888888888 88888888
Q ss_pred HHHHHHhhc
Q 002772 323 SALVDMYCN 331 (882)
Q Consensus 323 ~~Li~~y~~ 331 (882)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888776543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.3 Score=45.11 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=48.6
Q ss_pred hHHHHHHH--HHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 681 AWSSLLGA--CRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 681 ~~~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+-+-|..| ...+|+..++.....-+.++.| ++.+|.++|-......+++||...+..+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44455544 5678899999888888999999 8999999999999999999999998854
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.66 Score=42.83 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=98.5
Q ss_pred ccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCc--hhh
Q 002772 606 VKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE-PSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDK--AGA 681 (882)
Q Consensus 606 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~--~~~ 681 (882)
+-|....-..|..++...|+..||...|++... |+- -|....-.+.++....++..+|...+++. ...|.- +..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 457776677788888888888888888888876 554 35666677777777888888888887764 222221 113
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
.-.+...+...|..+.|+..++.++..-|+ +..-...+.+++++|+.+++..-+..+-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 345667788999999999999999999985 56677788899999999988765554433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.056 Score=51.41 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCChhhHHHHHHHHHc-----cCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcc----------------CC
Q 002772 567 VRNVITWNVIIMAYGM-----HGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHS----------------GM 625 (882)
Q Consensus 567 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~----------------g~ 625 (882)
.+|..+|..+|..|.+ .|..+=....++.|.+-| +.-|..+|+.||+.+=+. .+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-----v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q 118 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-----VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ 118 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-----CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence 4566666666666653 355666666677777777 777777777777655431 24
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCH
Q 002772 626 VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKV 662 (882)
Q Consensus 626 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~ 662 (882)
.+-|++++++|.. +|+.||.+++..|++.+++.+..
T Consensus 119 q~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 119 QECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 5678999999998 59999999999999999988864
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=2.7 Score=44.48 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=62.9
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhHHHHHHhcCCCCCc---ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChh
Q 002772 211 RVGEWNTFIMNALMAMYAKLGRVDDAKTLFKSFEDRDL---VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGV 284 (882)
Q Consensus 211 ~~g~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 284 (882)
+..+.|...|-.||.-|...|..++.++++++|..|-. ..|..-|++=....++.....+|.+.+......|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHH
Confidence 33478899999999999999999999999999998754 479988988888899999999999988876665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.4 Score=46.12 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=98.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-hHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMP-------VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-VTFIALF 617 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-~t~~~ll 617 (882)
.+...+.|++..|.+.+.+.. .++...|........+.|+..+|+.--++.+.. .|.- ..+..-.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------D~syikall~ra 328 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------DSSYIKALLRRA 328 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------CHHHHHHHHHHH
Confidence 355678899999999998876 345566777777788899999999988888663 2321 1233333
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhH
Q 002772 618 AACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
.++.-.+++++|.+.|+...+. ..+..+-..+ .+|..-+++..-+ -|-.+++.-+...+.+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~l----------~~A~~aLkkSkRk-----d~ykilGi~~~as~~ei 390 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL---EKDCEIRRTL----------REAQLALKKSKRK-----DWYKILGISRNASDDEI 390 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---ccccchHHHH----------HHHHHHHHHhhhh-----hHHHHhhhhhhcccchh
Confidence 4455568899999988887754 2222222222 2333333322111 55556655555555555
Q ss_pred HHHHHHHHhcCCCCCCch--------HHHHHHHHHHcCCchHHHH
Q 002772 698 GEIAAQNLFLLEPDVASH--------YVLLSNIYSSAQLWDKAMD 734 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~--------~~~l~~~y~~~g~~~~a~~ 734 (882)
.....+.++...|+-... +...++.|...++.+++.+
T Consensus 391 kkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 391 KKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 555556667777764332 2345555666665555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.063 Score=57.82 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=93.8
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VRN-----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVK 607 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 607 (882)
+.+.+......+++......+++++..++-+.. .|+ ..|..++|..|..+|..++++++++.=...| +-
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-----iF 135 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-----IF 135 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-----cC
Confidence 334455556666777777778888888887765 222 2455699999999999999999999999999 99
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA 659 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~ 659 (882)
||..||+.|++.+.+.|++..|.++...|... +...+..++..-+..+.+.
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999888765 6666666665555444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.35 Score=48.69 Aligned_cols=171 Identities=13% Similarity=0.069 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC--CCChhh----HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh--hHHHHH
Q 002772 545 LVDMYAKCGCLNFARRVFDLMP--VRNVIT----WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE--VTFIAL 616 (882)
Q Consensus 545 li~~y~k~g~~~~A~~~~~~m~--~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~--~t~~~l 616 (882)
....+.+.|++++|.+.|+++. .|+... .-.++.+|-+.+++++|+..|++.++.. |+. +.+...
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-------P~~~~~~~a~Y 110 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-------PTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------cCCCchHHHHH
Confidence 3445566788888888888887 454321 1234567778888888888888888854 442 344444
Q ss_pred HHHHhc--cC---------------C---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCC
Q 002772 617 FAACSH--SG---------------M---VSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEF 676 (882)
Q Consensus 617 l~a~~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p 676 (882)
+.+.++ .+ + ..+|.+.|+.+++ -|-...-..+|...+..+...-
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH
Confidence 444332 00 1 1233344444443 3333344455555444332110
Q ss_pred CchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 677 DKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA---SHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 677 ~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
... -+ ....-|.+.|+..-|..-++.+++--|+.+ .+...+.+.|...|..++|..+.....
T Consensus 175 a~~-e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKY-EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 000 11 334457778888888999999998877654 456788899999999999998877654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.2 Score=42.20 Aligned_cols=217 Identities=19% Similarity=0.121 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHccCChhHHHHH
Q 002772 519 ALAKGKEIHAYAIRNMLA-TDVVVGSALVDMYAKCGCLNFARRVFDLMP-----VRNVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
....+...+......... .....+......+...+.+..+...+.... ......+..+...+...+++.++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444433322 135677778888899999999988887754 34456677777788888889999999
Q ss_pred HHHHHHcCCCCCcccCChhHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHhhccCCHHHHHHHH
Q 002772 593 LKNMVAEGSRGGEVKPNEVTFIALFA-ACSHSGMVSEGMDLFYKMKDDYGI--EPSPDHYACVVDLLGRAGKVEDAYQLI 669 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~l~r~g~~~eA~~~~ 669 (882)
++...... ..+ ......... .+...|+++++...+...... .- ......+......+...++.++|...+
T Consensus 118 ~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 118 LEKALALD-----PDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHcCC-----CCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 99998854 222 122222333 688999999999999998542 21 123444445555577789999999988
Q ss_pred HhC-CCCCC-chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 670 NMM-PPEFD-KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 670 ~~m-~~~p~-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+. ...+. ....+..+...+...++.+.+...+..+++..|.....+..++..+...|.++++...+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 876 33444 23378888999999999999999999999999987777788888888778899999888776554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.053 Score=46.49 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=72.6
Q ss_pred HHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC----chHHHHHHHHHHcCC
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA----SHYVLLSNIYSSAQL 728 (882)
Q Consensus 654 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 728 (882)
-+++..|++++|++.|.+. ..-|..+.+|+.-..+++.+|+.+.|..-.++++++.-+-. ..|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888877654 34566666899999999999999999999999999864332 358888999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 002772 729 WDKAMDVRKKMKEMGV 744 (882)
Q Consensus 729 ~~~a~~~~~~m~~~g~ 744 (882)
-|+|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.61 Score=51.14 Aligned_cols=202 Identities=13% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCC--chHHHHHHHHHHHCCCCCChhhHHHHHHHhccCCcccchHHHHHHHHhhhhcCCCchhHHHHHHH
Q 002772 148 WNSMIATLCRFGK--WDLALEAFRMMLYSNVEPSSFTLVSVALACSNLSRRDGLRLGRQVHGNSLRVGEWNTFIMNALMA 225 (882)
Q Consensus 148 ~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Li~ 225 (882)
++..=.+|.+-.+ +-+-+.-+++|+++|-.|+......+ |+.. +.+.+|..+|.. .|. -|.-+.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~---~Ay~---gKF~EAAklFk~---~G~-----enRAlE 666 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV---FAYQ---GKFHEAAKLFKR---SGH-----ENRALE 666 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH---HHhh---hhHHHHHHHHHH---cCc-----hhhHHH
Confidence 3344444444333 23445556788888888887664433 4444 666666666532 221 134455
Q ss_pred HHHhcCChhHHHHHHhcCCC--------------CCcccHHHHHHHHHcCCChHHHHHHHHH------HHHCCCCC---C
Q 002772 226 MYAKLGRVDDAKTLFKSFED--------------RDLVSWNTIVSSLSQNDKFLEAVMFLRQ------MALRGIKP---D 282 (882)
Q Consensus 226 ~y~~~g~~~~A~~~f~~m~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~p---d 282 (882)
+|.....+|.|.++...-.. +|+.-=.+....+...|+.++|.++.-+ +.+-+-+. +
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 55555566666665543321 1111112233445566777776655321 11222222 2
Q ss_pred hhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhc
Q 002772 283 GVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQ 362 (882)
Q Consensus 283 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 362 (882)
..+...+..-+.+...+..|.++|..+-.. ..++++....+++++|.++-++.++--...|-.-..-++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 233333333344445555555555544221 2455666666677777666666665322223333333333
Q ss_pred CCChHHHHHHH
Q 002772 363 NEYDEEALMLF 373 (882)
Q Consensus 363 ~g~~~~A~~l~ 373 (882)
+.+++||.+.|
T Consensus 817 ~DrFeEAqkAf 827 (1081)
T KOG1538|consen 817 NDRFEEAQKAF 827 (1081)
T ss_pred hhhHHHHHHHH
Confidence 44444443333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.094 Score=54.62 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
..+..|.-++.+.+++.+|++..++. ..+|++..++--=..||...|+++.|+..++++++++|+|-.+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667788889999999999988865 45677666888888999999999999999999999999999999989888777
Q ss_pred cCCchHH-HHHHHHHHhC
Q 002772 726 AQLWDKA-MDVRKKMKEM 742 (882)
Q Consensus 726 ~g~~~~a-~~~~~~m~~~ 742 (882)
..+..+. .+++..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666554 6788888554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.66 Score=45.28 Aligned_cols=169 Identities=7% Similarity=-0.097 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChh--------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPV--RNVI--------TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV 611 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~ 611 (882)
+++|+..|.-..-+++-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.++++.++.. -+-+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-----~e~~p~ 213 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-----PEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----CcccHH
Confidence 56666666655555555555554332 2222 33566777777889999999999999976 445667
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH-----HHHHHHHhhccCCHHHHHHHHHhCCC-CCCchhhHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDH-----YACVVDLLGRAGKVEDAYQLINMMPP-EFDKAGAWSSL 685 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-----~~~li~~l~r~g~~~eA~~~~~~m~~-~p~~~~~~~~l 685 (882)
....|.+.-.+.|+++.|..+|+...+. .-+.+... ...+...+.-++++.+|...+.+.+. +|.++..-++-
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNK 292 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchH
Confidence 7778888888999999999999977764 22233222 33333445566777777777766642 33343233333
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCCCchH
Q 002772 686 LGACRIHQNVEIGEIAAQNLFLLEPDVASHY 716 (882)
Q Consensus 686 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 716 (882)
.-...-.|+...|.+..+.+++..|.....-
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 3333445677778888888888777654443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.39 Score=46.83 Aligned_cols=171 Identities=10% Similarity=-0.049 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCC--Cc--------ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhH
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFEDR--DL--------VSWNTIVSSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASV 289 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 289 (882)
+++|+..|.-..-+++-...|+.-..| .+ ..-+.++..+.-.|.+.-.++++.+.++.....+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 567777776666666666666644332 22 34467788888889999999999999987666677777888
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCC----CCCchhHHHHHHHHhhcCCChHHHHHHHhccCCC---CceehHHHHHHHhc
Q 002772 290 LPACSHLEMLDTGKEIHAYALRNDI----LIDNSFVGSALVDMYCNCREVECGRRVFDFISDK---KIALWNAMITGYGQ 362 (882)
Q Consensus 290 l~a~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~ 362 (882)
.+.-.+.||.+.+...++.+.+..+ ......+.......|.-.+++..|.+.|++++.. |++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997766431 2334445555556677888999999999988865 45556655555666
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCcchHhhHH
Q 002772 363 NEYDEEALMLFIKMEEVAGLWPNATTMSSVV 393 (882)
Q Consensus 363 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 393 (882)
.|+..+|++.+..| ....|...+-.+++
T Consensus 299 lg~l~DAiK~~e~~---~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 299 LGKLKDALKQLEAM---VQQDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHH---hccCCccchhhhHH
Confidence 78999999999999 44667766655444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=7.3 Score=44.84 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 002772 426 ALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 426 ~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
-++..+.+..+.+.+..+.+...+.+...|-.++..+++.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4566677788888888888888777889999999999999977777666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.012 Score=47.20 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcC----C---CCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLL----E---PDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
++..+...+...|+.+.|...+++++++ . |+...++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666666643 1 2224567788899999999999998887653
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=4.8 Score=41.96 Aligned_cols=291 Identities=14% Similarity=0.093 Sum_probs=173.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhc--CCCCcchhhHHHHHHHhCCCCchHH--HHHHHHHHHhcCChHH
Q 002772 364 EYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVR--SEAFPDKEGIHGHAIKLGLGRDRYV--QNALMDMYSRMGRIEI 439 (882)
Q Consensus 364 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~ 439 (882)
|+-..|.++-.+- . .-+..|...+..+|.+-.. .|+.+.|.+-|+.|... |.... ...|.----+.|..+.
T Consensus 98 Gda~lARkmt~~~-~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 98 GDASLARKMTARA-S-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred CchHHHHHHHHHH-H-hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 4444444443333 1 1244455555555554432 46677777777666531 11111 1222223346777777
Q ss_pred HHHHHhhCCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcc--hHhhHHHhh
Q 002772 440 SKTIFDDMEVR---DTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSI--TLMTVLPGC 514 (882)
Q Consensus 440 A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~--t~~~ll~a~ 514 (882)
|+..-+..-.. -.-.|.+.+...+..|+++.|+++.+.-... . -+.++.. .-..||.+-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~--~--------------vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA--K--------------VIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH--H--------------hhchhhHHHHHHHHHHHH
Confidence 77776665422 2346778889999999999999999876651 1 3344432 122233222
Q ss_pred c--C-cchHHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHccCChhH
Q 002772 515 G--A-LSALAKGKEIHAYAIRNMLATDVVVGS-ALVDMYAKCGCLNFARRVFDLMP--VRNVITWNVIIMAYGMHGEGQE 588 (882)
Q Consensus 515 ~--~-~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~y~k~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~ 588 (882)
+ . ..+...|+..-.+..+ +.||..-.. .-...|.+.|++.++-++++.+- +|....|. ...+++.|+ .
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--t 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--T 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--c
Confidence 1 1 1234445554444444 344433222 22567899999999999999886 44444443 223344554 4
Q ss_pred HHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh-ccCCHHHHH
Q 002772 589 VLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG-RAGKVEDAY 666 (882)
Q Consensus 589 A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~-r~g~~~eA~ 666 (882)
++.=+++...... .+|| ..+...+..+-...|++..|..--+... ...|....|-.|.+.=. ..|+-.++.
T Consensus 311 a~dRlkRa~~L~s----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 311 ALDRLKRAKKLES----LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred HHHHHHHHHHHHh----cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHH
Confidence 5555555443221 6777 4566777778888899988887766665 45788999998888864 459999999
Q ss_pred HHHHhCCCCCCchhhHHHHHHHH
Q 002772 667 QLINMMPPEFDKAGAWSSLLGAC 689 (882)
Q Consensus 667 ~~~~~m~~~p~~~~~~~~ll~a~ 689 (882)
..+.+....|.++ .|......|
T Consensus 384 ~wlAqav~APrdP-aW~adg~vs 405 (531)
T COG3898 384 QWLAQAVKAPRDP-AWTADGVVS 405 (531)
T ss_pred HHHHHHhcCCCCC-cccccCccc
Confidence 9998876677777 786654433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.028 Score=45.09 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
.+|+.+...|...|++++|++.|++.++....-++-.|+ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777777888888888888888776431000001233 45677777788888888888888877654
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.1 Score=48.10 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=108.0
Q ss_pred hhH--HHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHH--------h-ccCCHHHHHHHH
Q 002772 571 ITW--NVIIMAYGMHG-----EGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAAC--------S-HSGMVSEGMDLF 633 (882)
Q Consensus 571 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~--------~-~~g~~~~a~~~~ 633 (882)
..| ..++.|....- ..+.|+.+|.+.+... ++.|+-. .|..+..++ + ......+|.+.-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 566 55666554421 3568899999998321 1567743 333332221 1 133456666666
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 634 YKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 634 ~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
+...+ +.| |......+..++.-.|+++.|..+|++. ...|+.+.+|......+.-.|+.+.|.+..+++++++|.
T Consensus 328 ~rAve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 328 DYVSD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 66664 333 5667777777778788899999999876 568888888988888899999999999999999999997
Q ss_pred CCchHHHHHH--HHHHcCCchHHHHHHH
Q 002772 712 VASHYVLLSN--IYSSAQLWDKAMDVRK 737 (882)
Q Consensus 712 ~~~~~~~l~~--~y~~~g~~~~a~~~~~ 737 (882)
-..+-+.--+ +|+..+ .|+|.+++-
T Consensus 405 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 7665554333 465544 577777665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=8.1 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=15.4
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 002772 254 IVSSLSQNDKFLEAVMFLRQM 274 (882)
Q Consensus 254 li~~~~~~g~~~~A~~l~~~m 274 (882)
=|..+.+.+.+++|++.-+.-
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~ 382 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKAS 382 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhc
Confidence 356677888888888876543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.17 Score=52.87 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEE
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKEPGCSWIEFGDEIH 760 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~ 760 (882)
...+|...|.+.++...|.....++++++|+|.-+..--+.+|...|.++.|...++++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------------------ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------------------ 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 67778888889999999999999999999999999999999999999999999999988764
Q ss_pred EEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 002772 761 KFLAGDGSHQQSEQLHGFLENLSERMRK 788 (882)
Q Consensus 761 ~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 788 (882)
.|...+|...|..|.+++++
T Consensus 321 --------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 --------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred --------CCCcHHHHHHHHHHHHHHHH
Confidence 45667777777777766654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.5 Score=38.13 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=79.5
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccC
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG 660 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g 660 (882)
...|..++..++..+...+. +..-++.++--...+-+=+-..+.++.+-+-|.+.|-. ....+|..|.+.|
T Consensus 13 ildG~V~qGveii~k~v~Ss--------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS--------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRN 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS---------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT
T ss_pred HHhchHHHHHHHHHHHcCcC--------CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhc
Confidence 34577788888888876643 23333333332222233334445555554433332211 1122344444444
Q ss_pred CHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002772 661 KVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 661 ~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
...| ...--+.+...+|.-+.-.+++..+++-+-.+|...+-++++|.+.|...++.+++++.-
T Consensus 84 ~~se----------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 84 KLSE----------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ---H----------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred chHH----------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3322 445556777888888989999999887666678899999999999999999999999999
Q ss_pred hCCCc
Q 002772 741 EMGVR 745 (882)
Q Consensus 741 ~~g~~ 745 (882)
++|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 99974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.39 Score=51.50 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhh---------ccCCHHHHHHHHHhC-CCCCCchhhHHHHHHHHHhcC
Q 002772 625 MVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLG---------RAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 625 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~---------r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~ 693 (882)
..+.|..+|.+....-.+.|+ ...|..+..++. ......+|.++.++. ...|+++.+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467888899998854466776 444544433322 133445666666654 567777767777777788888
Q ss_pred chhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
+.+.|...++++.+++|+.+.++...+++..-.|+.++|.+..++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999998887443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.65 Score=49.80 Aligned_cols=75 Identities=8% Similarity=0.095 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCc-----cCC--ceeEEEeCCEEEEEEe-CCCCCcchHHHHHHHHHHHHHH
Q 002772 715 HYVLLSNIYSSAQLWDKAMDVRKKMKEMGVR-----KEP--GCSWIEFGDEIHKFLA-GDGSHQQSEQLHGFLENLSERM 786 (882)
Q Consensus 715 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~-----~~~--~~s~i~~~~~~~~f~~-~~~~~~~~~~i~~~l~~l~~~m 786 (882)
....++.+|....+-+++. +-+..++..+. -.. -.+..+.++..+.+++ |.. ..+++.....+...+++
T Consensus 248 av~~f~~L~~~e~k~~e~q-~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~--e~v~~al~~ae~~r~~L 324 (453)
T PLN03098 248 GIVAFVSLFLWENKKEEEQ-MSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK--ESVTLAMQKAERYRTEL 324 (453)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH--HHHHHHHHHhHHHHHHH
Confidence 3446666665554444443 22334433221 111 1223345566666654 433 34555566677777888
Q ss_pred HHcCcc
Q 002772 787 RKEGYV 792 (882)
Q Consensus 787 ~~~g~~ 792 (882)
.+.|+.
T Consensus 325 ~~r~Vl 330 (453)
T PLN03098 325 LKRGVL 330 (453)
T ss_pred HHcCcE
Confidence 888754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=9.5 Score=42.81 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=25.8
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHH
Q 002772 232 RVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLEAVMFLRQMA 275 (882)
Q Consensus 232 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 275 (882)
.+++|.+..+.-+ ....|..+.....+.-.++.|...|-+..
T Consensus 678 gledA~qfiEdnP--HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP--HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred chHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4566666655544 44567777776666666666666665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.7 Score=50.11 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=60.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhH--HHHHHHHHhcc
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT--FIALFAACSHS 623 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t--~~~ll~a~~~~ 623 (882)
.-+|.++|+.++|.+.|. ..|++.+|+.+..+|-. .-|... -..|.+-+...
T Consensus 959 al~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~--------~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSE--------GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcC--------CHHHHHHHHHHHHHHHHHc
Confidence 456888888888866554 45788888888777632 112221 24566667777
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC
Q 002772 624 GMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 624 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m 672 (882)
++.-+|-++..+...+ +.--+..|+++-.+++|..+....
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8888887777666543 344566777777888887766554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.1 Score=41.87 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 002772 458 MITGYTICGQHGDALMLLREMQN 480 (882)
Q Consensus 458 li~~~~~~g~~~~A~~~~~~m~~ 480 (882)
....+.+.|++++|.+.|+++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~ 60 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN 60 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455678999999999999976
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.25 Score=45.42 Aligned_cols=71 Identities=25% Similarity=0.388 Sum_probs=41.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChhH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKD----DYGIEPSPDH 648 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 648 (882)
...++..+...|++++|+++.++++... +-|...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445556666777777777777777753 33456677777777777777777777666542 3477776655
Q ss_pred H
Q 002772 649 Y 649 (882)
Q Consensus 649 ~ 649 (882)
-
T Consensus 139 ~ 139 (146)
T PF03704_consen 139 R 139 (146)
T ss_dssp H
T ss_pred H
Confidence 3
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.27 Score=54.02 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=88.5
Q ss_pred HHccCChhHHHHHHHHHH-HcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhc
Q 002772 580 YGMHGEGQEVLELLKNMV-AEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR 658 (882)
Q Consensus 580 ~~~~g~~~~A~~l~~~m~-~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r 658 (882)
....|+++++.++.+.-. -.. + | ..-...++.-+.+.|..+.|+++.+.-..+ .++..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-----i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~ 330 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-----I-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQ 330 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhccc-----C-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHh
Confidence 345677887766664111 111 1 2 334677788888899999998886655443 467778
Q ss_pred cCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 659 AGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 659 ~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
.|+++.|.++.++.. +.. .|..|......+||++.|+.+++++ .-+..|+-+|...|+-+.-.++-+.
T Consensus 331 lg~L~~A~~~a~~~~---~~~-~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 331 LGNLDIALEIAKELD---DPE-KWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp CT-HHHHHHHCCCCS---THH-HHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcC---cHH-HHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHH
Confidence 999999999887653 344 9999999999999999999999874 3467788899999998877777776
Q ss_pred HHhCC
Q 002772 739 MKEMG 743 (882)
Q Consensus 739 m~~~g 743 (882)
...+|
T Consensus 399 a~~~~ 403 (443)
T PF04053_consen 399 AEERG 403 (443)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 66665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.32 Score=42.93 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHH--------------hcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhC--
Q 002772 609 NEVTFIALFAACSHSGMVSEGMDLFYKMKD--------------DYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-- 672 (882)
Q Consensus 609 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--------------~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m-- 672 (882)
|..++..++.++++.|+++....+.+..-. ...+.|+.....+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456777777788888887777777655321 1134478888999999999999999999988764
Q ss_pred --CCCCCchhhHHHHHHHHHhcC
Q 002772 673 --PPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 673 --~~~p~~~~~~~~ll~a~~~~~ 693 (882)
+++-+.. +|..|+.=+....
T Consensus 81 ~Y~I~i~~~-~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKE-FWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHH-HHHHHHHHHHHhc
Confidence 3333344 8999886554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.74 Score=46.39 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 569 NVITWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 569 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
|...|--|...|...|+++.|+.-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.58 Score=46.11 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCc----------------hhHH
Q 002772 39 TRCKESWIESLRSEARS-----NQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDL----------------SLGK 97 (882)
Q Consensus 39 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----------------~~a~ 97 (882)
.+|..+|-+.+..+... ++.+---..++.|.+.|+.-|..+|..||+.+-+..-. .-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67777888887777643 44444556678888999999999999999887554321 2245
Q ss_pred HHHHHHHHhcCCCCChhHHhHHHHHHHhcC
Q 002772 98 QIHAHVVKYGYGLSSVTVANTLVNMYGKCG 127 (882)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 127 (882)
.++++|...|+. ||..+-..|++++++.+
T Consensus 144 ~vLeqME~hGVm-PdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVM-PDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCC-CchHHHHHHHHHhcccc
Confidence 566666666666 66666666666666655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.3 Score=44.52 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=77.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHH---HHHHhcCchh
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLL---GACRIHQNVE 696 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll---~a~~~~~~~~ 696 (882)
....|+..+|...|+..... .+-+...--.|..+|...|+.++|..++..+|.+-... .|..|. ....+-.+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhcCC
Confidence 44567777777777777653 22235556667777888888888888888877554444 443321 1122222221
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 697 IGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 697 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.. ..++.-+..+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2345566779999999999999999999999999877666544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.86 E-value=3 Score=40.71 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=82.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC----hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN----EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPD 647 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 647 (882)
.+-.....+.+.|++.+|++.|+++.... |+ ......+..++-+.|++++|...++...+.|.-.|...
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34455666788899999999999998865 43 23455677788888999999999988887754444322
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch------------
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH------------ 715 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~------------ 715 (882)
+.....+++........ +...+..+....|...++.+++.-|+++-.
T Consensus 80 -~A~Y~~g~~~~~~~~~~--------------------~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 80 -YALYMLGLSYYKQIPGI--------------------LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------------H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhCccc--------------------hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 11111111110000000 000122234455666666666666665432
Q ss_pred -----HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 716 -----YVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 716 -----~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
-..++..|.+.|+|..|..-++.+.+.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 235778899999999999888877664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.76 E-value=7.5 Score=38.21 Aligned_cols=201 Identities=18% Similarity=0.083 Sum_probs=147.1
Q ss_pred cchHhhHHHhhcCcchHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHH-
Q 002772 504 SITLMTVLPGCGALSALAKGKEIHAYAIRN-MLATDVVVGSALVDMYAKCGCLNFARRVFDLMPV--RNV-ITWNVIIM- 578 (882)
Q Consensus 504 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~--~~~-~~~~~li~- 578 (882)
...+..........+.+..+...+...... ........+..+...+...+....+...+..... ++. ..+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 455666667777778888888777777653 3445566777778888888999999999988763 222 33333444
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCcc--cCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 002772 579 AYGMHGEGQEVLELLKNMVAEGSRGGEV--KPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDL 655 (882)
Q Consensus 579 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 655 (882)
.+...|++++|...|++..... . ......+......+...+..+++...+...... ... ....+..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 211 (291)
T COG0457 139 ALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLL 211 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHH
Confidence 7889999999999999997632 1 012334444445567889999999999999863 333 46788888899
Q ss_pred hhccCCHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 656 LGRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 656 l~r~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
+...+.+++|...+.... ..|+....+..+...+...++.+.+....++.++..|.
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999888763 34442226666777766677899999999999999997
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.3 Score=43.97 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-C-hhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002772 575 VIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-N-EVTFIALFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 575 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m 636 (882)
.+..+..+.|+.++|++.|++|.+.. ++ | ......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555556666666777666666542 11 1 223445666666666666666666554
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.96 Score=40.44 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHHhC----CCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 658 RAGKVEDAYQLINMM----PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 658 r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
+.|++++|.+.|+.+ |..|-...+--.|+.++...++.+.|...+++.++++|.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 445555555555544 333444445566777888888888888888888888876654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=13 Score=40.33 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=76.2
Q ss_pred ccCChhHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh---hccCCHHHHHHHHHhCC--CCCCch
Q 002772 606 VKPNEVTFI-ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL---GRAGKVEDAYQLINMMP--PEFDKA 679 (882)
Q Consensus 606 ~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l---~r~g~~~eA~~~~~~m~--~~p~~~ 679 (882)
..|+.+|+. .++.-+-..|-+.+|...+..+.. --+|+...|..+|..= ..+| +.-+.++++.|. +..+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 478888875 467777788999999999999986 4556788888888753 3444 677777777762 344444
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHhc-CCCC
Q 002772 680 GAWSSLLGACRIHQNVEIGEIAAQNLFL-LEPD 711 (882)
Q Consensus 680 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~ 711 (882)
.|...+.--..+|..+-+-.++.++.+ ++|.
T Consensus 532 -lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 -LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred -HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 999988888889988888888877776 5664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.4 Score=42.99 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=95.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh--hHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMP--VRN----VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE--VTFIALF 617 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~--~t~~~ll 617 (882)
...+...|++++|.+.|+.+. -|+ ..+.-.++.++-+.|++++|...|++.++.- |+. ..+...+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-------P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-------PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TT-TTHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCcchhhHHHH
Confidence 344567789999999998876 232 2345567788889999999999999999854 543 2233333
Q ss_pred HHHhc-------------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHH
Q 002772 618 AACSH-------------SGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSS 684 (882)
Q Consensus 618 ~a~~~-------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ 684 (882)
.+.+. .+...+|...|+.+.++ |=......+|...+..+...-.. -=-.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~la~--~e~~ 146 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRLAE--HELY 146 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33222 12234445555555443 44444555665554443110000 1112
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHcCCchHHH
Q 002772 685 LLGACRIHQNVEIGEIAAQNLFLLEPDVAS---HYVLLSNIYSSAQLWDKAM 733 (882)
Q Consensus 685 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~ 733 (882)
+..-|...|...-|..-++.+++--|+.+. +...|...|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345677888888888889999998887654 4567788888888877443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.30 E-value=3 Score=37.83 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhHHHHHHHhcCCCHHHHHHHHhccCCCCceeHHHHHHHHHhcC
Q 002772 80 FPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRFG 159 (882)
Q Consensus 80 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 159 (882)
...++..+...+........++.+.+.+ . .++..+|.|+..|++.. .+.....+.. ..+......+++.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~-~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-S-ENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-c-cchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3455555555566666666666666665 2 56667777777777754 3444444442 223344445666666666
Q ss_pred CchHHHHHHHHH
Q 002772 160 KWDLALEAFRMM 171 (882)
Q Consensus 160 ~~~~A~~~~~~m 171 (882)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.097 Score=33.83 Aligned_cols=32 Identities=25% Similarity=0.104 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
+|..++.++...|+.+.|+..++++++++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 78899999999999999999999999999963
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.15 Score=32.85 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
+|..+...+...|+.+.|...++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 67888888999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.6 Score=39.67 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=96.6
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLG 657 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~ 657 (882)
......|++.+|..+|+...... +-+...-..+..++...|+++.|..++..+-.. --.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC------cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHH
Confidence 34567788888888888888754 222445566777888888888888888877542 11111222334566777
Q ss_pred ccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC--CCCCchHHHHHHHHHHcCCchH
Q 002772 658 RAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE--PDVASHYVLLSNIYSSAQLWDK 731 (882)
Q Consensus 658 r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g~~~~ 731 (882)
++....+..++..+....|++...--.|...+...|+.+.|...+=.++..+ -.|...--.|..++..-|.-|.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 7777777777777766678777677777778888888877666555555433 3455566666677766664443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.3 Score=42.59 Aligned_cols=231 Identities=10% Similarity=-0.029 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh--cCCCc---
Q 002772 464 ICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN--MLATD--- 538 (882)
Q Consensus 464 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~--- 538 (882)
+..+.++|+..+.+-+.+.. ...---.++..+..+.++.|..+++...-...+.. .....
T Consensus 18 ~s~~~~~al~~w~~~L~~l~---------------~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~ 82 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLS---------------DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFL 82 (518)
T ss_pred cCchHHHHHHHHHHHHHHHH---------------HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777665210 11222346667777778888777665443222211 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP-VRN-------VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE 610 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~ 610 (882)
...|-.|...+-+.-++..++.+-..-. -|. -....+|..++.-.+.++++++.|+....--...+.--...
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 2233444455555445555544433211 111 12234466777778889999999999876431000011113
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCCCChhHHHHH-----HHHhhccCCHHHHHHHHHhC-------CCC
Q 002772 611 VTFIALFAACSHSGMVSEGMDLFYKMKD---DYGIEPSPDHYACV-----VDLLGRAGKVEDAYQLINMM-------PPE 675 (882)
Q Consensus 611 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~l-----i~~l~r~g~~~eA~~~~~~m-------~~~ 675 (882)
..+..|-+.+....++++|.-+..+..+ .+++..-..-|.++ .-+|-..|++-+|.+..++. ...
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 4688888889999999999877665542 24544444444443 34556677777777776653 233
Q ss_pred CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE 709 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 709 (882)
+-.......+...|+..|+.|.|..-|+.+....
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3333356678889999999999999998887653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.67 E-value=2.6 Score=37.70 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHhcCCCCCC
Q 002772 695 VEIGEIAAQNLFLLEPDVA 713 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~ 713 (882)
...|...++.++..-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777788888888653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.5 Score=44.42 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=112.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH----HHhh
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVV----DLLG 657 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li----~~l~ 657 (882)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|..+.-...++++.. .-.|+...|+.+= -++.
T Consensus 115 ~~g~~h~a~~~wdklL~d------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred ccccccHHHHHHHHHHHh------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHH
Confidence 357888888899999886 466778888888899999999888888888875 4467776666543 3456
Q ss_pred ccCCHHHHHHHHHhC-CCCCCchhhHHHH--HHHHHhcCchhHHHHHHHHHhcCCCC----CCchHHHHHHHHHHcCCch
Q 002772 658 RAGKVEDAYQLINMM-PPEFDKAGAWSSL--LGACRIHQNVEIGEIAAQNLFLLEPD----VASHYVLLSNIYSSAQLWD 730 (882)
Q Consensus 658 r~g~~~eA~~~~~~m-~~~p~~~~~~~~l--l~a~~~~~~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~ 730 (882)
.+|-+++|++.-++. +++|.+ .|.+- .-.....|+..+|.+..++--..-.+ -+-.|-..+-.|...+.++
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HhccchhHHHHHHhhccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 899999999988875 444443 57654 44566777888888887654332211 1234556666788889999
Q ss_pred HHHHHHHHHHhCCCccCCc
Q 002772 731 KAMDVRKKMKEMGVRKEPG 749 (882)
Q Consensus 731 ~a~~~~~~m~~~g~~~~~~ 749 (882)
.|+++++.=.-+...|+.+
T Consensus 265 ~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 265 KALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHHHHhhccch
Confidence 9999998755555555555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=4.7 Score=38.49 Aligned_cols=178 Identities=16% Similarity=0.108 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHhhCC--CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC-hhHHHHHHHHHhccCCHH
Q 002772 552 CGCLNFARRVFDLMP--VRN-VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVS 627 (882)
Q Consensus 552 ~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~~ll~a~~~~g~~~ 627 (882)
.|-..-|+.-|.+.. .|+ ...||-+.--+...|+++.|.+.|+...+.+ |. ..++..-.-++--.|++.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------p~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-------CcchHHHhccceeeeecCchH
Confidence 344444554454433 333 3556667667777788888888888777743 43 333333333344567777
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHH-HhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHh
Q 002772 628 EGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLI-NMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLF 706 (882)
Q Consensus 628 ~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 706 (882)
-|.+-|...-.. .|+..--+..+-+--+.-+..+|..-+ ++.. ..+.. -|+.-+-.+....--+ +..++++.
T Consensus 151 LAq~d~~~fYQ~---D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e-~WG~~iV~~yLgkiS~--e~l~~~~~ 223 (297)
T COG4785 151 LAQDDLLAFYQD---DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKE-QWGWNIVEFYLGKISE--ETLMERLK 223 (297)
T ss_pred hhHHHHHHHHhc---CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHh-hhhHHHHHHHHhhccH--HHHHHHHH
Confidence 776655554332 333222222222222333455565433 3321 23333 7777665554332111 12233333
Q ss_pred cCCCCC-------CchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 707 LLEPDV-------ASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 707 ~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
+...++ ..+|..|+.-|...|..++|..+++.....+
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 332222 3578899999999999999999999766543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.38 E-value=18 Score=38.80 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=81.5
Q ss_pred HHHhcCC-HHHHHHHHhhCC---CCChhhHHHHHH----HHHcc---CChhHHHHHHHHHHHcCCCCCcccCChh----H
Q 002772 548 MYAKCGC-LNFARRVFDLMP---VRNVITWNVIIM----AYGMH---GEGQEVLELLKNMVAEGSRGGEVKPNEV----T 612 (882)
Q Consensus 548 ~y~k~g~-~~~A~~~~~~m~---~~~~~~~~~li~----~~~~~---g~~~~A~~l~~~m~~~g~~~~~~~pd~~----t 612 (882)
-|-+.|. -+.|.++++.+. .-|..+-|.... +|.+. ....+-+.+=+-..+.| +.|-.+ .
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g-----l~~i~i~e~ei 462 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG-----LTPITISEEEI 462 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----CCcccccHHHH
Confidence 3445555 677888887765 456655554322 23221 12344444444455667 666433 2
Q ss_pred HHHHHHH--HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH
Q 002772 613 FIALFAA--CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL 685 (882)
Q Consensus 613 ~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l 685 (882)
-+.|..| +-..|++.++.-+-.-.. .+.|++.+|..+.-.+....+++||.+++...| |+.. +|++-
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~-~~dsk 531 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNER-MRDSK 531 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--Cchh-hHHHH
Confidence 3444443 456788888876544443 678999999999999999999999999999986 4555 66653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.30 E-value=1 Score=44.48 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHHhhCC--CCChhhHHHHHHHHHcc-----CChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccC-----
Q 002772 557 FARRVFDLMP--VRNVITWNVIIMAYGMH-----GEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSG----- 624 (882)
Q Consensus 557 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g----- 624 (882)
..++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-| +.-|..+|..||+.+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-----VerDl~vYk~LlnvfPKgkfiP~n 126 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-----VERDLDVYKGLLNVFPKGKFIPQN 126 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-----chhhHHHHHHHHHhCcccccccHH
Confidence 3456677776 77888999998888653 55666777889999999 9999999999998765533
Q ss_pred -----------CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHH-HHHHHHHhC
Q 002772 625 -----------MVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE-DAYQLINMM 672 (882)
Q Consensus 625 -----------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~-eA~~~~~~m 672 (882)
+-+=++.++++|.. +|+.||.++-..|+++++|.|..- +...+.--|
T Consensus 127 vfQ~~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 127 VFQKVFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22347889999988 599999999999999999998753 344444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.5 Score=44.63 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=94.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCC
Q 002772 582 MHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGK 661 (882)
Q Consensus 582 ~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~ 661 (882)
+..+.+.-+++-++.++ +.||-.+-..++ +-..+..+.++.++|++..+. |- ..|++...
T Consensus 180 RERnp~aRIkaA~eALe-------i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE-----------~~lg~s~~ 239 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE-------INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE-----------ASLGKSQF 239 (539)
T ss_pred hcCCHHHHHHHHHHHHH-------hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH-----------Hhhchhhh
Confidence 44566777777788877 568866544444 223455688999999887764 11 01111111
Q ss_pred HH---HHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCchHHHHHHHHHHcCCchHHHHHH
Q 002772 662 VE---DAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPD--VASHYVLLSNIYSSAQLWDKAMDVR 736 (882)
Q Consensus 662 ~~---eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~ 736 (882)
.+ ...+.+..-..+|-.. +-..|...+++.|+.++|.+.++.+++..|. +..++..|.+.|...+++.|+..++
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y-~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVY-AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhcccchhhhhhccccchhhh-hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11 1111111111122223 4456778888999999999999999987764 4567788899999999999999998
Q ss_pred HHHHhCCCccCCceeE
Q 002772 737 KKMKEMGVRKEPGCSW 752 (882)
Q Consensus 737 ~~m~~~g~~~~~~~s~ 752 (882)
.+-.+....|....+|
T Consensus 319 ~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 319 AKYDDISLPKSATICY 334 (539)
T ss_pred HHhccccCCchHHHHH
Confidence 8866554545444443
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.2 Score=44.39 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=64.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYA 650 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 650 (882)
.|+.-+.. .+.|++.+|.+.|...++.. +.+...| ..+-.|..++...|++++|..+|..+.+.|+-.|. ++.+-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 35554444 45677999999999988865 1111222 23556777888888888888888888887655554 36666
Q ss_pred HHHHHhhccCCHHHHHHHHHhC
Q 002772 651 CVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 651 ~li~~l~r~g~~~eA~~~~~~m 672 (882)
-|...+.+.|+.++|...+++.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 6666666777777766666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.8 Score=41.94 Aligned_cols=84 Identities=11% Similarity=-0.025 Sum_probs=59.4
Q ss_pred HHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCC
Q 002772 549 YAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGM 625 (882)
Q Consensus 549 y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~ 625 (882)
+...|++++|..+|.-+. .-|..-|..|...+-..+++++|+..|......+ .-|...+-....++...|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~------~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL------KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------cCCCCccchHHHHHHHhCC
Confidence 346788888888887654 3456667777777778888888888888776644 2334445556666777788
Q ss_pred HHHHHHHHHHhHH
Q 002772 626 VSEGMDLFYKMKD 638 (882)
Q Consensus 626 ~~~a~~~~~~m~~ 638 (882)
.+.|+..|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.9 Score=39.28 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=16.2
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCC
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..|+..|+.+.|..-|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 44666777777777766666555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.2 Score=44.26 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhccCCHHHHHHHHHhC----CCCCCchhhHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGKVEDAYQLINMM----PPEFDKAGAWSSLL 686 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~~ll 686 (882)
.|+.-+.. .+.|++.+|..-|...++.|.-.+ ....+--|...+...|++++|...|..+ |..|..++.+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555544 456789999999999988642211 2445666788888888888887776654 44455554555566
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 002772 687 GACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 687 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
......|+.+.|...++++.+--|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6667777777777777777777776544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.9 Score=44.23 Aligned_cols=215 Identities=10% Similarity=0.012 Sum_probs=134.5
Q ss_pred chHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHh-hCC------C--CChhhHHHHHHHHHccCCh
Q 002772 518 SALAKGKEIHAYAIRN--MLATDVVVGSALVDMYAKCGCLNFARRVFD-LMP------V--RNVITWNVIIMAYGMHGEG 586 (882)
Q Consensus 518 ~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~~~-~m~------~--~~~~~~~~li~~~~~~g~~ 586 (882)
.+.+++.+.+...... ....-..++..+.++.++.|.++++...-- .|. + .-..+|-.+..++.+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555443321 112234466778888888888887765422 221 1 1134566677777777777
Q ss_pred hHHHHHHHHHHHc-CCCCCcccCCh---hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-----CChhHHHHHHHHhh
Q 002772 587 QEVLELLKNMVAE-GSRGGEVKPNE---VTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE-----PSPDHYACVVDLLG 657 (882)
Q Consensus 587 ~~A~~l~~~m~~~-g~~~~~~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~~~~~~~li~~l~ 657 (882)
.+++.+-+.-... | ..|.. ....++..|....+.++++++.|+...+- ... ....+|..|...|+
T Consensus 100 ~kt~~y~k~~l~lpg-----t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPG-----TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred hhHHHHHHHHhcCCC-----CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHH
Confidence 7777766554432 2 23311 22334555666666799999999988753 222 13567899999999
Q ss_pred ccCCHHHHHHHHHhC-------CCCCCch----hhHHHHHHHHHhcCchhHHHHHHHHHhcC--CCCCCch----HHHHH
Q 002772 658 RAGKVEDAYQLINMM-------PPEFDKA----GAWSSLLGACRIHQNVEIGEIAAQNLFLL--EPDVASH----YVLLS 720 (882)
Q Consensus 658 r~g~~~eA~~~~~~m-------~~~p~~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~l--~p~~~~~----~~~l~ 720 (882)
+..++++|.-+..+. ..+.-.. -+...|..+++..|.+-.|.+..+++.++ ...|..+ ...++
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999987665543 2111111 03445667899999999999998887775 3444444 44789
Q ss_pred HHHHHcCCchHHHHHHHH
Q 002772 721 NIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 721 ~~y~~~g~~~~a~~~~~~ 738 (882)
+||...|+.|.|.+-++.
T Consensus 254 DIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccHhHHHHHHHH
Confidence 999999998887766554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.73 E-value=7.9 Score=35.02 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPV---RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
...++..+.+.+........++.+.. .+....|.+|..|++.+ ..+.++.++. .++......++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~-----------~~~~yd~~~~~~ 77 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN-----------KSNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh-----------ccccCCHHHHHH
Confidence 34566677777777777777776652 34556677777777653 2334444431 123344455667
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhcc-CCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRA-GKVEDAYQLINMMPPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~ 690 (882)
.|.+.+.++++..++..+.. |...++.+... ++.+.|.+++++- +++..|..++..|.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~----~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ----NNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 77777777777777766532 23334444433 6677777776652 12226666665553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.94 Score=45.88 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=68.8
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 578 MAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 578 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
+-|.++|++++|++.|.+.+. +.| |.+++..-..+|.+...+..|..-.+..... -...+.+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia-------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAY 168 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA-------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAY 168 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc-------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHH
Confidence 456778888888888888777 446 7888888888888777776665554444321 11223333
Q ss_pred hccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHH
Q 002772 657 GRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKA 732 (882)
Q Consensus 657 ~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 732 (882)
.| -..|-...|+.++|.+-++.+++++|++ ..|-..|+......|+
T Consensus 169 SR--------------------------R~~AR~~Lg~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 169 SR--------------------------RMQARESLGNNMEAKKDCETVLALEPKN----IELKKSLARINSLRER 214 (536)
T ss_pred HH--------------------------HHHHHHHHhhHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhh
Confidence 33 3334444567778888888899999974 3344555554444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.18 E-value=7.2 Score=41.46 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---Ceee----HHHHHHHHHh---cCCHHHHHHHHHHHhhhhhhhhcccccccccc
Q 002772 427 LMDMYSRMGRIEISKTIFDDMEVR---DTVS----WNTMITGYTI---CGQHGDALMLLREMQNMEEEKNRNNVYDLDET 496 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 496 (882)
|+-.|-...+++...++.+.+... +... -....-++.+ .|+.++|++++..+.. .
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~---~------------ 211 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE---S------------ 211 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---c------------
Confidence 444577777777777777777633 1111 1123335555 7889999999988655 3
Q ss_pred ccCCCCCcchHhhHHHh
Q 002772 497 VLRPKPNSITLMTVLPG 513 (882)
Q Consensus 497 ~~~~~p~~~t~~~ll~a 513 (882)
...++..|+..+...
T Consensus 212 --~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 212 --DENPDPDTLGLLGRI 226 (374)
T ss_pred --cCCCChHHHHHHHHH
Confidence 455666666555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.31 Score=33.76 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=25.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC-CCCCCchhhHHHHH
Q 002772 648 HYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLL 686 (882)
Q Consensus 648 ~~~~li~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~~ll 686 (882)
.+..+...|.+.|++++|.+++++. ...|++..+|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556666777777777777777665 34677766666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.10 E-value=15 Score=36.55 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHhhCCC--C-C---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhc-
Q 002772 550 AKCGCLNFARRVFDLMPV--R-N---VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSH- 622 (882)
Q Consensus 550 ~k~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~- 622 (882)
.+.|++++|.+.|+.+.. | + ..+--.++-++-+.+++++|+..+++.+... |-.|| +-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----PTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHh
Confidence 356899999999988872 2 2 2233345667778899999999999988854 02333 234444444332
Q ss_pred --c----CCH---HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcC
Q 002772 623 --S----GMV---SEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 623 --~----g~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~ 693 (882)
. .+. .+|..-|+..+.+| |+ ..-..+|..-+...... -..-=.+...-|.++|
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~d~--LA~~Em~IaryY~kr~ 181 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLNDA--LAGHEMAIARYYLKRG 181 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 1 222 23333333333332 22 22222332222221000 0001123455677777
Q ss_pred chhHHHHHHHHHhcCCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 694 NVEIGEIAAQNLFLLEPDVAS---HYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...-|..-++.+++--|+.+. .+..|.++|...|..++|.+..+-+...
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 777777777888877665544 3556667888889888888887766554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.33 E-value=39 Score=38.78 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 002772 608 PNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLG 687 (882)
Q Consensus 608 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~ 687 (882)
-...|.+--+.-+...|...+|.++-.+.+ .||...|-.=+.+|+..+++++-+++-+++.. .. -+.-+..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PI-Gy~PFVe 752 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PI-GYLPFVE 752 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CC-CchhHHH
Confidence 334456666777888899999988876654 38888888889999999999999999888742 23 5777889
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
+|...||.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 999999999988886543222 2577889999999999876543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.10 E-value=7.8 Score=33.91 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI 642 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 642 (882)
..-+......|+-++-.++++++...+ +|++.....+.+||.+.|...++.+++.++.++ |+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE------EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344556666777777777777766533 677777777778888888888888888777775 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.72 E-value=32 Score=36.87 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=124.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhCC----CCChhhHHHHHHHHH-ccCChhHHHHHHHHHHHcCCCCCcccCCh----h
Q 002772 543 SALVDMYAK--CGCLNFARRVFDLMP----VRNVITWNVIIMAYG-MHGEGQEVLELLKNMVAEGSRGGEVKPNE----V 611 (882)
Q Consensus 543 ~~li~~y~k--~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~~~~~~pd~----~ 611 (882)
+.|+++..+ .|+.++|.+.+..+. .+....|-+|+.+-. ...+..+|+++|++..- .-|.. .
T Consensus 114 ~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL-------laPGTLvEEA 186 (421)
T PRK12798 114 QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL-------LAPGTLVEEA 186 (421)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH-------hCCchHHHHH
Confidence 344444332 699999999999987 455667778877644 45689999999999877 34643 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH-HHHHhh---ccCCHHHHHHHHHhCCCCCCchhhHHHHHH
Q 002772 612 TFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYAC-VVDLLG---RAGKVEDAYQLINMMPPEFDKAGAWSSLLG 687 (882)
Q Consensus 612 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-li~~l~---r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~ 687 (882)
....-+......|+.+++..+-.....+|...|=...|.. ++..+. ..-..+.-.+++..|.-.-... +|-.+..
T Consensus 187 ALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~-lYL~iAR 265 (421)
T PRK12798 187 ALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRE-LYLRIAR 265 (421)
T ss_pred HHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHH-HHHHHHH
Confidence 3444455667889999999888888887777775444332 233333 3334455556677775333333 8888888
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHc-----CCchHHHHHHH
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSA-----QLWDKAMDVRK 737 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~ 737 (882)
.-.+.|+.+.|..+.++++.+.+. ...-...+++|... ...+++.+.+.
T Consensus 266 ~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 266 AALIDGKTELARFASERALKLADP-DSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 889999999999999999999743 33344455555443 33445554444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.47 E-value=40 Score=37.70 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHH
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMPVRN---VITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFI 614 (882)
Q Consensus 538 ~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~ 614 (882)
+..+|+..++--.+.|+.+.+..+|++...|- ...|--.+.-.-..|+.+-|-.++....+-- ++-...+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-----~k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-----VKKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-----CCCCcHHHH
Confidence 56678888888888999999999998876442 2344444444444488888887777766643 222233322
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhccCCHHHHH---HHHHhCC-CCCCchhhHHHHHH--
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRAGKVEDAY---QLINMMP-PEFDKAGAWSSLLG-- 687 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~r~g~~~eA~---~~~~~m~-~~p~~~~~~~~ll~-- 687 (882)
.-..-+-..|+.+.|..+++...+.+ |+ ...-..-+...-|.|..+.+. +++.... ..-+.. +...+.-
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~-i~~~l~~~~ 446 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG-ILEKLYVKF 446 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc-hhHHHHHHH
Confidence 22233567789999999999999863 65 333344567778889999888 6665442 222222 3333332
Q ss_pred ---HHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCc
Q 002772 688 ---ACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729 (882)
Q Consensus 688 ---a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 729 (882)
-+...++.+.|..++.++.+..|++-..|..+.++....+..
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 245677899999999999999999999999999988877643
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.34 Score=44.31 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=85.7
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHHHHHHhcCCCh
Q 002772 287 ASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAMITGYGQNEYD 366 (882)
Q Consensus 287 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 366 (882)
..++..+.+.+.......+++.+.+.+ ...+..+.+.|+..|++.+..+...++++.... .-...++..+.+.|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 345667777778888888888888776 567788999999999999888888888884433 4456778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 002772 367 EEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGR 436 (882)
Q Consensus 367 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 436 (882)
++|.-+|.++ ... ...+..+...++++.|.++... ..+..+|..+++.+...+.
T Consensus 87 ~~a~~Ly~~~-~~~---------~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 87 EEAVYLYSKL-GNH---------DEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHCC-TTH---------TTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHc-ccH---------HHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 9999888777 211 1111123344555555533322 2345666666666655443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.39 E-value=23 Score=34.77 Aligned_cols=207 Identities=12% Similarity=0.039 Sum_probs=110.0
Q ss_pred CCCCCcch----HhhHHHhhcCcchHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhh
Q 002772 499 RPKPNSIT----LMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRN--VIT 572 (882)
Q Consensus 499 ~~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~--~~~ 572 (882)
..+||... |--.-.++-...++++++..+..+.+. ...+...|.+ ...++.|.-+.++|..-+ +..
T Consensus 22 ~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl 93 (308)
T KOG1585|consen 22 RWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDL 93 (308)
T ss_pred ccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHH
Confidence 46677543 333445667778888888766665532 1222222211 223444444444444221 234
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCcccCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----CCCh
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAE--GSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGI----EPSP 646 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~~ 646 (882)
|+--...|..+|..+-|-..+++.-+. + ++|+ +|+++|++....... .--.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~len-----v~Pd------------------~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALEN-----VKPD------------------DALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhc-----CCHH------------------HHHHHHHHHHHHHhccchHHHHH
Confidence 555667788888777666666654321 2 4454 344444333322111 1123
Q ss_pred hHHHHHHHHhhccCCHHHHHHHHHhCC-------CCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcC----CCCCCch
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMMP-------PEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLL----EPDVASH 715 (882)
Q Consensus 647 ~~~~~li~~l~r~g~~~eA~~~~~~m~-------~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~~~~~ 715 (882)
+.|.....+|.|..+++||-..+.+-. .-|+.-..+-+.+-.+.-..|...|++.++.-.++ .|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345556677888888888877665431 11222112333344444455778888888775553 4666666
Q ss_pred HHHHHHHHHHcCCchHHHHHHH
Q 002772 716 YVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 716 ~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
...|...| ..|+.+++.++..
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 66666665 4566677766544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.07 E-value=17 Score=40.82 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHH
Q 002772 546 VDMYAKCGCLNFARRVFDLMPV-------RNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFA 618 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~ 618 (882)
..++...|++++|.+.|++... -....+--+.-.+...+++++|.+.|.++.+.. +-...+|.-+..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s------~WSka~Y~Y~~a 347 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES------KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc------ccHHHHHHHHHH
Confidence 4566778888888888886541 122334445566777899999999999999865 334444444444
Q ss_pred HH-hccCCH-------HHHHHHHHHhH
Q 002772 619 AC-SHSGMV-------SEGMDLFYKMK 637 (882)
Q Consensus 619 a~-~~~g~~-------~~a~~~~~~m~ 637 (882)
+| ...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 43 445666 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.59 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 002772 715 HYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 715 ~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
+|..|+++|.+.|+|++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3678999999999999999999984
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.01 E-value=10 Score=34.77 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHhhccCCHHHHHHHHHhCCCC-CCchhhHHHHHHHHHhcC
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEPSP-DHYACVVDLLGRAGKVEDAYQLINMMPPE-FDKAGAWSSLLGACRIHQ 693 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~l~r~g~~~eA~~~~~~m~~~-p~~~~~~~~ll~a~~~~~ 693 (882)
+++.-...++.+++..++..+.- +.|.. .+-..-...+.+.|++.+|..+++++... |..+ .-.+|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP-YAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHc
Confidence 34445677899999999999874 46653 33344456678999999999999998544 4344 6678888776665
Q ss_pred chhHHHHHHHHHhcCCCC
Q 002772 694 NVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~ 711 (882)
.-..=...++.+++-.|+
T Consensus 92 ~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGAD 109 (160)
T ss_pred CChHHHHHHHHHHhcCCC
Confidence 544555666777777663
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.54 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777777777777777777777774
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.23 E-value=58 Score=37.99 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=84.7
Q ss_pred HHHHHHHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcCCC-------hHHHHHHHHHHHHCCCCCChh--hHhhH
Q 002772 222 ALMAMYAKLGRVDDAKTLFKSFE---DRDLVSWNTIVSSLSQNDK-------FLEAVMFLRQMALRGIKPDGV--SIASV 289 (882)
Q Consensus 222 ~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~--t~~~l 289 (882)
++|--+.|||++++|.++..+.. ++....+-..+..|+.+.+ -++...-|++..+.....|.+ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 35556778999999999883333 2344566777777776533 234555566655543333443 22222
Q ss_pred HHHhccCC-C-------hhHHHHHHHHHHHhCCCCC-----chhHHHHHHHHhhcCCChHHHHHHHhccCCCCceehHHH
Q 002772 290 LPACSHLE-M-------LDTGKEIHAYALRNDILID-----NSFVGSALVDMYCNCREVECGRRVFDFISDKKIALWNAM 356 (882)
Q Consensus 290 l~a~~~~~-~-------~~~a~~~~~~~~~~g~~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 356 (882)
|..|--.. . ++.=..+.-.+++.. ... +..++..|-+...+-| .+.|.. ..+... .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~-~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Y 264 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVRED-ERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---Y 264 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---T-TSSSSSSS----HHHHHHHHHHH------GGGCTT-----------H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccC-CCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---H
Confidence 32222211 1 122222222222222 111 1122222211111111 111222 112222 2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCCCcchHhhHHhHhhcCCCCcchhhHHHHHHHhC-CCCchHHHHHHHHHHHh--
Q 002772 357 ITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSVVPACVRSEAFPDKEGIHGHAIKLG-LGRDRYVQNALMDMYSR-- 433 (882)
Q Consensus 357 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~~-- 433 (882)
...+.-.|+++.|++.+.+. .+...|.+.+...+.-+.-..-.+... ..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455679999999988663 455667777776666553322221111 2111111 01111445667777765
Q ss_pred -cCChHHHHHHHhhCC
Q 002772 434 -MGRIEISKTIFDDME 448 (882)
Q Consensus 434 -~g~~~~A~~~~~~m~ 448 (882)
..+..+|...|--+.
T Consensus 339 ~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 339 EITDPREALQYLYLIC 354 (613)
T ss_dssp TTT-HHHHHHHHHGGG
T ss_pred hccCHHHHHHHHHHHH
Confidence 456677777776554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.04 E-value=9.6 Score=39.52 Aligned_cols=130 Identities=12% Similarity=0.202 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--c----CCHHHHHHHHhhCC-------CCChhhHHHHHHHHHccCC
Q 002772 519 ALAKGKEIHAYAIRNMLATDVVVGSALVDMYAK--C----GCLNFARRVFDLMP-------VRNVITWNVIIMAYGMHGE 585 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k--~----g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~ 585 (882)
.++....+++.+.+.|+.-+.++|-+-.-.... . -....|..+|+.|. .++-..+..|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 467778899999999999888777663333333 2 23567899999997 3455666666554 2222
Q ss_pred ----hhHHHHHHHHHHHcCCCCCcccCC-hhHHH-HHHHHHhccCC--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 002772 586 ----GQEVLELLKNMVAEGSRGGEVKPN-EVTFI-ALFAACSHSGM--VSEGMDLFYKMKDDYGIEPSPDHYACVVDLL 656 (882)
Q Consensus 586 ----~~~A~~l~~~m~~~g~~~~~~~pd-~~t~~-~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l 656 (882)
.+++..+|+.+...| +..+ ..-+. .++..+..... +.++.++++.+.+. |+++...+|..+.-+-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~-----f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAG-----FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 466788899999988 5554 33343 44443332222 55888999999987 9999999988775443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.95 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=19.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHH
Q 002772 572 TWNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 572 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777888888888888888888553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.3 Score=44.66 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred hhHHhHhhcCCCCcchhhHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeeHHHHHHHHHhcCCHH
Q 002772 390 SSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHG 469 (882)
Q Consensus 390 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 469 (882)
..++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++... ..-...++..+.+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHH
Confidence 34677777888899999999999988877889999999999999998888888888433 244567788888888888
Q ss_pred HHHHHHHHHhh
Q 002772 470 DALMLLREMQN 480 (882)
Q Consensus 470 ~A~~~~~~m~~ 480 (882)
+|.-++.++..
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 88888888754
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.25 E-value=46 Score=35.74 Aligned_cols=79 Identities=6% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCCChhHHhH
Q 002772 39 TRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPAVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANT 118 (882)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 118 (882)
..|..+|..|+..|-.++..++..+++++|... ++--+..|..-+.+-....+++....++.+-++..+. ..+|..
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~---ldLW~l 114 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN---LDLWML 114 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc---HhHHHH
Confidence 446779999999999999999999999999763 1223345655565555567788888888888776644 445554
Q ss_pred HHH
Q 002772 119 LVN 121 (882)
Q Consensus 119 li~ 121 (882)
-+.
T Consensus 115 Yl~ 117 (660)
T COG5107 115 YLE 117 (660)
T ss_pred HHH
Confidence 444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.07 E-value=47 Score=35.59 Aligned_cols=149 Identities=12% Similarity=-0.024 Sum_probs=83.1
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccC---ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002772 567 VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP---NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIE 643 (882)
Q Consensus 567 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 643 (882)
.....+|..++..+.+.|+++.|...+.++...+ ..+ +......-...+-..|+-++|...++..... .+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-----~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLN-----PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-----CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhh
Confidence 3456678889999999999999999999988744 111 2233334455556678889999888887762 121
Q ss_pred CC--hhHHHHHHHHhhccCCHHHHHHH-HHhCCCCCCchhhHHHHHHHHHhc------CchhHHHHHHHHHhcCCCCCCc
Q 002772 644 PS--PDHYACVVDLLGRAGKVEDAYQL-INMMPPEFDKAGAWSSLLGACRIH------QNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 644 p~--~~~~~~li~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~~ll~a~~~~------~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
.. ......+...+.. ..+..... .... .......++..+..-+... ++.+.+...++.+.++.|....
T Consensus 217 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLE--SLEVISSTNLDKE-SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred hccccccHHHHhhcccc--ccccccccchhhh-hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 11 1111111111100 00000000 0000 0000000333333333333 6788899999999999998888
Q ss_pred hHHHHHHHHH
Q 002772 715 HYVLLSNIYS 724 (882)
Q Consensus 715 ~~~~l~~~y~ 724 (882)
.|..++..+.
T Consensus 294 ~~~~~a~~~~ 303 (352)
T PF02259_consen 294 AWHSWALFND 303 (352)
T ss_pred HHHHHHHHHH
Confidence 8877777664
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.4 Score=38.86 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 682 WSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 682 ~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+..-..+..+.+..+.|...+-+++++.|.+..+..--+.+|.+..++++|++-++++.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3333445566677788888888888888877777777778888888888888888877664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=86.72 E-value=23 Score=39.76 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=106.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCCh-----hHHHHHHHHH-hc---cCCHHHHHHHHHHhHHhcCCCC
Q 002772 574 NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNE-----VTFIALFAAC-SH---SGMVSEGMDLFYKMKDDYGIEP 644 (882)
Q Consensus 574 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~-----~t~~~ll~a~-~~---~g~~~~a~~~~~~m~~~~~~~p 644 (882)
..++....-.|+-+.+++++.+..+.+. +.-.. ..|..++..+ .. ....+.+.++++.+.+. -|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~----i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP 264 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN----IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YP 264 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC----cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CC
Confidence 3455556667888888888887665431 21111 1244444433 22 45688899999999876 36
Q ss_pred ChhHHHHH-HHHhhccCCHHHHHHHHHhCCC-C-----CCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHH
Q 002772 645 SPDHYACV-VDLLGRAGKVEDAYQLINMMPP-E-----FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 645 ~~~~~~~l-i~~l~r~g~~~eA~~~~~~m~~-~-----p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
+...|... ...+...|++++|.+.+++.-. + -... .+--+.+.+...++.+.|...+.++.+.+.-....|.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l-~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL-CYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH-HHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 65555433 4566778999999999986521 1 1111 3444566777889999999999999998766555544
Q ss_pred -HHHHHHHHcCCc-------hHHHHHHHHHHhC
Q 002772 718 -LLSNIYSSAQLW-------DKAMDVRKKMKEM 742 (882)
Q Consensus 718 -~l~~~y~~~g~~-------~~a~~~~~~m~~~ 742 (882)
..+-.|...|+. ++|.+++.+....
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 566678888888 7888887776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.61 E-value=12 Score=34.83 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 002772 695 VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMGVRKE 747 (882)
Q Consensus 695 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~ 747 (882)
++.|...|+++...+|++..+...|--. ++|-++..++.+++....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhhhh
Confidence 5678888999999999887665554322 467777777777765433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.49 E-value=1.3 Score=28.38 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAE 599 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 599 (882)
.+|..+...|...|++++|++.|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888888899999998888883
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.32 E-value=38 Score=33.77 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=88.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKP-NEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVD 654 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 654 (882)
=+..-.+.|++++|.+.|+.+.... + ..| ...+...++-++-+.+++++|+..+++..+.|+-.|+.. |...+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~-p---~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRH-P---FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-C---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 3444567899999999999998754 1 112 245667777888899999999999999998877777754 444444
Q ss_pred HhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-----------------CchHH
Q 002772 655 LLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDV-----------------ASHYV 717 (882)
Q Consensus 655 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------------~~~~~ 717 (882)
+++. +...+. ++. -..-...|...++.++.--|+. .+.-.
T Consensus 115 gLs~----------~~~i~~-~~r------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLSY----------FFQIDD-VTR------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHHH----------hccCCc-ccc------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 4441 111110 000 0001122333333444444432 23345
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 718 LLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 718 ~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+++.|.+.|.|.-|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 7888999999999999988888776
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.31 E-value=27 Score=37.48 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHhcCCC----CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 678 KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEP----DVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 678 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
....|..++..|+++|+++.|..++.++....+ ..+.....-+++....|+-++|...++.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333899999999999999999999999998763 24677778899999999999999988877663
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.23 E-value=6.1 Score=43.60 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHhc
Q 002772 455 WNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNM 534 (882)
Q Consensus 455 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 534 (882)
.+.++.-+.+.|.++.|+++-.+-.. . ..-..+.|+++.|.++...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~---r--------------------------FeLAl~lg~L~~A~~~a~~----- 343 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH---R--------------------------FELALQLGNLDIALEIAKE----- 343 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH---H--------------------------HHHHHHCT-HHHHHHHCCC-----
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH---H--------------------------hHHHHhcCCHHHHHHHHHh-----
Confidence 55666666667777777766444322 1 1122234444444444321
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 002772 535 LATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 535 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 600 (882)
..+...|..|.+...++|+++-|++.|.+.. -|..|.-.|...|+.+.-.++.+.....|
T Consensus 344 -~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 344 -LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp -CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred -cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 2245566666666666666666666666654 24455555556666655555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.16 E-value=3.5 Score=41.78 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHH
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA 615 (882)
Q Consensus 539 ~~~~~~li~~y~k~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ 615 (882)
..++..++..+..+|+.+.+.+.+++.. +-|...|..+|.+|.+.|+...|+..|+++.+.-....++.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3467788999999999999999999876 5588999999999999999999999999987621111228888776665
Q ss_pred HHHH
Q 002772 616 LFAA 619 (882)
Q Consensus 616 ll~a 619 (882)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.67 E-value=10 Score=42.87 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=111.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCC-cchHhhHHHhhcCcchHHHHHHHHHHHHHh
Q 002772 455 WNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPN-SITLMTVLPGCGALSALAKGKEIHAYAIRN 533 (882)
Q Consensus 455 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 533 (882)
-..++-.|-...+++..+++.+.+.. -++.-.+ --.++ .+.|...|+---+-|+-++|..+.--+++.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~v--------ve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKV--------VETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh---Ccchhhh--------hccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 34556667777788888888888765 1000000 00111 234555666666778888888877666653
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhH-
Q 002772 534 MLATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT- 612 (882)
Q Consensus 534 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t- 612 (882)
.-...+ ++||-||++ |+.|- +-+.|-..+..+.|+++|++.-+ +.|+..+
T Consensus 273 eg~vap-------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe-------veP~~~sG 323 (1226)
T KOG4279|consen 273 EGPVAP-------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE-------VEPLEYSG 323 (1226)
T ss_pred cCCCCC-------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc-------cCchhhcc
Confidence 322111 457777764 33332 11234445566788999999887 6787654
Q ss_pred --HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Q 002772 613 --FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACR 690 (882)
Q Consensus 613 --~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~ 690 (882)
+..|+.+-.+ .++.-.++ ..- | ..|-.+++|.|.++.-.++++-. ..+.+-.
T Consensus 324 IN~atLL~aaG~--~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~-----------~y~~asV 377 (1226)
T KOG4279|consen 324 INLATLLRAAGE--HFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVA-----------TYFEASV 377 (1226)
T ss_pred ccHHHHHHHhhh--hccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHH-----------Hhhhhhh
Confidence 4444443322 12222111 110 1 22456788999988877766532 3344555
Q ss_pred hcCchhHHHHHHHHHhcCCCCC
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDV 712 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~ 712 (882)
..+|...+..++++++++.|..
T Consensus 378 LAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hccCHHHHHHHHHHHhccCCce
Confidence 5678889999999999999854
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.43 E-value=11 Score=38.55 Aligned_cols=151 Identities=10% Similarity=0.004 Sum_probs=103.0
Q ss_pred cCCHHHHHHHHHHHhhhhhhhhccccccccccccCCCCCcchHhhHHHhhcCcchHHHHHHHHHHHHHh---cCCCchhH
Q 002772 465 CGQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRN---MLATDVVV 541 (882)
Q Consensus 465 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~~~~ 541 (882)
.|+..+|-..++++++ ..+.|-..+...=.+|...|+.+.-+..+..++.. +++...++
T Consensus 116 ~g~~h~a~~~wdklL~------------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv 177 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD------------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYV 177 (491)
T ss_pred cccccHHHHHHHHHHH------------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHH
Confidence 6888899999999998 68888888888888999999988888888877753 22222333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCC---hhHHHH
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMPVR---NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN---EVTFIA 615 (882)
Q Consensus 542 ~~~li~~y~k~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd---~~t~~~ 615 (882)
-..+.-++..||-+++|++.-++..+- |.-+-.+....+-..|+..++.++..+-...- -..+ ...|-.
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W-----r~s~mlasHNyWH 252 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW-----RQSWMLASHNYWH 252 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch-----hhhhHHHhhhhHH
Confidence 344445556899999999999887633 44444566777778899999988766533221 0000 111222
Q ss_pred HHHHHhccCCHHHHHHHHHHhHH
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
..-.+...+.++.|+++|+.-.-
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHH
Confidence 33334556889999999876443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.90 E-value=2 Score=31.13 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCch
Q 002772 683 SSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 683 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
-.+.-++.+.|+.+.|.+..+.+++++|+|..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 346678899999999999999999999998543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=52 Score=33.93 Aligned_cols=76 Identities=11% Similarity=0.035 Sum_probs=46.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHH
Q 002772 536 ATDVVVGSALVDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA 615 (882)
Q Consensus 536 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ 615 (882)
.++..+-..-+.++++.|+.+..-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+.. ||...-..
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~-------~d~~v~~~ 272 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF-------DDNEIITK 272 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC-------CChhHHHH
Confidence 3455566666777777777443333344443444 234567788888875 6888888888744 66665555
Q ss_pred HHHHHh
Q 002772 616 LFAACS 621 (882)
Q Consensus 616 ll~a~~ 621 (882)
.+.+|.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.28 E-value=33 Score=32.53 Aligned_cols=123 Identities=10% Similarity=0.105 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChhHHHH--HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA--LFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYA 650 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 650 (882)
|..++.... .+.. +.....+++...+ -+-...++.+ +...+...|++++|..-++..... |..+.+.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-----~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk 125 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQAN-----GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLK 125 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhc-----cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHH
Confidence 444444432 2333 5555666666543 1111222222 344577889999999988877642 4444444
Q ss_pred HH-----HHHhhccCCHHHHHHHHHhCCCCCCchhhHHHH-----HHHHHhcCchhHHHHHHHHHhcCCCC
Q 002772 651 CV-----VDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSL-----LGACRIHQNVEIGEIAAQNLFLLEPD 711 (882)
Q Consensus 651 ~l-----i~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~l-----l~a~~~~~~~~~a~~~~~~~~~l~p~ 711 (882)
.+ ...+...|.+|+|+..++....+ .|.++ ..++...|+-+.|+..++++++.+++
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-----~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEE-----SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccc-----cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 43 45667889999999999876532 56654 35678889999999999999998754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.08 E-value=4.6 Score=36.97 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=32.0
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 691 IHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 691 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
.+++.+.++.+++-+--+.|..+..-..-++++...|+|++|.++++.+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44455556666666666666666666666666666666666666666654443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.91 E-value=4 Score=41.42 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
+...++.++...|+.+......+++++++|-+-..|..|...|...|+...|.+.++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5566677777778888888888888888888888888888888888888888888888765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.34 E-value=59 Score=33.54 Aligned_cols=93 Identities=8% Similarity=-0.077 Sum_probs=53.9
Q ss_pred hHhhHHHhhcCcchH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC--ChhhHHHHHHH
Q 002772 506 TLMTVLPGCGALSAL---AKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP-VR--NVITWNVIIMA 579 (882)
Q Consensus 506 t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~m~-~~--~~~~~~~li~~ 579 (882)
++..+..++-..+.. +++..+.+.+... +...+.++-.-++.+.+.++.+++.+++.+|. .. ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 444555666555544 4555566555432 22234455455667777888888888888887 22 33455555555
Q ss_pred H---HccCChhHHHHHHHHHHHcC
Q 002772 580 Y---GMHGEGQEVLELLKNMVAEG 600 (882)
Q Consensus 580 ~---~~~g~~~~A~~l~~~m~~~g 600 (882)
+ ..+ ....|...+.+++...
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHH
Confidence 4 332 3456777777776655
|
It is also involved in sporulation []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.49 E-value=16 Score=40.59 Aligned_cols=148 Identities=17% Similarity=0.063 Sum_probs=102.3
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccCChh-HHHHHHHHHhccCCHHHH
Q 002772 551 KCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEV-TFIALFAACSHSGMVSEG 629 (882)
Q Consensus 551 k~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a 629 (882)
-.|+++.|..++..+++ ..-+.++.-+-+.|..++|+++ .||.. -|... .+.|+++.|
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~--------------s~D~d~rFela----l~lgrl~iA 656 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL--------------STDPDQRFELA----LKLGRLDIA 656 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc--------------CCChhhhhhhh----hhcCcHHHH
Confidence 45778888887777662 2334566667777877777764 34432 23322 366888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchhhHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 002772 630 MDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLE 709 (882)
Q Consensus 630 ~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~ 709 (882)
.++..+.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+...+-+-.
T Consensus 657 ~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 657 FDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 88765543 45568999999999999999999988764 68888888888888876666655554444
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 002772 710 PDVASHYVLLSNIYSSAQLWDKAMDVRKK 738 (882)
Q Consensus 710 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 738 (882)
-. +.--..|...|++++.++++..
T Consensus 723 ~~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 KN-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc-----chHHHHHHHcCCHHHHHHHHHh
Confidence 33 3334567788999998877763
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.11 E-value=1.1e+02 Score=35.65 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChHH
Q 002772 220 MNALMAMYAKLGRVDDAKTLFKSFEDRDLVSWNTIVSSLSQNDKFLE 266 (882)
Q Consensus 220 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 266 (882)
+...|+.+.-.|++++|-.+.-.|-..+..-|.--+..+...++...
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 44555666666666666666666665566666655555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.06 E-value=1.3e+02 Score=36.74 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH----HccCChhHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHh
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAY----GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACS 621 (882)
Q Consensus 546 i~~y~k~g~~~~A~~~~~~m~~~~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~~~~~~pd~~t~~~ll~a~~ 621 (882)
++.--+.|.+.+|..++ .|+...+.....+| ...+.+++|.-.|+..-+. .--+.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------------ekAl~a~~ 976 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY----KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL--------------EKALKAYK 976 (1265)
T ss_pred HHHHHhcccchhhhhee----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH--------------HHHHHHHH
Confidence 33334555556665555 44555544444444 4456777777777654221 23466777
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhccCCHHHHHHHHHhCCCCCCchh-------hHHHHHHHHHhcCc
Q 002772 622 HSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAG-------AWSSLLGACRIHQN 694 (882)
Q Consensus 622 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~r~g~~~eA~~~~~~m~~~p~~~~-------~~~~ll~a~~~~~~ 694 (882)
..|++++|+.+..++.. +-.--..+-..|+.-+...++.-||-++.++--.+|...- .|.--+..+..+++
T Consensus 977 ~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 88999999998887753 2211223336677888888888888888776543433321 35444555555554
Q ss_pred hhHHHHHH
Q 002772 695 VEIGEIAA 702 (882)
Q Consensus 695 ~~~a~~~~ 702 (882)
.+.-+.+.
T Consensus 1055 ~d~iee~l 1062 (1265)
T KOG1920|consen 1055 DDIIEEVL 1062 (1265)
T ss_pred chHHHHHH
Confidence 44444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.72 E-value=5.9 Score=35.61 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=42.2
Q ss_pred cCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002772 692 HQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 692 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
..+.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6677777777777777888888888888888888888888888888777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.14 E-value=2 Score=25.68 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHcCCchHHHHHHH
Q 002772 714 SHYVLLSNIYSSAQLWDKAMDVRK 737 (882)
Q Consensus 714 ~~~~~l~~~y~~~g~~~~a~~~~~ 737 (882)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999988765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=4.1 Score=41.42 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
..+.|-.++...++.+.|.++.+.++.+.|+++.-+---+-+|++.|.+..|..-++...++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 56677788899999999999999999999999988888999999999999999877765443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.56 E-value=1.2e+02 Score=35.35 Aligned_cols=85 Identities=20% Similarity=0.133 Sum_probs=35.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCChhhHhhHHHHhccCCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHhhc---C
Q 002772 256 SSLSQNDKFLEAVMFLRQMALRGIKPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCN---C 332 (882)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~Li~~y~~---~ 332 (882)
..+.-.|+++.|++.+-+ ..+...|.+.+...|.-+.-.+-.+... ..++....-.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888766 3344556777777666655433222211 1111111001111345667777765 3
Q ss_pred CChHHHHHHHhcc
Q 002772 333 REVECGRRVFDFI 345 (882)
Q Consensus 333 g~~~~A~~~f~~m 345 (882)
.+..+|...|--+
T Consensus 341 td~~~Al~Y~~li 353 (613)
T PF04097_consen 341 TDPREALQYLYLI 353 (613)
T ss_dssp T-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHH
Confidence 4555555555433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 2e-10
Identities = 90/593 (15%), Positives = 164/593 (27%), Gaps = 211/593 (35%)
Query: 44 SWI-ESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFPA--V--LKAVAGIQDLSLGKQ 98
++ +++E R YIE R + DN F V L+ ++ L +
Sbjct: 92 KFLMSPIKTEQRQPSMMTR--MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 99 IHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRITEKDQVSWNSMIATLCRF 158
+V+ G + G
Sbjct: 149 PAKNVLIDG--------------VLG---------------------------------S 161
Query: 159 GKWDLALEAFR----------------------------MM--LYSNVEPSSFTLVSVAL 188
GK +AL+ M+ L ++P+ + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS- 220
Query: 189 ACSNLSRR-----DGLR--LGRQVHGNSLRV-------GEWNTF--------------IM 220
SN+ R LR L + + N L V WN F +
Sbjct: 221 --SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 221 NALMAMYAKLGRVDDAKTLFKSFEDRDLVS-W-NTIVSSLSQNDKFLEAVMFLRQMALRG 278
+ L A +D E + L+ + + L + E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-----EVL---------T 324
Query: 279 IKPDGVS-IASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVEC 337
P +S IA + L D K ++ L +I++S N E
Sbjct: 325 TNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTT--IIESSL----------NVLEPAE 370
Query: 338 GRRVFD----FISDKKI------ALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNAT 387
R++FD F I +W +I + D ++ + + P +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQPKES 424
Query: 388 TMSSVVPACVRSEAFPDKEGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDM 447
T+S I ++L + + + ++I D
Sbjct: 425 TIS-----------------IPSIYLELKVKLE--------------NEYALHRSIVDHY 453
Query: 448 EVRDTVSWNTMIT----GYTIC---GQHGDALMLLREMQNMEEEKNRNNVYDLDETVLRP 500
+ T + +I Y G H L+ +++ E V+ LD L
Sbjct: 454 NIPKTFDSDDLIPPYLDQY-FYSHIGHH------LKNIEHPERMTLFRMVF-LDFRFLEQ 505
Query: 501 KPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG 553
K + G L+ L + K Y N + +V +A++D K
Sbjct: 506 KIRHDSTAWNASG-SILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 5e-08
Identities = 76/510 (14%), Positives = 158/510 (30%), Gaps = 141/510 (27%)
Query: 438 EISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNMEEEKNRNNVYDLDETV 497
++ K+I E+ + DA+ + K V E V
Sbjct: 40 DMPKSILSKEEIDHII-------------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 498 LRPKPNSITLMTVLPGCGALSALAKGKEIH--AY-AIRNMLATDVVVGSALVDMYAKCGC 554
LR N LM+ + + + Y R+ L D V +AK
Sbjct: 87 LRI--NYKFLMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQV-------FAK--- 128
Query: 555 LNFARRVFDLMPVRNVITW--------NVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEV 606
N +R L P + NV+I G+ G G+ + + +V
Sbjct: 129 YNVSR----LQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWV------ALDVCLSYKV 176
Query: 607 K---PNEVTFIALFAACSHSGMVSEGM-DLFYKMKDDYGIEPSPDHYACVVDLLGRAGKV 662
+ ++ ++ C+ V E + L Y++ ++ DH + + ++
Sbjct: 177 QCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKL------RI 227
Query: 663 EDAYQLIN--MMPPEFDKA----------GAWSSLLGACRI---HQNVEIGEIAAQNLFL 707
+ + ++ AW++ +C+I + ++ +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF------- 280
Query: 708 LEPDVASHYVLLSNIYS-----SAQLWDKAMDVRKKM--KEMGVRKEP-GCSWIEFGDEI 759
L +H L + + L K +D R + +E+ + P S I + I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSII--AESI 337
Query: 760 HKFLAG-DG-SHQQSEQLH----GFLENLSERMRKEGY-----------VP-DTSCVL-H 800
LA D H ++L L L ++ + +P ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 801 NVNEEEKETLLCG-HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHQATKFISKIES-- 857
+V + + ++ H L + P +TI + + K K+E+
Sbjct: 398 DVIKSDVMVVVNKLHKYSL-----VEKQPKESTISI-------PSIYLELK--VKLENEY 443
Query: 858 ---REIILR-DVRRFHHFKNGTCSCGD-YW 882
R I+ ++ + + D Y+
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-06
Identities = 80/599 (13%), Positives = 180/599 (30%), Gaps = 172/599 (28%)
Query: 295 HLEMLDTGKEIHAYALRNDILIDN--SFVGSALVDMYCN-----CREV----ECG----- 338
H++ +TG+ + Y DIL +FV + C + + E
Sbjct: 6 HMD-FETGEHQYQY---KDILSVFEDAFVD----NFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 339 -------RRVFDFISDK-----KIALWNAMITGYG------QNEYDEEALMLFIKMEEVA 380
R+F + K + + + Y + E + ++M + +E+
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 381 GLWPNATTMSSVVPACV-RSEAF-----------PDKE-GIHGHAIKLGLGRDRYVQNAL 427
L+ V R + + P K I G LG G+ +
Sbjct: 118 RLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVC 171
Query: 428 MDMYSRMGRIEISKTIFDDMEVRDTVSWNTMITGYTICGQHGDALMLLREMQNM--EEEK 485
+ + M+ + W + +L +Q + + +
Sbjct: 172 LS-----------YKVQCKMD--FKIFWLNL-------KNCNSPETVLEMLQKLLYQIDP 211
Query: 486 NRNNVYDLDETVLRPKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSAL 545
N + D ++ + +SI L L K K Y +L V +
Sbjct: 212 NWTSRSDHSSN-IKLRIHSIQ--------AELRRLLKSKP---YE-NCLLVLLNVQNAKA 258
Query: 546 VDMYA-KCGCLNFAR--RVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSR 602
+ + C L R +V D + ++ + + + EV LL + R
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYL--DCR 314
Query: 603 GGEVKPNEVT-----FIALFAACSHSGMVSEGMDL--FYK----------MKDDYGIEPS 645
++ P EV +++ A + +G+ +K ++ +
Sbjct: 315 PQDL-PREVLTTNPRRLSIIAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 646 PDHYACVVDLLGRAGKV--EDA---YQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEI 700
++ L V A L++++ W + I +V +
Sbjct: 369 AEYRKMFDRL-----SVFPPSAHIPTILLSLI---------WFDV-----IKSDVM--VV 407
Query: 701 AAQ--NLFLLEPDVASHYVLLSNIYSSAQL-WDKAMDVRKKMKEMGVRKEPGCSW---IE 754
+ L+E + + +IY ++ + + + + + + S
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 755 FGDE-IHKFLAGDGSH----QQSEQLHGF------LENLSERMRKEGYVPDTSCVLHNV 802
+ D+ + + G H + E++ F L +++R + + S + N
Sbjct: 468 YLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 8e-09
Identities = 26/250 (10%), Positives = 72/250 (28%), Gaps = 16/250 (6%)
Query: 500 PKPNSITLMTVLPGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFAR 559
P L +L +L + + L+ A L A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 560 RVFDLM-------PVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT 612
+ + + + +N +++ + G +E++ +L + G + P+ ++
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-----LTPDLLS 202
Query: 613 FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672
+ A + ++ + G++ A ++ RA + ++ +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV 258
Query: 673 PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKA 732
P F + ++ ++V + L P + ++
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCV 318
Query: 733 MDVRKKMKEM 742
+ V K
Sbjct: 319 VSVEKPTLPS 328
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 8e-07
Identities = 20/179 (11%), Positives = 56/179 (31%), Gaps = 10/179 (5%)
Query: 280 KPDGVSIASVLPACSHLEMLDTGKEIHAYALRNDILIDNSFVGSALVDMYCNCREVECGR 339
P +A +L LD + + + + A ++
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL-AFFKCCLLTDQLPLAH 147
Query: 340 RVFDFISDKK-------IALWNAMITGYGQNEYDEEALMLFIKMEEVAGLWPNATTMSSV 392
+ ++ + ++NA++ G+ + +E + + +++ AGL P+ + ++
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAA 206
Query: 393 VPACVRSEAFPDK-EGIHGHAIKLGLGRDRYVQNALMDMYSRMGRIEISKTIFDDMEVR 450
+ R + E + GL L+ R ++ + +
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 3e-06
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 220 MNALMAMYAKLGRVDDAKTLFKSFEDR-------DLVSWNTIVSSLSQNDKFLEAVMFLR 272
+ A ++ A L + L +N ++ ++ F E V L
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 273 QMALRGIKPDGVSIASVLPACSHLEM 298
+ G+ PD +S A+ L +
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQ 215
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 2e-05
Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 13/183 (7%)
Query: 22 HQPPATTATSLPLPGSQTRCKESWIESLRSEARSNQFREAILSYIEMTRSDIQPDNFAFP 81
L +P ++ L+ E R + A ++ P
Sbjct: 38 QMRMQRLKAKLQMPFQSGE-FKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLA 96
Query: 82 AVLKAVAGIQDLSLGKQIHAHVVKYGYGLSSVTVANTLVNMYGKCGSDMWDVYKVFDRIT 141
+L+ G L + + + + + + +
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL-LAFFKCCLLTD-QLPLAHHLLVVHH 154
Query: 142 EK-------DQVSWNSMIATLCRFGKWDLALEAFRMMLYSNVEPSSFTLVSVALACSNLS 194
+ +N+++ R G + + M+ + + P L+S A A +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---DLLSYAAALQCMG 211
Query: 195 RRD 197
R+D
Sbjct: 212 RQD 214
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 882 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.63 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.48 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.24 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.75 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.62 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 81.55 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.7e-23 Score=159.42 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=162.6
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 7623732078899999999992478740288899999991399899999972099---9990028999999981599268
Q 002772 512 PGCGALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQE 588 (882)
Q Consensus 512 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 588 (882)
..+...+..+.|...+..+.+.. +.+...+..+...|...|++++|...|.+.. ..+...|..+...+...|++++
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 177 CVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 30102471999999999999849-46499999971552200529999999998577755479999999999998789999
Q ss_pred HHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999819999865678-5579999999741188899999999808721998893689999998620499799999
Q 002772 589 VLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQ 667 (882)
Q Consensus 589 A~~l~~~m~~~g~~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~ 667 (882)
|+..|++.++.. |+ ...+..+...+...|+.++|.+.++.... ..+.+...+..+..++.+.|++++|.+
T Consensus 256 A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 326 (388)
T d1w3ba_ 256 AIDTYRRAIELQ-------PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHHHHHHHHTC-------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999849-------99899999999999974879999999986540--487300101579999998789999999
Q ss_pred HHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99829-99999110489999999822751599999999764799997129989999997699
Q 002772 668 LINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL 728 (882)
Q Consensus 668 ~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 728 (882)
.+++. ...|+...+|..+..++...|+.+.|...++++++++|+++..|..|+++|.+.|+
T Consensus 327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999986889899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-21 Score=152.01 Aligned_cols=218 Identities=16% Similarity=0.095 Sum_probs=175.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 732078899999999992478740288899999991399899999972099---99900289999999815992689999
Q 002772 516 ALSALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLEL 592 (882)
Q Consensus 516 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 592 (882)
..+....+........... +.....+..+...+...|..+.|...+++.. +.+...|..+...+...|++++|+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 1000135678888740258-610689986363010247199999999999984946499999971552200529999999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 99999819999865678557999999974118889999999980872199889368999999862049979999999829
Q 002772 593 LKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM 672 (882)
Q Consensus 593 ~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m 672 (882)
+++....+ ..+...+..+...+...|++++|...|+++.+. .+-+...+..+...+...|+.++|.+.++..
T Consensus 226 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 297 (388)
T d1w3ba_ 226 YLRALSLS------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99857775------547999999999999878999999999999984--9998999999999999748799999999865
Q ss_pred -CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf -9999911048999999982275159999999976479999712998999999769905899999999847
Q 002772 673 -PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 673 -~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
...|.....+..+...+...|+.+.|...+++++++.|+++..+..++.+|...|++++|...+++..+.
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 40487300101579999998789999999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-14 Score=105.94 Aligned_cols=195 Identities=12% Similarity=0.027 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH----
Q ss_conf 288899999991399899999972099---9990028999999981599268999999999819999865678557----
Q 002772 540 VVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVT---- 612 (882)
Q Consensus 540 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t---- 612 (882)
..+..+..+|...|+++.|...|.+.. +.+...|..+...|...|++++|++.+++..... |+...
T Consensus 54 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~ 126 (323)
T d1fcha_ 54 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-------PAYAHLVTP 126 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTTGGGCC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC-------CCHHHHHHH
T ss_conf 9999999999983775889999985100222222222222222222221121110002677736-------106788876
Q ss_pred ------------HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCH
Q ss_conf ------------999999974118889999999980872199889368999999862049979999999829-9999911
Q 002772 613 ------------FIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKA 679 (882)
Q Consensus 613 ------------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~ 679 (882)
....+..+...+...++...+........-..+...+..+...+.+.|++++|...+++. ...|+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (323)
T d1fcha_ 127 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 206 (323)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 64000000010000147888876579999999999999713012221110368888888877550021112222222221
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 04899999998227515999999997647999971299899999976990589999999984
Q 002772 680 GAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 680 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
..|..+...+...|+.+.|...+++++++.|+++..+..++.+|...|++++|...+++..+
T Consensus 207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 11013330122111101378887789988432499999999999987899999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.4e-14 Score=102.86 Aligned_cols=144 Identities=13% Similarity=-0.081 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 99268999999999819999865678557999999974118889999999980872199889368999999862049979
Q 002772 584 GEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVE 663 (882)
Q Consensus 584 g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~ 663 (882)
+...+|.+.|++.+.... -.++...+..+...+...|++++|...++..... .+-+...+..+...+.+.|+++
T Consensus 150 ~~~~~a~~~~~~al~~~p----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~ 223 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDP----TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 223 (323)
T ss_dssp HHHHHHHHHHHHHHHHST----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHH----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHCCCCCCCCH
T ss_conf 579999999999999713----0122211103688888888775500211122222--2222111013330122111101
Q ss_pred HHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH-----------HHHHHHHHHCCCCHH
Q ss_conf 999999829-99999110489999999822751599999999764799997129-----------989999997699058
Q 002772 664 DAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHY-----------VLLSNIYSSAQLWDK 731 (882)
Q Consensus 664 eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~~~ 731 (882)
+|.+.+++. ...|+...+|..++.++...|+.+.|...+++++++.|++...+ ..+...+...|+++.
T Consensus 224 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 224 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 303 (323)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 37888778998843249999999999998789999999999999709757001124599999999999999998298899
Q ss_pred HH
Q ss_conf 99
Q 002772 732 AM 733 (882)
Q Consensus 732 a~ 733 (882)
+.
T Consensus 304 ~~ 305 (323)
T d1fcha_ 304 YG 305 (323)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=3.8e-09 Score=71.91 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=70.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHH
Q ss_conf 9999981599268999999999819999865678557999999974118889999999980872199889-----36899
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-----PDHYA 650 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~ 650 (882)
+...+...|+.+.+...++......... ........+......+...+...++...+............ ...+.
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTS-CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8789998145666689999988876630-024689999888888876466788889999999999873115726999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHCC-CCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHC------CCCCCCCHHHHH
Q ss_conf 99998620499799999998299-9999----110489999999822751599999999764------799997129989
Q 002772 651 CVVDLLGRAGKVEDAYQLINMMP-PEFD----KAGAWSSLLGACRIHQNVEIGEIAAQNLFL------LEPDVASHYVLL 719 (882)
Q Consensus 651 ~li~~l~~~g~~~eA~~~~~~m~-~~p~----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~------l~p~~~~~~~~l 719 (882)
.+...+...|+.++|...++... ..+. ....+..+..++...|+.+.|...+++++. ..|.....+..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999986044898999999999762246667778899999999875879999999999998876426674799999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999997699058999999998
Q 002772 720 SNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 720 ~~~y~~~g~~~~a~~~~~~m~ 740 (882)
+.+|...|++++|.+.+++..
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
T ss_conf 999998789999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.9e-10 Score=76.24 Aligned_cols=175 Identities=12% Similarity=0.092 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 28889999999139-9899999972099---9990028999999981599268999999999819999865678557999
Q 002772 540 VVGSALVDMYAKCG-CLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIA 615 (882)
Q Consensus 540 ~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ 615 (882)
..|+....++...| ++++|...++... +.+..+|+.+...+...|++++|++.++++++.. +-+...|..
T Consensus 78 ~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d------p~n~~a~~~ 151 (315)
T d2h6fa1 78 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQH 151 (315)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HCCHHHHHH
T ss_conf 99999999999837679999999999998877422689887588885053788998875554321------004688998
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCC------HHHHHHHHHHC-CCCCCCHHHHHHHHH
Q ss_conf 99997411888999999998087219988-93689999998620499------79999999829-999991104899999
Q 002772 616 LFAACSHSGMVSEGMDLFYKMKDDYGIEP-SPDHYACVVDLLGRAGK------VEDAYQLINMM-PPEFDKAGAWSSLLG 687 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~l~~~g~------~~eA~~~~~~m-~~~p~~~~~~~~ll~ 687 (882)
+...+.+.|++++|++.++.+.+. .| +...|..+..++.+.+. +++|.+.+.+. ...|+....|..+..
T Consensus 152 ~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ 228 (315)
T d2h6fa1 152 RQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 228 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 877888888667899999999987---97449999889999987456310235477679999999849885699999877
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHH
Q ss_conf 9982275159999999976479999712--998999999
Q 002772 688 ACRIHQNVEIGEIAAQNLFLLEPDVASH--YVLLSNIYS 724 (882)
Q Consensus 688 a~~~~~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y~ 724 (882)
.+... ..+.+...++.++++.|+.... +..++.+|.
T Consensus 229 ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 229 ILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 98862-718899999999972877578999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.8e-10 Score=80.30 Aligned_cols=194 Identities=9% Similarity=0.063 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCCCCCCC-HHHH
Q ss_conf 0288899999991399899999972099---999002899999998159-9268999999999819999865678-5579
Q 002772 539 VVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHG-EGQEVLELLKNMVAEGSRGGEVKPN-EVTF 613 (882)
Q Consensus 539 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~ 613 (882)
...++.+...+.+.+..++|...++++. +.+...|+.....+...| ++++|+..+++.++.. |+ ..+|
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-------p~~~~a~ 115 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQVW 115 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHHHHHH
T ss_conf 999999999999588669999999999987988769999999999983767999999999999887-------7422689
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999974118889999999980872199889368999999862049979999999829-99999110489999999822
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIH 692 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~ 692 (882)
..+...+...|+.++|+..++.+.+. -+.+...|..+..++.+.|++++|.+.++++ ...|+....|..+.......
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 88758888505378899887555432--1004688998877888888667899999999987974499998899999874
Q ss_pred CC------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 75------159999999976479999712998999999769905899999999847
Q 002772 693 QN------VEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 693 ~~------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
+. .+.|...+.+++++.|++...+..++.++...| .+++....+...+.
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_conf 56310235477679999999849885699999877988627-18899999999972
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.8e-11 Score=86.69 Aligned_cols=194 Identities=9% Similarity=-0.118 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 78899999999992478740288899999991399899999972099---999002899999998159926899999999
Q 002772 520 LAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNM 596 (882)
Q Consensus 520 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 596 (882)
.+.+...+..+...........+......+...+..+.|...++... +.+..+|+.+...+...|++++|...+++.
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 204 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999855921211110578999874455289999999988718987999999999999826889899988776
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCC
Q ss_conf 9819999865678557999999974118889999999980872199889368999999862049979999999829-999
Q 002772 597 VAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPE 675 (882)
Q Consensus 597 ~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~ 675 (882)
.. +.|+... ....+...+..+++...+..... ..++....+..++..+...|+.++|...+.+. +..
T Consensus 205 ~~-------~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 205 EN-------VLLKELE---LVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp HH-------HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HH-------HHHHHHH---HHHHHHHHCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77-------6899999---99999882441488999998877--186605678879999999866999999999887629
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99110489999999822751599999999764799997129989999997
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
|+....|..++.++...|+.+.|...++++++++|++...|..|...+.-
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 13799999999999878999999999999998796639999999999867
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=3.9e-09 Score=71.84 Aligned_cols=188 Identities=9% Similarity=0.041 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC--CC-C-HHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 078899999999992478740288899999991399899999972099--99-9-0028999999981599268999999
Q 002772 519 ALAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCGCLNFARRVFDLMP--VR-N-VITWNVIIMAYGMHGEGQEVLELLK 594 (882)
Q Consensus 519 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~-~~~~~~li~~~~~~g~~~~A~~l~~ 594 (882)
..+.+..++..+++...+.+...+...+..+.+.|+.+.|..+|+++. .| + ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-
Q ss_conf 9998199998656785579999999-74118889999999980872199889368999999862049979999999829-
Q 002772 595 NMVAEGSRGGEVKPNEVTFIALFAA-CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM- 672 (882)
Q Consensus 595 ~m~~~g~~~~~~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m- 672 (882)
+++..+ +.+...+...... +...|+.+.|..+|+.+... .+.+...+..+++.+.+.|+.+.|..++++.
T Consensus 159 ~al~~~------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 159 KAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHTST------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHC------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999808------8867999999999987655778999999999986--10038899999999998698689999999999
Q ss_pred ---CCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---99999-1104899999998227515999999997647999971
Q 002772 673 ---PPEFD-KAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS 714 (882)
Q Consensus 673 ---~~~p~-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 714 (882)
+..|. ...+|...+..-..+|+.+.+..+.+++.++.|.+..
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8278986899999999999999849999999999999987711022
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=4.8e-09 Score=71.25 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCC--C-----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHH
Q ss_conf 999999913998999999720999--9-----90028999999981599268999999999819999865678-557999
Q 002772 544 ALVDMYAKCGCLNFARRVFDLMPV--R-----NVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIA 615 (882)
Q Consensus 544 ~li~~y~~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~~~ 615 (882)
.+...+...|+.+.|...+..... + ....+..+...+...|++++|...+++.+..... .+..|+ ...+..
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 999999860448989999999997622466677788999999998758799999999999988764-2667479999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999974118889999999980
Q 002772 616 LFAACSHSGMVSEGMDLFYKM 636 (882)
Q Consensus 616 ll~a~~~~g~~~~a~~~~~~m 636 (882)
+...+...|+.++|.+.+++.
T Consensus 297 la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999878999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=2e-08 Score=67.26 Aligned_cols=181 Identities=8% Similarity=0.017 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHCC----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHCCCCH
Q ss_conf 99899999972099----9990028999999981599268999999999819999865678--55799999997411888
Q 002772 553 GCLNFARRVFDLMP----VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN--EVTFIALFAACSHSGMV 626 (882)
Q Consensus 553 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~--~~t~~~ll~a~~~~g~~ 626 (882)
+..++|..+|++.. +.+...|...+..+...|+.++|..+|++++... |. ...+...+..+.+.|..
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-------~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCH
T ss_conf 2459999999999987499879999999999986133899999999999871-------578699999999999982786
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999998087219988936899999986-20499799999998299-9999110489999999822751599999999
Q 002772 627 SEGMDLFYKMKDDYGIEPSPDHYACVVDLL-GRAGKVEDAYQLINMMP-PEFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704 (882)
Q Consensus 627 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~l-~~~g~~~eA~~~~~~m~-~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~ 704 (882)
+.|.++|+.+.+. .+.+...|....... ...|+.+.|..+++.+. ..|+....|...+......|+.+.|+.++++
T Consensus 151 ~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 151 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8899999999980--88867999999999987655778999999999986100388999999999986986899999999
Q ss_pred HHCCCCCCCC----HHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 7647999971----2998999999769905899999999847
Q 002772 705 LFLLEPDVAS----HYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 705 ~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
++...|.++. .|......-...|..+.+.++.+++.+.
T Consensus 229 ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 998278986899999999999999849999999999999987
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.7e-09 Score=74.11 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHH
Q ss_conf 8899999991399899999972099---9990028999999981599268999999999819999865678-55799999
Q 002772 542 GSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALF 617 (882)
Q Consensus 542 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~~~ll 617 (882)
+..+..+|.+.|++++|...|++.. +.+..+|+.+..+|...|++++|++.|+++++.. |+ ..++..+.
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg 112 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_conf 99999999987999999999998543499988999600427888777887523446899987-------61111588899
Q ss_pred HHHHCCCCHHHHHHHHHHHHH
Q ss_conf 997411888999999998087
Q 002772 618 AACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 618 ~a~~~~g~~~~a~~~~~~m~~ 638 (882)
..+...|+.++|...|+...+
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987667999999999986
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.3e-09 Score=74.78 Aligned_cols=170 Identities=11% Similarity=-0.084 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHH
Q ss_conf 40288899999991399899999972099---9990028999999981599268999999999819999865678-5579
Q 002772 538 DVVVGSALVDMYAKCGCLNFARRVFDLMP---VRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTF 613 (882)
Q Consensus 538 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~ 613 (882)
+...+..+..+|.+.|++++|...|++.. +.+..+|..+...|...|++++|++.|++.++.. |+ ....
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 142 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-------PNDPFRS 142 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_conf 889996004278887778875234468999876111158889999998766799999999998653-------0007888
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHC-CCCCCCHHHHHHHHHHH
Q ss_conf 99999974118889999999980872199889368999999862049---979999999829-99999110489999999
Q 002772 614 IALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAG---KVEDAYQLINMM-PPEFDKAGAWSSLLGAC 689 (882)
Q Consensus 614 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g---~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~ 689 (882)
..+.......+..+....+....... .+....+..+...++... ..+.+...+... ...|+....|..+...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 219 (259)
T d1xnfa_ 143 LWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 219 (259)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999998853587899999876403---144434557788888877777899999999986640845099999999999
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 8227515999999997647999971299
Q 002772 690 RIHQNVEIGEIAAQNLFLLEPDVASHYV 717 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 717 (882)
...|+.+.|...+++++...|++...|.
T Consensus 220 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 220 LSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9878999999999999983997799999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=4.5e-10 Score=77.83 Aligned_cols=209 Identities=7% Similarity=-0.103 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHCC---CCCHHHHHHH-HHHHHCCCCHHHHHHHH
Q ss_conf 7889999999999247874028889999999139--9899999972099---9990028999-99998159926899999
Q 002772 520 LAKGKEIHAYAIRNMLATDVVVGSALVDMYAKCG--CLNFARRVFDLMP---VRNVITWNVI-IMAYGMHGEGQEVLELL 593 (882)
Q Consensus 520 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~l~ 593 (882)
++.+...+..+.+.. +.+...+..+...+...+ +.++|...+.++. +++...|... ...+...+..++|++.+
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999999868-8867989886489988430428999999999985592121111057899987445528999999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-
Q ss_conf 9999819999865678557999999974118889999999980872199889368999999862049979999999829-
Q 002772 594 KNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM- 672 (882)
Q Consensus 594 ~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m- 672 (882)
++++..+ +-+...+..+...+...|++++|...+...... .|. . ..+...+...+..+++...+...
T Consensus 168 ~~~i~~~------p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--~-~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 168 DSLITRN------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK--E-LELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HTTTTTT------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH--H-HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHCC------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHH--H-HHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9988718------987999999999999826889899988776776---899--9-999999988244148899999887
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999991104899999998227515999999997647999971299899999976990589999999984
Q 002772 673 PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 673 ~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
...|+....+..+...+...++.+.+...+.++++.+|.+...+..++.+|...|++++|...+++..+
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 718660567887999999986699999999988762913799999999999878999999999999998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=1.6e-07 Score=61.54 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=8.6
Q ss_pred HHCCCHHHHHHHHHHHHCCCC
Q ss_conf 822751599999999764799
Q 002772 690 RIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 690 ~~~~~~~~a~~~~~~~~~l~p 710 (882)
...++.+.|...++++.++.|
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC--
T ss_pred HHHCCHHHHHHHHHHHHHHCC
T ss_conf 984659999999999997597
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.4e-06 Score=53.99 Aligned_cols=141 Identities=6% Similarity=-0.103 Sum_probs=100.2
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHCCC
Q ss_conf 9999913998999999720999990028999999981599268999999999819999865678-557999999974118
Q 002772 546 VDMYAKCGCLNFARRVFDLMPVRNVITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSG 624 (882)
Q Consensus 546 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~~~ll~a~~~~g 624 (882)
...+...|+++.|...|.++.+++...|..+...|...|++++|++.|++.++.+ |+ ...|..+..++.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC
T ss_conf 9999987799999999986489889999999999998589146787899999985-------523466788999998542
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88999999998087219988936899999986204997999999982999999110489999999822751599999999
Q 002772 625 MVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQN 704 (882)
Q Consensus 625 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~ 704 (882)
+.++|...|++.... .+.+... .+...| ...+.....++..+..++...|+.+.|...+++
T Consensus 85 ~~~~A~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~ 145 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145 (192)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--CCCCCHH------HHHHHH-----------HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 499999999999986--7267367------899866-----------543630588999999999997899999999999
Q ss_pred HHCCCCCC
Q ss_conf 76479999
Q 002772 705 LFLLEPDV 712 (882)
Q Consensus 705 ~~~l~p~~ 712 (882)
++++.|+.
T Consensus 146 A~~~~~~~ 153 (192)
T d1hh8a_ 146 ATSMKSEP 153 (192)
T ss_dssp HHTTCCSG
T ss_pred HHHCCCCC
T ss_conf 98369980
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=2.4e-07 Score=60.42 Aligned_cols=30 Identities=13% Similarity=-0.089 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 489999999822751599999999764799
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEP 710 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p 710 (882)
.|..++.++...|+.+.|...+++++++.|
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999987999999999999987495
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.6e-06 Score=51.17 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=55.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99815992689999999998199998656785579999999741188899999999808721998893689999998620
Q 002772 579 AYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGR 658 (882)
Q Consensus 579 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~ 658 (882)
.+...|++++|++.|+++ ..|+...+..+...+...|++++|.+.|++.++.
T Consensus 14 ~~~~~~d~~~Al~~~~~i---------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------------------- 65 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV---------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR------------------- 65 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS---------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHCCCHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------
T ss_conf 999877999999999864---------8988999999999999858914678789999998-------------------
Q ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC----------------CHHHHHHHH
Q ss_conf 4997999999982999999110489999999822751599999999764799997----------------129989999
Q 002772 659 AGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVA----------------SHYVLLSNI 722 (882)
Q Consensus 659 ~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~ 722 (882)
.|+....|..+..++...|+.+.|...++++++..|.+. ..+..++.+
T Consensus 66 ----------------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~ 129 (192)
T d1hh8a_ 66 ----------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 129 (192)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf ----------------5523466788999998542499999999999986726736789986654363058899999999
Q ss_pred HHHCCCCHHHHHHHHHHHHC
Q ss_conf 99769905899999999847
Q 002772 723 YSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 723 y~~~g~~~~a~~~~~~m~~~ 742 (882)
|...|+|++|...++.....
T Consensus 130 ~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 130 YAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHC
T ss_conf 99978999999999999836
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.4e-06 Score=53.03 Aligned_cols=48 Identities=2% Similarity=-0.070 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 999110489999999822751599999999764799997129989999
Q 002772 675 EFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNI 722 (882)
Q Consensus 675 ~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 722 (882)
.|+...+|..++.++...|+.+.|...+++++++.|+++..+..+..+
T Consensus 74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 544668779999999994999999998999987299979999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=5e-07 Score=58.38 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=3.3
Q ss_pred HHHCCCCHHHH
Q ss_conf 86204997999
Q 002772 655 LLGRAGKVEDA 665 (882)
Q Consensus 655 ~l~~~g~~~eA 665 (882)
+|.+.|++++|
T Consensus 81 ~~~~l~~~~~A 91 (201)
T d2c2la1 81 CQLEMESYDEA 91 (201)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHCCCHHHH
T ss_conf 99987999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=3.5e-06 Score=52.93 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89999999815992689999999998
Q 002772 573 WNVIIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 573 ~~~li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
|..+...|...|++++|++.|++...
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89999999981739999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=4.3e-06 Score=52.38 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=44.6
Q ss_pred HHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 9862049979999999829-999991104899999998227515999999997647999971299899999976990589
Q 002772 654 DLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKA 732 (882)
Q Consensus 654 ~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 732 (882)
..+.+.|++++|...+++. ...|+....|..+...+...|+.+.|...++++++++|++...|..++.+|...|++++|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999589999999866021100011333245678887405421288889999987544668779999999994999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999984
Q 002772 733 MDVRKKMKE 741 (882)
Q Consensus 733 ~~~~~~m~~ 741 (882)
...+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.1e-05 Score=49.75 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99110489999999822751599999999764799997129989999997699058999999998
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMK 740 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 740 (882)
|+....|..+..++...|+.+.|...+++++++.|+++..|..++.+|...|++++|...+++..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 98 (117)
T d1elwa_ 34 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 98 (117)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 96013430001101100001121001346777402202677889999998127999999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=4.8e-06 Score=52.07 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=60.3
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 974118889999999980872199889368999999862049979999999829-9999911048999999982275159
Q 002772 619 ACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEI 697 (882)
Q Consensus 619 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~ 697 (882)
.+...|++++|+.+|+..++. -+-+...|..+..++...|++++|...+++. ...|+....|..+..++...|+.+.
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 999969999999999998861--996013430001101100001121001346777402202677889999998127999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999999976479999712998999999
Q 002772 698 GEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 698 a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
|...++++++++|+++..+..+.++-+
T Consensus 90 A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 90 AKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999999999849898999999997838
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=9.8e-06 Score=50.11 Aligned_cols=82 Identities=11% Similarity=-0.050 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999862049979999999829-9999911048999999982275159999999976479999712998999999769
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 649 ~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
|..+..+|.+.|++++|...++.. ...|+....|..++.++...|+.+.|...++++++++|+++.....+..++...+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998864211011000000010022310346777999987222999999999999729898999999999999999
Q ss_pred CCH
Q ss_conf 905
Q 002772 728 LWD 730 (882)
Q Consensus 728 ~~~ 730 (882)
...
T Consensus 145 ~~~ 147 (170)
T d1p5qa1 145 RQL 147 (170)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2.1e-07 Score=60.70 Aligned_cols=18 Identities=6% Similarity=-0.171 Sum_probs=6.2
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 689906899999999981
Q 002772 295 HLEMLDTGKEIHAYALRN 312 (882)
Q Consensus 295 ~~~~~~~a~~~~~~~~~~ 312 (882)
..++++.|...+...++.
T Consensus 164 ~~~~~~~A~~~y~~A~~l 181 (497)
T d1ya0a1 164 YRNQTSQAESYYRHAAQL 181 (497)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
T ss_conf 802478999999999987
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.11 E-value=3.6e-06 Score=52.86 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=70.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999862049979999999829-999991104899999998227515999999997647999971299899999976990
Q 002772 651 CVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLW 729 (882)
Q Consensus 651 ~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 729 (882)
.+...+.+.|++++|...+++. ...|+....|..+..++...++.+.|+..++++++++|+++..+..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH
T ss_conf 99999998760589999886101121111001233545641012587741000001111110000037899999997899
Q ss_pred HHHHHHHHHH
Q ss_conf 5899999999
Q 002772 730 DKAMDVRKKM 739 (882)
Q Consensus 730 ~~a~~~~~~m 739 (882)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=4.6e-05 Score=45.79 Aligned_cols=82 Identities=6% Similarity=-0.045 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999862049979999999829-9999911048999999982275159999999976479999712998999999769
Q 002772 649 YACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQ 727 (882)
Q Consensus 649 ~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 727 (882)
|..+..+|.+.|++++|+..++.. ...|+....|..+..++...|+.+.|...++++++++|+++.+...+..+....+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98499998776220110002232220131048899988999988278999999999999859898999999999999998
Q ss_pred CCH
Q ss_conf 905
Q 002772 728 LWD 730 (882)
Q Consensus 728 ~~~ 730 (882)
...
T Consensus 147 ~~~ 149 (168)
T d1kt1a1 147 EHN 149 (168)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 699
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.4e-05 Score=49.09 Aligned_cols=108 Identities=13% Similarity=-0.093 Sum_probs=69.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH---HHHHHHHHHCC-CCCCC--HHHHHHHHHH
Q ss_conf 999997411888999999998087219988936899999986204997---99999998299-99991--1048999999
Q 002772 615 ALFAACSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKV---EDAYQLINMMP-PEFDK--AGAWSSLLGA 688 (882)
Q Consensus 615 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~---~eA~~~~~~m~-~~p~~--~~~~~~ll~a 688 (882)
.+++.+...+++++|.+.|+..... -+.+..++..+..+|.+.++. ++|..++++.- ..|.. ...|..|+.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7988736999999999999998832--99989999999999998512678999999999998606993199999999999
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 982275159999999976479999712998999999
Q 002772 689 CRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYS 724 (882)
Q Consensus 689 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 724 (882)
|...|+.+.|...++++++++|++.....++..+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999731699999999999769098999999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=0.00014 Score=42.75 Aligned_cols=62 Identities=8% Similarity=-0.045 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 48999999982275159999999976479999712998999999769905899999999847
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
++..+..++...|+.+.|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002231034677799998722299999999999972
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=6.2e-05 Score=44.96 Aligned_cols=79 Identities=5% Similarity=-0.124 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 68999999862049979999999829-99999110489999999822751599999999764799997129989999997
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS 725 (882)
Q Consensus 647 ~~~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 725 (882)
..|..+..++.+.|++++|+..+.+. ...|+....|..++.++...|+.+.|...++++++++|++..++..|..++..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99998999998640210136665544310002236777699999980479999999999998598999999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=3.7e-05 Score=46.42 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9911048999999982275159999999976479999712998999999769905899999999847
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
|.....|..+..++...|+.+.|...++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0239999989999986402101366655443100022367776999999804799999999999985
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=0.0002 Score=41.79 Aligned_cols=70 Identities=10% Similarity=-0.068 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99999862049979999999829-99999110489999999822751599999999764799997129989
Q 002772 650 ACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLL 719 (882)
Q Consensus 650 ~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 719 (882)
..+..+|.+.|++++|++.++.. ...|+....|..++.++...|+.+.|...++++++++|+++.+...+
T Consensus 71 ~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 71 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 61999999846530111010001000000012467768999996899999999999998298989999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2.8e-05 Score=47.15 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=7.6
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999815992689999999998
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~ 598 (882)
+..+|.+.|++++|++.|+++++
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997316999999999997
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.79 E-value=0.0007 Score=38.24 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4899999998227515999999997647999971299899999976990589999999984
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKE 741 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 741 (882)
++..+..++...++.+.|...++++++++|++...|..++.+|...|++++|...+++...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9984999987762201100022322201310488999889999882789999999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00014 Score=42.81 Aligned_cols=56 Identities=11% Similarity=-0.084 Sum_probs=22.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999815992689999999998199998656785579999999741188899999999808
Q 002772 576 IIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 576 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
+...|...|++++|++.|++.++.+ +.+...+..+..++...|++++|+..++.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998599999999999998849------6458999868899988186077899999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.67 E-value=0.0012 Score=36.82 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 48999999982275159999999976479999712998999999769905899999999847
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEM 742 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 742 (882)
.+..+..++...|+.+.|...++++++++|.+...|..++.+|...|+|++|...+++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99619999998465301110100010000000124677689999968999999999999982
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.67 E-value=0.0012 Score=36.79 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----CCCCHHHHHHHHHHHHCC
Q ss_conf 51599999999764799997129989999997----699058999999998479
Q 002772 694 NVEIGEIAAQNLFLLEPDVASHYVLLSNIYSS----AQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 694 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g 743 (882)
|.+.|...++++.+.. ++..+..|+.+|.. ..+.++|.+.+++....|
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 0344454676653036--899999999999839997618999999999999876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00041 Score=39.74 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 48999999982275159999999976479999712998999999769905899999999
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKM 739 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 739 (882)
.|..+..++...|+.+.+...++++++++|.+...|..++.+|...|++++|.+.+++.
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999988799057899999999849851999999999999855799999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.0014 Score=36.40 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 689999998620499799999998
Q 002772 647 DHYACVVDLLGRAGKVEDAYQLIN 670 (882)
Q Consensus 647 ~~~~~li~~l~~~g~~~eA~~~~~ 670 (882)
...+++.++|...++.+.-.+.++
T Consensus 281 ~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999867124678999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.48 E-value=0.00054 Score=38.99 Aligned_cols=53 Identities=8% Similarity=-0.028 Sum_probs=20.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9981599268999999999819999865678-55799999997411888999999998087
Q 002772 579 AYGMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSGMVSEGMDLFYKMKD 638 (882)
Q Consensus 579 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 638 (882)
.+.+.|++++|+..|++.+... |+ ...+..+..++.+.|++++|+..|+...+
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 78 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARM 78 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9998760589999886101121-------11100123354564101258774100000111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00087 Score=37.64 Aligned_cols=87 Identities=7% Similarity=0.006 Sum_probs=38.1
Q ss_pred HHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC-------HHHHHHHHHH
Q ss_conf 99862049979999999829-999991104899999998227515999999997647999971-------2998999999
Q 002772 653 VDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVAS-------HYVLLSNIYS 724 (882)
Q Consensus 653 i~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~l~~~y~ 724 (882)
.+.+.+.|++++|.+.+.+. ...|+....|..+..++...|+.+.|...++++++++|+++. +|..++.++.
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999859999999999999884964589998688999881860778999999998680127889889999999999999
Q ss_pred HCCCCHHHHHHHHHH
Q ss_conf 769905899999999
Q 002772 725 SAQLWDKAMDVRKKM 739 (882)
Q Consensus 725 ~~g~~~~a~~~~~~m 739 (882)
..+++++|...+++.
T Consensus 91 ~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 91 KEEKYKDAIHFYNKS 105 (128)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHH
T ss_conf 938899999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.45 E-value=0.00021 Score=41.64 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=63.1
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 81599268999999999819999865678-557999999974118----------8899999999808721998893689
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPN-EVTFIALFAACSHSG----------MVSEGMDLFYKMKDDYGIEPSPDHY 649 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~p~-~~t~~~ll~a~~~~g----------~~~~a~~~~~~m~~~~~~~p~~~~~ 649 (882)
-+.+.+++|+..|+..++.. |+ ...+..+..++...+ .+++|+..|+++.+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~----------- 69 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----------- 69 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 98736999999999998618-------831089999999998762133336778878889999999887-----------
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 9999986204997999999982999999110489999999822-----------75159999999976479999712998
Q 002772 650 ACVVDLLGRAGKVEDAYQLINMMPPEFDKAGAWSSLLGACRIH-----------QNVEIGEIAAQNLFLLEPDVASHYVL 718 (882)
Q Consensus 650 ~~li~~l~~~g~~~eA~~~~~~m~~~p~~~~~~~~ll~a~~~~-----------~~~~~a~~~~~~~~~l~p~~~~~~~~ 718 (882)
..|+....|..++.++... ++.+.|...++++++++|++..++..
T Consensus 70 ------------------------l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~ 125 (145)
T d1zu2a1 70 ------------------------IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 125 (145)
T ss_dssp ------------------------HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------------------------HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf ------------------------30120587766899998701011357889886787631211000259888999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999976990589999999984799
Q 002772 719 LSNIYSSAQLWDKAMDVRKKMKEMGV 744 (882)
Q Consensus 719 l~~~y~~~g~~~~a~~~~~~m~~~g~ 744 (882)
|.... +|..+..+..++|+
T Consensus 126 L~~~~-------ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 126 LEMTA-------KAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHH-------THHHHHHHHHHSSS
T ss_pred HHHHH-------HHHHHHHHHHHHHC
T ss_conf 99999-------97978999998735
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=0.00029 Score=40.73 Aligned_cols=126 Identities=13% Similarity=-0.003 Sum_probs=68.6
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCC
Q ss_conf 81599268999999999819999865678557999999974118889999999980872199889-36899999986204
Q 002772 581 GMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKDDYGIEPS-PDHYACVVDLLGRA 659 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~l~~~ 659 (882)
...|++++|++.+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...
T Consensus 7 L~~G~l~eAl~~l~~al~~~------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA 77 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHC
T ss_conf 88889999999999999978------999999999999999879999999999999986---997389999999999834
Q ss_pred CCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 9979999999829--9999911048999999982275159999999976479999712
Q 002772 660 GKVEDAYQLINMM--PPEFDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 660 g~~~eA~~~~~~m--~~~p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
+..+++..-.... ...|+....+...+..+...|+.+.|...++++.++.|..+..
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6637899875444203586479999999999996799899999999998339999810
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.24 E-value=0.00017 Score=42.20 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=80.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 74118889999999980872199889368999999862049979999999829-99999110489999999822751599
Q 002772 620 CSHSGMVSEGMDLFYKMKDDYGIEPSPDHYACVVDLLGRAGKVEDAYQLINMM-PPEFDKAGAWSSLLGACRIHQNVEIG 698 (882)
Q Consensus 620 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~l~~~g~~~eA~~~~~~m-~~~p~~~~~~~~ll~a~~~~~~~~~a 698 (882)
....|++++|+..+++.++ .-+-+...+..+..+|++.|++++|...++.. ...|+....+..+.......+..+.+
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 9888899999999999999--78999999999999999879999999999999986997389999999999834663789
Q ss_pred HHHHHH-HHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 999999-764799997129989999997699058999999998479
Q 002772 699 EIAAQN-LFLLEPDVASHYVLLSNIYSSAQLWDKAMDVRKKMKEMG 743 (882)
Q Consensus 699 ~~~~~~-~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 743 (882)
...... .+..+|+....+...+..+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9875444203586479999999999996799899999999998339
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.005 Score=32.80 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCCCCH
Q ss_conf 02899999998159926899999999981999986567855799999997411888999999998087----21998893
Q 002772 571 ITWNVIIMAYGMHGEGQEVLELLKNMVAEGSRGGEVKPNEVTFIALFAACSHSGMVSEGMDLFYKMKD----DYGIEPSP 646 (882)
Q Consensus 571 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~ 646 (882)
..+..+...+...|++++|+..+++++... +-+...+..++.++...|+..+|++.|+.+.. ..|+.|+.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 999999999988799057899999999849------85199999999999985579999999999999989984899689
Q ss_pred HHHH
Q ss_conf 6899
Q 002772 647 DHYA 650 (882)
Q Consensus 647 ~~~~ 650 (882)
.+-.
T Consensus 142 ~l~~ 145 (179)
T d2ff4a2 142 TLRA 145 (179)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.10 E-value=0.00016 Score=42.32 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC-----------CHHHHHHHHHHHH
Q ss_conf 751599999999764799997129989999997699-----------0589999999984
Q 002772 693 QNVEIGEIAAQNLFLLEPDVASHYVLLSNIYSSAQL-----------WDKAMDVRKKMKE 741 (882)
Q Consensus 693 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~-----------~~~a~~~~~~m~~ 741 (882)
+.++.|...++++++++|+++..|..++++|...|+ +++|.+.+++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 878889999999887301205877668999987010113578898867876312110002
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.84 E-value=0.0031 Score=34.08 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=8.5
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 815992689999999998
Q 002772 581 GMHGEGQEVLELLKNMVA 598 (882)
Q Consensus 581 ~~~g~~~~A~~l~~~m~~ 598 (882)
...|++++|++.|++.++
T Consensus 20 ~~~g~y~~Ai~~y~~Al~ 37 (156)
T d2hr2a1 20 LVAGEYDEAAANCRRAME 37 (156)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
T ss_conf 985999999999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0035 Score=33.81 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9911048999999982275159999999976479999712998999
Q 002772 676 FDKAGAWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASHYVLLSN 721 (882)
Q Consensus 676 p~~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 721 (882)
++...++..|..++...|+.+.|...++++++++|+++.++..+..
T Consensus 43 ~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6478999987268886577398887887798869297999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.75 E-value=0.011 Score=30.64 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 268999999999
Q 002772 586 GQEVLELLKNMV 597 (882)
Q Consensus 586 ~~~A~~l~~~m~ 597 (882)
.++|+.+|++..
T Consensus 198 ~~~A~~~~~~aa 209 (265)
T d1ouva_ 198 FKEALARYSKAC 209 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 344454676653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.62 E-value=0.009 Score=31.15 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=4.1
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8889999999980
Q 002772 624 GMVSEGMDLFYKM 636 (882)
Q Consensus 624 g~~~~a~~~~~~m 636 (882)
|++++|+..|++.
T Consensus 23 g~y~~Ai~~y~~A 35 (156)
T d2hr2a1 23 GEYDEAAANCRRA 35 (156)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.60 E-value=0.014 Score=29.96 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=6.0
Q ss_pred HHHHHHHCCCHHHHHHHHH
Q ss_conf 9999872499688999984
Q 002772 427 LMDMYSRMGRIEISKTIFD 445 (882)
Q Consensus 427 Li~~y~~~g~~~~A~~~~~ 445 (882)
++..|-..|..++...+++
T Consensus 105 ~v~~ye~~~~~e~Li~~Le 123 (336)
T d1b89a_ 105 LINYYQDRGYFEELITMLE 123 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
T ss_conf 9999987698599999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.032 Score=27.61 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=8.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999741188899999999808
Q 002772 613 FIALFAACSHSGMVSEGMDLFYKMK 637 (882)
Q Consensus 613 ~~~ll~a~~~~g~~~~a~~~~~~m~ 637 (882)
+..+..++.+.|++++|...++++.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9987268886577398887887798
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.55 E-value=0.9 Score=18.38 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 48999999982275159999999976479999712
Q 002772 681 AWSSLLGACRIHQNVEIGEIAAQNLFLLEPDVASH 715 (882)
Q Consensus 681 ~~~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 715 (882)
.|-.|..+|...|+.+.|...++++++++|++...
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999998732999999999998239984999
|