Citrus Sinensis ID: 002790
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 881 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LNP2 | 731 | Putative pentatricopeptid | yes | no | 0.778 | 0.938 | 0.537 | 0.0 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.728 | 0.844 | 0.341 | 1e-117 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.683 | 0.770 | 0.342 | 1e-107 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.726 | 0.863 | 0.324 | 1e-107 | |
| Q9SV26 | 768 | Pentatricopeptide repeat- | no | no | 0.730 | 0.838 | 0.322 | 1e-105 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.681 | 0.860 | 0.312 | 1e-104 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.732 | 0.797 | 0.303 | 1e-104 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.763 | 0.856 | 0.327 | 1e-102 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.693 | 0.854 | 0.327 | 1e-102 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.787 | 0.816 | 0.319 | 1e-101 |
| >sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/699 (53%), Positives = 500/699 (71%), Gaps = 13/699 (1%)
Query: 13 SPSNPS-RPFSIITYNN--SLLDCFDHLLQQCKTIHQLKQVHNQLIVTG-ANASAFLAAR 68
SP S + +T NN SL FDHLL C T Q +QVH Q++++ S LAA
Sbjct: 35 SPDTVSVSSYYSLTSNNDQSLFHYFDHLLGLCLTAQQCRQVHAQVLLSDFIFRSGSLAAN 94
Query: 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGV 128
++S+YAR G L DARNVFET S LWNSIL+ NVS+GLYENAL+LY MR+ G+
Sbjct: 95 LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRGL 154
Query: 129 LGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMS 188
GDG+ PL++RAC+++G RF + H V+Q+G + N+H+VNEL+ +Y K G+M
Sbjct: 155 TGDGYILPLILRACRYLG----RFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMG 210
Query: 189 DSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHA 248
D++ LF ++ V+N +SWN+M GF+ +DC+ A+++F+ M+ E +P+ VTWTS+LS H+
Sbjct: 211 DAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHS 270
Query: 249 RCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVF 308
+CG+ E+ + F +MR G V EA+AV SVCA+L A + + +HG+VIKGGFE+Y+
Sbjct: 271 QCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLP 330
Query: 309 VKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368
+NALI VYGK G VK A++LF +I K I SWN+LITS+ +AG DEA+ +FS+LE+++
Sbjct: 331 SRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMN 390
Query: 369 GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL 428
+ NV++W++VI GRG+++L+ FR+MQ +KV+ANSVTI +LS+CAE AL
Sbjct: 391 HVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPAL 450
Query: 429 NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGY 488
N+GREIHGHV+R SM++NILVQN L+NMY KCG L EG LVFE I KDLI+WNS+I GY
Sbjct: 451 NLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGY 510
Query: 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ 548
GM+G E AL+ F+ MI +GF PDG+A VAVLSACSHAGLV +GR IF M + F +EPQ
Sbjct: 511 GMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQ 570
Query: 549 MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF 608
EHYAC+VDLLGR G L+EAS+IVKNMPMEP V G LLNSCRMHKN D+AE +ASQ+
Sbjct: 571 QEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLS 630
Query: 609 GLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGN 668
L E TGSYMLLSNIY+A GRWE++A VR AK K LKKV+G SWIEVK+K + FSSG+
Sbjct: 631 VLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKYKFSSGS 690
Query: 669 SLQSDLKNVCEVLEELALQMENKGCVPD-----NDIILW 702
+QS+ + + VLE+L M KG D +D+ LW
Sbjct: 691 IVQSEFETIYPVLEDLVSHMLKKGPTHDGNNYEDDLDLW 729
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/653 (34%), Positives = 369/653 (56%), Gaps = 11/653 (1%)
Query: 49 QVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNV 108
Q H +++ +GA +++A++++ Y+ + DA V ++ P + ++S++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIP---DPTIYSFSSLIYALT 92
Query: 109 SNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQ 168
L+ ++ ++ +M G++ D P + + C + +F+ G+ +H G
Sbjct: 93 KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKV----GKQIHCVSCVSGLD 148
Query: 169 GNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRM 228
+ + + MY + G+M D+ K+FD++ K+ ++ + + +A + + + M
Sbjct: 149 MDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEM 208
Query: 229 ELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAAD 288
E G+E N V+W +LS R G +E + +F + G ++ VL D
Sbjct: 209 ESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEML 268
Query: 289 HMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSY 348
+MG++IHG+VIK G V +A+I +YGK G V +LF++ E NA IT
Sbjct: 269 NMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGL 328
Query: 349 AEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV 408
+ GL D+A+E+F E +ME NV+SW+++I A NG+ EAL+LFR+MQ+A V
Sbjct: 329 SRNGLVDKALEMF---ELFKEQTMEL-NVVSWTSIIAGCAQNGKDIEALELFREMQVAGV 384
Query: 409 VANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468
N VTI +L C AAL GR HG VRV + N+ V + L++MY KCG + +
Sbjct: 385 KPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQI 444
Query: 469 VFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGL 528
VF + K+L+ WNS+++G+ M+G + ++ FE ++ KPD ++F ++LSAC GL
Sbjct: 445 VFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGL 504
Query: 529 VNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLL 588
+EG + F MM E+ I+P++EHY+CMV+LLGRAG LQEA D++K MP EP++ VWG LL
Sbjct: 505 TDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564
Query: 589 NSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKK 648
NSCR+ N D+AE A ++F L E G+Y+LLSNIYAA G W + +R ++ GLKK
Sbjct: 565 NSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKK 624
Query: 649 VAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIIL 701
G SWI+VK +++ +G+ + + E ++E++ +M G P+ D L
Sbjct: 625 NPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFAL 677
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/660 (34%), Positives = 364/660 (55%), Gaps = 58/660 (8%)
Query: 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGV 128
+S Y R GR +A VF+ P + SS+ +N ++ + NG +E A KL+ +M +
Sbjct: 70 AISSYMRTGRCNEALRVFKRMP---RWSSVSYNGMISGYLRNGEFELARKLFDEMPER-- 124
Query: 129 LGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMS 188
D ++ ++I+ G R R + G+ + ++ + +V N ++ YA+ G +
Sbjct: 125 --DLVSWNVMIK-----GYVRNR-NLGKA--RELFEIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 189 DSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEP------------- 235
D+ +FD++ KN +SWN + S + N + A LFK E L
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234
Query: 236 --------------NFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSV 281
+ V+W ++++ +A+ G+++E LFD E + + ++
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD-------ESPVQDVFTWTAM 287
Query: 282 CADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSW 341
+ + M + K + V NA++ Y + +++A+ LF + +N+ +W
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNEV-SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 342 NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFR 401
N +IT YA+ G EA +F ++ K D +SW+A+I ++ +G EAL LF
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRD--------PVSWAAMIAGYSQSGHSFEALRLFV 398
Query: 402 KMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCG 461
+M+ N + S LS CA+ AL +G+++HG +V+ V N LL MY KCG
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458
Query: 462 CLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLS 521
+EE + +F+++ KD+++WN+MI+GY +G GE AL FE M G KPD VAVLS
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 522 ACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNA 581
ACSH GLV++GR+ F M +++ + P +HYACMVDLLGRAGLL++A +++KNMP EP+A
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578
Query: 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641
+WGTLL + R+H NT++AE A +IF + E +G Y+LLSN+YA+SGRW D K+R+
Sbjct: 579 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 638
Query: 642 KTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIIL 701
+ KG+KKV G SWIE++ K H FS G+ + + LEEL L+M+ G V ++L
Sbjct: 639 RDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVL 698
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 228/702 (32%), Positives = 380/702 (54%), Gaps = 62/702 (8%)
Query: 9 PHQFSPSNPSRPFSIITYNNSLLDCFDHLLQQCKTIHQLKQVHNQLIVTGANASAFLAAR 68
P F PS+ P+ I + SL LL CKT+ L+ +H Q+I G + + + ++
Sbjct: 16 PFHFLPSSSDPPYDSIRNHPSL-----SLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSK 70
Query: 69 VLS---IYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRK 125
++ + F L A +VF+T + + L+WN++ R + + +ALKLYV M
Sbjct: 71 LIEFCILSPHFEGLPYAISVFKTIQ---EPNLLIWNTMFRGHALSSDPVSALKLYVCMIS 127
Query: 126 LGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMG 185
LG+L + +TFP V+++C +F+ GQ +H HVL++G ++++ LI MY + G
Sbjct: 128 LGLLPNSYTFPFVLKSCAKSKAFKE----GQQIHGHVLKLGCDLDLYVHTSLISMYVQNG 183
Query: 186 QMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLS 245
++ D+ K+FDK ++ +S+ + G+A + A +LF + ++ + V+W +++S
Sbjct: 184 RLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNAMIS 239
Query: 246 SHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFED 305
+A G +E ++LF M K + + V+S CA + +G+ +H ++ GF
Sbjct: 240 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFG- 298
Query: 306 YVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLE 365
N+ NALI Y++ G + A +F +L
Sbjct: 299 ------------------------------SNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 366 KLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAES 425
D VISW+ +IG + +EAL LF++M + N VT+ +L CA
Sbjct: 329 YKD--------VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380
Query: 426 AALNIGREIHGHV---VRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWN 482
A++IGR IH ++ ++ N + L + L++MY KCG +E H VF I K L +WN
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSL-RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439
Query: 483 SMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVRE 542
+MI G+ M+G + + F M + G +PD + FV +LSACSH+G+++ GR IF M ++
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD 499
Query: 543 FRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEA 602
+++ P++EHY CM+DLLG +GL +EA +++ M MEP+ +W +LL +C+MH N ++ E+
Sbjct: 500 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGES 559
Query: 603 MASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIH 662
A + + E GSY+LLSNIYA++GRW + AK R KG+KKV G S IE+ +H
Sbjct: 560 FAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619
Query: 663 MFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEM 704
F G+ + + +LEE+ + +E G VPD +L EM
Sbjct: 620 EFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEM 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/683 (32%), Positives = 371/683 (54%), Gaps = 39/683 (5%)
Query: 50 VHNQLIVTG-ANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNV 108
+H LI G N+ + + + Y R L A +F+ P K L WN I+ VN+
Sbjct: 9 IHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMP---KRDDLAWNEIVMVNL 65
Query: 109 SNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQ 168
+G +E A++L+ +M+ G T +++ C S + F+ G+ +H +VL++G +
Sbjct: 66 RSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVC----SNKEGFAEGRQIHGYVLRLGLE 121
Query: 169 GNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRM 228
NV + N LI MY++ G++ S K+F+ ++ +N SWN + S + D A+ L M
Sbjct: 122 SNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEM 181
Query: 229 ELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAAD 288
E+ GL+P+ VTW SLLS +A G ++ + + M+ G++ +I+ +L A+
Sbjct: 182 EICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHL 241
Query: 289 HMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSY 348
+GK IHG++++ V+V+ LI +Y K G + A+ +F ++ KNIV+WN+L++
Sbjct: 242 KLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGL 301
Query: 349 AEAGLCDEAVEVFSQLEK--------------------------LD--GGSMER---PNV 377
+ A L +A + ++EK LD G E+ PNV
Sbjct: 302 SYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNV 361
Query: 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGH 437
+SW+A+ + NG AL +F KMQ V N+ T+S LL + + L+ G+E+HG
Sbjct: 362 VSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGF 421
Query: 438 VVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENA 497
+R ++ + V L++MY K G L+ +F I+ K L +WN M+ GY M G GE
Sbjct: 422 CLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEG 481
Query: 498 LATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557
+A F M+EAG +PD + F +VLS C ++GLV EG + FD+M + I P +EH +CMVD
Sbjct: 482 IAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVD 541
Query: 558 LLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617
LLGR+G L EA D ++ M ++P+A +WG L+SC++H++ ++AE ++ L + +
Sbjct: 542 LLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSAN 601
Query: 618 YMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNV 677
YM++ N+Y+ RWED ++R + ++ SWI++ + +H+F + D ++
Sbjct: 602 YMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDI 661
Query: 678 CEVLEELALQMENKGCVPDNDII 700
L +L +M+ G VPD I
Sbjct: 662 YFELYKLVSEMKKSGYVPDTSCI 684
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/687 (31%), Positives = 361/687 (52%), Gaps = 87/687 (12%)
Query: 47 LKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAP---------------- 90
++ VH +I +G + F+ R++ Y++ G L D R VF+ P
Sbjct: 39 VRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTK 98
Query: 91 --FDCKSSSLL----------WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLV 138
F ++ SL WNS++ + E AL + M K G + + ++F V
Sbjct: 99 LGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASV 158
Query: 139 IRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR 198
+ AC + + G VH+ + + F +V+I + L+ MY+K G ++D+ ++FD++
Sbjct: 159 LSACSGLNDM----NKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG 214
Query: 199 VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMD 258
+N +S W SL++ + G E +D
Sbjct: 215 DRNVVS-----------------------------------WNSLITCFEQNGPAVEALD 239
Query: 259 LFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGG-FEDYVFVKNALICVY 317
+F MM + +E +A V+S CA L+A +G+ +HG V+K + + + NA + +Y
Sbjct: 240 VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY 299
Query: 318 GKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV 377
K +K A+ +F + +N+++ ++I+ YA A A +F++ M NV
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK--------MAERNV 351
Query: 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGH 437
+SW+A+I + NG EEAL LF ++ V + + +L CA+ A L++G + H H
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 438 VVRVSMN------KNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMN 491
V++ +I V N L++MY+KCGC+EEG+LVF ++ ++D ++WN+MI G+ N
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471
Query: 492 GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH 551
G G AL F EM+E+G KPD + + VLSAC HAG V EGR F M R+F + P +H
Sbjct: 472 GYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH 531
Query: 552 YACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI 611
Y CMVDLLGRAG L+EA +++ MPM+P++ +WG+LL +C++H+N + + +A ++ +
Sbjct: 532 YTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVE 591
Query: 612 TETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQ 671
+G Y+LLSN+YA G+WED VR S + +G+ K G SWI+++ H+F +
Sbjct: 592 PSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSH 651
Query: 672 SDLKNVCEVLEELALQMENKGCVPDND 698
K + +L+ L +M P+ D
Sbjct: 652 PRKKQIHSLLDILIAEMR-----PEQD 673
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 233/767 (30%), Positives = 391/767 (50%), Gaps = 122/767 (15%)
Query: 11 QFS-----PSNPSRPFSIITYNNSL-LDCFDH----LLQQCKTIHQLKQVHNQLIVTGAN 60
QFS P+ PSR ++ N + + ++H LL++C ++ +L+Q+ + G
Sbjct: 7 QFSTVPQIPNPPSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLY 66
Query: 61 ASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLY 120
F +++S++ R+G + +A VFE P D K ++L++++L+ + AL+ +
Sbjct: 67 QEHFFQTKLVSLFCRYGSVDEAARVFE--PIDSK-LNVLYHTMLKGFAKVSDLDKALQFF 123
Query: 121 VKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGM 180
V+MR V + F +++ C R G+ +H +++ GF ++ + L M
Sbjct: 124 VRMRYDDVEPVVYNFTYLLKVCGDEAELR----VGKEIHGLLVKSGFSLDLFAMTGLENM 179
Query: 181 YAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTW 240
YAK Q++++ K+FD++ ++ +SWN + +G++ N ALE+ K M E L+P+F+T
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITI 239
Query: 241 TSLLSS-----------------------------------HARCGRLEETMDLFDMMRK 265
S+L + +A+CG LE LFD M +
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE 299
Query: 266 RGI-------------EVGAEAIAV------------------VLSVCADLAADHMGKVI 294
R + E EA+ + L CADL G+ I
Sbjct: 300 RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359
Query: 295 HGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLC 354
H ++ G + V V N+LI +Y K +V A ++F +++ + +VSWNA+I +A+ G
Sbjct: 360 HKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRP 419
Query: 355 DEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVT 414
+A+ FSQ+ +P+ ++ +VI A
Sbjct: 420 IDALNYFSQMR----SRTVKPDTFTYVSVITAI--------------------------- 448
Query: 415 ISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE 474
AE + + + IHG V+R ++KN+ V L++MY KCG + L+F+ +
Sbjct: 449 --------AELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500
Query: 475 KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRR 534
++ + TWN+MI GYG +G G+ AL FEEM + KP+GV F++V+SACSH+GLV G +
Sbjct: 501 ERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLK 560
Query: 535 IFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMH 594
F MM + IE M+HY MVDLLGRAG L EA D + MP++P V+G +L +C++H
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIH 620
Query: 595 KNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSW 654
KN + AE A ++F L + G ++LL+NIY A+ WE +VR+S +GL+K G S
Sbjct: 621 KNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSM 680
Query: 655 IEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIIL 701
+E+K ++H F SG++ D K + LE+L ++ G VPD +++L
Sbjct: 681 VEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/737 (32%), Positives = 396/737 (53%), Gaps = 64/737 (8%)
Query: 50 VHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSIL----- 104
VH ++I +G S +L ++++Y++ G AR +F+ P ++ WN++L
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPL---RTAFSWNTVLSAYSK 92
Query: 105 ----------------RVNVS----------NGLYENALKLYVKMRKLGVLGDGFTFPLV 138
R +VS G Y A+++ M K G+ FT V
Sbjct: 93 RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152
Query: 139 ---IRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFD 195
+ A + M + G+ VH+ ++++G +GNV + N L+ MYAK G + +FD
Sbjct: 153 LASVAATRCMET-------GKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFD 205
Query: 196 KVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEE 255
++ V++ SWN M + D A+ F++M E + VTW S++S + G
Sbjct: 206 RMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA----ERDIVTWNSMISGFNQRGYDLR 261
Query: 256 TMDLFD-MMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALI 314
+D+F M+R + +A VLS CA+L +GK IH ++ GF+ V NALI
Sbjct: 262 ALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321
Query: 315 CVYGKHGDVKVAQNLFSEIEEKN--IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSM 372
+Y + G V+ A+ L + K+ I + AL+ Y + G ++A +F L+ D
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD---- 377
Query: 373 ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGR 432
V++W+A+I + +G EA++LFR M NS T++ +LSV + A+L+ G+
Sbjct: 378 ----VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGK 433
Query: 433 EIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE-KKDLITWNSMISGYGMN 491
+IHG V+ ++ V N L+ MY K G + F+ I ++D ++W SMI +
Sbjct: 434 QIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQH 493
Query: 492 GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH 551
G E AL FE M+ G +PD + +V V SAC+HAGLVN+GR+ FDMM +I P + H
Sbjct: 494 GHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553
Query: 552 YACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI 611
YACMVDL GRAGLLQEA + ++ MP+EP+ WG+LL++CR+HKN D+ + A ++ L
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLE 613
Query: 612 TETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQ 671
E +G+Y L+N+Y+A G+WE+AAK+R S K +KK G SWIEVK K+H+F +
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTH 673
Query: 672 SDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVK-RIQRIRADNIKSKHRIVGF 730
+ + ++++ +++ G VPD +L ++ ++ VK +I R ++ + ++
Sbjct: 674 PEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDL--EEEVKEQILRHHSEKLAIAFGLIST 731
Query: 731 RNLKLGLRLLLSLRSTN 747
+ K LR++ +LR N
Sbjct: 732 PD-KTTLRIMKNLRVCN 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/669 (32%), Positives = 366/669 (54%), Gaps = 58/669 (8%)
Query: 42 KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLL-W 100
K+ Q KQ+H Q I T + S A+ V+SIY L +A +F+T KS +L W
Sbjct: 19 KSKSQAKQLHAQFIRT-QSLSHTSASIVISIYTNLKLLHEALLLFKT----LKSPPVLAW 73
Query: 101 NSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHN 160
S++R L+ AL +V+MR G D FP V+++C M RF G+ VH
Sbjct: 74 KSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRF----GESVHG 129
Query: 161 HVLQMGFQGNVHIVNELIGMYAK---MGQMSDSFKLFDKV--RVKNYISWNMMFSGFALN 215
++++G +++ N L+ MYAK MG +FD++ R N ++ +
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 216 FDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAI 275
F D +F+ M + V++ ++++ +A+ G E+ + + M ++ + +
Sbjct: 190 FGIDSVRRVFEVMP----RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTL 245
Query: 276 AVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE 335
+ VL + ++ GK IHG+VI+ G + V++ ++L+ +Y K +
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI------------ 293
Query: 336 KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEE 395
+++ VFS+L DG ISW++++ + NGR E
Sbjct: 294 -------------------EDSERVFSRLYCRDG--------ISWNSLVAGYVQNGRYNE 326
Query: 396 ALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455
AL LFR+M AKV +V S ++ CA A L++G+++HG+V+R NI + + L++
Sbjct: 327 ALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVD 386
Query: 456 MYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVA 515
MY KCG ++ +F+++ D ++W ++I G+ ++G G A++ FEEM G KP+ VA
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 446
Query: 516 FVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575
FVAVL+ACSH GLV+E F+ M + + + ++EHYA + DLLGRAG L+EA + + M
Sbjct: 447 FVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKM 506
Query: 576 PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAA 635
+EP VW TLL+SC +HKN ++AE +A +IF + +E G+Y+L+ N+YA++GRW++ A
Sbjct: 507 CVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMA 566
Query: 636 KVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVP 695
K+R+ + KGL+K SWIE+K K H F SG+ + + E L+ + QME +G V
Sbjct: 567 KLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVA 626
Query: 696 DNDIILWEM 704
D +L ++
Sbjct: 627 DTSGVLHDV 635
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 245/768 (31%), Positives = 395/768 (51%), Gaps = 74/768 (9%)
Query: 34 FDHLLQQCKTIHQLK---QVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVF-ETA 89
F + + C I ++ H +VTG ++ F+ ++++Y+R L DAR VF E +
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189
Query: 90 PFDCKSSSLLWNSILRVNVSNGLYENALKLYVKM-RKLGVLGDGFTFPLVIRACKFMGSF 148
+D S WNSI+ G + AL+++ +M + G D T V+ C +G+
Sbjct: 190 VWDVVS----WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTH 245
Query: 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMM 208
S G+ +H + N+ + N L+ MYAK G M ++ +F + VK+ +SWN M
Sbjct: 246 ----SLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAM 301
Query: 209 FSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGI 268
+G++ + A+ LF++M+ E ++ + VTW++ +S +A+ G E + + M GI
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361
Query: 269 EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328
+ + VLS CA + A GK IH + IK + KN HGD
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID---LRKNG-------HGD------ 405
Query: 329 LFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388
+N+V N LI YA+ D A +F L S + +V++W+ +IG ++
Sbjct: 406 -------ENMVI-NQLIDMYAKCKKVDTARAMFDSL------SPKERDVVTWTVMIGGYS 451
Query: 389 SNGRGEEALDLFRKM--QLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNK- 445
+G +AL+L +M + + N+ TIS L CA AAL IG++IH + +R N
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511
Query: 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMI 505
+ V N L++MY KCG + + LVF+ + K+ +TW S+++GYGM+G GE AL F+EM
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571
Query: 506 EAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLL 565
GFK DGV + VL ACSH+G++++G F+ M F + P EHYAC+VDLLGRAG L
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 566 QEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIY 625
A +++ MPMEP VW L+ CR+H ++ E A +I L + GSY LLSN+Y
Sbjct: 632 NAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLY 691
Query: 626 AASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELA 685
A +GRW+D ++R + KG+KK G SW+E + F G+ K + +VL +
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHM 751
Query: 686 LQMENKGCVPDNDIILWEMMGKKNVKRIQRIRADNIKSKHRIVGFRNLKLGLRLLLSLRS 745
++++ G VP+ L ++ ++ D++ +H L L +L + +
Sbjct: 752 QRIKDIGYVPETGFALHDVDDEEK---------DDLLFEHS----EKLALAYGILTTPQG 798
Query: 746 TNGQLMKNKLKLGLVVFNLSLKLFND---AVTATNRVISSDIRLENDS 790
++ KN L++ D A T +R+I DI L + S
Sbjct: 799 AAIRITKN------------LRVCGDCHTAFTYMSRIIDHDIILRDSS 834
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 881 | ||||||
| 359482518 | 1753 | PREDICTED: uncharacterized protein LOC10 | 0.774 | 0.389 | 0.664 | 0.0 | |
| 147856499 | 954 | hypothetical protein VITISV_031739 [Viti | 0.774 | 0.714 | 0.664 | 0.0 | |
| 297743088 | 708 | unnamed protein product [Vitis vinifera] | 0.774 | 0.963 | 0.664 | 0.0 | |
| 356558692 | 696 | PREDICTED: putative pentatricopeptide re | 0.766 | 0.969 | 0.613 | 0.0 | |
| 449458231 | 705 | PREDICTED: putative pentatricopeptide re | 0.755 | 0.944 | 0.604 | 0.0 | |
| 255572939 | 621 | pentatricopeptide repeat-containing prot | 0.651 | 0.924 | 0.664 | 0.0 | |
| 15220808 | 731 | pentatricopeptide repeat-containing prot | 0.778 | 0.938 | 0.537 | 0.0 | |
| 297844718 | 763 | pentatricopeptide repeat-containing prot | 0.768 | 0.887 | 0.538 | 0.0 | |
| 330689867 | 644 | putative pentatricopeptide protein [Trit | 0.684 | 0.936 | 0.436 | 1e-150 | |
| 414875841 | 641 | TPA: hypothetical protein ZEAMMB73_03855 | 0.673 | 0.925 | 0.440 | 1e-148 |
| >gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/689 (66%), Positives = 562/689 (81%), Gaps = 7/689 (1%)
Query: 12 FSPSNPSRPFSIITY--NNSLLDCFDHLLQQCKTIHQLKQVHNQLIVTGANASAFLAARV 69
F P N SR SII + NN +LD F+ LLQQC H +Q+H+Q+IVTG++ SAFLAARV
Sbjct: 852 FLP-NLSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARV 910
Query: 70 LSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVL 129
+S+YA FG + DA+ VFE +P +C S+ LLWNSILR NV++G E AL++Y +MRKLGV
Sbjct: 911 VSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVS 970
Query: 130 GDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSD 189
DGFTFPLVIRAC MGS + S VH HV++MGFQ N+H+ NEL+GMY K+G+M D
Sbjct: 971 ADGFTFPLVIRACALMGSRKLCRS----VHGHVVEMGFQWNLHVGNELMGMYGKIGRMDD 1026
Query: 190 SFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHAR 249
+ K+F+++ V++ +SWN M SG+ALN+DC GA E+F+ M GLEPN VTWTSLLSSHAR
Sbjct: 1027 ARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHAR 1086
Query: 250 CGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFV 309
CG+ ETM+LF MR RGI AEA+AVVLSV DLAA GKVIHG+V+KGGFE+Y+FV
Sbjct: 1087 CGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFV 1146
Query: 310 KNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDG 369
KN+LIC+YGKHG+V A+ LF EI+ KNIVSWNALI+SYA+ G CDEA +F QLEK D
Sbjct: 1147 KNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDE 1206
Query: 370 GSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALN 429
M RPNV+SWSAVIG FAS G+GEEAL+LFR+MQLAKV ANSVTI+ +LSVCAE AAL+
Sbjct: 1207 YPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALH 1266
Query: 430 IGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYG 489
+GREIHGHVVR M+ NILV NGL+NMY K G +EG+LVFE+IE KDLI+WN+M++GYG
Sbjct: 1267 LGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 1326
Query: 490 MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM 549
++GLGENA+ TF++MI+ GF+PDGV FVAVLSACSHAGLV EGR +FD M++EFR+EPQM
Sbjct: 1327 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQM 1386
Query: 550 EHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609
EHYACMVDLLGRAGLLQEAS +VK+MP+EPNA VWG LLNSCRMHKNT+VAE ASQIF
Sbjct: 1387 EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFN 1446
Query: 610 LITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNS 669
L +E GSYMLLSNIYAASGRWED+AKVRISAKTKGLKK GQSWI+VK+K++MFS+GN+
Sbjct: 1447 LNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNT 1506
Query: 670 LQSDLKNVCEVLEELALQMENKGCVPDND 698
++L+ V +L++L LQME +G +PD D
Sbjct: 1507 QHAELEEVYRILKDLGLQMEVEGYIPDID 1535
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/689 (66%), Positives = 562/689 (81%), Gaps = 7/689 (1%)
Query: 12 FSPSNPSRPFSIITY--NNSLLDCFDHLLQQCKTIHQLKQVHNQLIVTGANASAFLAARV 69
F P N SR SII + NN +LD F+ LLQQC H +Q+H+Q+IVTG++ SAFLAARV
Sbjct: 14 FLP-NLSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARV 72
Query: 70 LSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVL 129
+S+YA FG + DA+ VFE +P +C S+ LLWNSILR NV++G E AL++Y +MRKLGV
Sbjct: 73 VSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVS 132
Query: 130 GDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSD 189
DGFTFPLVIRAC MGS + S VH HV++MGFQ N+H+ NEL+GMY K+G+M D
Sbjct: 133 ADGFTFPLVIRACALMGSRKLCRS----VHGHVVEMGFQWNLHVGNELMGMYGKIGRMDD 188
Query: 190 SFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHAR 249
+ K+F+++ V++ +SWN M SG+ALN+DC GA E+F+ M GLEPN VTWTSLLSSHAR
Sbjct: 189 ARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHAR 248
Query: 250 CGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFV 309
CG+ ETM+LF MR RGI AEA+AVVLSV DLAA GKVIHG+V+KGGFE+Y+FV
Sbjct: 249 CGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFV 308
Query: 310 KNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDG 369
KN+LIC+YGKHG+V A+ LF EI+ KNIVSWNALI+SYA+ G CDEA +F QLEK D
Sbjct: 309 KNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDE 368
Query: 370 GSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALN 429
M RPNV+SWSAVIG FAS G+GEEAL+LFR+MQLAKV ANSVTI+ +LSVCAE AAL+
Sbjct: 369 YPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALH 428
Query: 430 IGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYG 489
+GREIHGHVVR M+ NILV NGL+NMY K G +EG+LVFE+IE KDLI+WN+M++GYG
Sbjct: 429 LGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 488
Query: 490 MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM 549
++GLGENA+ TF++MI+ GF+PDGV FVAVLSACSHAGLV EGR +FD M++EFR+EPQM
Sbjct: 489 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQM 548
Query: 550 EHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609
EHYACMVDLLGRAGLLQEAS +VK+MP+EPNA VWG LLNSCRMHKNT+VAE ASQIF
Sbjct: 549 EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFN 608
Query: 610 LITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNS 669
L +E GSYMLLSNIYAASGRWED+AKVRISAKTKGLKK GQSWI+VK+K++MFS+GN+
Sbjct: 609 LNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNT 668
Query: 670 LQSDLKNVCEVLEELALQMENKGCVPDND 698
++L+ V +L++L LQME +G +PD D
Sbjct: 669 QHAELEEVYRILKDLGLQMEVEGYIPDID 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/689 (66%), Positives = 562/689 (81%), Gaps = 7/689 (1%)
Query: 12 FSPSNPSRPFSIITY--NNSLLDCFDHLLQQCKTIHQLKQVHNQLIVTGANASAFLAARV 69
F P N SR SII + NN +LD F+ LLQQC H +Q+H+Q+IVTG++ SAFLAARV
Sbjct: 14 FLP-NLSRSISIIHHQPNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARV 72
Query: 70 LSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVL 129
+S+YA FG + DA+ VFE +P +C S+ LLWNSILR NV++G E AL++Y +MRKLGV
Sbjct: 73 VSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVS 132
Query: 130 GDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSD 189
DGFTFPLVIRAC MGS + S VH HV++MGFQ N+H+ NEL+GMY K+G+M D
Sbjct: 133 ADGFTFPLVIRACALMGSRKLCRS----VHGHVVEMGFQWNLHVGNELMGMYGKIGRMDD 188
Query: 190 SFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHAR 249
+ K+F+++ V++ +SWN M SG+ALN+DC GA E+F+ M GLEPN VTWTSLLSSHAR
Sbjct: 189 ARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHAR 248
Query: 250 CGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFV 309
CG+ ETM+LF MR RGI AEA+AVVLSV DLAA GKVIHG+V+KGGFE+Y+FV
Sbjct: 249 CGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFV 308
Query: 310 KNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDG 369
KN+LIC+YGKHG+V A+ LF EI+ KNIVSWNALI+SYA+ G CDEA +F QLEK D
Sbjct: 309 KNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDE 368
Query: 370 GSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALN 429
M RPNV+SWSAVIG FAS G+GEEAL+LFR+MQLAKV ANSVTI+ +LSVCAE AAL+
Sbjct: 369 YPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALH 428
Query: 430 IGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYG 489
+GREIHGHVVR M+ NILV NGL+NMY K G +EG+LVFE+IE KDLI+WN+M++GYG
Sbjct: 429 LGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 488
Query: 490 MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM 549
++GLGENA+ TF++MI+ GF+PDGV FVAVLSACSHAGLV EGR +FD M++EFR+EPQM
Sbjct: 489 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQM 548
Query: 550 EHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609
EHYACMVDLLGRAGLLQEAS +VK+MP+EPNA VWG LLNSCRMHKNT+VAE ASQIF
Sbjct: 549 EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFN 608
Query: 610 LITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNS 669
L +E GSYMLLSNIYAASGRWED+AKVRISAKTKGLKK GQSWI+VK+K++MFS+GN+
Sbjct: 609 LNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNT 668
Query: 670 LQSDLKNVCEVLEELALQMENKGCVPDND 698
++L+ V +L++L LQME +G +PD D
Sbjct: 669 QHAELEEVYRILKDLGLQMEVEGYIPDID 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/683 (61%), Positives = 535/683 (78%), Gaps = 8/683 (1%)
Query: 19 RPFSIITY--NNSLLDCFDHLLQQCKTIHQLKQVHNQLIVTGANASAFLAARVLSIYARF 76
+P +I++ N+ L+ F Q+C T+ Q +Q+H+QL++T A+ FLAAR++++YARF
Sbjct: 17 QPIFLISHVHNDELIYSFHAFFQRCFTLQQARQLHSQLVLTTAHRLPFLAARLIAVYARF 76
Query: 77 GRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFP 136
L AR VF+ P + LLWNSI+R NVS+G +++AL+LYV+MRKLG L DGFT P
Sbjct: 77 AFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLP 136
Query: 137 LVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDK 196
LVIRAC +GS +IVH H LQMGF+ ++H+VNEL+GMY K+G+M D+ +LFD
Sbjct: 137 LVIRACSSLGSS----YLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDG 192
Query: 197 VRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEET 256
+ V++ +SWN M SG+ALN D GA +FKRMELEGL+PN VTWTSLLSSHARCG +ET
Sbjct: 193 MFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDET 252
Query: 257 MDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICV 316
++LF +MR RGIE+GAEA+AVVLSVCAD+A GK IHG+V+KGG+EDY+FVKNALI
Sbjct: 253 LELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGT 312
Query: 317 YGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGG--SMER 374
YGKH + A +F EI+ KN+VSWNALI+SYAE+GLCDEA F +EK D S+ R
Sbjct: 313 YGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVR 372
Query: 375 PNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREI 434
PNVISWSAVI FA GRGE++L+LFR+MQLAKV+AN VTIS +LSVCAE AALN+GRE+
Sbjct: 373 PNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGREL 432
Query: 435 HGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLG 494
HG+ +R M+ NILV NGL+NMYMKCG +EGHLVF+ IE +DLI+WNS+I GYGM+GLG
Sbjct: 433 HGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLG 492
Query: 495 ENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYAC 554
ENAL TF EMI A KPD + FVA+LSACSHAGLV GR +FD MV EFRIEP +EHYAC
Sbjct: 493 ENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYAC 552
Query: 555 MVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET 614
MVDLLGRAGLL+EA+DIV+NMP+EPN YVWG LLNSCRM+K+ D+ E ASQI L ++
Sbjct: 553 MVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKI 612
Query: 615 TGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDL 674
TGS+MLLSNIYAA+GRW+D+A+VR+SA+TKGLKK+ GQSWIEV++K++ FS+GN + L
Sbjct: 613 TGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGL 672
Query: 675 KNVCEVLEELALQMENKGCVPDN 697
+++ +LEEL L M ++ D+
Sbjct: 673 EDIYVILEELNLHMASENYKLDS 695
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630-like [Cucumis sativus] gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/670 (60%), Positives = 533/670 (79%), Gaps = 4/670 (0%)
Query: 21 FSIITYNNSLLDCFDHLLQQCKTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLF 80
FS ITY+ L D FDHLL+QC I KQVH+ +VTGA SAF++AR++SIY+R+G +
Sbjct: 28 FSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVS 87
Query: 81 DARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIR 140
DAR VF +APF+C S+ LLWNSI+R NV +G AL+LY KMR GVLGDGFTFPL++R
Sbjct: 88 DARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLR 147
Query: 141 ACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVK 200
A +G+F + + +H HV+Q GFQ ++H+ NELIGMYAK+ +M D+ K+FDK+R+K
Sbjct: 148 ASSNLGAF----NMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIK 203
Query: 201 NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLF 260
+ +SWN M SG+A N+D +GA +F +MELEG+EPN VTWTSLLSSHARCG LEETM LF
Sbjct: 204 SVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLF 263
Query: 261 DMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKH 320
MR +G+ AE +AVVLSVCADLA + G++IHG+++KGGF DY+F KNALI +YGK
Sbjct: 264 CKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKG 323
Query: 321 GDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380
G V A+ LF E++ KN+VSWNALI+S+AE+G+ D+A+E+ SQLEK++ +PNVI+W
Sbjct: 324 GGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITW 383
Query: 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVR 440
SA+I FAS G GEE+L++FRKMQLA V ANSVTI+ +LS+CA AALN+GRE+HGHV+R
Sbjct: 384 SAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIR 443
Query: 441 VSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALAT 500
M+ N+LV NGL+NMY KCG + G +VFE++E +D I+WNSMI+GYG +GLG++ALAT
Sbjct: 444 ARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALAT 503
Query: 501 FEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLG 560
F MI++G++PDGV F+A LSACSHAGLV EG +F M + F+IEP++EHYACMVDLLG
Sbjct: 504 FNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLG 563
Query: 561 RAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620
RAGL++EAS+I+K MPMEPNAY+W +LLNSCRMHK+TD+AE A++I L ++ TGS+ML
Sbjct: 564 RAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNLNSKITGSHML 623
Query: 621 LSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEV 680
LSNI+AAS RWED+A+VRISA+ KGLKKV G SWIEVK+K++MF +G ++ L+ V E+
Sbjct: 624 LSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFKAGYTISEGLEKVDEI 683
Query: 681 LEELALQMEN 690
L +LA Q+EN
Sbjct: 684 LHDLAFQIEN 693
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/579 (66%), Positives = 482/579 (83%), Gaps = 5/579 (0%)
Query: 122 KMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMY 181
+MRK+G LGDGFTFPLVIRAC +MGSF G+ +H HVL+MGFQ ++H+ NELIGMY
Sbjct: 32 RMRKIGTLGDGFTFPLVIRACAYMGSF----ILGKTIHGHVLEMGFQSHLHVGNELIGMY 87
Query: 182 AKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWT 241
AK+G+M D+ LFD++ V++YISWN M S +A N+DC+GALE+F+RME EG+EPN VTWT
Sbjct: 88 AKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWT 147
Query: 242 SLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKG 301
SL+SS+AR G EE M+LF +MR +G+EV EA+AVV+S+CADL A K+IH + +KG
Sbjct: 148 SLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKG 207
Query: 302 GFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVF 361
GFE+Y FVK+ALICVYGKHGDV A NLF E++ K++ SWNALITS+AEAGLCDEA+E+F
Sbjct: 208 GFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIF 267
Query: 362 SQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSV 421
SQLE+ RPNV+SWSA+I FAS GR +EAL+LFR+MQ AK++AN+VTIS +LS+
Sbjct: 268 SQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSL 327
Query: 422 CAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITW 481
CAE AAL++GREIHGHVVR M NILV NGL+NMY KCGCL+EGH++FE+ E+KDLI+W
Sbjct: 328 CAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISW 387
Query: 482 NSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVR 541
NSMI+GYGM+GLG NAL TF++MI+ GFKPDGV FVAVLS+CSH+GLV+EGRR+FD M++
Sbjct: 388 NSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLK 447
Query: 542 EFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAE 601
++RIEPQMEHYACMVDLLGRAGLL+EAS+IVKNMP+ PNA VWG LLNSCRMH NT++AE
Sbjct: 448 KYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAE 507
Query: 602 AMASQIFGLI-TETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRK 660
AS +F L ETTG+YMLLSNIYAASGRWED+A+VR SAKTKGLKK GQSWI+V++
Sbjct: 508 ETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKN 567
Query: 661 IHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDI 699
++ FS+GN++Q + + E+LEEL QME +G V D DI
Sbjct: 568 VYTFSAGNNMQRGFEQIFEILEELTFQMEREGTVHDTDI 606
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g17630 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana] gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/699 (53%), Positives = 500/699 (71%), Gaps = 13/699 (1%)
Query: 13 SPSNPS-RPFSIITYNN--SLLDCFDHLLQQCKTIHQLKQVHNQLIVTG-ANASAFLAAR 68
SP S + +T NN SL FDHLL C T Q +QVH Q++++ S LAA
Sbjct: 35 SPDTVSVSSYYSLTSNNDQSLFHYFDHLLGLCLTAQQCRQVHAQVLLSDFIFRSGSLAAN 94
Query: 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGV 128
++S+YAR G L DARNVFET S LWNSIL+ NVS+GLYENAL+LY MR+ G+
Sbjct: 95 LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRGL 154
Query: 129 LGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMS 188
GDG+ PL++RAC+++G RF + H V+Q+G + N+H+VNEL+ +Y K G+M
Sbjct: 155 TGDGYILPLILRACRYLG----RFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMG 210
Query: 189 DSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHA 248
D++ LF ++ V+N +SWN+M GF+ +DC+ A+++F+ M+ E +P+ VTWTS+LS H+
Sbjct: 211 DAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHS 270
Query: 249 RCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVF 308
+CG+ E+ + F +MR G V EA+AV SVCA+L A + + +HG+VIKGGFE+Y+
Sbjct: 271 QCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLP 330
Query: 309 VKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368
+NALI VYGK G VK A++LF +I K I SWN+LITS+ +AG DEA+ +FS+LE+++
Sbjct: 331 SRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMN 390
Query: 369 GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL 428
+ NV++W++VI GRG+++L+ FR+MQ +KV+ANSVTI +LS+CAE AL
Sbjct: 391 HVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPAL 450
Query: 429 NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGY 488
N+GREIHGHV+R SM++NILVQN L+NMY KCG L EG LVFE I KDLI+WNS+I GY
Sbjct: 451 NLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGY 510
Query: 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ 548
GM+G E AL+ F+ MI +GF PDG+A VAVLSACSHAGLV +GR IF M + F +EPQ
Sbjct: 511 GMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQ 570
Query: 549 MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF 608
EHYAC+VDLLGR G L+EAS+IVKNMPMEP V G LLNSCRMHKN D+AE +ASQ+
Sbjct: 571 QEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLS 630
Query: 609 GLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGN 668
L E TGSYMLLSNIY+A GRWE++A VR AK K LKKV+G SWIEVK+K + FSSG+
Sbjct: 631 VLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKYKFSSGS 690
Query: 669 SLQSDLKNVCEVLEELALQMENKGCVPD-----NDIILW 702
+QS+ + + VLE+L M KG D +D+ LW
Sbjct: 691 IVQSEFETIYPVLEDLVSHMLKKGPTHDGNNYEDDLDLW 729
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/683 (53%), Positives = 490/683 (71%), Gaps = 6/683 (0%)
Query: 18 SRPFSIITYNN-SLLDCFDHLLQQCKTIHQLKQVHNQLIVTGA-NASAFLAARVLSIYAR 75
S +S+ T N+ SL DHLL+ C T Q KQVH Q++V+ S LAA +S+Y+R
Sbjct: 42 SSYYSLTTNNDQSLFHNLDHLLRLCLTAQQCKQVHAQVLVSDYIYRSGSLAANFVSVYSR 101
Query: 76 FGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTF 135
G L DARNVFET S LWNSIL+ NVS+GLYENA +LY MR+ G+ GDGF
Sbjct: 102 LGLLLDARNVFETVSLVLWSDLRLWNSILKANVSHGLYENAFELYRGMRERGLTGDGFIL 161
Query: 136 PLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFD 195
PL++RAC+++G RF + H+ V+Q+G + N+H+ NEL+ +Y K ++ D++ LF
Sbjct: 162 PLILRACRYLG----RFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYNLFV 217
Query: 196 KVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEE 255
++ V+N +SWN+M GF+ FDC+ A+++F+ M+ E +P+ VTWTSLLS H++CG+ E+
Sbjct: 218 EMPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCGKFED 277
Query: 256 TMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALIC 315
+ F +MR V EA+AV SVCA+L A + +HGFVIKGGFE+ + +NALI
Sbjct: 278 VIKYFHVMRMSASAVSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEECLPSRNALIH 337
Query: 316 VYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERP 375
VYGK G VK A+ LF +I K I SWN+LITS+ +AG DEA+ +F++LE++D +
Sbjct: 338 VYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDVCNVKA 397
Query: 376 NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIH 435
NV++W++VI GRG+ +L+ FR+MQ +KV++NSVTI +LS+CAE ALN+GREIH
Sbjct: 398 NVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVTICCILSICAELPALNLGREIH 457
Query: 436 GHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGE 495
GHV+R SM+ NILVQN L+NMY KCG L EG LVFE I KDLI+WNS+I GYGM+G GE
Sbjct: 458 GHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGMHGFGE 517
Query: 496 NALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACM 555
AL+ F+ MI++G PDG+A VAVLSACSHAGLV +GR+IF M + F +EPQ EHYAC+
Sbjct: 518 KALSMFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQQEHYACI 577
Query: 556 VDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615
VDLLGR G L+EAS+IVKNMPMEP V G LLNSCRMHKN D+AE +ASQ+ L E T
Sbjct: 578 VDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNMDIAEIIASQLRVLEPERT 637
Query: 616 GSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLK 675
GSYMLLSNIY+A GRWE++AKVR AK K LKKV+G SWIE+K+KI+ FSSG+ +QS+
Sbjct: 638 GSYMLLSNIYSAGGRWEESAKVRALAKKKDLKKVSGSSWIELKKKIYKFSSGSIVQSEFA 697
Query: 676 NVCEVLEELALQMENKGCVPDND 698
++ VLE+L M +G D +
Sbjct: 698 SIYPVLEDLVSHMVKEGPTHDGN 720
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/626 (43%), Positives = 399/626 (63%), Gaps = 23/626 (3%)
Query: 85 VFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG-VLGDGFTFPLVIRACK 143
+ + P C ++ WN +LR ++ + AL LY +MR L L + +T PL +RA
Sbjct: 31 IRDLPPTTC---AVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAAT 87
Query: 144 FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKN-Y 202
+H H L +G + + +L+ YA+ G+ ++ +FD + K
Sbjct: 88 S--------PIASAIHAHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRAT 139
Query: 203 ISWNMMFSGFALNFDCDGALELFKRMELEGLE-PNFVTWTSLLSSHARCGRLEETMDLFD 261
+SWN + S +++ D + A+ F RM G P+ VTWT+LLS+HARCG+ ++LF
Sbjct: 140 MSWNTLISAYSVCCDPNNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFG 199
Query: 262 MMRKRGIEVGAEAIAVVLSVCA---DLAADHMGKVIHGF-VIKGGFEDYVFVKNALICVY 317
M + G E AE++AV LS C DLA G+ IHG+ V KG Y+FV N+L+C+Y
Sbjct: 200 DMHRSGCEGNAESVAVALSACPYAGDLALAK-GRAIHGYGVAKGVVRGYLFVTNSLVCMY 258
Query: 318 GKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV 377
GK G + A+ +F E E+N V+WNALITSYA AG+CDEA+ V ++E+ G M PNV
Sbjct: 259 GKLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQR--GGMVAPNV 316
Query: 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGH 437
+SWSAVIG FAS+G E AL+LFR+MQ + N VT++ +LS C E A+ +GRE+H
Sbjct: 317 MSWSAVIGGFASSGDNERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRLGREVHAD 376
Query: 438 VVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENA 497
+R ++++ LV NGL+NMY KCG + + VF+ ++ +DL++WNSM++GYGM+GL ++A
Sbjct: 377 AIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDA 436
Query: 498 LATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557
LA F +M EA PDGV FVAVLSACSHAG V+EGRR+FD M+ E +I P MEHY CMVD
Sbjct: 437 LAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVD 496
Query: 558 LLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617
LLGRAGLL+EAS+ ++ MPM + VWG LLNSCR+H + +AEA ++ TTG+
Sbjct: 497 LLGRAGLLKEASEFIETMPMGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGN 556
Query: 618 YMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQS--DLK 675
+ L++N+YAA G W+D+ +VR+ + GL+K GQSW+EVK K+ F +G+ S +
Sbjct: 557 HTLITNLYAACGMWDDSKRVRVMTREAGLRKNPGQSWVEVKNKVFAFMAGSVPPSMPRAE 616
Query: 676 NVCEVLEELALQMENKGCVPDNDIIL 701
+V VL++L +M+++ + D I+
Sbjct: 617 DVFRVLDDLYREMDDQRRAIEEDHIV 642
|
Source: Triticum aestivum Species: Triticum aestivum Genus: Triticum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414875841|tpg|DAA52972.1| TPA: hypothetical protein ZEAMMB73_038558 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/611 (44%), Positives = 400/611 (65%), Gaps = 18/611 (2%)
Query: 90 PFDCKS---SSLLWNSILRVNVSNGLYENALKLYVKMRKLG-VLGDGFTFPLVIRACKFM 145
P C S++ WN +LR +++ AL LY MR L L + +T PL +RA
Sbjct: 26 PIRCHPPTDSAVPWNKLLRDHIAGSRPGLALALYRLMRALSPALPNSYTLPLALRAAP-- 83
Query: 146 GSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVK-NYIS 204
S+R +VH H L +G + + +++ YA++G+ +++ +FD + ++ + +S
Sbjct: 84 -SWRL----AAVVHGHALHLGLHTHPDVAGQVLAAYARLGRAAEARCVFDALPLRRSTLS 138
Query: 205 WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMR 264
WN + S ++ D D A F RM G P+ VTWT+LLS+HARCGR E + L M
Sbjct: 139 WNTLISAYSAGCDPDAAWVAFARMVAAGARPDAVTWTALLSAHARCGRHPEALRLLGAMH 198
Query: 265 KRGIEVGAEAIAVVLSVC--ADLAADHMGKVIHGF-VIKGGFEDYVFVKNALICVYGKHG 321
+ G E AEA+AV LS C A A G+ IH + +KG Y+FV N+L+C+YGK G
Sbjct: 199 RSGCEGNAEAVAVALSACPYAGGPALGRGRSIHAYGFVKGVVHGYLFVTNSLVCMYGKLG 258
Query: 322 DVKVAQNLFSEI-EEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380
+++ A+ +F + +KN V+WNALITSYA AGLC +A+ V +Q+E+ G M PNV+SW
Sbjct: 259 EMEEAEKVFWDAGAKKNAVTWNALITSYAAAGLCGKALGVLAQMEQC--GGMVAPNVVSW 316
Query: 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVR 440
SAVIG FAS+G E+AL L R+MQ ++ N+VT++ +LS C + AL +G+E+HGH ++
Sbjct: 317 SAVIGGFASSGDMEQALQLCRQMQQQWLLPNAVTLATVLSACTQLLALRLGQEVHGHTIK 376
Query: 441 VSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALAT 500
+++++ LVQNGL+N Y KCG + VF+ ++ +DLI+WNSMI YG +G+ + ALA
Sbjct: 377 AALDRHSLVQNGLVNTYGKCGKVATARKVFDGMKSRDLISWNSMIGSYGAHGMCDEALAM 436
Query: 501 FEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLG 560
F+++ A +PDGV FVAVLSACSH G V EGRR+FD MVRE +I P MEHY CMVDLLG
Sbjct: 437 FQDLTRALIEPDGVTFVAVLSACSHTGRVAEGRRLFDQMVREHKISPTMEHYTCMVDLLG 496
Query: 561 RAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620
RAGLL+ A +++ MPM+P+ VWG LLNSCR+H + +AEA +++ T TTG+ L
Sbjct: 497 RAGLLRGACELIDTMPMKPDLCVWGALLNSCRIHGDAALAEAAMAKVLQAETATTGNRTL 556
Query: 621 LSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEV 680
++N+YAA G W+D+ +VR++ K GL+K GQSWIEV+ K+ F++ ++ S+ + V V
Sbjct: 557 ITNLYAACGMWDDSKRVRMTMKEAGLRKNPGQSWIEVRNKVFAFTAWSAPPSEAEEVFRV 616
Query: 681 LEELALQMENK 691
L++L +M+++
Sbjct: 617 LDDLYGEMKDE 627
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 881 | ||||||
| TAIR|locus:2007888 | 731 | AT1G17630 [Arabidopsis thalian | 0.778 | 0.938 | 0.533 | 3.4e-196 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.738 | 0.856 | 0.335 | 2.1e-107 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.700 | 0.781 | 0.318 | 6e-99 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.723 | 0.810 | 0.343 | 1.7e-98 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.614 | 0.692 | 0.362 | 6.8e-98 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.707 | 0.893 | 0.312 | 3.4e-93 | |
| TAIR|locus:2159582 | 849 | SLG1 "AT5G08490" [Arabidopsis | 0.534 | 0.554 | 0.317 | 3.8e-93 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.399 | 0.395 | 0.370 | 1.1e-86 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.409 | 0.438 | 0.370 | 1.3e-86 | |
| TAIR|locus:2047017 | 597 | AT2G21090 "AT2G21090" [Arabido | 0.592 | 0.874 | 0.345 | 2.6e-86 |
| TAIR|locus:2007888 AT1G17630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1900 (673.9 bits), Expect = 3.4e-196, P = 3.4e-196
Identities = 373/699 (53%), Positives = 497/699 (71%)
Query: 13 SPSNPS-RPFSIITYNN--SLLDCFDHLLQQCKTIHQLKQVHNQLIVTG-ANASAFLAAR 68
SP S + +T NN SL FDHLL C T Q +QVH Q++++ S LAA
Sbjct: 35 SPDTVSVSSYYSLTSNNDQSLFHYFDHLLGLCLTAQQCRQVHAQVLLSDFIFRSGSLAAN 94
Query: 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGV 128
++S+YAR G L DARNVFET S LWNSIL+ NVS+GLYENAL+LY MR+ G+
Sbjct: 95 LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRGL 154
Query: 129 LGDGFTFPLVIRACKFMXXXXXXXXXXQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMS 188
GDG+ PL++RAC+++ + H V+Q+G + N+H+VNEL+ +Y K G+M
Sbjct: 155 TGDGYILPLILRACRYLGRFGLC----RAFHTQVIQIGLKENLHVVNELLTLYPKAGRMG 210
Query: 189 DSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHA 248
D++ LF ++ V+N +SWN+M GF+ +DC+ A+++F+ M+ E +P+ VTWTS+LS H+
Sbjct: 211 DAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHS 270
Query: 249 RCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVF 308
+CG+ E+ + F +MR G V EA+AV SVCA+L A + + +HG+VIKGGFE+Y+
Sbjct: 271 QCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLP 330
Query: 309 VKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368
+NALI VYGK G VK A++LF +I K I SWN+LITS+ +AG DEA+ +FS+LE+++
Sbjct: 331 SRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMN 390
Query: 369 GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL 428
+ NV++W++VI GRG+++L+ FR+MQ +KV+ANSVTI +LS+CAE AL
Sbjct: 391 HVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPAL 450
Query: 429 NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGY 488
N+GREIHGHV+R SM++NILVQN L+NMY KCG L EG LVFE I KDLI+WNS+I GY
Sbjct: 451 NLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGY 510
Query: 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ 548
GM+G E AL+ F+ MI +GF PDG+A VAVLSACSHAGLV +GR IF M + F +EPQ
Sbjct: 511 GMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQ 570
Query: 549 MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF 608
EHYAC+VDLLGR G L+EAS+IVKNMPMEP V G LLNSCRMHKN D+AE +ASQ+
Sbjct: 571 QEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLS 630
Query: 609 GLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGN 668
L E TGSYMLLSNIY+A GRWE++A VR AK K LKKV+G SWIEVK+K + FSSG+
Sbjct: 631 VLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKYKFSSGS 690
Query: 669 SLQSDLKNVCEVLEELALQMENKGCVPD-----NDIILW 702
+QS+ + + VLE+L M KG D +D+ LW
Sbjct: 691 IVQSEFETIYPVLEDLVSHMLKKGPTHDGNNYEDDLDLW 729
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 222/662 (33%), Positives = 371/662 (56%)
Query: 43 TIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNS 102
++ + Q H +++ +GA +++A++++ Y+ + DA V ++ P D S ++S
Sbjct: 30 SLSKTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIP-DPTIYS--FSS 86
Query: 103 ILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMXXXXXXXXXXQIVHNHV 162
++ L+ ++ ++ +M G++ D P + + C + +H
Sbjct: 87 LIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQ----IHCVS 142
Query: 163 LQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGAL 222
G + + + MY + G+M D+ K+FD++ K+ ++ + + +A + +
Sbjct: 143 CVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVV 202
Query: 223 ELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVC 282
+ ME G+E N V+W +LS R G +E + +F + G ++ VL
Sbjct: 203 RILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSV 262
Query: 283 ADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWN 342
D +MG++IHG+VIK G V +A+I +YGK G V +LF++ E N
Sbjct: 263 GDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCN 322
Query: 343 ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRK 402
A IT + GL D+A+E+F ++ +ME NV+SW+++I A NG+ EAL+LFR+
Sbjct: 323 AYITGLSRNGLVDKALEMFELFKEQ---TMEL-NVVSWTSIIAGCAQNGKDIEALELFRE 378
Query: 403 MQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGC 462
MQ+A V N VTI +L C AAL GR HG VRV + N+ V + L++MY KCG
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGR 438
Query: 463 LEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA 522
+ +VF + K+L+ WNS+++G+ M+G + ++ FE ++ KPD ++F ++LSA
Sbjct: 439 INLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498
Query: 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAY 582
C GL +EG + F MM E+ I+P++EHY+CMV+LLGRAG LQEA D++K MP EP++
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558
Query: 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642
VWG LLNSCR+ N D+AE A ++F L E G+Y+LLSNIYAA G W + +R +
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618
Query: 643 TKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILW 702
+ GLKK G SWI+VK +++ +G+ + + E ++E++ +M G P+ D L
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALH 678
Query: 703 EM 704
++
Sbjct: 679 DV 680
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 945 (337.7 bits), Expect = 6.0e-99, Sum P(2) = 6.0e-99
Identities = 205/643 (31%), Positives = 348/643 (54%)
Query: 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGV 128
++S Y G + AR VFE AP C ++++N+++ N +A+ L+ KM+ G
Sbjct: 86 MVSGYCASGDITLARGVFEKAPV-CMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGF 144
Query: 129 LGDGFTFPLVIRACKFMXXXXXXXXXXQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQ-- 186
D FTF V+ + H L+ G + N L+ +Y+K
Sbjct: 145 KPDNFTFASVLAGLALVADDEKQCVQF---HAAALKSGAGYITSVSNALVSVYSKCASSP 201
Query: 187 --MSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNF--VTWTS 242
+ + K+FD++ K+ SW M +G+ N G +L + + LEG++ N V + +
Sbjct: 202 SLLHSARKVFDEILEKDERSWTTMMTGYVKN----GYFDLGEEL-LEGMDDNMKLVAYNA 256
Query: 243 LLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGG 302
++S + G +E +++ M GIE+ V+ CA +GK +H +V++
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR- 315
Query: 303 FEDYVF-VKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVF 361
ED+ F N+L+ +Y K G A+ +F ++ K++VSWNAL++ Y +G EA +F
Sbjct: 316 -EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIF 374
Query: 362 SQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSV 421
+ M+ N++SW +I A NG GEE L LF M+ SG +
Sbjct: 375 KE--------MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426
Query: 422 CAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITW 481
CA A G++ H ++++ + ++ N L+ MY KCG +EE VF + D ++W
Sbjct: 427 CAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSW 486
Query: 482 NSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVR 541
N++I+ G +G G A+ +EEM++ G +PD + + VL+ACSHAGLV++GR+ FD M
Sbjct: 487 NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMET 546
Query: 542 EFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAE 601
+RI P +HYA ++DLL R+G +A +++++P +P A +W LL+ CR+H N ++
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGI 606
Query: 602 AMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKI 661
A ++FGLI E G+YMLLSN++AA+G+WE+ A+VR + +G+KK SWIE++ ++
Sbjct: 607 IAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQV 666
Query: 662 HMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEM 704
H F ++ + + V L++L +M G VPD +L ++
Sbjct: 667 HTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDV 709
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 229/667 (34%), Positives = 369/667 (55%)
Query: 62 SAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSN-GLYENALKLY 120
+AF VLS Y++ G + F+ P + S+ W +++ V N G Y A+++
Sbjct: 79 TAFSWNTVLSAYSKRGDMDSTCEFFDQLP---QRDSVSWTTMI-VGYKNIGQYHKAIRVM 134
Query: 121 VKMRKLGVLGDGFTFPLVIRACKFMXXXXXXXXXXQIVHNHVLQMGFQGNVHIVNELIGM 180
M K G+ FT V+ + + VH+ ++++G +GNV + N L+ M
Sbjct: 135 GDMVKEGIEPTQFTLTNVLASV----AATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNM 190
Query: 181 YAKMGQ-MSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT 239
YAK G M F +FD++ V++ SWN M + D A+ F++M E + VT
Sbjct: 191 YAKCGDPMMAKF-VFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA----ERDIVT 245
Query: 240 WTSLLSSHARCGRLEETMDLFD-MMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFV 298
W S++S + G +D+F M+R + +A VLS CA+L +GK IH +
Sbjct: 246 WNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHI 305
Query: 299 IKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKN--IVSWNALITSYAEAGLCDE 356
+ GF+ V NALI +Y + G V+ A+ L + K+ I + AL+ Y + G ++
Sbjct: 306 VTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQ 365
Query: 357 AVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTIS 416
A +F L+ D V++W+A+I + +G EA++LFR M NS T++
Sbjct: 366 AKNIFVSLKDRD--------VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLA 417
Query: 417 GLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE-K 475
+LSV + A+L+ G++IHG V+ ++ V N L+ MY K G + F+ I +
Sbjct: 418 AMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCE 477
Query: 476 KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRI 535
+D ++W SMI +G E AL FE M+ G +PD + +V V SAC+HAGLVN+GR+
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQY 537
Query: 536 FDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHK 595
FDMM +I P + HYACMVDL GRAGLLQEA + ++ MP+EP+ WG+LL++CR+HK
Sbjct: 538 FDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK 597
Query: 596 NTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWI 655
N D+ + A ++ L E +G+Y L+N+Y+A G+WE+AAK+R S K +KK G SWI
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 656 EVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVK-RIQ 714
EVK K+H+F + + + ++++ +++ G VPD +L ++ ++ VK +I
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDL--EEEVKEQIL 715
Query: 715 RIRADNI 721
R ++ +
Sbjct: 716 RHHSEKL 722
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
Identities = 209/577 (36%), Positives = 326/577 (56%)
Query: 175 NELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLE 234
N ++ YA+ G + D+ +FD++ KN +SWN + S + N + A LFK E L
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL- 219
Query: 235 PNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIA-VVLSVCADLAADHMGK- 292
V+W LL + ++ E FD M R + I S D A +
Sbjct: 220 ---VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276
Query: 293 ----------VIHGFVIKGGFEDY--VFVK---------NALICVYGKHGDVKVAQNLFS 331
++ G++ E+ +F K NA++ Y + +++A+ LF
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFD 336
Query: 332 EIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNG 391
+ +N+ +WN +IT YA+ G EA +F ++ K D P +SW+A+I ++ +G
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRD------P--VSWAAMIAGYSQSG 388
Query: 392 RGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN 451
EAL LF +M+ N + S LS CA+ AL +G+++HG +V+ V N
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 448
Query: 452 GLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKP 511
LL MY KCG +EE + +F+++ KD+++WN+MI+GY +G GE AL FE M G KP
Sbjct: 449 ALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKP 508
Query: 512 DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDI 571
D VAVLSACSH GLV++GR+ F M +++ + P +HYACMVDLLGRAGLL++A ++
Sbjct: 509 DDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNL 568
Query: 572 VKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRW 631
+KNMP EP+A +WGTLL + R+H NT++AE A +IF + E +G Y+LLSN+YA+SGRW
Sbjct: 569 MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRW 628
Query: 632 EDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENK 691
D K+R+ + KG+KKV G SWIE++ K H FS G+ + + LEEL L+M+
Sbjct: 629 GDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKA 688
Query: 692 GCVPDNDIILWEMMGKKNVKRIQRIRADNIKSKHRIV 728
G V ++L ++ ++ +R+ R ++ + + I+
Sbjct: 689 GYVSKTSVVLHDVEEEEK-ERMVRYHSERLAVAYGIM 724
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 203/649 (31%), Positives = 349/649 (53%)
Query: 47 LKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRV 106
++ VH +I +G + F+ R++ Y++ G L D R VF+ P + + WNS++
Sbjct: 39 VRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMP---QRNIYTWNSVVTG 95
Query: 107 NVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMXXXXXXXXXXQIVHNHVLQMG 166
G + A L+ M + D T+ ++ ++H G
Sbjct: 96 LTKLGFLDEADSLFRSMPER----DQCTWNSMVSGFAQHDRCEEALCYFAMMHKE----G 147
Query: 167 FQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFK 226
F N + ++ + + M+ ++ + ++S + S + G + +
Sbjct: 148 FVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQ 207
Query: 227 RMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLA 286
R+ E + N V+W SL++ + G E +D+F MM + +E +A V+S CA L+
Sbjct: 208 RVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLS 267
Query: 287 ADHMGKVIHGFVIKGG-FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALI 345
A +G+ +HG V+K + + + NA + +Y K +K A+ +F + +N+++ ++I
Sbjct: 268 AIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMI 327
Query: 346 TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL 405
+ YA A A +F+++ ER NV+SW+A+I + NG EEAL LF ++
Sbjct: 328 SGYAMAASTKAARLMFTKMA-------ER-NVVSWNALIAGYTQNGENEEALSLFCLLKR 379
Query: 406 AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMN------KNILVQNGLLNMYMK 459
V + + +L CA+ A L++G + H HV++ +I V N L++MY+K
Sbjct: 380 ESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Query: 460 CGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAV 519
CGC+EEG+LVF ++ ++D ++WN+MI G+ NG G AL F EM+E+G KPD + + V
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGV 499
Query: 520 LSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEP 579
LSAC HAG V EGR F M R+F + P +HY CMVDLLGRAG L+EA +++ MPM+P
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQP 559
Query: 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639
++ +WG+LL +C++H+N + + +A ++ + +G Y+LLSN+YA G+WED VR
Sbjct: 560 DSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRK 619
Query: 640 SAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQM 688
S + +G+ K G SWI+++ H+F + K + +L+ L +M
Sbjct: 620 SMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEM 668
|
|
| TAIR|locus:2159582 SLG1 "AT5G08490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 155/488 (31%), Positives = 279/488 (57%)
Query: 206 NMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK 265
N + S +A D A F M + + ++W ++L + A + + ++L +
Sbjct: 370 NALISFYARFGDTSAAYWAFSLMSTKDI----ISWNAILDAFADSPKQFQFLNLLHHLLN 425
Query: 266 RGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGF---EDYVFVKNALICVYGKHGD 322
I + + I +L C ++ K +HG+ +K G E+ + NAL+ Y K G+
Sbjct: 426 EAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGN 485
Query: 323 VKVAQNLFSEIEEKN-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWS 381
V+ A +F + E+ +VS+N+L++ Y +G D+A +F+++ D + +WS
Sbjct: 486 VEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTD--------LTTWS 537
Query: 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRV 441
++ +A + EA+ +FR++Q + N+VTI LL VCA+ A+L++ R+ HG+++R
Sbjct: 538 LMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRG 597
Query: 442 SMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATF 501
+ +I ++ LL++Y KCG L+ + VF+ ++DL+ + +M++GY ++G G+ AL +
Sbjct: 598 GLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIY 656
Query: 502 EEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR 561
M E+ KPD V +L+AC HAGL+ +G +I+D + ++P ME YAC VDL+ R
Sbjct: 657 SHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIAR 716
Query: 562 AGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLL 621
G L +A V MP+EPNA +WGTLL +C + D+ ++A+ + ++ TG+++L+
Sbjct: 717 GGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLI 776
Query: 622 SNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVL 681
SN+YAA +WE ++R K K +KK AG SW+EV + ++F SG+ ++ +++
Sbjct: 777 SNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLV 836
Query: 682 EELALQME 689
L LQM+
Sbjct: 837 NALYLQMK 844
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 1.1e-86, Sum P(3) = 1.1e-86
Identities = 138/372 (37%), Positives = 222/372 (59%)
Query: 342 NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFR 401
N L+ Y+ G D A+ +F G ME ++++W+ +I + + E+AL L
Sbjct: 444 NTLMDMYSRLGKIDIAMRIF--------GKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495
Query: 402 KMQ-LAKVVA----------NSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQ 450
KMQ L + V+ NS+T+ +L CA +AL G+EIH + ++ ++ ++ V
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555
Query: 451 NGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFK 510
+ L++MY KCGCL+ VF+QI +K++ITWN +I YGM+G G+ A+ M+ G K
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615
Query: 511 PDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASD 570
P+ V F++V +ACSH+G+V+EG RIF +M ++ +EP +HYAC+VDLLGRAG ++EA
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675
Query: 571 IVKNMPMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629
++ MP + N A W +LL + R+H N ++ E A + L Y+LL+NIY+++G
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAG 735
Query: 630 RWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQME 689
W+ A +VR + K +G++K G SWIE ++H F +G+S + + LE L +M
Sbjct: 736 LWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795
Query: 690 NKGCVPDNDIIL 701
+G VPD +L
Sbjct: 796 KEGYVPDTSCVL 807
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 137/370 (37%), Positives = 228/370 (61%)
Query: 336 KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEE 395
++I NA++ YA+ GL D A VF+ L D VISW+ +I +A NG E
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD--------VISWNTIISGYAQNGFASE 433
Query: 396 ALDLFRKMQL-AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLL 454
A++++ M+ ++ AN T +L C+++ AL G ++HG +++ + ++ V L
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493
Query: 455 NMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV 514
+MY KCG LE+ +F QI + + + WN++I+ +G +G GE A+ F+EM++ G KPD +
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553
Query: 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKN 574
FV +LSACSH+GLV+EG+ F+MM ++ I P ++HY CMVD+ GRAG L+ A +K+
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 575 MPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDA 634
M ++P+A +WG LL++CR+H N D+ + + +F + E G ++LLSN+YA++G+WE
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 635 AKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCV 694
++R A KGL+K G S +EV K+ +F +GN + + L L +++ G V
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733
Query: 695 PDNDIILWEM 704
PD+ +L ++
Sbjct: 734 PDHRFVLQDV 743
|
|
| TAIR|locus:2047017 AT2G21090 "AT2G21090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 186/538 (34%), Positives = 294/538 (54%)
Query: 158 VHNHVLQMGFQG-NVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNF 216
+H H+ GF+ N + N LIGMY K G+ D+ K+FD++ ++N SWN M SG+ +
Sbjct: 68 IHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSG 127
Query: 217 DCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIA 276
A +F M E + V+W +++ +A+ G L E + + R+ GI+ + A
Sbjct: 128 MLVRARVVFDSMP----ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFA 183
Query: 277 VVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEK 336
+L+ C + + HG V+ GF V + ++I Y K G ++ A+ F E+ K
Sbjct: 184 GLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK 243
Query: 337 NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396
+I W LI+ YA+ G + A ++F + M N +SW+A+I + G G A
Sbjct: 244 DIHIWTTLISGYAKLGDMEAAEKLFCE--------MPEKNPVSWTALIAGYVRQGSGNRA 295
Query: 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNM 456
LDLFRKM V T S L A A+L G+EIHG+++R ++ N +V + L++M
Sbjct: 296 LDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDM 355
Query: 457 YMKCGCLEEGHLVFEQIEKK-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVA 515
Y K G LE VF + K D + WN+MIS +GLG AL ++MI+ +P+
Sbjct: 356 YSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTT 415
Query: 516 FVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575
V +L+ACSH+GLV EG R F+ M + I P EHYAC++DLLGRAG +E ++ M
Sbjct: 416 LVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEM 475
Query: 576 PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAA 635
P EP+ ++W +L CR+H N ++ + A ++ L E++ Y+LLS+IYA G+WE
Sbjct: 476 PFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVE 535
Query: 636 KVRISAKTKGLKKVAGQSWIEVKRKIHMF--SSGNSLQSDLKNVCEVLEELALQMENK 691
K+R K + + K SWIE+++K+ F S G+ + + + +L LA +E +
Sbjct: 536 KLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEE 593
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LNP2 | PPR47_ARATH | No assigned EC number | 0.5379 | 0.7786 | 0.9384 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 881 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-134 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-101 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-69 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-55 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-40 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 422 bits (1086), Expect = e-134
Identities = 219/664 (32%), Positives = 336/664 (50%), Gaps = 88/664 (13%)
Query: 34 FDHLLQQCKTIHQL---KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAP 90
F +L+ C I L ++VH ++ G + ++++Y + G + AR VF+ P
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 91 F-DCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFR 149
DC S WN+++ NG L+L+ MR+L V D T VI AC+ +G R
Sbjct: 250 RRDCIS----WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 150 FRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMF 209
G+ +H +V++ GF +V + N LI MY +G ++ K+F ++ K+ +SW M
Sbjct: 306 L----GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361
Query: 210 SGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIE 269
SG+ N D ALE + ME + + P+ +T
Sbjct: 362 SGYEKNGLPDKALETYALMEQDNVSPDEIT------------------------------ 391
Query: 270 VGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNL 329
IA VLS CA L +G +H + G YV V NALI +Y K
Sbjct: 392 -----IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK---------- 436
Query: 330 FSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389
K I D+A+EVF + +VISW+++I
Sbjct: 437 -----CKCI----------------DKALEVFHN--------IPEKDVISWTSIIAGLRL 467
Query: 390 NGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILV 449
N R EAL FR+M L + NSVT+ LS CA AL G+EIH HV+R + + +
Sbjct: 468 NNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526
Query: 450 QNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGF 509
N LL++Y++CG + F +KD+++WN +++GY +G G A+ F M+E+G
Sbjct: 527 PNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 510 KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEAS 569
PD V F+++L ACS +G+V +G F M ++ I P ++HYAC+VDLLGRAG L EA
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645
Query: 570 DIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629
+ + MP+ P+ VWG LLN+CR+H++ ++ E A IF L + G Y+LL N+YA +G
Sbjct: 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705
Query: 630 RWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQME 689
+W++ A+VR + + GL G SW+EVK K+H F + + +K + VLE +M+
Sbjct: 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765
Query: 690 NKGC 693
G
Sbjct: 766 ASGL 769
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 331 bits (849), Expect = e-101
Identities = 182/613 (29%), Positives = 303/613 (49%), Gaps = 88/613 (14%)
Query: 94 KSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPL-----VIRACKFMGSF 148
KS L + I ++ V+ G + AL+L+ + G FT P ++ AC + S
Sbjct: 85 KSGVSLCSQIEKL-VACGRHREALELFEILE----AGCPFTLPASTYDALVEACIALKSI 139
Query: 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMM 208
R + V+ HV GF+ + +++N ++ M+ K G + D+ +LFD++ +N SW +
Sbjct: 140 RC----VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 209 FSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGI 268
G ++ G E LF M + G
Sbjct: 196 IGGL-VDA----------------------------------GNYREAFALFREMWEDGS 220
Query: 269 EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328
+ V+L A L + G+ +H V+K G FV ALI +Y K GD++ A+
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 329 LFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388
+F + EK V+WN+++ YA
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYA--------------------------------------- 301
Query: 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNIL 448
+G EEAL L+ +M+ + V + T S ++ + + A L ++ H ++R +I+
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAG 508
L+++Y K G +E+ VF+++ +K+LI+WN++I+GYG +G G A+ FE MI G
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 509 FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEA 568
P+ V F+AVLSAC ++GL +G IF M RI+P+ HYACM++LLGR GLL EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 569 SDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628
+++ P +P +W LL +CR+HKN ++ A +++G+ E +Y++L N+Y +S
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 629 GRWEDAAKVRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQM 688
GR +AAKV + K KGL +WIEVK++ H F SG+ L + + + L+EL ++
Sbjct: 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601
Query: 689 ENKGCVPDNDIIL 701
G V + + +L
Sbjct: 602 SEYGYVAEENELL 614
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 1e-69
Identities = 148/507 (29%), Positives = 238/507 (46%), Gaps = 85/507 (16%)
Query: 32 DCFDHLLQQC---KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFET 88
D + L + C + + + +V ++ + + + L +LS++ RFG L A VF
Sbjct: 87 DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGK 146
Query: 89 APFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSF 148
P + WN ++ G ++ AL LY +M GV D +TFP V+R C +
Sbjct: 147 MP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
Query: 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMM 208
G+ VH HV++ GF+ +V +VN LI MY K G + + +FD++ ++ ISWN M
Sbjct: 204 A----RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259
Query: 209 FSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGI 268
SG+ N +C LELF M ++P+ +T TS
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITS-------------------------- 293
Query: 269 EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328
V+S C L + +G+ +HG+V+K GF DV V
Sbjct: 294 ---------VISACELLGDERLGREMHGYVVKTGFA----------------VDVSVC-- 326
Query: 329 LFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388
N+LI Y G EA +VFS+ ME + +SW+A+I +
Sbjct: 327 -------------NSLIQMYLSLGSWGEAEKVFSR--------METKDAVSWTAMISGYE 365
Query: 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNIL 448
NG ++AL+ + M+ V + +TI+ +LS CA L++G ++H R + ++
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAG 508
V N L+ MY KC C+++ VF I +KD+I+W S+I+G +N AL F +M+
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LT 484
Query: 509 FKPDGVAFVAVLSACSHAGLVNEGRRI 535
KP+ V +A LSAC+ G + G+ I
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 4e-55
Identities = 137/504 (27%), Positives = 229/504 (45%), Gaps = 88/504 (17%)
Query: 95 SSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSF 154
SS+ NS LR S+G E ALKL M++L V D + + R C++ +
Sbjct: 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEW----KRAVEE 104
Query: 155 GQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFAL 214
G V + L V + N ++ M+ + G++ ++ +F K+ ++ SWN++ G+A
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 215 NFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEA 274
D AL L+ RM G+ P+ T+ +L + CG GI
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT---CG---------------GI------ 200
Query: 275 IAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIE 334
DLA G+ +H V++ GFE V V NALI +Y K GDV A+ +F +
Sbjct: 201 --------PDLA---RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 335 EKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGE 394
++ +SWNA+I+ Y E NG
Sbjct: 250 RRDCISWNAMISGYFE---------------------------------------NGECL 270
Query: 395 EALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLL 454
E L+LF M+ V + +TI+ ++S C +GRE+HG+VV+ ++ V N L+
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 455 NMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV 514
MY+ G E VF ++E KD ++W +MISGY NGL + AL T+ M + PD +
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYAC----MVDLLGRAGLLQEASD 570
+VLSAC+ G ++ G + + E + Y ++++ + + +A +
Sbjct: 391 TIASVLSACACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 571 IVKNMPMEPNAYVWGTLLNSCRMH 594
+ N+P E + W +++ R++
Sbjct: 446 VFHNIP-EKDVISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 1e-40
Identities = 136/549 (24%), Positives = 229/549 (41%), Gaps = 127/549 (23%)
Query: 34 FDHLLQQC---KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAP 90
+D L++ C K+I +K V+ + +G ++ RVL ++ + G L DAR +F+ P
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 91 FDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDG--FTFPLVIRACKFMGSF 148
+ + W +I+ V G Y A L+ +M D TF +++RA +GS
Sbjct: 186 ---ERNLASWGTIIGGLVDAGNYREAFALFREM--WEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMM 208
R GQ +H VL+ G G+ + LI MY+K G + D+ +FD + K ++WN M
Sbjct: 241 RA----GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296
Query: 209 FSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGI 268
+G+AL+ G EE + L+ MR G+
Sbjct: 297 LAGYALH-----------------------------------GYSEEALCLYYEMRDSGV 321
Query: 269 EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328
+ ++++ + + LA K H +I+ GF + AL+ +Y K G ++ A+N
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 329 LFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388
+F + KN++SWNALI Y
Sbjct: 382 VFDRMPRKNLISWNALIAGY---------------------------------------G 402
Query: 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNIL 448
++GRG +A+++F +M V N VT +LS C S G EI SM++N
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF-----QSMSEN-- 455
Query: 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMI-EA 507
+ + M C MI G GL + A A MI A
Sbjct: 456 --HRIKPRAMHYAC---------------------MIELLGREGLLDEAYA----MIRRA 488
Query: 508 GFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQ 566
FKP + A+L+AC + GR + + + + P+ + +Y +++L +G
Sbjct: 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSSGRQA 545
Query: 567 EASDIVKNM 575
EA+ +V+ +
Sbjct: 546 EAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-30
Identities = 88/324 (27%), Positives = 165/324 (50%), Gaps = 16/324 (4%)
Query: 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVN 107
+Q+H ++ TG F++ ++ +Y++ G + DAR VF+ P + +++ WNS+L
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGY 300
Query: 108 VSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGF 167
+G E AL LY +MR GV D FTF ++IR + + H +++ GF
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH----AKQAHAGLIRTGF 356
Query: 168 QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKR 227
++ L+ +Y+K G+M D+ +FD++ KN ISWN + +G+ + A+E+F+R
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 228 MELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMM-RKRGIEVGAEAIAVVLSVCADLA 286
M EG+ PN VT+ ++LS+ G E+ ++F M I+ A A ++ + L
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL---LG 473
Query: 287 ADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVK----VAQNLFSEIEEKNIVSWN 342
+ + + + + F+ V + AL+ H +++ A+ L+ EK + ++
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYV 532
Query: 343 ALITSYAEAGLCDEAVEVFSQLEK 366
L+ Y +G EA +V L++
Sbjct: 533 VLLNLYNSSGRQAEAAKVVETLKR 556
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 9e-15
Identities = 84/389 (21%), Positives = 166/389 (42%), Gaps = 21/389 (5%)
Query: 183 KMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTS 242
K + ++F+ +R ++NM+ S A + D DGAL + + ++ GL+ + +T+
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477
Query: 243 LLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVI--HGFVIK 300
L+S+ A+ G+++ ++F M G+E ++ CA A + K +G +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA--RAGQVAKAFGAYGIMRS 535
Query: 301 GGFEDYVFVKNALICVYGKHGDVKVAQNLFSEI--EEKNI----VSWNALITSYAEAGLC 354
+ V NALI G+ G V A ++ +E+ E I ++ AL+ + A AG
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 355 DEAVEVFSQLEKLD-GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV 413
D A EV+ + + + G+ E ++ + + + G + AL ++ M+ V + V
Sbjct: 596 DRAKEVYQMIHEYNIKGTPE-----VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 414 TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQI 473
S L+ V + L+ EI + + + + L+ ++ ++E I
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 474 EKKDLI----TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLV 529
+ L T N++I+ AL EM G P+ + + +L A
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 530 NEGRRIFDMMVREFRIEPQMEHYACMVDL 558
+ G + +E I+P + C+ L
Sbjct: 771 DVGLDLL-SQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 98/435 (22%), Positives = 192/435 (44%), Gaps = 52/435 (11%)
Query: 100 WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVH 159
+N ++ V S+ + AL++ +++ G+ D + +I C G F ++ H
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF---EVFH 496
Query: 160 NHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY----ISWNMMFSGFALN 215
V G + NVH LI A+ GQ++ +F + +R KN + +N + S +
Sbjct: 497 EMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 216 FDCDGALELFKRMELEG--LEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAE 273
D A ++ M+ E ++P+ +T +L+ + A G+++ +++ M+ + I+ E
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 274 AIAVVLSVCA---DLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLF 330
+ ++ C+ D D + KG D VF +AL+ V G GD+ A +
Sbjct: 616 VYTIAVNSCSQKGDW--DFALSIYDDMKKKGVKPDEVFF-SALVDVAGHAGDLDKAFEIL 672
Query: 331 SEIEEKNI----VSWNALITSYAEAGLCDEAVEVFSQLE--KLDGGSMERPNVISWSAVI 384
+ ++ I VS+++L+ + + A +A+E++ ++ KL RP V + +A+I
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL------RPTVSTMNALI 726
Query: 385 GAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMN 444
A + +AL++ +M+ + N++T S LL ++G ++ +
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786
Query: 445 KNILVQNGL----LNMYMKCGCLEEGHLVFE----QIEKKDLITWNSMISGYGMNGLGEN 496
N+++ + L + K L E + F+ QIE K W S
Sbjct: 787 PNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK----WTSW------------ 830
Query: 497 ALATFEEMIEAGFKP 511
AL + E I AG P
Sbjct: 831 ALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 476 KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525
D++T+N++I GY G E AL F EM + G KP+ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 6e-08
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 375 PNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCA 423
P+V++++ +I + G+ EEAL LF +M+ + N T S L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 37/256 (14%)
Query: 344 LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKM 403
LI++ A++G D EVF ++ + NV ++ A+I A G+ +A + M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVN----AGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 404 QLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCL 463
+ V + V + L+S C +S A V ++L + MK
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGA-------------VDRAFDVLAE-------MKA--- 570
Query: 464 EEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSAC 523
E H + D IT +++ G + A ++ + E K + +++C
Sbjct: 571 -ETHPI-----DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 524 SHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMP---MEPN 580
S G + I+D M ++ ++P ++ +VD+ G AG L +A +I+++ ++
Sbjct: 625 SQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 581 AYVWGTLLNSCRMHKN 596
+ +L+ +C KN
Sbjct: 684 TVSYSSLMGACSNAKN 699
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 200 KNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHAR 249
+ +++N + G+ + AL+LF M+ G++PN T++ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 7e-07
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 336 KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388
++V++N LI Y + G +EA+++F++++K +PNV ++S +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI----KPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 235 PNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIE 269
P+ VT+ +L+ + + G++EE + LF+ M+KRGI+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK 35
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 479 ITWNSMISGYGMNGLGENALATFEEMIEAGF 509
+T+NS+ISGY G E AL F+EM E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPD 512
+T+N++I G G E AL F+EM E G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 8e-06
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 GLEPNFVTWTSLLSSHARCGRLEETMDLFDMMR 264
GL+P+ VT+ +L+ R GR++E ++L D M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 238 VTWTSLLSSHARCGRLEETMDLFDMMRKRGI 268
VT+ SL+S + + G+LEE ++LF M+++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 238 VTWTSLLSSHARCGRLEETMDLFDMMRKRGIEV 270
VT+ +L+ + GR+EE ++LF M++RGIE
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 100 WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRAC 142
+N+++ G E ALKL+ +M+K G+ + +T+ ++I
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 378 ISWSAVIGAFASNGRGEEALDLFRKMQ 404
++++++I + G+ EEAL+LF++M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 238 VTWTSLLSSHARCGRLEETMDLFDMMRKRGIE 269
T+ +LL + A+ G + + + + M+ G++
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 311 NALICVYGKHGDVKVAQNLFSEIEEK----NIVSWNALITSYAEAGLCD 355
N LI Y K G V+ A LF+E++++ N+ +++ LI GLC
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID-----GLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 339 VSWNALITSYAEAGLCDEAVEVFSQLEK 366
V++N+LI+ Y +AG +EA+E+F ++++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKP 511
L T+N+++ G + ALA EEM +G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS 412
++++ +I GR EEAL+LF++M+ + +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 374 RPNVISWSAVIGAFASNGRGEEALDLFRKMQ 404
+P+V++++ +I GR +EA++L +M+
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 203 ISWNMMFSGFALNFDCDGALELFKRMELEGLEPN 236
+++N + G + ALELFK M+ G+EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 881 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.41 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.33 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.14 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.07 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.98 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.94 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.91 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.91 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.76 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.69 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.57 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.55 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.53 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.42 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.31 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.29 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.23 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.21 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.16 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.05 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.04 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.98 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.88 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.81 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.77 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.76 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.73 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.69 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.64 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.6 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.46 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.39 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.29 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.23 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.21 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.19 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.95 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.81 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.59 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.46 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.34 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.34 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.33 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.24 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 96.22 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.12 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.12 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.1 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.08 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.79 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.53 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.51 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.96 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.89 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.48 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.17 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.11 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.75 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.58 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.06 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.74 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.67 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.53 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.05 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.76 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.46 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.2 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.18 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.74 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.7 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.63 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.95 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.03 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 85.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.12 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.2 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.09 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 82.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 82.75 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 81.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.86 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.78 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.2 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.71 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-92 Score=862.91 Aligned_cols=687 Identities=32% Similarity=0.556 Sum_probs=626.1
Q ss_pred hHHHHHHHHHhhChhh---HHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHH
Q 002790 31 LDCFDHLLQQCKTIHQ---LKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVN 107 (881)
Q Consensus 31 ~~~~~~ll~~c~~~~~---~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~ 107 (881)
..+|..+++.|...+. ..++|..+.+.|..++..++|.||..|+++|+++.|.++|++|+. ||+.+||.+|.+|
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~ 162 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGY 162 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHH
Confidence 3456677777765443 478888888889889999999999999999999999999999998 9999999999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 002790 108 VSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQM 187 (881)
Q Consensus 108 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 187 (881)
++.|++++|+++|++|...|+.||..||+.++++|+..+++..+ .+++..+.+.|+.||..++|.|+.+|+++|++
T Consensus 163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG----REVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH----HHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 188 SDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 188 ~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHH
Q 002790 268 IEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNA 343 (881)
Q Consensus 268 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 343 (881)
+.||..+|+.++.+|++.|+++.|.++++.|. .||..+|+++|.+|++.|++++|.++|++|.+ ||..+|+.
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999998888888888888887774 35677777777777777777777777777742 55555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHccC---------------------------CCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDG---------------------------GSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~---------------------------~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
++.+|++.|++++|.++++.|.+.|. ..+..+|.++|+++|.+|++.|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 55555555555555555555544442 012356778888888888888888888
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK 476 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~ 476 (881)
+.+|++|.. ++.||..||+.+|.+|++.|.++.+.+++..+.+.|+.++..++|+||++|+++|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 888888875 5899999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV 556 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li 556 (881)
|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHH
Q 002790 557 DLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAK 636 (881)
Q Consensus 557 ~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 636 (881)
++|++.|++++|.+++++|+.+||..+|++|+.+|+.+++.+.++...+++.+++|.++..|..|+++|.+.|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCcceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHHHh
Q 002790 637 VRISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQRI 716 (881)
Q Consensus 637 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~~~ 716 (881)
+++.|+++|+++.||+||+++.+++|.|.+||..||+.+++++.++++..+|++.||.||+..++++ +++
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~--------- 782 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEV--------- 782 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHH---------
Confidence 9999999999999999999999999999999999999999999999999999999999999887633 332
Q ss_pred hhhhhhhhhhhcCccchHHHHHHHhhhccc
Q 002790 717 RADNIKSKHRIVGFRNLKLGLRLLLSLRST 746 (881)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (881)
++...+.+|+|++|.++.+..-..
T Consensus 783 ------~k~~~~~~hse~la~a~~l~~~~~ 806 (857)
T PLN03077 783 ------SKDDIFCGHSERLAIAFGLINTVP 806 (857)
T ss_pred ------HHHHHHHhccHHHHHHHhhhcCCC
Confidence 677889999999999999876443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-78 Score=722.18 Aligned_cols=557 Identities=32% Similarity=0.545 Sum_probs=509.7
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH
Q 002790 95 SSSLLWNSILRVNVSNGLYENALKLYVKMRKLG-VLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI 173 (881)
Q Consensus 95 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~ 173 (881)
++..+|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+ .+++..|.+.|+.||..+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a----~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCV----KAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHhCCCcchHH
Confidence 567799999999999999999999999998864 789999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCCh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRL 253 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 253 (881)
||.|+.+|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999888888888888888888777777666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEI 333 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 333 (881)
+.+.+++..|.+. |+.+|..+|++||++|+++|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~-----------------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 241 RAGQQLHCCVLKT-----------------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHh-----------------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6666665555555 46667888899999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh
Q 002790 334 EEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV 413 (881)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 413 (881)
.++|+++||++|.+ |++.|++++|+++|++|.+.|+.||..
T Consensus 286 ~~~~~vt~n~li~~---------------------------------------y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 286 PEKTTVAWNSMLAG---------------------------------------YALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred CCCChhHHHHHHHH---------------------------------------HHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 76655555555555 455555666666666676777788888
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Q 002790 414 TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGL 493 (881)
Q Consensus 414 t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~ 493 (881)
||+.++.+|++.|+++.|.+++..|.+.|+.||..++++||++|+++|++++|.++|++|.++|+.+||+||.+|+++|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 88888888888888888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|+++|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcce
Q 002790 574 NMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQS 653 (881)
Q Consensus 574 ~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s 653 (881)
+|+.+|+..+|++|+.+|+.+|+++.|..+++++.+..|++..+|..|+++|++.|+|++|.+++++|+++|+++.||+|
T Consensus 487 ~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s 566 (697)
T PLN03081 487 RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566 (697)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHHHhhhhhhhhhhhhcCccch
Q 002790 654 WIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQRIRADNIKSKHRIVGFRNL 733 (881)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (881)
|+++.+.+|.|.+|+..||+.+++++.++++..+|++.||+||+..++++++++ ++...+.+|+|
T Consensus 567 ~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~---------------~~~~~~~~hse 631 (697)
T PLN03081 567 WIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED---------------EEKVSGRYHSE 631 (697)
T ss_pred EEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH---------------HHHHHHHhccH
Confidence 999999999999999999999999999999999999999999999999888775 67788999999
Q ss_pred HHHHHHHhhhc
Q 002790 734 KLGLRLLLSLR 744 (881)
Q Consensus 734 ~~~~~~~~~~~ 744 (881)
++|.++.+.--
T Consensus 632 kla~a~~l~~~ 642 (697)
T PLN03081 632 KLAIAFGLINT 642 (697)
T ss_pred HHHHHhhCccC
Confidence 99999987753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=679.88 Aligned_cols=674 Identities=18% Similarity=0.234 Sum_probs=594.5
Q ss_pred hHHHHHHHHHh---hChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHHHHHHHH
Q 002790 31 LDCFDHLLQQC---KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLWNSILRV 106 (881)
Q Consensus 31 ~~~~~~ll~~c---~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~n~li~~ 106 (881)
.+.+..++..+ +...++..++..|...|+.|+..+|..++..|.+.+.++.+.++++.+.. +..+++..+|++|..
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 33444444444 55556688899999999999999999999999999999999999988765 556899999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 002790 107 NVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQ 186 (881)
Q Consensus 107 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 186 (881)
|++.|+++.|+++|++|. .||..+|+.+|.+|++.|++++| ..++++|...|+.||..+|+.++.+|++.++
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A----~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEA----LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHH----HHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 999999999999999996 47899999999999999999999 9999999999999999999999999999999
Q ss_pred hHHHHHHHhhcC----CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 002790 187 MSDSFKLFDKVR----VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 187 ~~~A~~l~~~m~----~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
++.+.+++..|. .+|..+||++|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998886 4789999999999999999999999999998 68999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHH
Q 002790 263 MRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWN 342 (881)
Q Consensus 263 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 342 (881)
|.+.|+.||..||+.++.+|++.++.+.+.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|.+||.++||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHH
Q 002790 343 ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVC 422 (881)
Q Consensus 343 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 422 (881)
.+|.+|++.|++++|+++|++|.+.+. .||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~----~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNV----SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC----CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 999999999999999999999999884 9999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHHcCChHHHHH
Q 002790 423 AESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE---KKDLITWNSMISGYGMNGLGENALA 499 (881)
Q Consensus 423 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 499 (881)
++.|+++.|.++|+.|.+ +|..+|+++|.+|++.|+.++|..+|++|. +||..||+.++.+|++.|+.+.+.+
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 999999999999999864 688999999999999999999999999997 5799999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---C
Q 002790 500 TFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM---P 576 (881)
Q Consensus 500 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m---~ 576 (881)
++..|.+.|+.+|..++++++.+|++.|++++|.++|+.+ .||..+|++|+.+|++.|+.++|.++|++| +
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999876 589999999999999999999999999998 6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCccee
Q 002790 577 MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSW 654 (881)
Q Consensus 577 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~ 654 (881)
.+||..||++++.+|.+.|++++|.++++.|.+. ..|+..+|..++++|.+.|++++|.+++++|. ++|++ ..|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~-~~~ 660 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP-AVW 660 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH-HHH
Confidence 7899999999999999999999999999999843 56678899999999999999999999999883 34432 223
Q ss_pred EEEcCeE--EEEe-----ec---cCCCcch-------------HHHHHHHHHHHHHHHHcCCcCCcchhh--------Hh
Q 002790 655 IEVKRKI--HMFS-----SG---NSLQSDL-------------KNVCEVLEELALQMENKGCVPDNDIIL--------WE 703 (881)
Q Consensus 655 ~~~~~~~--~~~~-----~~---~~~~~~~-------------~~~~~~l~~l~~~m~~~g~~pd~~~~l--------~~ 703 (881)
..+.+.. |.-. +. ....|.. ..-++...++.+.|++.|.+++..... ..
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f 740 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEE
Confidence 2221100 0000 00 0000110 011334456889999999998864221 12
Q ss_pred hhccccchhHHHhhh--hhhhhhhhhcCccchH
Q 002790 704 MMGKKNVKRIQRIRA--DNIKSKHRIVGFRNLK 734 (881)
Q Consensus 704 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 734 (881)
..++...++.+.+.. +.+..+++..||.+++
T Consensus 741 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 741 LTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 233445555555543 6677888888888854
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=595.64 Aligned_cols=513 Identities=17% Similarity=0.239 Sum_probs=483.4
Q ss_pred CCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHH
Q 002790 128 VLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGF-QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWN 206 (881)
Q Consensus 128 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~ 206 (881)
..++...|..++..|++.|+++.| .+++++|.+.|+ .++..+++.++..|++.|.+++|.++|+.|..||..+||
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eA----l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDC----IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHH----HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 356778899999999999999999 999999999995 578888999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 002790 207 MMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLA 286 (881)
Q Consensus 207 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 286 (881)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcc------CCChhHHHHHHHHHHHcCChHHHHHH
Q 002790 287 ADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIE------EKNIVSWNALITSYAEAGLCDEAVEV 360 (881)
Q Consensus 287 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l 360 (881)
+.+.|..+++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 38999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 002790 361 FSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVR 440 (881)
Q Consensus 361 ~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 440 (881)
|++|.+.+. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus 602 f~~M~e~gi----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 602 YQMIHEYNI----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHcCC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999884 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002790 441 VSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE----KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAF 516 (881)
Q Consensus 441 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 516 (881)
.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----c-------------------CCHHHHHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR----A-------------------GLLQEASDIVK 573 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~eA~~l~~ 573 (881)
+.++.+|++.|++++|.++|++|. +.|+.||..+|++++..|.+ + +..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999998 55999999999999976432 2 23467999999
Q ss_pred hC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccC
Q 002790 574 NM---PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKV 649 (881)
Q Consensus 574 ~m---~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~ 649 (881)
+| ++.||..+|+.++.++++.+..+.+..+++.+... .+++..+|+.|++++.+. .++|..++++|.+.|+.|.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99 78899999999998888899999999999877644 777889999999998432 3689999999999999886
Q ss_pred Cc
Q 002790 650 AG 651 (881)
Q Consensus 650 ~~ 651 (881)
..
T Consensus 915 ~~ 916 (1060)
T PLN03218 915 VS 916 (1060)
T ss_pred cc
Confidence 53
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=594.85 Aligned_cols=512 Identities=18% Similarity=0.265 Sum_probs=323.2
Q ss_pred hChhhHHHHHHHHHHhCC-CCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHH
Q 002790 42 KTIHQLKQVHNQLIVTGA-NASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLY 120 (881)
Q Consensus 42 ~~~~~~~~l~~~l~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~ 120 (881)
++..++.++++.|...|+ .++..+++.++..|.+.|.+++|.++|+.|+. ||..+||.+|.+|++.|++++|.++|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455555666666666664 34555566666666666666666666666665 66666666666666666666666666
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC--
Q 002790 121 VKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR-- 198 (881)
Q Consensus 121 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~-- 198 (881)
++|.+.|+.||..+|+.+|.+|++.|+++.| .+++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A----~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAM----FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666 6666666666666666666666666666666666666666664
Q ss_pred --CCCeehHHHHHHHHHhCCChhHHHHHHHHhHH--cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 002790 199 --VKNYISWNMMFSGFALNFDCDGALELFKRMEL--EGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEA 274 (881)
Q Consensus 199 --~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 274 (881)
.||..+||.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 35666666666666666666666666666654 45666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHH
Q 002790 275 IAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAE 350 (881)
Q Consensus 275 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~ 350 (881)
|+.+|.+|++.|+.+.|..+++.|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+|+++|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666666666666666653 566666666666666
Q ss_pred cCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHH
Q 002790 351 AGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNI 430 (881)
Q Consensus 351 ~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 430 (881)
.|++++|.++|++|.+.+ ..||..+||.||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.
T Consensus 697 ~G~~eeA~~lf~eM~~~g----~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIK----LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred CCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666655 3666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 002790 431 GREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFK 510 (881)
Q Consensus 431 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 510 (881)
|.+++.+|.+.|+.||..+|++|+.++.+ ++++|..+.+.+. .|+. .......+..++|+.+|++|++.|+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~-----~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVV-----SFDS-GRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhh-----hhhc-cccccccchHHHHHHHHHHHHHCCCC
Confidence 66666666666666666666666654321 2333333222111 1110 00011112234567777777777777
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 511 PDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 511 pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
||..||+.++.++++.+..+.+..+++.|. ..+..|+..+|+++++++++. .++|..++++|
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 777777777766656666666666666554 224555566666666665321 34566666666
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=536.78 Aligned_cols=453 Identities=20% Similarity=0.285 Sum_probs=375.6
Q ss_pred HHhhChhhHHHHHHHHHHhC-CCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHHHHHHHHHHcCCChhHH
Q 002790 39 QQCKTIHQLKQVHNQLIVTG-ANASAFLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLWNSILRVNVSNGLYENA 116 (881)
Q Consensus 39 ~~c~~~~~~~~l~~~l~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A 116 (881)
..++...++.+++..|...+ ..|+..+|+.++.+|++.++++.|.+++..+.. +..||+.+||.++..|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34455666677788887654 678999999999999999999999999988876 7788999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 002790 117 LKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDK 196 (881)
Q Consensus 117 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 196 (881)
.++|++|. .||..+|++++.+|++.|++++| ..++++|.+.|+.|+..+|+.++.++++.|..+.+.+++..
T Consensus 178 ~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A----~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 178 RRLFDEMP----ERNLASWGTIIGGLVDAGNYREA----FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHH----HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999996 47889999999999999999999 99999999999999999999999999999999999998877
Q ss_pred cC----CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 002790 197 VR----VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGA 272 (881)
Q Consensus 197 m~----~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 272 (881)
+. .+|..+||+||.+|++.|++++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 64 4688899999999999999999999999997 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcC
Q 002790 273 EAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAG 352 (881)
Q Consensus 273 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 352 (881)
.||+.++.+|++.|.++.|.++++.|.+.|+++|..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred ChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH-CCCCCchhHHHHHHHHHhhhchHHHH
Q 002790 353 LCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL-AKVVANSVTISGLLSVCAESAALNIG 431 (881)
Q Consensus 353 ~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a 431 (881)
+.++|.++|++|.+.|. .||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.+++++++.|++++|
T Consensus 406 ~~~~A~~lf~~M~~~g~----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 406 RGTKAVEMFERMIAEGV----APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred CHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 88888888888887774 77777777777777777777777777777765 46777777777777666666666666
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 002790 432 REIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAG 508 (881)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 508 (881)
.++++. .++.|+..+|++|+.+|++.|+++.|..+++++.+ | +..+|+.|+..|++.|++++|.+++++|.+.|
T Consensus 482 ~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 482 YAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 666543 34566666666666666666666666666665542 2 34566666666666666666666666666666
Q ss_pred CC
Q 002790 509 FK 510 (881)
Q Consensus 509 ~~ 510 (881)
++
T Consensus 559 ~~ 560 (697)
T PLN03081 559 LS 560 (697)
T ss_pred Cc
Confidence 54
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=331.17 Aligned_cols=579 Identities=15% Similarity=0.069 Sum_probs=410.5
Q ss_pred ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHH
Q 002790 43 TIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVK 122 (881)
Q Consensus 43 ~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~ 122 (881)
........+....+.. +.+...+..+...+.+.|++++|...++.+....+.+...|+.+...+.+.|++++|.++|++
T Consensus 310 ~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 310 NLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333344444444332 234555666677777777777777777776655556677777777777777777777777777
Q ss_pred HHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---
Q 002790 123 MRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV--- 199 (881)
Q Consensus 123 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~--- 199 (881)
+.+.. +.+...+..+...+...|+.++| ...+..+.+... .+......++..|.+.|++++|.++++++..
T Consensus 389 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 389 ATELD-PENAAARTQLGISKLSQGDPSEA----IADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhCCChHHH----HHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 76653 23444556666666777777777 666666655432 2234455666777777888888887777652
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002790 200 KNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVL 279 (881)
Q Consensus 200 ~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 279 (881)
.+...|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 345677777777888888888888888777553 3344456667777778888888888888777653 33556666777
Q ss_pred HHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHH
Q 002790 280 SVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDE 356 (881)
Q Consensus 280 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 356 (881)
..+...|+.+.+..+++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 77777778888887777776653 44556677777888888888888888877764 355677778888888888888
Q ss_pred HHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHH
Q 002790 357 AVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHG 436 (881)
Q Consensus 357 A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 436 (881)
|...|+++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++
T Consensus 620 A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 620 AVSSFKKLLALQ-----PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888877654 3455667777788888888888888888877642 3346677777777788888888888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 002790 437 HVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV 514 (881)
Q Consensus 437 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 514 (881)
.+.+.. +.+...+..+...|.+.|++++|.+.|+.+.. ++..++..++..+.+.|++++|.+.++++.+.. +.+..
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 777664 34566677777788888888888888877653 444666677777888888888888888877753 44566
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCR 592 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~ 592 (881)
.+..+...|...|++++|.+.|+++.+. .++++..++.+...+...|+ ++|+++++++ ...| +..++..+...+.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 7777777788888888888888888732 12346777788888888888 7788887776 3333 3456667777778
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 593 MHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 593 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
..|++++|...++++++..|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-30 Score=318.62 Aligned_cols=557 Identities=13% Similarity=0.063 Sum_probs=437.3
Q ss_pred HHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCc
Q 002790 69 VLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSF 148 (881)
Q Consensus 69 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 148 (881)
+...+...|++++|...|+......+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence 34455566777777777766554444566667777777777777777777777776653 34555667777777777777
Q ss_pred ccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CeehHHHHHHHHHhCCChhHHHHHH
Q 002790 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVK---NYISWNMMFSGFALNFDCDGALELF 225 (881)
Q Consensus 149 ~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~A~~l~ 225 (881)
++| ...++.+.+.. +.+...+..+...+...|++++|.+.|++.... +...+..++..+.+.|++++|.+++
T Consensus 380 ~~A----~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 380 EKA----AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred HHH----HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 777 66676666543 234556667777777778888888777766432 3345666777788888888888888
Q ss_pred HHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCC
Q 002790 226 KRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFED 305 (881)
Q Consensus 226 ~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 305 (881)
+++.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.+..+++.+.... +.
T Consensus 455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 8887543 4566778888888888888888888888887653 2344556667777788888888888888887654 55
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHH
Q 002790 306 YVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSA 382 (881)
Q Consensus 306 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~ 382 (881)
+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++++.+.. +.+...|..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 606 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-----PDSPEAWLM 606 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHHHHHH
Confidence 677888888888889999999998888754 345677788888899999999999999888754 556778889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 002790 383 VIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGC 462 (881)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 462 (881)
+...|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987653 3455677788888888999999999999888753 3456788888999999999
Q ss_pred HHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 002790 463 LEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMM 539 (881)
Q Consensus 463 ~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m 539 (881)
+++|.++++.+.+. +...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|.+.++.+
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988643 6677888888899999999999999999886 455577888889999999999999999998
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 540 VREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 540 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+. ...+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ .+|+..++++.+..|.++..
T Consensus 763 l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 763 LKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 843 2345788899999999999999999999988 233567788999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 618 YMLLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 618 ~~~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
+..++.+|.+.|++++|.++++++.+.+.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999988653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-21 Score=239.89 Aligned_cols=580 Identities=10% Similarity=0.010 Sum_probs=414.3
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHH----------------HHHHHHHHcCC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLW----------------NSILRVNVSNG 111 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------n~li~~~~~~g 111 (881)
++.+..+...- +-++.++..++..+.+.|+.++|.+.+++.....|.+...+ -.+...+.+.|
T Consensus 48 ~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 48 RQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred HHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 44444443322 23577888889999999999999999998877555555443 23344688899
Q ss_pred ChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 002790 112 LYENALKLYVKMRKLGVLGDGF-TFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDS 190 (881)
Q Consensus 112 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 190 (881)
++++|++.|+++.+.+ +|+.. ............++.++| ...++.+.+.. +-+...+..+...+...|+.++|
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A----~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEA----INQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHH----HHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999998753 34432 111112222345788888 88888887763 44667788888999999999999
Q ss_pred HHHHhhcCCCCe------e-----------------hHH----------------------------------HHHHHHH
Q 002790 191 FKLFDKVRVKNY------I-----------------SWN----------------------------------MMFSGFA 213 (881)
Q Consensus 191 ~~l~~~m~~~~~------~-----------------~y~----------------------------------~li~~~~ 213 (881)
.+.|+++..... . .+. .....+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 999987632110 0 000 1123355
Q ss_pred hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHH---------HHHH---HH
Q 002790 214 LNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEV-GAEA---------IAVV---LS 280 (881)
Q Consensus 214 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t---------~~~l---l~ 280 (881)
..|++++|...|++..... +.+...+..+...+.+.|++++|+..|++..+..-.. +... |... -.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 6788888888888887663 3356678888888888888888888888877654221 1111 1111 23
Q ss_pred HHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHH
Q 002790 281 VCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEA 357 (881)
Q Consensus 281 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A 357 (881)
.+.+.|+.+.|...++.+.+.. +.+...+..+...|...|++++|++.|++..+ | +...+..+...|. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 4567788888888888887763 45566777788888888888888888888764 3 3445656666664 4567888
Q ss_pred HHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHhhhchHHHHH
Q 002790 358 VEVFSQLEKLDGGSM----ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN-SVTISGLLSVCAESAALNIGR 432 (881)
Q Consensus 358 ~~l~~~m~~~~~~~~----~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 432 (881)
...++.+........ .......+..+...+...|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 888776543210000 0001223555667788899999999999999875 454 456667778889999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC----CH---------HHHHHHHHHHHHcCChHHHHH
Q 002790 433 EIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK----DL---------ITWNSMISGYGMNGLGENALA 499 (881)
Q Consensus 433 ~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----d~---------~~~~~li~~~~~~g~~~~A~~ 499 (881)
..++.+.+.. +.++..+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|.+
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999988754 234455555556678889999999999987642 11 112345667888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 002790 500 TFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PM 577 (881)
Q Consensus 500 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~ 577 (881)
+++. .+++...+..+...+.+.|++++|+..|++..+ ..|+ ...+..++..|...|++++|++.++.. ..
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8872 245556778888899999999999999999983 4565 788999999999999999999999987 34
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc------chHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCcc
Q 002790 578 EPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT------GSYMLLSNIYAASGRWEDAAKVRISAKT-KGLKK 648 (881)
Q Consensus 578 ~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~m~~-~g~~~ 648 (881)
.|+ ...+..+..++...|++++|.++++++++..|+++ ..+..++.++.+.|++++|++.|++... .|+.+
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 444 45677778888999999999999999998866544 3666779999999999999999998863 34543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-21 Score=241.71 Aligned_cols=557 Identities=11% Similarity=0.045 Sum_probs=341.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchH----------
Q 002790 66 AARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTF---------- 135 (881)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---------- 135 (881)
.-..++.+...++.+.|.+.++++..-.|.|+..+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 34456777888999999999998877667789999999999999999999999999998864 444333
Q ss_pred -------HHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhcCCC---Ceeh
Q 002790 136 -------PLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI-VNELIGMYAKMGQMSDSFKLFDKVRVK---NYIS 204 (881)
Q Consensus 136 -------~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~-~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~ 204 (881)
..+.+.+...|++++| .+.++.+.+.. +++... ...+.......|+.++|.+.|+++... +...
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA----~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~ 183 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEA----LASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGL 183 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHH----HHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHH
Confidence 2223457788999999 88888887653 333321 112222223459999999999988743 4457
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCC----------------CCHh---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002790 205 WNMMFSGFALNFDCDGALELFKRMELEGLE----------------PNFV---TWTSLLSSHARCGRLEETMDLFDMMRK 265 (881)
Q Consensus 205 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------------pd~~---ty~~li~~~~~~g~~~~A~~l~~~m~~ 265 (881)
+..+...+...|+.++|++.|+++...... ++.. .+...+..+-.....+.|...+.++..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 788888899999999999999998653210 0000 011111111111112233333333322
Q ss_pred cCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--CCh---hH
Q 002790 266 RGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--KNI---VS 340 (881)
Q Consensus 266 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~~~---~~ 340 (881)
....|+... ...-..+...|+.+.|...++...+.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..
T Consensus 264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 222222111 111223344555556665555555432 33445555555666666666666666655543 211 11
Q ss_pred HHH------------HHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 002790 341 WNA------------LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV 408 (881)
Q Consensus 341 ~~~------------li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (881)
|.. ....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+.
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-- 414 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-- 414 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 111 1223445566666666666655533 233444555555566666666666666655543
Q ss_pred CCc-hhHHHH------------------------------------------HHHHHhhhchHHHHHHHHHHHHHcCCCC
Q 002790 409 VAN-SVTISG------------------------------------------LLSVCAESAALNIGREIHGHVVRVSMNK 445 (881)
Q Consensus 409 ~p~-~~t~~~------------------------------------------ll~~~~~~g~~~~a~~i~~~~~~~g~~~ 445 (881)
.|+ ...+.. +...+...|++++|.+.+++.++... .
T Consensus 415 ~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~ 493 (1157)
T PRK11447 415 DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-G 493 (1157)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 222 222222 22333445566666666666555432 2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--------
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-------- 514 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------- 514 (881)
++.++..+...|.+.|++++|...++++.+ | +...+..+...+...++.++|+..++++......++..
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 344455555666666666666666665532 2 33333333334445566666666655543221111111
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 002790 515 -AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSC 591 (881)
Q Consensus 515 -t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~ 591 (881)
.+......+...|+.++|..+++. ..++...+..+.+.+.+.|++++|++.|++. ...| +...+..+...+
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD 647 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 122344556677777777777651 1334667788899999999999999999988 4444 467888999999
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...|++++|++.++++.+..|+++..+..++.++.+.|++++|.++++++.+..
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-18 Score=207.49 Aligned_cols=550 Identities=12% Similarity=0.045 Sum_probs=326.3
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHH-
Q 002790 63 AFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRA- 141 (881)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a- 141 (881)
+.++..|.+.|.+.|+.++|+..+++.....|.|...+..+ ..+ +++++|..+++++.+.. +-+...+..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHh
Confidence 44555566666666666666666666555444444444443 111 55566666666665542 2223333333332
Q ss_pred -------HHccCCcccccchHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChHHHHHHHhhcCCCCe---ehHHHHHH
Q 002790 142 -------CKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNEL-IGMYAKMGQMSDSFKLFDKVRVKNY---ISWNMMFS 210 (881)
Q Consensus 142 -------~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~L-i~~~~~~g~~~~A~~l~~~m~~~~~---~~y~~li~ 210 (881)
|.+. +.+ .+.++ .......|+..+.... ...|.+.|++++|++.+.++.+.++ .-...|-.
T Consensus 153 ~~~~~l~y~q~---eqA----l~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ 224 (987)
T PRK09782 153 VGQNALRLAQL---PVA----RAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFD 224 (987)
T ss_pred hccchhhhhhH---HHH----HHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2222 333 33333 2222222334433333 5666666666666666665553322 22333444
Q ss_pred HHHh-CCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccccc
Q 002790 211 GFAL-NFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIE-VGAEAIAVVLSVCADLAAD 288 (881)
Q Consensus 211 ~~~~-~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~ 288 (881)
.|.+ .++ +++..+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |+..++--++.-.....
T Consensus 225 ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~-- 297 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP-- 297 (987)
T ss_pred HHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--
Confidence 4554 244 555555332 12344555556666666666666666666665543222 33333322221111110
Q ss_pred hhHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHh-----------------------------hccCC--
Q 002790 289 HMGKVIHGFVIKGGFEDY-VFVKNALICVYGKHGDVKVAQNLFS-----------------------------EIEEK-- 336 (881)
Q Consensus 289 ~~a~~i~~~~~~~g~~~~-~~~~~~Li~~~~~~g~~~~A~~~~~-----------------------------~m~~~-- 336 (881)
..+..-+.. .+.++ ....-.++..+.+.++++.++++.. .|-..
T Consensus 298 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 298 VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 000000000 00000 0111123455555666655554432 22111
Q ss_pred -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCC---hHHHHHHH------------
Q 002790 337 -NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGR---GEEALDLF------------ 400 (881)
Q Consensus 337 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~---~~~A~~l~------------ 400 (881)
+....--+--...+.|+.++|.++|++...... ...++.....-++..|.+.+. ..++..+-
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 112222222334567888899998888876311 113344455577778877766 44443331
Q ss_pred HHH----------HH-CCCCC---chhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 002790 401 RKM----------QL-AKVVA---NSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEG 466 (881)
Q Consensus 401 ~~m----------~~-~g~~p---~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 466 (881)
.+. .. .+..| +...+..+..++.. ++.++|...+....... |+......+...+...|++++|
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHH
Confidence 111 11 12223 34455555555554 78888998777776654 4544444445555789999999
Q ss_pred HHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 467 HLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 467 ~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++|...+++.. .
T Consensus 529 i~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~ 604 (987)
T PRK09782 529 LAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---N 604 (987)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---H
Confidence 999998754 344567777788899999999999999998864 2233344444455566799999999999998 5
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHH
Q 002790 545 IEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLS 622 (881)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 622 (881)
+.|+...|..+...+.+.|++++|++.+++. ...|+ ...++.+...+...|++++|+..++++++..|.++..+..++
T Consensus 605 l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 605 IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6788889999999999999999999999988 55565 457777778899999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 002790 623 NIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.+|.+.|++++|...+++..+..
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-18 Score=203.45 Aligned_cols=560 Identities=10% Similarity=-0.003 Sum_probs=399.5
Q ss_pred CCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHH-----HcCCChhHHHHHHHHHHhCCCCCCcc
Q 002790 59 ANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVN-----VSNGLYENALKLYVKMRKLGVLGDGF 133 (881)
Q Consensus 59 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~ 133 (881)
..|+...|..++..+ ++.++|..+++++....|.+...+..+.... .+-.+.++|.+.++ .......|+..
T Consensus 107 ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~ 182 (987)
T PRK09782 107 RHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGK 182 (987)
T ss_pred cCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcH
Confidence 456666666655333 9999999999998876666777776666651 22334499999998 55544444555
Q ss_pred hHHHH-HHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhhcCCCCeehHHHHHHH
Q 002790 134 TFPLV-IRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAK-MGQMSDSFKLFDKVRVKNYISWNMMFSG 211 (881)
Q Consensus 134 t~~~l-l~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~~~~~~~y~~li~~ 211 (881)
+.... .+.+...++++++ ..++..+.+.+. .+..-...|-.+|.. .++ +++..+++...+.+...+..+...
T Consensus 183 vL~L~~~rlY~~l~dw~~A----i~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~ 256 (987)
T PRK09782 183 TLRTDLLQRAIYLKQWSQA----DTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATA 256 (987)
T ss_pred HHHHHHHHHHHHHhCHHHH----HHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHH
Confidence 55555 8899999999999 999999999863 445556777778888 477 889998776555688899999999
Q ss_pred HHhCCChhHHHHHHHHhHHcCCC-CCHhHHHHHHHHHHhcCChH-----------------HHHHHHHHHHHc-------
Q 002790 212 FALNFDCDGALELFKRMELEGLE-PNFVTWTSLLSSHARCGRLE-----------------ETMDLFDMMRKR------- 266 (881)
Q Consensus 212 ~~~~g~~~~A~~l~~~m~~~g~~-pd~~ty~~li~~~~~~g~~~-----------------~A~~l~~~m~~~------- 266 (881)
|.+.|+.++|.++++++...-.. |+..+|--++. +.+... -.+++.+...++
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS---KYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH---hccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999998754323 66666555543 333221 011111211111
Q ss_pred ---CCCCCHHHHHHHHHHHh--ccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--C---
Q 002790 267 ---GIEVGAEAIAVVLSVCA--DLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K--- 336 (881)
Q Consensus 267 ---g~~p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~--- 336 (881)
.+.|.... ..+.... ..+...++...+..+.+. .+.+....--+.-...+.|+.++|.++|+..-. +
T Consensus 334 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 334 KLLATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHhcCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 13333332 1222221 223444444444444443 133444444455566788999999999998765 1
Q ss_pred -ChhHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHccCCCCCCC--ChhhHHHHHHHHH
Q 002790 337 -NIVSWNALITSYAEAGL---CDEAVEV----------------------FSQLEKLDGGSMERP--NVISWSAVIGAFA 388 (881)
Q Consensus 337 -~~~~~~~li~~~~~~g~---~~~A~~l----------------------~~~m~~~~~~~~~~p--~~~~y~~li~~~~ 388 (881)
+....+-++..|.+.+. ..++..+ ++.....- +..++ +...|..+..++.
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHH
Confidence 22334466677776655 3333222 11111111 11234 6677888888887
Q ss_pred HCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
. +++++|...+.+.... .|+......+...+...|++++|...++.+... +|+...+..+...+.+.|+.++|..
T Consensus 489 ~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 7 8999999988887765 477655445555567899999999999987654 3444556677788999999999999
Q ss_pred HHHhcccCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 469 VFEQIEKKDLITWNS---MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 469 ~~~~m~~~d~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
.++...+.+...++. +.......|++++|+..+++..+. .|+...+..+..++.+.|++++|...+++.. ..
T Consensus 564 ~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l 638 (987)
T PRK09782 564 WLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---EL 638 (987)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---Hh
Confidence 999887654333333 333344559999999999999986 6788899999999999999999999999998 55
Q ss_pred CCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHH
Q 002790 546 EPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLS 622 (881)
Q Consensus 546 ~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 622 (881)
.|+ ...++.+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|.+..+....+
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 776 778889999999999999999999987 4555 4568899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 623 NIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
+...+..+++.|.+-+++....++
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999998887665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-18 Score=182.29 Aligned_cols=281 Identities=15% Similarity=0.163 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch-hHHHHH
Q 002790 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS-VTISGL 418 (881)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 418 (881)
.|+.+...+-..|+...|+..|++..+.. +.-...|-.|-..|...+.+++|...|.+.... .|+. ..+..+
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkld-----P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNl 292 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLD-----PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNL 292 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCC-----CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccce
Confidence 44444444444455445554444444422 111234444555555555555555555444432 3332 233333
Q ss_pred HHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChH
Q 002790 419 LSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGE 495 (881)
Q Consensus 419 l~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~ 495 (881)
...|-..|.++.|...+++.++.. +.-+..|+.|..++-..|++.+|...+++... + ...+.+.|...|...|..+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 333444555555555555544432 11245677777777777888888888877653 2 4567788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 496 NALATFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 496 ~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
+|..+|....+. .|.- ..++.|...|-+.|++++|+..+++.. .+.|+ ...|+.+...|...|+.+.|...+.
T Consensus 372 ~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 372 EATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred HHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 999999988874 4553 478889999999999999999999988 78998 7889999999999999999999998
Q ss_pred hC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHH
Q 002790 574 NM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWED 633 (881)
Q Consensus 574 ~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 633 (881)
+. .+.|.- ...+.|...+...|+..+|+.-|+.++++.|+.+..|..++.++.--.+|.+
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 87 666653 4788999999999999999999999999999999999999988776666665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=181.91 Aligned_cols=282 Identities=14% Similarity=0.153 Sum_probs=241.4
Q ss_pred HcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch-hHHHHHHHHHhhhchH
Q 002790 350 EAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS-VTISGLLSVCAESAAL 428 (881)
Q Consensus 350 ~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 428 (881)
..|+.++|...+-+..+.. +--.+.|+.|...+-..|+...|+..|++..+. .|+- ..|-.|-..+...+.+
T Consensus 196 a~Grl~ea~~cYlkAi~~q-----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhcccchhHHHHHHHHhhC-----CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 3566777777666666532 234578999999999999999999999999854 5653 4677788888888888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002790 429 NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMI 505 (881)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 505 (881)
+.|...+....... +....++..+...|...|.++.|+..+++..+. =...|+.|..++-..|++.+|.+.+.+.+
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 88888888776643 224567777888899999999999999998753 35799999999999999999999999999
Q ss_pred HcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-
Q 002790 506 EAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA- 581 (881)
Q Consensus 506 ~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~- 581 (881)
.. .|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..+++. .++|+.
T Consensus 348 ~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 348 RL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred Hh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 86 5554 488999999999999999999999988 67888 678899999999999999999999987 888885
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+|+.+...|...|+.+.|++.+.+++..+|.-+..+..|+.+|..+|++.+|+.-++...+-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999999999999999999999999988763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-16 Score=183.55 Aligned_cols=250 Identities=12% Similarity=0.039 Sum_probs=205.4
Q ss_pred CCChHHHHHHHHHHHHCC-CCCc-hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 002790 390 NGRGEEALDLFRKMQLAK-VVAN-SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 467 (881)
.+++++|.+.|++....+ ..|+ ...+..+...+...|++++|...++..++.. +.+...+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999998765 3343 3456666777788999999999999998763 223567888889999999999999
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 468 LVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 468 ~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
..|++..+ .+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 99998754 367889999999999999999999999999863 33456777888899999999999999999983
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002790 545 IEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-Y-------VWGTLLNSCRMHKNTDVAEAMASQIFGLITET 614 (881)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~-------~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 614 (881)
..|+ ...|+.+...+...|++++|++.|++. ...|+. . .++.....+...|++++|+.+++++++++|.+
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3565 788999999999999999999999986 444421 1 12222223445799999999999999999999
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 615 TGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
...+..++.+|.+.|++++|++.|++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-17 Score=184.54 Aligned_cols=267 Identities=13% Similarity=0.094 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc---hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 002790 379 SWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN---SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455 (881)
Q Consensus 379 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (881)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444433221111 1223333444444444444444444444321 223445555555
Q ss_pred HHHhcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 456 MYMKCGCLEEGHLVFEQIEKKD--------LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
.|.+.|++++|.+.++.+.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 6666666666666665554321 1134556667777888888888888887653 223456677777888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002790 528 LVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMA 604 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 604 (881)
++++|.++++++.+. .|+ ..+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|..++
T Consensus 229 ~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 229 DYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888732 343 456777888888888888888888887 45677777788888889999999999999
Q ss_pred HHHhhcCCCCcchHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCccCCc
Q 002790 605 SQIFGLITETTGSYMLLSNIYAA---SGRWEDAAKVRISAKTKGLKKVAG 651 (881)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~---~g~~~eA~~~~~~m~~~g~~~~~~ 651 (881)
+++.+..|++. .+..+...+.. .|+.++++.++++|.++++++.|.
T Consensus 306 ~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 306 REQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99988888765 55556666554 568999999999999988888775
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-17 Score=181.06 Aligned_cols=300 Identities=18% Similarity=0.130 Sum_probs=178.4
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 210 SGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 210 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
..+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------------- 104 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE----------------- 104 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-----------------
Confidence 34556777888888888887663 234456777778888888888888888877664311110
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 290 MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 290 ~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
....++..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+
T Consensus 105 ---------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 105 ---------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 0123456667777777778888777777765 3456677777777777888888777777776
Q ss_pred ccCCCCCCCC---hhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC
Q 002790 367 LDGGSMERPN---VISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM 443 (881)
Q Consensus 367 ~~~~~~~~p~---~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 443 (881)
.+. ..+. ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+.
T Consensus 170 ~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 170 LGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred hcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 542 1111 1234556666777777777777777776542 22233444455555555666666665555554432
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 444 NKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 444 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
.....+++.++..|.+.|++++|...++++.+ |+...+..++..+.+.|++++|..+|+++.+. .|+..++..++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 22234455555566666666666665555532 33344455555566666666666666655553 455555555555
Q ss_pred HHHc---cCCHHHHHHHHHHHHHhcCCCCCh
Q 002790 522 ACSH---AGLVNEGRRIFDMMVREFRIEPQM 549 (881)
Q Consensus 522 a~~~---~g~~~~A~~l~~~m~~~~~~~p~~ 549 (881)
.+.. .|+.+++..++++|.++ ++.|++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 5443 33555566666655532 444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-14 Score=164.12 Aligned_cols=538 Identities=15% Similarity=0.160 Sum_probs=386.5
Q ss_pred hhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCcchHHHHHHHHHccCCcccccchHH
Q 002790 79 LFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL--GVLGDGFTFPLVIRACKFMGSFRFRFSFGQ 156 (881)
Q Consensus 79 ~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 156 (881)
++.|.+.|.......|+|+...-.-.......|++..|+.+|...... ..+||... .+-.++.+.++.+.| .
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a----~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKA----L 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhH----H
Confidence 578888888877767777776655555666788999999999996543 34455432 122345677888888 6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHH---hc---CChHHHHHHHhhc---CCCCeehHHHHHHHHHhCCChhHHHHHHHH
Q 002790 157 IVHNHVLQMGFQGNVHIVNELIGMYA---KM---GQMSDSFKLFDKV---RVKNYISWNMMFSGFALNFDCDGALELFKR 227 (881)
Q Consensus 157 ~~~~~m~~~g~~~~~~~~~~Li~~~~---~~---g~~~~A~~l~~~m---~~~~~~~y~~li~~~~~~g~~~~A~~l~~~ 227 (881)
..|...++. .| ...++++.... .. ..+..+..++... ...|++..+.|...|...|+++.++++...
T Consensus 220 ~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 220 LAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 777666654 23 33333332221 11 2344555555543 245888999999999999999999999998
Q ss_pred hHHcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccccchhHHHHHHHHHhcCC
Q 002790 228 MELEGLE--PNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEA--IAVVLSVCADLAADHMGKVIHGFVIKGGF 303 (881)
Q Consensus 228 m~~~g~~--pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 303 (881)
+...... --..+|-.+.++|-..|++++|...|.+-.+. .++..+ +.-+-..+.+.|+++.+...|+.+.+. .
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~ 372 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-L 372 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-C
Confidence 8755311 12335778899999999999999999766554 455433 345567888999999999999998876 4
Q ss_pred CCcHHHHHHHHHHHHhcC----CHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH----HccCCCC
Q 002790 304 EDYVFVKNALICVYGKHG----DVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLE----KLDGGSM 372 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~~~~~~ 372 (881)
|.+..+...|...|...+ ..+.|..++.+..++ |...|-.+...|.+..-+. ++..|.... ..+
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~---- 447 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKG---- 447 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcC----
Confidence 666777788888887775 567788888777663 5566766666666544443 366665544 333
Q ss_pred CCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC---CCCCch-----hHHH-HHHHHHhhhchHHHHHHHHHHHHHcCC
Q 002790 373 ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA---KVVANS-----VTIS-GLLSVCAESAALNIGREIHGHVVRVSM 443 (881)
Q Consensus 373 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t~~-~ll~~~~~~g~~~~a~~i~~~~~~~g~ 443 (881)
..+.....|.+...+...|.+++|...|.+.... ...+|. .|.. .+-...-..++.+.|.+.|..+++...
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 3577788999999999999999999999988755 223333 2222 223334456789999999999987531
Q ss_pred CCchhHHHHHHHHHHhc-------CCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC
Q 002790 444 NKNILVQNGLLNMYMKC-------GCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEA-GFKPD 512 (881)
Q Consensus 444 ~~~~~~~~~Li~~y~~~-------g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd 512 (881)
..|++|.+. +...+|...+....+ .++..|.-+...+.+...+..|.+-|+...+. ...+|
T Consensus 528 --------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 528 --------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred --------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 234555444 567788888887754 46778888887888888888888877766643 22467
Q ss_pred HHHHHHHHHHHHcc------------CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--C
Q 002790 513 GVAFVAVLSACSHA------------GLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNMP--M 577 (881)
Q Consensus 513 ~~t~~~ll~a~~~~------------g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m~--~ 577 (881)
..+..+|...|... +..+.|+++|.+.+ ...| |...-|-+.-.++..|++.+|.++|.+.. .
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 77777777755432 44778888888887 3455 57777888889999999999999999883 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 578 EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 578 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..+..+|..+..+|...|++..|+++|+...+. ...+..+...|+.++.+.|++.+|.+.........
T Consensus 677 ~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 677 SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 235568999999999999999999999999877 34467888899999999999999999988776643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-15 Score=176.08 Aligned_cols=389 Identities=9% Similarity=0.004 Sum_probs=239.5
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 210 SGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 210 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++..+..
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~---------------------- 79 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE---------------------- 79 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Confidence 33444555555555555554311 2333345555555555555555555555544431
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 290 MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 290 ~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
|.+...+..+...+...|++++|...+++..+ | +.. +..+...+...|+.++|+..++++.+
T Consensus 80 --------------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 80 --------------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred --------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22233334444555555555555555555543 2 223 55555555556666666666666655
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch------hHHHHHHHHH-----hhhchH---HHHH
Q 002790 367 LDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS------VTISGLLSVC-----AESAAL---NIGR 432 (881)
Q Consensus 367 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~-----~~~g~~---~~a~ 432 (881)
.. +.+...+..+...+...+..++|+..++.... .|+. .....++... ...+.+ +.|.
T Consensus 145 ~~-----P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 145 RA-----PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred hC-----CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 33 22333444455555556666666665554432 2221 0011111111 112223 5566
Q ss_pred HHHHHHHHc-CCCCchh-HH----HHHHHHHHhcCCHHHHHHHHHhcccCC---H-HHHHHHHHHHHHcCChHHHHHHHH
Q 002790 433 EIHGHVVRV-SMNKNIL-VQ----NGLLNMYMKCGCLEEGHLVFEQIEKKD---L-ITWNSMISGYGMNGLGENALATFE 502 (881)
Q Consensus 433 ~i~~~~~~~-g~~~~~~-~~----~~Li~~y~~~g~~~~A~~~~~~m~~~d---~-~~~~~li~~~~~~g~~~~A~~l~~ 502 (881)
+.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+ . .....+...|...|++++|+..|+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666643 2222221 11 111234456788999999999887542 1 112225678888999999999999
Q ss_pred HHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHHcCCHH
Q 002790 503 EMIEAGFKP---DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR----------IEPQ---MEHYACMVDLLGRAGLLQ 566 (881)
Q Consensus 503 ~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~ 566 (881)
++.+..... .......+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 987643111 124566677788899999999999998874310 1123 234567788899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 567 EASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 567 eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+|+++++++ ...| +...+..+...+...|+.++|++.++++++.+|++...+..++..+.+.|++++|..+++++.+.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999987 3334 46688888899999999999999999999999999999999999999999999999999998875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-15 Score=176.43 Aligned_cols=346 Identities=8% Similarity=-0.031 Sum_probs=243.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 002790 240 WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGK 319 (881)
Q Consensus 240 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~ 319 (881)
...++..+.+.|++++|..+++...... +.+...+..++.....
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~------------------------------------p~~~~~l~~l~~~~l~ 88 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA------------------------------------KNGRDLLRRWVISPLA 88 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC------------------------------------CCchhHHHHHhhhHhh
Confidence 4456667777888888888877776653 2223344444455556
Q ss_pred cCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 320 HGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
.|++++|...|+++.+ | +...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-----P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-----SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCChHHH
Confidence 7777777777777764 2 34566666777777777777777777777643 34455677777777777777777
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK 476 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~ 476 (881)
...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...+++....
T Consensus 164 ~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777765543 2222222222335667777777777777766543334444455567778888888888888877542
Q ss_pred ---CHHHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-
Q 002790 477 ---DLITWNSMISGYGMNGLGEN----ALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ- 548 (881)
Q Consensus 477 ---d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~- 548 (881)
+...+..+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++|...+++..+ ..|+
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~ 317 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDL 317 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 56778888888888888875 789999988763 33455888888899999999999999999883 4565
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYV-WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~-~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
...+..+...|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...++++.+..|.+.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~----------- 386 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL----------- 386 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------
Confidence 567778889999999999999999887 45566544 33455668899999999999999999988864
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 002790 627 ASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 627 ~~g~~~eA~~~~~~m~~~ 644 (881)
...+++|...+.+..+.
T Consensus 387 -~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 387 -PQSFEEGLLALDGQISA 403 (656)
T ss_pred -hhhHHHHHHHHHHHHHh
Confidence 34556777777766654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-15 Score=174.16 Aligned_cols=322 Identities=13% Similarity=0.023 Sum_probs=265.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHH
Q 002790 312 ALICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388 (881)
Q Consensus 312 ~Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~ 388 (881)
..+..+.+.|++++|..+++.... .+...+..++.+....|++++|...|+++.+.. +.+...+..+...+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-----P~~~~a~~~la~~l~ 121 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-----VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHH
Confidence 355667789999999999998875 344566667778888999999999999999865 455678888899999
Q ss_pred HCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
+.|++++|...++++.+.. +.+...+..+...+...|+.++|...+..+......+ ...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998752 3345677788888999999999999999887765433 3333333 34788999999999
Q ss_pred HHHhcccC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHH
Q 002790 469 VFEQIEKK----DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNE----GRRIFDMMV 540 (881)
Q Consensus 469 ~~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----A~~l~~~m~ 540 (881)
.++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987643 33445556778889999999999999999864 3456678888999999999986 899999988
Q ss_pred HhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 541 REFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 541 ~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+.|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..
T Consensus 278 ---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 ---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred ---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 45676 678999999999999999999999987 44555 4577778888999999999999999999999998877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 618 YMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 618 ~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
+..++.++.+.|++++|.+.+++..+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7778999999999999999999987764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-13 Score=151.31 Aligned_cols=561 Identities=13% Similarity=0.091 Sum_probs=374.6
Q ss_pred HHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCccccc
Q 002790 73 YARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRF 152 (881)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 152 (881)
+...|++++|.+++.++.+..|.+...|..|...|-..|+.+++...+-..-... +-|..-|..+-....+.|++++|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA- 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA- 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH-
Confidence 3344999999999999988888899999999999999999999987665544332 33556777787888889999999
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCe-e-------hHHHHHHHHHhCCChhHHHHH
Q 002790 153 SFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY-I-------SWNMMFSGFALNFDCDGALEL 224 (881)
Q Consensus 153 ~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~-------~y~~li~~~~~~g~~~~A~~l 224 (881)
.-++...++.. +++....-.-..+|-+.|+...|.+-|.++-..++ + .--.+++.+...++-+.|.+.
T Consensus 227 ---~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 227 ---RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred ---HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999988874 44555556667889999999999999988764332 1 222345667777878999999
Q ss_pred HHHhHHcC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------------------HH----HH
Q 002790 225 FKRMELEG-LEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAE----------------------AI----AV 277 (881)
Q Consensus 225 ~~~m~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~----~~ 277 (881)
++.....+ -.-+...++.++..|.+..+++.|......+......+|.. .| .-
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 99887632 13344568889999999999999999998888722222221 11 12
Q ss_pred HHHHHhccccchhHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHHc
Q 002790 278 VLSVCADLAADHMGKVIHGFVIKGG--FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAEA 351 (881)
Q Consensus 278 ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~ 351 (881)
+.-+..+....+....+...+.... ...+...|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2334456667777777777777777 445677889999999999999999999999975 4567899999999999
Q ss_pred CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHH--------HCCCCCchhHHHHHHHHHh
Q 002790 352 GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQ--------LAKVVANSVTISGLLSVCA 423 (881)
Q Consensus 352 g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~ 423 (881)
|..++|...|+...... +-+...-..|-..+.+.|++++|++.+..+. ..+..|+..........+.
T Consensus 463 ~e~e~A~e~y~kvl~~~-----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred hhHHHHHHHHHHHHhcC-----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 99999999999999854 3455567778888999999999999999964 2335555555555666677
Q ss_pred hhchHHHHHHHHHHHHHcC----------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--------
Q 002790 424 ESAALNIGREIHGHVVRVS----------------------MNKNILVQNGLLNMYMKCGCLEEGHLVFEQI-------- 473 (881)
Q Consensus 424 ~~g~~~~a~~i~~~~~~~g----------------------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-------- 473 (881)
+.|+.++-..+-..|+... ..........++.+-.+.++.....+-...-
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 7787776554444443211 1111222223333333333322221111110
Q ss_pred ccCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 474 EKKDLI----TWNSMISGYGMNGLGENALATFEEMIEAGF--KPDG---VAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 474 ~~~d~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~---~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
..-++. .+.-++..+++.+++++|+.+...+.+... .++. ..-...+.+++..+++..|...++.|...++
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 011122 234456677778888888888777776432 2222 1123345566677788888877777775544
Q ss_pred CCCC---hhHHHHHHHHH-----------------------------------HHcCCHHHHHHHHHhC-CCCCCHHHHH
Q 002790 545 IEPQ---MEHYACMVDLL-----------------------------------GRAGLLQEASDIVKNM-PMEPNAYVWG 585 (881)
Q Consensus 545 ~~p~---~~~~~~li~~~-----------------------------------~~~g~~~eA~~l~~~m-~~~pd~~~~~ 585 (881)
...+ ...|++..+.. ..++.+.-|+..+-+. ...||.+..+
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHH
Confidence 3333 23344222222 2344555565544333 2335544444
Q ss_pred HHHHH-H----------HHcCCHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 586 TLLNS-C----------RMHKNTDVAEAMASQIFGLIT--ETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 586 ~Ll~~-~----------~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++.. + .+|-..-.+..+..+-.++-. +.-.+++.++.+|-..|-..-|..+|++..+-
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 33332 1 123334455666655555522 24578889999999999999999999988774
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-14 Score=168.15 Aligned_cols=444 Identities=10% Similarity=-0.007 Sum_probs=297.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcC--CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcC
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVR--VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g 251 (881)
+......|.+.|+++.|.+.|++.. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455667788899999999998764 3566778888888999999999999999888763 334557888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 002790 252 RLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFS 331 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~ 331 (881)
++++|+.-|......+-..+. ....++..... ..+........+. .+.+...+..+.. |........+..-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 999998888766544311111 11111111111 1111111111111 1121112222222 222111111111122
Q ss_pred hccCCCh---hHHHHHHHH---HHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 332 EIEEKNI---VSWNALITS---YAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 332 ~m~~~~~---~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
+..+.+. ..+..+... ....+++++|.+.|++..+.+. ..+.+...|+.+...+...|++++|+..|++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~--~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK--LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111 111111111 1234688999999999887542 0123456788888889999999999999999886
Q ss_pred CCCCCc-hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHH
Q 002790 406 AKVVAN-SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITW 481 (881)
Q Consensus 406 ~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~ 481 (881)
. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|
T Consensus 360 l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 360 L--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 5 454 4577777788888999999999999988764 345778888999999999999999999988642 56778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCh-h-------HHH
Q 002790 482 NSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM-E-------HYA 553 (881)
Q Consensus 482 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~-~-------~~~ 553 (881)
..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...|++.. .+.|+. . .++
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHH
Confidence 888999999999999999999998752 3346688889999999999999999999988 344431 1 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH
Q 002790 554 CMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRW 631 (881)
Q Consensus 554 ~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 631 (881)
.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..++++.++.+..... .+...+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~ 584 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISY 584 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHH
Confidence 2223344579999999999986 555654 478889999999999999999999999886654332 233345
Q ss_pred HHHHHHHHHHH
Q 002790 632 EDAAKVRISAK 642 (881)
Q Consensus 632 ~eA~~~~~~m~ 642 (881)
.+|.++.....
T Consensus 585 ~~a~~~~~~~~ 595 (615)
T TIGR00990 585 AEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHH
Confidence 55555544333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-13 Score=152.73 Aligned_cols=556 Identities=13% Similarity=0.055 Sum_probs=386.2
Q ss_pred HcCCChhHHHHHHhhCCC---CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH---ccCC
Q 002790 74 ARFGRLFDARNVFETAPF---DCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACK---FMGS 147 (881)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~---~~~~ 147 (881)
-..|++..|..+|..... .++||+.. .+..++++.|+.+.|+..|++..+.+. -+..++..|--.-. ....
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHH
Confidence 345899999999987432 45566543 233566788999999999999988642 12222222221111 1222
Q ss_pred cccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCC------eehHHHHHHHHHhCCChhHH
Q 002790 148 FRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKN------YISWNMMFSGFALNFDCDGA 221 (881)
Q Consensus 148 ~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~------~~~y~~li~~~~~~g~~~~A 221 (881)
+..+ .+.+...-.. -.-|+.+.+.|.+.|.-.|++..+..+...+...+ ..+|.-+.++|...|++++|
T Consensus 252 ~~~~----~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 252 YKKG----VQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHH----HHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 3333 4444443333 24578888999999999999999999988776433 24688889999999999999
Q ss_pred HHHHHHhHHcCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----cchhHHHHH
Q 002790 222 LELFKRMELEGLEPNFV--TWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLA----ADHMGKVIH 295 (881)
Q Consensus 222 ~~l~~~m~~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~ 295 (881)
...|.+.... .||.+ .+--+...|.+.|+++.+...|+...+.. +-+..|..++-..|+..+ ..+.+..++
T Consensus 327 ~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 327 FKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 9999887755 56654 35567889999999999999999988762 344556666666666553 334555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCH------HHHHHHHhhcc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcc
Q 002790 296 GFVIKGGFEDYVFVKNALICVYGKHGDV------KVAQNLFSEIE-EKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368 (881)
Q Consensus 296 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~------~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 368 (881)
....+.- +.|...|-.+..+|-...-+ ..|..++..-. .......|.+...+...|.+++|...|++....-
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 5544442 56677777777766554433 33443333322 3566788899999999999999999999887651
Q ss_pred ---CC--CCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhH-HHHHHHHHhhhchHHHHHHHHHHHHHcC
Q 002790 369 ---GG--SMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVT-ISGLLSVCAESAALNIGREIHGHVVRVS 442 (881)
Q Consensus 369 ---~~--~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~i~~~~~~~g 442 (881)
.. ....++..+--.+...+-..++.+.|.+.|..+.+. .|+-++ |..+.......+...+|...+..+....
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 10 001122223334556667778999999999999876 566544 3333323334467778888888877643
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHH------------cCChHHHHHHHHHHH
Q 002790 443 MNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK-----KDLITWNSMISGYGM------------NGLGENALATFEEMI 505 (881)
Q Consensus 443 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~------------~g~~~~A~~l~~~m~ 505 (881)
..++.+++-+.+.|.+..++..|.+-|..+.+ +|..+.-+|.+.|.+ .+..++|+++|.+.+
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 33555666667788888888888886665543 244444445554432 234678999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 002790 506 EAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM----PMEPNA 581 (881)
Q Consensus 506 ~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd~ 581 (881)
... +-|...-+.+.-.++..|++.+|..+|.+..+.. .-...+|-.+.++|..+|++-.|+++|+.. ..+.+.
T Consensus 640 ~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 640 RND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred hcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 764 4566677778888899999999999999998542 234567888999999999999999999876 334577
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc-------------------CCHHHHHHHHHHHH
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS-------------------GRWEDAAKVRISAK 642 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~eA~~~~~~m~ 642 (881)
.+...|..++...|.+.++.+....++...|.++..-+.++.+..+. +..++|.++|..|.
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999988776666655433 56778889999998
Q ss_pred hCCCc
Q 002790 643 TKGLK 647 (881)
Q Consensus 643 ~~g~~ 647 (881)
..+-+
T Consensus 797 ~~~d~ 801 (1018)
T KOG2002|consen 797 KNGDK 801 (1018)
T ss_pred hcCCC
Confidence 76644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-13 Score=162.61 Aligned_cols=419 Identities=11% Similarity=0.049 Sum_probs=293.2
Q ss_pred HHHhcCChHHHHHHHhhcCCCCee---hHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhH-HHHH--HHHHHhcCCh
Q 002790 180 MYAKMGQMSDSFKLFDKVRVKNYI---SWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT-WTSL--LSSHARCGRL 253 (881)
Q Consensus 180 ~~~~~g~~~~A~~l~~~m~~~~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-y~~l--i~~~~~~g~~ 253 (881)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+... +..+ ...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 346788888888888887643332 13377777788888889988888887 343332 3333 4577788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEI 333 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 333 (881)
++|+++|+++.+.. |.+..++..++..|...++.++|++.++++
T Consensus 119 d~Aiely~kaL~~d------------------------------------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 119 DQALALWQSSLKKD------------------------------------PTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHHHhhC------------------------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 88888888887763 344555667777888888888888888888
Q ss_pred cC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc
Q 002790 334 EE--KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN 411 (881)
Q Consensus 334 ~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 411 (881)
.. |+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|+++.++-... +.+.
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~ 236 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE 236 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH
Confidence 76 443334333333333555556888888888855 445667778888888888888888776653211 1111
Q ss_pred hhH------HHHHHHHH-----hhhch---HHHHHHHHHHHHH-cCCCCch-h----HHHHHHHHHHhcCCHHHHHHHHH
Q 002790 412 SVT------ISGLLSVC-----AESAA---LNIGREIHGHVVR-VSMNKNI-L----VQNGLLNMYMKCGCLEEGHLVFE 471 (881)
Q Consensus 412 ~~t------~~~ll~~~-----~~~g~---~~~a~~i~~~~~~-~g~~~~~-~----~~~~Li~~y~~~g~~~~A~~~~~ 471 (881)
..- ....++.- ..... .+.+..-++.+.. .+-.|.. . ..--.+-++.+.|++.++++.|+
T Consensus 237 ~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 237 HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 100 01111100 01122 2334444444443 1222321 1 22233557788999999999999
Q ss_pred hcccC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002790 472 QIEKK----DLITWNSMISGYGMNGLGENALATFEEMIEAG-----FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVRE 542 (881)
Q Consensus 472 ~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 542 (881)
.+... ...+-..+.++|...+++++|+.+|+++.... ..++......|..++...+++++|..+++.+.+.
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 99843 33456678899999999999999999997643 1223344678999999999999999999999852
Q ss_pred cC----------CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 543 FR----------IEPQ---MEHYACMVDLLGRAGLLQEASDIVKNM-P-MEPNAYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 543 ~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~l~~~m-~-~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
.. -.|+ ...+..++..+...|++.+|++.++++ . .+-|...+..+...+...|...+|++.++.+
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 0233 344566788899999999999999998 2 3346778889999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 608 FGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
....|.+..+...++.++...|+|++|..+.+.+.+.
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998887765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-14 Score=168.44 Aligned_cols=161 Identities=9% Similarity=0.021 Sum_probs=116.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCCH--
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKD-------LITWNSMISGYGMNGLGENALATFEEMIEAG-----------FKPDG-- 513 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~pd~-- 513 (881)
...|...|++++|+..|+++.+.+ ...+..+..++...|++++|.++++++.+.. -.|+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 445556666666666666553221 2234445556666777777777777776542 12332
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 002790 514 -VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLN 589 (881)
Q Consensus 514 -~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~ 589 (881)
..+..+...+...|++++|++.++++.. ..|+ ...+..+...+...|++++|++.+++. ...|+ ...+..+..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 2455667778889999999999999883 3554 778888999999999999999999987 55666 456667777
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 590 SCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 590 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
.+...+++++|+.+++++++..|+++.+
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7889999999999999999999999844
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-13 Score=137.24 Aligned_cols=410 Identities=10% Similarity=0.131 Sum_probs=271.8
Q ss_pred hhChhhHHHHHHHHHHhCCCCChHHHHHHHHHHH--cCCChhHH-HHHHhhCCC--------------------CCCCCH
Q 002790 41 CKTIHQLKQVHNQLIVTGANASAFLAARVLSIYA--RFGRLFDA-RNVFETAPF--------------------DCKSSS 97 (881)
Q Consensus 41 c~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~--~~g~~~~A-~~~~~~~~~--------------------~~~~~~ 97 (881)
.+..++.--++++|.+.|++.++.+--.|.+.-+ ...++.-| .+.|-.|.. ..|...
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~ 207 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTD 207 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCc
Confidence 3556666778999999999988887777665433 22222211 112211111 013466
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHH
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNEL 177 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~L 177 (881)
.+|.+||+++|+--..++|.+++++-.....+.+..+||.+|.+-+-.. . +.+..+|....+.||..|+|++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c----HHHHHHHHHhhcCCchHhHHHH
Confidence 7888888888888888888888888887777888888888887755333 3 7788888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHH-H
Q 002790 178 IGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEE-T 256 (881)
Q Consensus 178 i~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~-A 256 (881)
+.+.++.|+++.|.+ .|.+++.+|++.|+.|...+|..+|..+++.+++.+ |
T Consensus 280 L~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 888888888888764 478899999999999999999999999999998754 4
Q ss_pred HHHHHHHHH----cCCCC----CHHHHHHHHHHHhccccchhHHHHHHHHHhcC----CCCc---HHHHHHHHHHHHhcC
Q 002790 257 MDLFDMMRK----RGIEV----GAEAIAVVLSVCADLAADHMGKVIHGFVIKGG----FEDY---VFVKNALICVYGKHG 321 (881)
Q Consensus 257 ~~l~~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~Li~~~~~~g 321 (881)
..++.++.. +.++| |...|...+..|.+..+.+.|.++++.+.... +.++ .+-|..+....|...
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 444444443 22333 44567888999999999999999998876532 2232 345667778888888
Q ss_pred CHHHHHHHHhhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHH
Q 002790 322 DVKVAQNLFSEIEE----KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEAL 397 (881)
Q Consensus 322 ~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~ 397 (881)
..+.-...++.|.- |+..+...++++..-.++++-.-+++..+...| ++++..+ -+
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g---------ht~r~~l-----------~e 472 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG---------HTFRSDL-----------RE 472 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh---------hhhhHHH-----------HH
Confidence 88888888888874 666777778888888888888888888887765 2332222 23
Q ss_pred HHHHHHHHCCCCCchh---HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 002790 398 DLFRKMQLAKVVANSV---TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE 474 (881)
Q Consensus 398 ~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 474 (881)
+++..|......|+.. -+.....-|+ ..-.+..+..-..+.+. .......+.+.-.+.+.|+.++|.++|..+.
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3444444444344322 2222222111 11112222222233333 3345566667777888888888888888773
Q ss_pred c-CC----HHHHH---HHHHHHHHcCChHHHHHHHHHHHHcC
Q 002790 475 K-KD----LITWN---SMISGYGMNGLGENALATFEEMIEAG 508 (881)
Q Consensus 475 ~-~d----~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g 508 (881)
+ .| ....| -+++.-.+.+.+..|...++-|...+
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2 11 22334 33444455566677777777665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-13 Score=156.79 Aligned_cols=166 Identities=9% Similarity=0.080 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK---------DLITWNSMISGYGMNGLGENALATFEEMIEAG----------- 508 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------- 508 (881)
+..++.++|...+++++|..++..+... +......|.-+|...+++++|..+++++.+.-
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 3344445555555555555555544221 12223445555555666666666666665421
Q ss_pred --CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H
Q 002790 509 --FKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-Y 582 (881)
Q Consensus 509 --~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~ 582 (881)
..||-. .+..++..+...|++.+|++.++++.. ..| |......+.+.+...|.+.+|++.++.. ...|+. .
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 123333 334456667889999999999999983 355 5788889999999999999999999776 445654 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
+.......+...+++++|..+.+.+.+..|+++.+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 66677777888999999999999999999999844
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-13 Score=138.13 Aligned_cols=446 Identities=13% Similarity=0.083 Sum_probs=299.8
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--ccCCcccccchHHHHHHHHHHhCCCCchhH
Q 002790 96 SSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACK--FMGSFRFRFSFGQIVHNHVLQMGFQGNVHI 173 (881)
Q Consensus 96 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~ 173 (881)
.+.+=|.|+. +...|+..++.-+|+.|...|++.+...-..|++..+ .+.++.-+- .+.|-.|...|-. +..+
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E---~~~Fv~~~~~~E~-S~~s 189 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE---WEEFVGMRNFGED-STSS 189 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh---HHHHhhccccccc-cccc
Confidence 4445666665 4567889999999999999998888777666766533 333333330 2333334443321 1222
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCCh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRL 253 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 253 (881)
.+.|.+.+ ++-+...++..+|..||.++|+.-..+.|.+++++-.....+.+..+||.+|.+-.-..
T Consensus 190 --------WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 190 --------WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred --------cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 24455544 55666667788999999999999999999999999988877999999999996654332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchh----HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH-HHH
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHM----GKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKV-AQN 328 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~-A~~ 328 (881)
..+++.+|.+..+.||..|||++++..++.|+++. +.+++.+|++-|+.|...+|..+|..+++.++..+ |..
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 37899999999999999999999999999997664 55788999999999999999999999999887644 555
Q ss_pred HHhhccC------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCC---hhhHHHHHHHHHHCCCh
Q 002790 329 LFSEIEE------------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPN---VISWSAVIGAFASNGRG 393 (881)
Q Consensus 329 ~~~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~---~~~y~~li~~~~~~g~~ 393 (881)
++.++.. .|..-|...++.|....+.+-|.++-.-+..........|+ ..-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 24455677788888888888888876655543221112333 23466777888999999
Q ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 002790 394 EEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQI 473 (881)
Q Consensus 394 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 473 (881)
+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...+.....-++..+++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------ 482 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------ 482 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------
Confidence 99999999999888889999999999999999999999999999988775544443333333333222
Q ss_pred ccCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhH
Q 002790 474 EKKDLITWNSMISGYGMN--GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH 551 (881)
Q Consensus 474 ~~~d~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~ 551 (881)
..|+...-..+-..+++. .-.+.....-.+|.+..+.|. ..+.+.-.+.+.|..++|.+++..+.++..--|....
T Consensus 483 ~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 012211111111111111 111222223345555444443 4455555567888888888888877655444444444
Q ss_pred HH---HHHHHHHHcCCHHHHHHHHHhC
Q 002790 552 YA---CMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 552 ~~---~li~~~~~~g~~~eA~~l~~~m 575 (881)
.| -+++.-.+....-.|..+++-|
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 3344444555555555555544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-11 Score=128.07 Aligned_cols=467 Identities=14% Similarity=0.097 Sum_probs=337.8
Q ss_pred HHHHhcCChHHHHHHHhhcC---CCCeehHHHHHHHHHhCCChhHHHHHHHH----hHHcCCCCCHhHHHHHHHHHHhcC
Q 002790 179 GMYAKMGQMSDSFKLFDKVR---VKNYISWNMMFSGFALNFDCDGALELFKR----MELEGLEPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~ty~~li~~~~~~g 251 (881)
.+|++...++.|.+++.+.. ..+...|-+-...--++|+.+...+++.+ +...|+..+...|-.=...|-+.|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 34455556666666665543 23555565555555566666666666554 344566666666666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002790 252 RLEETMDLFDMMRKRGIEV--GAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNL 329 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 329 (881)
..-.+..+......-|+.- -..|+..--..|.+.+.++-++.++....+- ++.+..+|...+.+--..|..+.-..+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666666655443 2345666667777777777777777777664 455666777766666667888888888
Q ss_pred HhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 330 FSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 330 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
|.+... +....|-.....+-..|+...|..++.+..+.. +.+...|-.-+..-..+.++++|..+|.+....
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-----pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-----PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-----CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 877764 345667777777778888888888888888765 346678888888888888888888888888754
Q ss_pred CCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHH
Q 002790 407 KVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNS 483 (881)
Q Consensus 407 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~ 483 (881)
.|+...|.--+..---.+..++|.+++++.++. ++.-...|..+...+-..++++.|.+.|..-.+. .+..|-.
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 566655555555555677888888888877764 2333456777777888888888888888776543 4567777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAG 563 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g 563 (881)
|...=-+.|...+|..+|++..-.+ +-|...|...|+.=.+.|..+.|..+..+..++ +..+...|..-|.+..+.+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcc
Confidence 7777777888889999998888764 446668888888888999999999888888754 3444667777777777777
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 564 LLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 564 ~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+-....+.+++.. .|+-+...+...+.....++.|...|++++...|++..+|..+-..+.+.|.-++-.+++.+...
T Consensus 802 rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 7777777777664 35556667777888899999999999999999999999999999999999999999999987766
Q ss_pred CCCccCCcceeEEEcCeE
Q 002790 644 KGLKKVAGQSWIEVKRKI 661 (881)
Q Consensus 644 ~g~~~~~~~s~~~~~~~~ 661 (881)
. .|.-|..|..+..++
T Consensus 880 ~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 880 A--EPTHGELWQAVSKDI 895 (913)
T ss_pred c--CCCCCcHHHHHhhhH
Confidence 4 345566776554433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=145.57 Aligned_cols=257 Identities=12% Similarity=0.130 Sum_probs=180.5
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
..++..+...|+.|+..+|.++|..||..|+.+.|- .|.-|.- .-+-+...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356777788999999999999999999999999998 8887765 34557788999999988888877765
Q ss_pred CCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHH----HhCCCCc--------------hhHHHHHHHHHHhcCChH
Q 002790 127 GVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVL----QMGFQGN--------------VHIVNELIGMYAKMGQMS 188 (881)
Q Consensus 127 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~----~~g~~~~--------------~~~~~~Li~~~~~~g~~~ 188 (881)
.|.+.||..|+.+|...||+.. ++.+++.+..+. ..|+-.. ..-....+....-.|-++
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6778899999999999998865 333344222221 2222110 011122333344557778
Q ss_pred HHHHHHhhcCCCCe-ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 189 DSFKLFDKVRVKNY-ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 189 ~A~~l~~~m~~~~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
.+.+++..++.-.- .+.-..++-+..... -..++.......--.|+..+|..++++-..+|+.+.|..++.+|++.|
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 88888877763110 011112333333222 222333322221115899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 002790 268 IEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGD 322 (881)
Q Consensus 268 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 322 (881)
++.+.+.|..++-+ .++......+..-|...|+.|+..|+...+-.+.++|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999988876 77888888899999999999999998877766666444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-13 Score=136.88 Aligned_cols=478 Identities=14% Similarity=0.088 Sum_probs=287.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHH-HHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHH
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPL-VIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELI 178 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li 178 (881)
...|.+-|..+....+|+..|+-..+....||...... +-+.+.+.+.+.+|+++.+..+++.....-.....+.+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34455667777788899999998888877887655432 22345566777777444444444333222223344566666
Q ss_pred HHHHhcCChHHHHHHHhhcCC--CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHH--------HHHHHHHH
Q 002790 179 GMYAKMGQMSDSFKLFDKVRV--KNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTW--------TSLLSSHA 248 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~~--~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty--------~~li~~~~ 248 (881)
..+.+.|++++|...|+...+ ||..+--.|+-++-.-|+-++..+.|.+|...-..||..-| ..|+.--.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 677888999999999987653 56554444444555667888888888888754323322211 11221111
Q ss_pred hcCCh-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcC---CCCcHHHHHHHH
Q 002790 249 RCGRL-----------EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGG---FEDYVFVKNALI 314 (881)
Q Consensus 249 ~~g~~-----------~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g---~~~~~~~~~~Li 314 (881)
++..+ ++++-.--++..--+.|+-.. + ....++.+...- +..+.. -.-.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g---------~dwcle~lk~s~~~~la~dle--i~ka 426 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------G---------CDWCLESLKASQHAELAIDLE--INKA 426 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------c---------cHHHHHHHHHhhhhhhhhhhh--hhHH
Confidence 11111 111111111111111222110 0 001111111100 000000 0112
Q ss_pred HHHHhcCCHHHHHHHHhhccCCChhHHHHH----HHH-HHH-cCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHH
Q 002790 315 CVYGKHGDVKVAQNLFSEIEEKNIVSWNAL----ITS-YAE-AGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFA 388 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l----i~~-~~~-~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~ 388 (881)
.-|.+.|+++.|.++++-+.++|..+-.+. ... |.+ -.++.+|...-+...... .-+......--+...
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-----ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-----RYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-----ccCHHHhhcCCceee
Confidence 346677777777777777766544332221 111 122 223445554444433222 111111111112223
Q ss_pred HCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 389 SNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
.+|++++|.+.|++..... -......|| +.-.+-+.|++++|..
T Consensus 502 ~ngd~dka~~~ykeal~nd-----------------------------------asc~ealfn-iglt~e~~~~ldeald 545 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND-----------------------------------ASCTEALFN-IGLTAEALGNLDEALD 545 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc-----------------------------------hHHHHHHHH-hcccHHHhcCHHHHHH
Confidence 3556666666666655332 111222222 2234567788999999
Q ss_pred HHHhcc---cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 469 VFEQIE---KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 469 ~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
.|-++. ..+....-.+...|-...++.+|++++.+.... ++.|......|...|-+.|+-..|.+.+-+--+ -+
T Consensus 546 ~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yf 622 (840)
T KOG2003|consen 546 CFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YF 622 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--cc
Confidence 887765 347777778888898899999999999877664 566677889999999999999999988765431 23
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 546 EPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSC-RMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.-+.++...|..-|....-+++|+.+|++. -++|+..-|..++..| ++.|++..|..+|+.+....|.+......|..
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 446888888999999999999999999998 6789999999998885 67999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHH
Q 002790 624 IYAASGRWEDAAKVRI 639 (881)
Q Consensus 624 ~~~~~g~~~eA~~~~~ 639 (881)
.+...|.-+ +.++-+
T Consensus 703 i~~dlgl~d-~key~~ 717 (840)
T KOG2003|consen 703 IAGDLGLKD-AKEYAD 717 (840)
T ss_pred Hhccccchh-HHHHHH
Confidence 988887543 444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.4e-10 Score=124.41 Aligned_cols=589 Identities=12% Similarity=0.059 Sum_probs=373.9
Q ss_pred hChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHH
Q 002790 42 KTIHQLKQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYV 121 (881)
Q Consensus 42 ~~~~~~~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 121 (881)
++..++..+...+++.- +.+...|..|-..|-.+|+.+.+...+-....-.|.|...|..+-....+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666777777777655 45678899999999999999999998866555556788999999999999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCChHHHHHHHhhc
Q 002790 122 KMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIV----NELIGMYAKMGQMSDSFKLFDKV 197 (881)
Q Consensus 122 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~----~~Li~~~~~~g~~~~A~~l~~~m 197 (881)
+.++.. +++-..+---...|-+.|+...| ..-+.++.....+.|..-. ...+..|...++-+.|.+.++..
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~A----m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRA----METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHH----HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999874 44444444445668889999999 6666666555332332333 33445566667778888888766
Q ss_pred CC-----CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCC---------------------------CCHhHHHHHHH
Q 002790 198 RV-----KNYISWNMMFSGFALNFDCDGALELFKRMELEGLE---------------------------PNFVTWTSLLS 245 (881)
Q Consensus 198 ~~-----~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------------------pd~~ty~~li~ 245 (881)
.. -+...+|.++..+.+...++.|......+...... ++.... -++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 53 24457888899999999999999888887762111 222221 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 002790 246 SHARCGRLEETMDLFDMMRKRGI--EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDV 323 (881)
Q Consensus 246 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 323 (881)
++.+....+....+..-..+..+ .-+...|.-+..++...|....|..++..+.......+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455555555555555666663 3345667888888889999999999999888877666788888899999999999
Q ss_pred HHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccC----CCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 324 KVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDG----GSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 324 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
++|...|+.... | +...--+|-..+.+.|+.++|.+.+..+..-+. .....|+...--.....+.+.|+.++=
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988875 3 233444555677888999999988888653221 011123333334445667777777665
Q ss_pred HHHHHHHHHCC----------------------CCCchhHHHHHHHHHhhhchHHHHHHH------HHHHHHcCCCCch-
Q 002790 397 LDLFRKMQLAK----------------------VVANSVTISGLLSVCAESAALNIGREI------HGHVVRVSMNKNI- 447 (881)
Q Consensus 397 ~~l~~~m~~~g----------------------~~p~~~t~~~ll~~~~~~g~~~~a~~i------~~~~~~~g~~~~~- 447 (881)
..+-..|.... ..-...+...++.+-.+.++.....+- ..-....|+..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 44444442211 111112222223333332221111111 1111112333222
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHH----HHHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CCCHH
Q 002790 448 -LVQNGLLNMYMKCGCLEEGHLVFEQIEKK-----DLI----TWNSMISGYGMNGLGENALATFEEMIEA-GF--KPDGV 514 (881)
Q Consensus 448 -~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----d~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~pd~~ 514 (881)
..+.-++..+++.++.++|..+...+... +.. .-..++.+.+..+++..|...++.|... +. .|...
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34556677888888888888887776543 221 2344555666778888888888887754 11 11111
Q ss_pred -HHHHHHHHHH-----------------------------------ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-H
Q 002790 515 -AFVAVLSACS-----------------------------------HAGLVNEGRRIFDMMVREFRIEPQMEHYACMV-D 557 (881)
Q Consensus 515 -t~~~ll~a~~-----------------------------------~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li-~ 557 (881)
.|+..++... ..+.+..|.+.+-... ...|+...++.++ -
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHH
Confidence 2221111111 1255667777666555 4467744444332 2
Q ss_pred HHH----------HcCCHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc--------
Q 002790 558 LLG----------RAGLLQEASDIVKNM-PME-P--NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT-------- 615 (881)
Q Consensus 558 ~~~----------~~g~~~eA~~l~~~m-~~~-p--d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-------- 615 (881)
++. |.-..-.+..++++. ..+ + ...++-.+..+|...|=...|..+|+++++..|.+.
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~ 862 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNY 862 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcc
Confidence 221 111233445555443 111 2 345777899999999999999999999999866542
Q ss_pred ----chHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 616 ----GSYMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 616 ----~~~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
.+-..|.-+|.+.|+...|.+++++
T Consensus 863 dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 863 DLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2344678889999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-09 Score=113.68 Aligned_cols=509 Identities=12% Similarity=0.059 Sum_probs=387.7
Q ss_pred HHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHH
Q 002790 83 RNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHV 162 (881)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m 162 (881)
.+++....+..|.++..|...+. ..+.+.|.-++.+..+. ++.+ .-|.-++++...++.| +.+++..
T Consensus 366 ~RVlRKALe~iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s----~dLwlAlarLetYenA----kkvLNka 432 (913)
T KOG0495|consen 366 KRVLRKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQS----MDLWLALARLETYENA----KKVLNKA 432 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccch----HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 34454444445567888876654 45667788888888775 2222 3455677778888888 9999988
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC----C----CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCC
Q 002790 163 LQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR----V----KNYISWNMMFSGFALNFDCDGALELFKRMELEGLE 234 (881)
Q Consensus 163 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~----~----~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 234 (881)
.+. ++.+..+|.+-...--.+|+.+...+++++-. . -+...|-.=...|-..|..--+..+......-|+.
T Consensus 433 Re~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 433 REI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred Hhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence 775 77788888877777778899999888887532 1 13345666666677777777777788777776654
Q ss_pred CC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHH
Q 002790 235 PN--FVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNA 312 (881)
Q Consensus 235 pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 312 (881)
-. ..||..-...|.+.+.++-|..+|....+- .+-+...|......-...|..+....++...+.. .+.....|-.
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM 589 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLM 589 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHH
Confidence 32 347888899999999999999999887764 2334455666666666777888888888877765 3455566777
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH
Q 002790 313 LICVYGKHGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389 (881)
Q Consensus 313 Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~ 389 (881)
...-+-..|++..|+.++...-+ .+...|-..+..-..+..+++|..+|.+.... .|+...|.--+..---
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~------sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI------SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc------CCcchhhHHHhHHHHH
Confidence 77777888999999999988865 35578999999999999999999999998873 5677777777777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCch-hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002790 390 NGRGEEALDLFRKMQLAKVVANS-VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468 (881)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 468 (881)
.+..++|.+++++..+. -|+- ..|..+-+.+-+.++++.|...|..-.+. ++..+..|-.|.+.--+.|.+-.|+.
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 88999999999988865 5554 45666667777888888888877654432 34567788888888899999999999
Q ss_pred HHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 469 VFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 469 ~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
++++..- | |...|-..|+.-.+.|..+.|..+..+.++. ++.+...|..-|...-+.++-......++ .+
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kc 813 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KC 813 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hc
Confidence 9998763 3 7789999999999999999999999888875 45556677777777666666444443333 35
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 546 EPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.-|++..-.+...+-...++++|.+.|.+. ...|| ..+|.-+...+.++|.-+.-.+++.+...-+|.....|.....
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 667888888899999999999999999987 55665 4589999999999999999999999999999987776665543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-10 Score=126.26 Aligned_cols=128 Identities=12% Similarity=-0.062 Sum_probs=94.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPM-----EPNAYVWGTLLNSC 591 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~-----~pd~~~~~~Ll~~~ 591 (881)
+.++-.|++.-+..++...-+... ..- - ...|..||+.+....+.++|..+..+... .-|..-+..+.+..
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye-~~l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYE-DLL-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 334444554444444444333332 111 1 27899999999999999999999998832 24566778888899
Q ss_pred HHcCCHHHHHHHHHHHhhc---CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 002790 592 RMHKNTDVAEAMASQIFGL---ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKK 648 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~ 648 (881)
.+.+....+..+.+++.+. .|....++..+.+.....|+.+.-.++.+-+..-|+..
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 9999999999999988765 34345677788888899999999999999888888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-08 Score=105.39 Aligned_cols=510 Identities=10% Similarity=0.080 Sum_probs=305.5
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhH
Q 002790 94 KSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHI 173 (881)
Q Consensus 94 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~ 173 (881)
.-+...|-.-..--...+++..|.++|++.+... ..+...|.--+..=-+...+..| +.+++..+..=...| ..
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhA----RNv~dRAvt~lPRVd-ql 143 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHA----RNVWDRAVTILPRVD-QL 143 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHH----HHHHHHHHHhcchHH-HH
Confidence 3456666666666666778888888888887654 22333344344444455666666 778877766522222 24
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcC--CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcC
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVR--VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~--~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g 251 (881)
|--.+.+=-..|++..|.++|++.. +|+...|++.|..=.+.+..+.|..++++..-. .|++.+|-.-.+.=.+.|
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcC
Confidence 4455555567799999999998765 689999999999999999999999999998755 699999988888888999
Q ss_pred ChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHH
Q 002790 252 RLEETMDLFDMMRKR-GI-EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDY--VFVKNALICVYGKHGDVKVAQ 327 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~ 327 (881)
+...+..+|+...+. |- ..+...|.+....=.+...++.+..++...++. +|.+ ...|..+...=-+-|+.....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 999999999877654 11 011111222222222334445555555554443 1221 223333333333333322222
Q ss_pred HHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 002790 328 NLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAK 407 (881)
Q Consensus 328 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (881)
...-.= -.--++.+.+.+ +-|-.+|-..+..-...|+.+...++|++....
T Consensus 301 d~Iv~K-----------------------Rk~qYE~~v~~n-----p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 301 DAIVGK-----------------------RKFQYEKEVSKN-----PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred HHHhhh-----------------------hhhHHHHHHHhC-----CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 111000 000122222222 345555555555555666666666666666543
Q ss_pred CCCch-------hHHHHHHHHH---hhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHH----HhcCCHHHHHHHHHhc
Q 002790 408 VVANS-------VTISGLLSVC---AESAALNIGREIHGHVVRVSMNKNILVQNGLLNMY----MKCGCLEEGHLVFEQI 473 (881)
Q Consensus 408 ~~p~~-------~t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~~~g~~~~A~~~~~~m 473 (881)
++|-. ..|.-+=-+| ....+.+.+.++++..++ -++...+++..+=-+| .++.++..|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33321 1111111111 234667777777777776 2344445555543333 4667788888887776
Q ss_pred cc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhH
Q 002790 474 EK--KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH 551 (881)
Q Consensus 474 ~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~ 551 (881)
.. |-..++..-|..=.+.+++|.+..++++.++-+ +-|..+|......=...|+.+.|..+|.-+.....+......
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 53 345566666666677788888888888888864 445567777766667788888888888888754333334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHhhc----
Q 002790 552 YACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCR-----MHK-----------NTDVAEAMASQIFGL---- 610 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~-----~~g-----------~~~~A~~~~~~~~~~---- 610 (881)
|.+.|+.=...|.++.|..++++. ...+...+|.++..--. +.+ +...|..+|+++...
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 788888888888888888888877 33445557777665432 233 567788888887654
Q ss_pred CCCCc--chHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 611 ITETT--GSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 611 ~p~~~--~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.|... ......-+.-...|...+...+-.+|.+
T Consensus 590 ~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 590 TPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 22211 1222333333445666666555555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.8e-10 Score=113.76 Aligned_cols=442 Identities=14% Similarity=0.111 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhCCC-CCCCCHhHH-HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH-
Q 002790 64 FLAARVLSIYARFGRLFDARNVFETAPF-DCKSSSLLW-NSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIR- 140 (881)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 140 (881)
.+...|.+-|.......+|+..++-+.+ +.-||.-.. -.+...+.+..++.+|++.|+.....-...+..+-.-+++
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3444566777777788899999987765 445554433 3355678888999999999987776533333333333333
Q ss_pred ---HHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC----------------CC
Q 002790 141 ---ACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV----------------KN 201 (881)
Q Consensus 141 ---a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~----------------~~ 201 (881)
.+.+.|.++.| ..-+++..+. .|+..+.-.|+-++.-.|+-++..+.|.+|.. |+
T Consensus 282 igvtfiq~gqy~da----insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDA----INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred cCeeEEecccchhh----HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 35688999999 7778877765 57776655666666667999999999988741 11
Q ss_pred eehHHH-----HHHHHHhCCC--hhHHHHHHHHhHHcCCCCCHhH-HHH--------------------HHHHHHhcCCh
Q 002790 202 YISWNM-----MFSGFALNFD--CDGALELFKRMELEGLEPNFVT-WTS--------------------LLSSHARCGRL 253 (881)
Q Consensus 202 ~~~y~~-----li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t-y~~--------------------li~~~~~~g~~ 253 (881)
....|. .+.-+-+.+. .+++.-.--++...-+.||-.. |.- -..-|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 122222 2222222221 1222222222222222332111 000 11234567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHH-----HHHHHhcCCHHHH
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAV--VLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNAL-----ICVYGKHGDVKVA 326 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-----i~~~~~~g~~~~A 326 (881)
+.|+++++-+.++.-+.-...-+. .+...-...++..|.+.-+..+.. .-||.- .+.-...|++++|
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHH
Confidence 777777776665543222222111 112222223444444444433221 112211 1112234666666
Q ss_pred HHHHhhccCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHH
Q 002790 327 QNLFSEIEEKNIVSWNALIT---SYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKM 403 (881)
Q Consensus 327 ~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m 403 (881)
.+.+++....|...-.++.+ .+-..|++++|++.|-++...- ..+......+.+.|-...++.+|.+++.+.
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-----~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-----LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 66666666554433333222 2445566666666665554321 334444555555566666666666665444
Q ss_pred HHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--ccCCHHHH
Q 002790 404 QLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQI--EKKDLITW 481 (881)
Q Consensus 404 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m--~~~d~~~~ 481 (881)
... ++-|+...+.|...|-+.|+-.+|.+.+-.--+. ++.++.+...|...|....-+++|+..|++. .+|+..-|
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 321 2223444445555555555555555544332221 2344445555555555555555555555443 24444444
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 002790 482 NSMISGYGM-NGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525 (881)
Q Consensus 482 ~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (881)
..||..|.+ .|++.+|+++|+...+. ++-|..+..-|++.|..
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 444443332 34444444444444432 23333333334433333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=143.52 Aligned_cols=257 Identities=16% Similarity=0.137 Sum_probs=111.9
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHH-HHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 002790 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLL-SVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKC 460 (881)
Q Consensus 382 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 460 (881)
.+...+.+.|++++|++++++.......|+...|..++ ..+-..++.+.|.+.++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777888888888886544433235444444433 3445577788888888888765433 55566667766 688
Q ss_pred CCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 002790 461 GCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGLGENALATFEEMIEAG-FKPDGVAFVAVLSACSHAGLVNEGRRIFD 537 (881)
Q Consensus 461 g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~A~~l~~ 537 (881)
+++++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999888877643 366677888888889999999999999987543 34566678888888999999999999999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 002790 538 MMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET 614 (881)
Q Consensus 538 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 614 (881)
+..+ ..|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|.|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9983 4675 7788889999999999999888877661 23455678899999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 615 TGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+.....+++++.+.|+.++|.++++++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999886543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-09 Score=110.60 Aligned_cols=284 Identities=13% Similarity=0.106 Sum_probs=214.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCC--CCchhHHHHHHHHHh
Q 002790 346 TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV--VANSVTISGLLSVCA 423 (881)
Q Consensus 346 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~ 423 (881)
.++-...+.+++..-.......|. +.+...-+....+.....++++|+.+|+++.++.. --|..+|+.++-.-.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf----~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGF----PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 445555566777777777776662 22222222333445566788999999999887631 125567777765544
Q ss_pred hhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHH
Q 002790 424 ESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALAT 500 (881)
Q Consensus 424 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l 500 (881)
...++.--.+....+ -+-.+.|...+.+.|.-.++.++|...|++..+- ....|+.|..-|....+...|++-
T Consensus 311 ~~skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 333322211111111 1234566777889999999999999999998754 457899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--CC
Q 002790 501 FEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM--PM 577 (881)
Q Consensus 501 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m--~~ 577 (881)
++..++-. +-|...|..|.++|.-.+...-|+-+|++.. .++|+ ...|.+|.++|.+.++.++|++.|++. ..
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99999874 6677899999999999999999999999998 67775 899999999999999999999999988 33
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 578 EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-------ITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 578 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
+.+...+..|...+.+.++.++|.+.+++-++. .|....+...|+.-+.+.+++++|..+....
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 345689999999999999999999999988763 3444445556888899999999998876644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=121.98 Aligned_cols=276 Identities=12% Similarity=0.059 Sum_probs=132.2
Q ss_pred cCCHHHHHHHHhhccCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHH--HHHHHHHHCCChH
Q 002790 320 HGDVKVAQNLFSEIEEK--NI-VSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWS--AVIGAFASNGRGE 394 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~--~li~~~~~~g~~~ 394 (881)
.|+++.|++.+....+. +. ..|........+.|+.+.|...+.++.+. .|+...+. .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL------ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHHCCCHH
Confidence 46666666655554431 11 12222233335566666666666666552 33332222 2244556666666
Q ss_pred HHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCCHHHHH
Q 002790 395 EALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNIL-------VQNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 395 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~-------~~~~Li~~y~~~g~~~~A~ 467 (881)
+|...++++.+.. +-+...+..+...+...|+++.+.+++..+.+.+..++.. ++..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666665543 2233344445555555555555555555555544332111 1122222222333344445
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 002790 468 LVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFR 544 (881)
Q Consensus 468 ~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~ 544 (881)
++++.+.+ .++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...++
T Consensus 250 ~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 250 RWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--
Confidence 55554432 24555555566666666666666666665553 333311 1222233445566666666555532
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 545 IEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
.|+ +..+.++...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333 334445555555555555555555544 3345544444444455555555555555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=120.69 Aligned_cols=279 Identities=12% Similarity=0.045 Sum_probs=162.5
Q ss_pred hcCCHHHHHHHHhhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChh--hHHHHHHHHHHCCCh
Q 002790 319 KHGDVKVAQNLFSEIEE--KN-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVI--SWSAVIGAFASNGRG 393 (881)
Q Consensus 319 ~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~--~y~~li~~~~~~g~~ 393 (881)
..|+++.|++.+.+..+ |+ ...+-.....+.+.|+.+.|.+.+.+..+. .|+.. ..-.....+.+.|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~------~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL------AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCcCchHHHHHHHHHHHHCCCH
Confidence 45677777777666544 22 222333345566667777777777766552 23322 223345666667777
Q ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHH-------HHHHHHHhcCCHHHH
Q 002790 394 EEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN-------GLLNMYMKCGCLEEG 466 (881)
Q Consensus 394 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~-------~Li~~y~~~g~~~~A 466 (881)
++|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+...... .++..-......+..
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777776653 2233455566666667777777777777776665432222111 111111122223444
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHH
Q 002790 467 HLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAF---VAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 467 ~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
.+.++..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 455555543 36777777888888888888888888888875 3444321 111112233466777777777776
Q ss_pred HhcCCCCC-h--hHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 541 REFRIEPQ-M--EHYACMVDLLGRAGLLQEASDIVKN--M-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 541 ~~~~~~p~-~--~~~~~li~~~~~~g~~~eA~~l~~~--m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
+. .|+ + ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred Hh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 343 2 4555677777777777777777773 2 4556666666666667777777777777776544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-09 Score=122.29 Aligned_cols=251 Identities=14% Similarity=0.088 Sum_probs=182.7
Q ss_pred HHHHHhcCCHHHHHHHHhhccC--CChhHHH--HHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH
Q 002790 314 ICVYGKHGDVKVAQNLFSEIEE--KNIVSWN--ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389 (881)
Q Consensus 314 i~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~ 389 (881)
.....+.|+++.|...+.++.+ |+..... .....+...|++++|...++++.+.. +.+...+..+...|.+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-----P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-----PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Confidence 3444677888888888887765 3332222 23556777888888888888887755 4456677788888888
Q ss_pred CCChHHHHHHHHHHHHCCCCCch-------hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 002790 390 NGRGEEALDLFRKMQLAKVVANS-------VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGC 462 (881)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 462 (881)
.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++.+-+. .+.++.....+...+...|+
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 88888888888888877654322 12333333333344445555555554332 34577888889999999999
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002790 463 LEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVR 541 (881)
Q Consensus 463 ~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~ 541 (881)
.++|.+++++..+.....--.++.+....++.+++++..++..+. .|+. ..+..+...|.+.+++++|.+.|+.+.
T Consensus 279 ~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al- 355 (398)
T PRK10747 279 HDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL- 355 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 999999998876543222223344555668999999999999876 4554 467788889999999999999999998
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 542 EFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 542 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
...|+...+..+...+.+.|+.++|.+++++.
T Consensus 356 --~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 356 --KQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred --hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56899999999999999999999999999865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-09 Score=112.78 Aligned_cols=213 Identities=15% Similarity=0.147 Sum_probs=168.8
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATF 501 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 501 (881)
.|+...+.+-++..++....++. .|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777788888888876544433 255566788999999999999988764 26677877777777788899999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 002790 502 EEMIEAGFKPD-GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP 579 (881)
Q Consensus 502 ~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p 579 (881)
++.++. .|. ...|..+.-+..+.++++++...|++..++ ++.-++.|+.....+..++++++|.+.|+.. ..+|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999885 444 447777777777899999999999999865 3334789999999999999999999999876 4444
Q ss_pred C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 580 N---------AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 580 d---------~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+ +.+-..++-.- -.+++..|+.+++++++++|.....|..|+..-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 22333333332 348999999999999999999999999999999999999999999997543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-10 Score=125.35 Aligned_cols=277 Identities=13% Similarity=0.047 Sum_probs=214.1
Q ss_pred ChHHHHHHHHHHHHccCCCCCCCCh-hhHHHHHHHHHHCCChHHHHHHHHHHHHCC--CCCchhHHHHHHHHHhhhchHH
Q 002790 353 LCDEAVEVFSQLEKLDGGSMERPNV-ISWSAVIGAFASNGRGEEALDLFRKMQLAK--VVANSVTISGLLSVCAESAALN 429 (881)
Q Consensus 353 ~~~~A~~l~~~m~~~~~~~~~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~ 429 (881)
+..+|...|.++..+ .+|. .....+..+|...+++++|.++|+...+.. ..-+..+|++.|--+-+.-
T Consensus 334 ~~~~A~~~~~klp~h------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v--- 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV--- 404 (638)
T ss_pred HHHHHHHHHHhhHHh------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---
Confidence 467788888885543 2333 444556688888899999999998887652 1224567777765443321
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 430 IGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKD---LITWNSMISGYGMNGLGENALATFEEMIE 506 (881)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 506 (881)
+..++.+-+-.--+-.+.+|.++.++|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.
T Consensus 405 -~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 405 -ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred -HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 12222222222224568999999999999999999999999987654 46788888888889999999999998875
Q ss_pred cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHH
Q 002790 507 AGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAY 582 (881)
Q Consensus 507 ~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~ 582 (881)
. .|... .|..+...|.+.++++.|.-.|+++. .+.|. .+....+...+.+.|+.|+|+.++++. ..+| |+.
T Consensus 484 ~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 V--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred C--CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 3 44433 67778888999999999999999998 67886 677788889999999999999999998 3343 444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.--.-+..+...+++++|.+.++++.+..|++..+|..++..|.+.|+.+.|+.-|.-|.+-
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 44455666778899999999999999999999999999999999999999999988877664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-08 Score=100.67 Aligned_cols=445 Identities=13% Similarity=0.102 Sum_probs=287.4
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHH
Q 002790 145 MGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV---KNYISWNMMFSGFALNFDCDGA 221 (881)
Q Consensus 145 ~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~A 221 (881)
.+++..| +.+++..+... ..+...|-..+.+=.++..+..|..+++.... +--..|.-.+..=-..|++..|
T Consensus 86 q~e~~RA----RSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRA----RSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHH----HHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 3445555 67777666544 34555666667777777777777777775432 1223455555555566777777
Q ss_pred HHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhc
Q 002790 222 LELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKG 301 (881)
Q Consensus 222 ~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 301 (881)
.++|++-.+- .|+...|.+.|+.=.+-+..+.|..+|++..--
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~----------------------------------- 203 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV----------------------------------- 203 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-----------------------------------
Confidence 7777776544 677777777777777777777777777776532
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCC
Q 002790 302 GFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERP 375 (881)
Q Consensus 302 g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p 375 (881)
.|++..|-.....=.++|.+..|..+|+...+ .+...+.++...=..+..++.|..+|+-..+.-. ...
T Consensus 204 --HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p---k~r 278 (677)
T KOG1915|consen 204 --HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP---KGR 278 (677)
T ss_pred --cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ccc
Confidence 35555555556666666666666666666543 1223344444444456667777777776666431 011
Q ss_pred ChhhHHHHHHHHHHCCChHHHHHH--------HHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCch
Q 002790 376 NVISWSAVIGAFASNGRGEEALDL--------FRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNI 447 (881)
Q Consensus 376 ~~~~y~~li~~~~~~g~~~~A~~l--------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~ 447 (881)
....|......=-+-|+.....+. |+.+.+.+ +-|-.++--.++.-...|+.+...++++.++..-.+.+.
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE 357 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence 133444444444445554433332 33444432 456667777777777889999999999998875332221
Q ss_pred -hHHHHHH----HH----HHhcCCHHHHHHHHHhccc---CCHHHHHHH----HHHHHHcCChHHHHHHHHHHHHcCCCC
Q 002790 448 -LVQNGLL----NM----YMKCGCLEEGHLVFEQIEK---KDLITWNSM----ISGYGMNGLGENALATFEEMIEAGFKP 511 (881)
Q Consensus 448 -~~~~~Li----~~----y~~~g~~~~A~~~~~~m~~---~d~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p 511 (881)
..+.-.| +. =....+.+.+.++|+...+ ....|+.-+ ..--.++.+...|.+++...+ |..|
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cP 435 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCC
Confidence 1122111 11 1255778888888877654 233344333 333446778889999888766 6689
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----HHHHHH
Q 002790 512 DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEPN----AYVWGT 586 (881)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd----~~~~~~ 586 (881)
...+|...|..=.+.+.+|....++++.. ...|. ..+|......=...|+.+.|..+|+-.-.+|. ...|.+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 99999999998889999999999999988 45664 67888888888889999999999987754443 457777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHh
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA-----ASG-----------RWEDAAKVRISAKT 643 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~eA~~~~~~m~~ 643 (881)
.|..-...|.++.|..+|+++++..+... ++...+.--. +.| ....|..+|+++..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 77777888999999999999988766544 5555554433 334 56677777776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-06 Score=91.77 Aligned_cols=540 Identities=13% Similarity=0.154 Sum_probs=302.4
Q ss_pred CCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCcchHH
Q 002790 58 GANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL-GVLGDGFTFP 136 (881)
Q Consensus 58 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~ 136 (881)
+..|+...|-.+=+.+ +.+..+...|++ .|-.-+..+.++|+...-...|...+.. .+.-....|.
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmpR-------Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~ 142 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMPR-------IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWD 142 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCCH-------HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchH
Confidence 4556666666555443 456666666754 7778888888999999988888886543 3344556788
Q ss_pred HHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCC----------CeehHH
Q 002790 137 LVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVK----------NYISWN 206 (881)
Q Consensus 137 ~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----------~~~~y~ 206 (881)
..+.-....+-++.+ ..+++..++. ++..-+..|..+++.+++++|-+.+..+... +...|.
T Consensus 143 lyl~Fv~~~~lPets----~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 143 LYLKFVESHGLPETS----IRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred HHHHHHHhCCChHHH----HHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 888877777777677 7777776553 4445778888899999999999998877532 334577
Q ss_pred HHHHHHHhCCCh---hHHHHHHHHhHHcCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 207 MMFSGFALNFDC---DGALELFKRMELEGLEPNFV--TWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSV 281 (881)
Q Consensus 207 ~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 281 (881)
.+-...+++-+. -....+++.+... -+|.. .|.+|.+.|++.|.+++|.++|++..+.- .+..-|+.+.++
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~ 290 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHH
Confidence 666666554332 2344555555533 56654 58999999999999999999998877652 344456666666
Q ss_pred HhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC---------------CChhHHHHHHH
Q 002790 282 CADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE---------------KNIVSWNALIT 346 (881)
Q Consensus 282 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~---------------~~~~~~~~li~ 346 (881)
|+.-.....+..+--.-.+.+-+.+.. +++-.+.-|+.+.+ .++..|..-+.
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 654322221111110000111111111 11112222222211 12333333222
Q ss_pred HHHHcCChHHHHHHHHHHHHccCCCCCCC-ChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHH---
Q 002790 347 SYAEAGLCDEAVEVFSQLEKLDGGSMERP-NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVC--- 422 (881)
Q Consensus 347 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--- 422 (881)
+..|+..+-...+.+..+.--.....- -...|..+.+.|-..|+.+.|..+|++..+.. -.+..-|-..+
T Consensus 358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAW 431 (835)
T ss_pred --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHH
Confidence 223445555555555544321000000 11235555555666666666666666554322 11111222222
Q ss_pred ----hhhchHHHHHHHHHHHHHc-----------CCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHH
Q 002790 423 ----AESAALNIGREIHGHVVRV-----------SMNK------NILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITW 481 (881)
Q Consensus 423 ----~~~g~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~ 481 (881)
.+..+++.|.++.+..... +.++ +..+|..+++.--..|-++....+++++.+--+.|-
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 2233444455444443321 1111 234445556666667777777778877765322222
Q ss_pred HHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCCCCh--hHH
Q 002790 482 NSMI---SGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSH---AGLVNEGRRIFDMMVREFRIEPQM--EHY 552 (881)
Q Consensus 482 ~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~---~g~~~~A~~l~~~m~~~~~~~p~~--~~~ 552 (881)
..++ .-+-.+.-++++.+.+++-+..=-.|+.. .|+..+.-+.+ .-.++.|..+|++.. + ++.|.. ..|
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-D-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-h-cCCHHHHHHHH
Confidence 2211 12233455777777777665542345543 55555554432 235888888888888 3 666552 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc--chHHHHHHHHH
Q 002790 553 ACMVDLLGRAGLLQEASDIVKNMPM--EPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT--GSYMLLSNIYA 626 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~l~~~m~~--~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~ 626 (881)
-.....=-+.|....|+.++++... ++. ...||..|.-....=-...-..+|+++++..|++. ....-.+++-.
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET 669 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 3333444466888888888888732 222 23667666554433334455678888888877653 23445677778
Q ss_pred HcCCHHHHHHHHHHHHh
Q 002790 627 ASGRWEDAAKVRISAKT 643 (881)
Q Consensus 627 ~~g~~~eA~~~~~~m~~ 643 (881)
+.|..+.|..++.--.+
T Consensus 670 klGEidRARaIya~~sq 686 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hhhhHHHHHHHHHhhhh
Confidence 88999999888874443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=107.21 Aligned_cols=325 Identities=13% Similarity=0.076 Sum_probs=233.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh--hhH
Q 002790 303 FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV--ISW 380 (881)
Q Consensus 303 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~--~~y 380 (881)
...|.+.+-...-.+-+.|....|+..|......-+..|.+-+....-..+.+.+. ...... +.|. ..=
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~~l-----~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVVGL-----PSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHhcC-----cccchHHHH
Confidence 34455555555556677889999999998877643334443333222222222221 111111 1111 111
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM--NKNILVQNGLLNMYM 458 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~ 458 (881)
-.+..++-.....+++..-.+.....|+.-+...-+....+.-...++++|..+|+++.+... -.|..+|+.++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 123456666667888888888888887665555545455555678899999999999998732 12556776654 33
Q ss_pred hcCC--HH-HHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 002790 459 KCGC--LE-EGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRI 535 (881)
Q Consensus 459 ~~g~--~~-~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l 535 (881)
+..+ +. -|..+++ +.+--+.|..++.+-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-
T Consensus 309 ~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 3332 22 2333322 223355677777788888899999999999999864 23345778888889999999999999
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 536 FDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 536 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
++.+. .+.| |-..|-.|..+|.-.+++.-|+-+|++. ..+| |...|.+|..+|.+.++.++|+..|.++.....
T Consensus 387 YRrAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99998 5666 5789999999999999999999999998 5555 678999999999999999999999999999877
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 613 ETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+...|..|++.|.+.++.++|...+++-.+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7889999999999999999999999987765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-09 Score=117.29 Aligned_cols=257 Identities=14% Similarity=0.016 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhccC--CCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHH
Q 002790 311 NALICVYGKHGDVKVAQNLFSEIEE--KNI--VSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGA 386 (881)
Q Consensus 311 ~~Li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~ 386 (881)
-.....+.+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-----P~~~~~l~ll~~~ 196 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-----PRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 3445666777888888888887643 333 233334677788889999999998888865 4455678888889
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHH---hhhchHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhc
Q 002790 387 FASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVC---AESAALNIGREIHGHVVRVSM---NKNILVQNGLLNMYMKC 460 (881)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~~~ 460 (881)
+.+.|++++|.+.+..+.+.++.+.......-..+. ...+..+.+.+.+..+.+... +.++..+..+...+...
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDC 276 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHC
Confidence 999999999999999998886543322211111111 222223333334444444322 24788888999999999
Q ss_pred CCHHHHHHHHHhcccC--CHHH-HHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHH
Q 002790 461 GCLEEGHLVFEQIEKK--DLIT-WNSMISGY--GMNGLGENALATFEEMIEAGFKPDGV---AFVAVLSACSHAGLVNEG 532 (881)
Q Consensus 461 g~~~~A~~~~~~m~~~--d~~~-~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~A 532 (881)
|+.++|.+++++..+. |... ...++..+ ...++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHH
Confidence 9999999999998753 3221 00133333 3357788899999888875 45544 556888899999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 533 RRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.+.|+... .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 355 ~~~le~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 355 ADAFKNVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999533 2256899988999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-08 Score=106.71 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=206.6
Q ss_pred ChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 002790 376 NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455 (881)
Q Consensus 376 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (881)
+......-.+-+...+++.+.+++++...+.. +++...+..-|..+...|+...-..+=..+++. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44444555567778889999999998887653 555555555666677777766666555555554 3556778888888
Q ss_pred HHHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEKKD---LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEG 532 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 532 (881)
.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888899999999999876543 468999999999999999999998877663 122222233444568889999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 002790 533 RRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP--------MEP-NAYVWGTLLNSCRMHKNTDVAEA 602 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~--------~~p-d~~~~~~Ll~~~~~~g~~~~A~~ 602 (881)
.++|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+... .++ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999988 77885 7778888888888999999999998762 112 34578889999999999999999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 603 MASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+++++.+.|.+..+|..++-+|...|+++.|++.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-11 Score=125.58 Aligned_cols=255 Identities=18% Similarity=0.179 Sum_probs=74.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 002790 244 LSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVL-SVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGD 322 (881)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 322 (881)
...+.+.|++++|++++++.......|+...|..++ ..+-..++.+.+...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555555555555554333322122222222211 1222233333333333333332211 23344445444 46666
Q ss_pred HHHHHHHHhhccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHH
Q 002790 323 VKVAQNLFSEIEE--KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLF 400 (881)
Q Consensus 323 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~ 400 (881)
+++|.+++...-+ ++...+..++..+.+.++++++.++++.+..... .+++...|..+...+.+.|++++|++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA---APDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T------T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666655432 3444555556666666666666666666554221 2344555666666666666666666666
Q ss_pred HHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCC
Q 002790 401 RKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE---KKD 477 (881)
Q Consensus 401 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~d 477 (881)
++..+. .|+ |..+.+.++..+...|+.+++.++++... ..|
T Consensus 170 ~~al~~--~P~----------------------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 170 RKALEL--DPD----------------------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHHHH---TT-----------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHHc--CCC----------------------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 666554 332 33344445555555555555444444432 234
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
...|..+..+|...|+.++|+..|++..... +.|......+..++...|+.++|.++.++..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 4556666666666677777777777766642 3355566666667777777777776666544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=109.91 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=165.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA 522 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 522 (881)
....+..+...|...|++++|...+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3566777888999999999999999987542 56788888999999999999999999998864 4455678888889
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVA 600 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A 600 (881)
+...|++++|.+.+++..+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999843222223567788899999999999999999887 3334 456788888889999999999
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 601 EAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888899999999999999999999887755
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-09 Score=118.17 Aligned_cols=246 Identities=14% Similarity=0.136 Sum_probs=161.5
Q ss_pred ChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHH-HHHH
Q 002790 392 RGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM--NKNILVQNGLLNMYMKCGCLE-EGHL 468 (881)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~-~A~~ 468 (881)
+..+|+..|...... +.-+......+..+|...+++++++++|+.+.+... --+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 367788888874333 233334556666778888888888888888876421 224555655543222111111 1222
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC
Q 002790 469 VFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP 547 (881)
Q Consensus 469 ~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p 547 (881)
+.+. ....+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+-+..-+.....+|.|...|+..+ ++.|
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 2222 2235678888888888888888888888887764 45 45577777667777777888888887766 4444
Q ss_pred Ch-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 548 QM-EHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 548 ~~-~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
+. ..|.-+.-.|.+.++++.|+-.|++. .+.|.. +....+...+.+.|+.|+|+++++++..++|.|+-.-+..+..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 31 23334566677888888888888777 555644 3444555557778888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 002790 625 YAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 625 ~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...+++++|+..++++++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh
Confidence 88888888888888877764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-08 Score=100.87 Aligned_cols=280 Identities=13% Similarity=0.091 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 320 HGDVKVAQNLFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
.|++.+|+++..+-.+ ..+..|..-..+--+.|+.+.+-.++.+..+... .++...+-+........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----DDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----CchHHHHHHHHHHHHhCCCchhH
Confidence 4555555555555433 1223333334444555555555555555555321 33444444555555555555555
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHH
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNI-------LVQNGLLNMYMKCGCLEEGHLV 469 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~-------~~~~~Li~~y~~~g~~~~A~~~ 469 (881)
..-..++.+.+ +-+........++|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 55555555443 223334444555555555555555555555555543332 3445555555555555555556
Q ss_pred HHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 002790 470 FEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIE 546 (881)
Q Consensus 470 ~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~ 546 (881)
++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ....-.+.+-++...-++..++..+.++..
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 666653 2566667777778888888888888888887766666 222334566777777777777766554444
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 547 PQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 547 p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+-+..++.+.|+.++|.+..++....
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4 56667777777777777777777755 56677777777777777777777777777766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-06 Score=90.93 Aligned_cols=305 Identities=9% Similarity=0.063 Sum_probs=150.9
Q ss_pred HHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC------C
Q 002790 55 IVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG------V 128 (881)
Q Consensus 55 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g------~ 128 (881)
....+.....+|...+......|-++-+.++++.... -++..-+.-|..+++.++.++|-+.+....... -
T Consensus 130 raLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~g 206 (835)
T KOG2047|consen 130 RALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKG 206 (835)
T ss_pred HhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcc
Confidence 3334445555666666666666777777777776554 444456667777777777777777776664321 1
Q ss_pred CCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhcCCC--Ceeh
Q 002790 129 LGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGN--VHIVNELIGMYAKMGQMSDSFKLFDKVRVK--NYIS 204 (881)
Q Consensus 129 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--~~~~ 204 (881)
+.+...|..+-...++..+.-.... +..+.+.+... -+| ...|+.|..-|.+.|.++.|..+|++-... .+.-
T Consensus 207 kSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrD 283 (835)
T KOG2047|consen 207 KSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRD 283 (835)
T ss_pred cchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhh
Confidence 2233345555555554443332211 02222222221 123 346777788888888888888887754321 1112
Q ss_pred HHHHHHHHHh----------------CC------ChhHHHHHHHHhHHcCC-----------CCCHhHHHHHHHHHHhcC
Q 002790 205 WNMMFSGFAL----------------NF------DCDGALELFKRMELEGL-----------EPNFVTWTSLLSSHARCG 251 (881)
Q Consensus 205 y~~li~~~~~----------------~g------~~~~A~~l~~~m~~~g~-----------~pd~~ty~~li~~~~~~g 251 (881)
++.+-..|++ .| +++-.+.-|+.+...+. +.++.+|..-. -+..|
T Consensus 284 Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~ 361 (835)
T KOG2047|consen 284 FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEG 361 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcC
Confidence 2222222221 11 11223333333332210 11222333222 22345
Q ss_pred ChHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHhccccchhHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCC
Q 002790 252 RLEETMDLFDMMRKRGIEVG-----A-EAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDY---VFVKNALICVYGKHGD 322 (881)
Q Consensus 252 ~~~~A~~l~~~m~~~g~~p~-----~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~~~~~g~ 322 (881)
+..+-...|.+..+. +.|. . ..|..+.+.|-..|+++.|+.+++...+-.++.- ..+|.....+=.+..+
T Consensus 362 ~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred ChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 555666666665543 2221 1 1244445555666666666666666655443322 3444445555555566
Q ss_pred HHHHHHHHhhccC---------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcc
Q 002790 323 VKVAQNLFSEIEE---------------------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368 (881)
Q Consensus 323 ~~~A~~~~~~m~~---------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 368 (881)
++.|++++++... ++...|...++.--..|-++....+++++.+..
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 6666666655431 112234444444444555555555566555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-08 Score=110.23 Aligned_cols=231 Identities=18% Similarity=0.194 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHHC-----C-CCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHH
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLA-----K-VVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN 451 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (881)
.+...+...|...|++++|..+++...+. | ..|... ...+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va----------------------------------~~l~ 245 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA----------------------------------SMLN 245 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH----------------------------------HHHH
Confidence 34444777777788888887777766543 1 011111 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCC-CCHH
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEK-------K----DLITWNSMISGYGMNGLGENALATFEEMIE-----AGFK-PDGV 514 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~ 514 (881)
.+...|...+++++|..+|+++.. + -..+++.|...|.+.|++++|...+++..+ .|.. |...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 345566666666666666665531 1 224566666777777777777666665543 1222 2222
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CC--C
Q 002790 515 -AFVAVLSACSHAGLVNEGRRIFDMMVREFR--IEPQ----MEHYACMVDLLGRAGLLQEASDIVKNM-------PM--E 578 (881)
Q Consensus 515 -t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~l~~~m-------~~--~ 578 (881)
-++.+...|+..+++++|..+++...+.+. ..++ ..+++.|...|...|++++|.+++++. .. .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 466677778889999999998887765432 2222 468999999999999999999999876 11 2
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 579 PN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGL-------ITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 579 pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+. ...++.|...|.+.+++++|.++|.+...+ .|....+|..|+.+|.+.|++++|.++.....
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 447788888999999999999999987654 34445678899999999999999999988775
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-08 Score=97.49 Aligned_cols=288 Identities=17% Similarity=0.152 Sum_probs=177.9
Q ss_pred CChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHH
Q 002790 216 FDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIH 295 (881)
Q Consensus 216 g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 295 (881)
.++++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+-+.+.++ ||. |
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T--------------------- 102 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-T--------------------- 102 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-c---------------------
Confidence 45666666666666431 222223344556666666666666666555543 110 0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCC
Q 002790 296 GFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKN---IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSM 372 (881)
Q Consensus 296 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 372 (881)
..........|..-|...|-+|.|+.+|..+.+.+ ......++..|-+..+|++|++.-+++.+.+....
T Consensus 103 -------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 103 -------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred -------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 01112344567788999999999999999998733 34567789999999999999999999988775211
Q ss_pred CCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHH-HHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHH
Q 002790 373 ERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTIS-GLLSVCAESAALNIGREIHGHVVRVSMNKNILVQN 451 (881)
Q Consensus 373 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (881)
..-=...|.-+...+....+.+.|..++.+..+. .|+.+--+ .+-+.....|+++.|.+.++.+.+.+...-..+..
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 1111235666777777788899999999988766 34433333 33345566777777777777777776666666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA--- 526 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--- 526 (881)
.|..+|...|+.++....+..+.+. +...-..+-..-....-.+.|..++.+-+.. +|+...+..++..-...
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccc
Confidence 7777777777777777766666432 3333333333333333345555555555444 67777777766654322
Q ss_pred CCHHHHHHHHHHHH
Q 002790 527 GLVNEGRRIFDMMV 540 (881)
Q Consensus 527 g~~~~A~~l~~~m~ 540 (881)
|...+....+++|.
T Consensus 332 g~~k~sL~~lr~mv 345 (389)
T COG2956 332 GRAKESLDLLRDMV 345 (389)
T ss_pred cchhhhHHHHHHHH
Confidence 33444445555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-08 Score=104.08 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 71 SIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 71 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
+-|-++|++++|++++.+....+|..+..|.....+|...|+++++.+--.+.++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 44667788888888888777644333777778888888888888877766665553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-06 Score=96.11 Aligned_cols=428 Identities=14% Similarity=0.085 Sum_probs=234.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCC
Q 002790 158 VHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV---KNYISWNMMFSGFALNFDCDGALELFKRMELEGLE 234 (881)
Q Consensus 158 ~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 234 (881)
.+.++....+..|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|....|..++++-....-.
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 334444445667888999999999999999999999997653 34467999999999999999999999876644323
Q ss_pred CCHhHHHHHH-HHH-HhcCChHHHHHHHHHHHHc--C----CCCCHHHHHHHHHHHhc----cc-------cchhHHHHH
Q 002790 235 PNFVTWTSLL-SSH-ARCGRLEETMDLFDMMRKR--G----IEVGAEAIAVVLSVCAD----LA-------ADHMGKVIH 295 (881)
Q Consensus 235 pd~~ty~~li-~~~-~~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~~~~~----~~-------~~~~a~~i~ 295 (881)
|+..+--.++ ..| -+.+..+++++.-.+.... + +.|- .|..+--+|.. .. ...++.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 5444432233 333 3456677777776666552 1 2222 22222222211 00 112233333
Q ss_pred HHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCC
Q 002790 296 GFVIKGG-FEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGG 370 (881)
Q Consensus 296 ~~~~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 370 (881)
+...+.+ -.|++..|- .--|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+...+.-+
T Consensus 468 e~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~- 544 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG- 544 (799)
T ss_pred HHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-
Confidence 3333322 222222222 2234444555555555444432 3444555555555555555555555554443221
Q ss_pred CCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHH
Q 002790 371 SMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQ 450 (881)
Q Consensus 371 ~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 450 (881)
.|......-+..-...++.++++.....+..- |+. .+.
T Consensus 545 ----~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~----------------------------we~------~~~---- 582 (799)
T KOG4162|consen 545 ----DNHVLMDGKIHIELTFNDREEALDTCIHKLAL----------------------------WEA------EYG---- 582 (799)
T ss_pred ----hhhhhchhhhhhhhhcccHHHHHHHHHHHHHH----------------------------HHh------hhh----
Confidence 11111111112222234444444444433211 000 000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc----cC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CC------HHHH
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIE----KK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFK--PD------GVAF 516 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~----~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd------~~t~ 516 (881)
.-..++-....+....+. ++ .+.++..+..-....+ ..+..-.. |...-+. |+ ...|
T Consensus 583 ------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 583 ------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred ------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHH
Confidence 000000111111221111 00 1112222111111110 00000000 1111111 12 1234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRM 593 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~ 593 (881)
......+.+.+..++|...+.+.. ++.|- ...|......+...|.++||.+.|... .+.|+ +.+..++...+.+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 455556777788888887777766 44554 567777778888889999998888776 56665 4588888888999
Q ss_pred cCCHHHHHH--HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 594 HKNTDVAEA--MASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 594 ~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.|+...|.. +...+.+.+|.++..|..++.++.+.|+.++|.+.|+...+-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 998888888 999999999999999999999999999999999999987754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-07 Score=96.23 Aligned_cols=252 Identities=14% Similarity=0.133 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHH
Q 002790 312 ALICVYGKHGDVKVAQNLFSEIEEK----NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAF 387 (881)
Q Consensus 312 ~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~ 387 (881)
.-..+-...|+.+.+-..+.+.-++ +....-+........|+.+.|..-++++.+.. +.+.........+|
T Consensus 123 ~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-----pr~~~vlrLa~r~y 197 (400)
T COG3071 123 LAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-----PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-----cCChHHHHHHHHHH
Confidence 3344445556666666666665542 23344455556666777777777777766654 45556667777777
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCch-------hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 002790 388 ASNGRGEEALDLFRKMQLAKVVANS-------VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKC 460 (881)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 460 (881)
.+.|++...+.++..|.+.|.--+. .+|..+++-+...+..+.-...++..-+ ..+.++....+++.-+..+
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHc
Confidence 7777777777777777777654443 4566777767666666665556655433 2344667777888899999
Q ss_pred CCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 002790 461 GCLEEGHLVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 461 g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
|+.++|.++..+..++ |.. -...-.+.+-++...-++..++-... .+-++-.+.+|..-|.+.+.+.+|...|+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred CChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998887654 443 11222344566777777776665543 233446788889999999999999999998
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 539 MVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 539 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.. ...|+..+|+.+.+.+.+.|+..+|.++.++.
T Consensus 354 Al---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 354 AL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 87 56899999999999999999999999998875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-07 Score=96.70 Aligned_cols=280 Identities=15% Similarity=0.028 Sum_probs=182.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH
Q 002790 304 EDYVFVKNALICVYGKHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y 380 (881)
..+..+...-.+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++.+.. +....+|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-----P~~a~sW 315 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-----PSKALSW 315 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-----CCCCcch
Confidence 444555555556666667777777777666652 33445555566666666666666666666643 3445677
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVAN-SVTISGLLSVCAESAALNIGREIHGHVVRVSMNK-NILVQNGLLNMYM 458 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~ 458 (881)
-++.--|...|+..+|.+.|.+.... .|. ...|..+..+++-.+..++|...+..+.+.=... -+..|. .--|.
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl--gmey~ 391 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL--GMEYM 391 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH--HHHHH
Confidence 77776666667777777777665432 222 2345566666666777777776666665521111 122222 22466
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CC-CCHHHHHHHHHHHHccCCH
Q 002790 459 KCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEA----G-FK-PDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 459 ~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-pd~~t~~~ll~a~~~~g~~ 529 (881)
+.++.+.|.+.|.+... .|+...+-+....-..+.+.+|..+|+..+.. + -+ -...+++.|..+|.+.+.+
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 77777788877777643 26667777666666677788888888776621 1 01 1345788888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMH 594 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~ 594 (881)
++|+..+++... -...+..++.++.-.|...|+++.|.+.|.+. .++||..+-..+++.+...
T Consensus 472 ~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 472 EEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999988872 22335788888888899999999999999877 7788887777777766544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-06 Score=90.55 Aligned_cols=393 Identities=10% Similarity=0.047 Sum_probs=220.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHH-HHhCCC-hhHHHHHHHHh-HHcCCCCCHhHHHHHHHHH
Q 002790 171 VHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSG-FALNFD-CDGALELFKRM-ELEGLEPNFVTWTSLLSSH 247 (881)
Q Consensus 171 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~-~~~~g~-~~~A~~l~~~m-~~~g~~pd~~ty~~li~~~ 247 (881)
...-...+..|...++-+.|...+.+.++.-...-+.|+.+ +-+.|. -.++.--+.+. ++. | ... ..|.+.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p--~aL-~~i~~l 170 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC---P--MAL-QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc---c--hHH-HHHHHH
Confidence 33445566778888899999999888876544444444433 333322 11111111111 111 0 000 001111
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cccchhHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCCHH
Q 002790 248 ARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCAD--LAADHMGKVIHGFVI-KGGFEDYVFVKNALICVYGKHGDVK 324 (881)
Q Consensus 248 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~-~~g~~~~~~~~~~Li~~~~~~g~~~ 324 (881)
.+.+ ...+...=..|....+.|...+.+.-+.+++. .++...+.+.+-.+. ..-++.|+.....+.+.+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 00000000112222333443344434433332 222222333222222 2335666667777777777777777
Q ss_pred HHHHHHhhccCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHH
Q 002790 325 VAQNLFSEIEEKNIVSWN---ALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFR 401 (881)
Q Consensus 325 ~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~ 401 (881)
+|...|++...-|..+.. ...-.+.+.|+.++...+...+.... ..+...|-.-...+...++++.|+.+-+
T Consensus 250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-----~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-----KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-----hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 777777665543322211 11222344555555555555544422 1222233333333344444555554444
Q ss_pred HHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CH
Q 002790 402 KMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DL 478 (881)
Q Consensus 402 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~ 478 (881)
+..+. .|+ ++..+-.-...+...|+.++|.-.|..... | +.
T Consensus 325 K~I~~--~~r----------------------------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 325 KCIDS--EPR----------------------------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred HHhcc--Ccc----------------------------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 44322 111 222222223456677888888888876653 3 77
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVL-SACSHA-GLVNEGRRIFDMMVREFRIEPQ-MEHYACM 555 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~-g~~~~A~~l~~~m~~~~~~~p~-~~~~~~l 555 (881)
.+|.-|+..|...|++.+|.-+-+..... ++-+..+...+. ..|.-. ..-++|..++++.. .+.|+ ....+.+
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLI 444 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHH
Confidence 88888899888888888888777665543 233444544442 233322 23678999998877 67888 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 556 VDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
...+...|...+++.++++. ...||....+.|...+...+.+.+|...|..++.++|.+.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999999999887 6779999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-10 Score=84.81 Aligned_cols=49 Identities=31% Similarity=0.626 Sum_probs=29.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 002790 235 PNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCA 283 (881)
Q Consensus 235 pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 283 (881)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5555666666666666666666666666666666666555555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-06 Score=94.48 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=119.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIEKKD-LITWNSMISGYGM--NGLGENALATFEEMIEAGFKPDG--VAFVAVLSACSH 525 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~~~d-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 525 (881)
+.++.+|. +..+.++++-....... ...+.+++....+ ......|.+++...-+. .|.. +.....+.-...
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 34444443 45566677666665432 3445555544433 23467788888877765 4444 355555666778
Q ss_pred cCCHHHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 002790 526 AGLVNEGRRIFD--------MMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--------PMEPNA-YVWGTLL 588 (881)
Q Consensus 526 ~g~~~~A~~l~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--------~~~pd~-~~~~~Ll 588 (881)
.|+++.|.+++. .+. +.+.. +.+...++..+.+.++.+-|..++.+. ..++.. ..|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999988 444 22333 456667888888888766666555543 222222 2333444
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 589 NSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
..-.++|+-++|..+++++.+.+|++......++.+|++. +.+.|..+-+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 4456789999999999999999999999999999999877 4666666544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-10 Score=84.57 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=44.4
Q ss_pred CChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhh
Q 002790 375 PNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAE 424 (881)
Q Consensus 375 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 424 (881)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999888874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-06 Score=85.95 Aligned_cols=435 Identities=11% Similarity=0.034 Sum_probs=247.1
Q ss_pred HHhcCChHHHHHHHhhcCCCC---eehHHHH-HHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 002790 181 YAKMGQMSDSFKLFDKVRVKN---YISWNMM-FSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEET 256 (881)
Q Consensus 181 ~~~~g~~~~A~~l~~~m~~~~---~~~y~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A 256 (881)
+....++..|..+++--...+ ..+-+.. ..++-..|++++|+..+.-+.... .|+...+..|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 344567777777776433211 1122333 345567899999999998877644 66677777777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC-
Q 002790 257 MDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE- 335 (881)
Q Consensus 257 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~- 335 (881)
..+-.... -++-.-..+++...+.++.+....+++.+.+.- .-.-+|....--.-.+++|.+++.++..
T Consensus 111 ~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87765432 233444455566677888888887777765432 2223344444444568899999998875
Q ss_pred -CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh
Q 002790 336 -KNIVSWNAL-ITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV 413 (881)
Q Consensus 336 -~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 413 (881)
|+-...|.- .-+|.+..-++-+.++++-..+.. +.+..+-|.......+.=.-..|.+-.+.+...+-..
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-----pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-----PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-----CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 444445543 346778888888888888777644 3344556655555555433344444444444332111
Q ss_pred HHHHHHHHHhhh-----chHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHH
Q 002790 414 TISGLLSVCAES-----AALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGY 488 (881)
Q Consensus 414 t~~~ll~~~~~~-----g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~ 488 (881)
| ..+.-.++. ..-+.|.+++--+.+. -+..--.|+-.|.+.+++.+|..+.+++...++.-|-.-.-.+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVF 326 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 0 011111111 2233444444333321 1223334666788888888888888877655444333222223
Q ss_pred HHcC-------ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 002790 489 GMNG-------LGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLG 560 (881)
Q Consensus 489 ~~~g-------~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~ 560 (881)
+..| ...-|.+.|+-.-+++..-|.+ --.++.+++.-..++++.+.++..+. .+ +..|...--.+..+++
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HH-hcCcchhhhHHHHHHH
Confidence 3333 2344555554444444333322 22334444445556777777777775 32 2223233334677788
Q ss_pred HcCCHHHHHHHHHhCCC-C-CCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhc-CCCCc-chHHHHHHHHHHcCCHHHHH
Q 002790 561 RAGLLQEASDIVKNMPM-E-PNAYVWGTLLN-SCRMHKNTDVAEAMASQIFGL-ITETT-GSYMLLSNIYAASGRWEDAA 635 (881)
Q Consensus 561 ~~g~~~eA~~l~~~m~~-~-pd~~~~~~Ll~-~~~~~g~~~~A~~~~~~~~~~-~p~~~-~~~~~l~~~~~~~g~~~eA~ 635 (881)
..|.+.+|+++|-+... + .|..+|.+++. +|.+.+..+.|..++ ++. .|.+. .....+++-|.+++.+=-|.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876621 1 34556655544 456667776665443 333 23222 23445667777888887777
Q ss_pred HHHHHHHhCC
Q 002790 636 KVRISAKTKG 645 (881)
Q Consensus 636 ~~~~~m~~~g 645 (881)
+.|+.+....
T Consensus 482 KAFd~lE~lD 491 (557)
T KOG3785|consen 482 KAFDELEILD 491 (557)
T ss_pred HhhhHHHccC
Confidence 7777776544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-07 Score=92.65 Aligned_cols=283 Identities=14% Similarity=0.148 Sum_probs=148.8
Q ss_pred cCCHHHHHHHHhhccCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh------hhHHHHHHHHHHC
Q 002790 320 HGDVKVAQNLFSEIEEKNIVSW---NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV------ISWSAVIGAFASN 390 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~------~~y~~li~~~~~~ 390 (881)
+.+.++|.++|-+|.+.|..|+ -++.+.|-+.|..+.|+++-..+.+ .||. ...-.|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-------spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-------SPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHHHHHh
Confidence 4566777777777766444433 3456666777777777777666665 3332 1223344556666
Q ss_pred CChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002790 391 GRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVF 470 (881)
Q Consensus 391 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~ 470 (881)
|-++.|..+|..+.+.+. - -......|+..|-+..+|++|+++-
T Consensus 121 Gl~DRAE~~f~~L~de~e-f-----------------------------------a~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-F-----------------------------------AEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred hhhhHHHHHHHHHhcchh-h-----------------------------------hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666654331 1 1222333445555555555555554
Q ss_pred HhcccCCHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002790 471 EQIEKKDLI--------TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVR 541 (881)
Q Consensus 471 ~~m~~~d~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~ 541 (881)
+++.+.+.. .|.-+...+....+.+.|..++++..+.+ |+.+ .-..+.+.....|+++.|.+.++...+
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 444322111 23333344444455666666666666542 2222 223344455566666666666666652
Q ss_pred hcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchH
Q 002790 542 EFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSY 618 (881)
Q Consensus 542 ~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 618 (881)
. .|+ ..+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.|.....+-+...|.-. .+
T Consensus 243 Q---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf 318 (389)
T COG2956 243 Q---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GF 318 (389)
T ss_pred h---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HH
Confidence 2 333 455556666666666666666666554 3333333333343333333344555555555555455433 33
Q ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHhCCCccCCc
Q 002790 619 MLLSNIYA---ASGRWEDAAKVRISAKTKGLKKVAG 651 (881)
Q Consensus 619 ~~l~~~~~---~~g~~~eA~~~~~~m~~~g~~~~~~ 651 (881)
..|++... ..|++.+.+..++.|....++..|.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 33333332 2356788888888888766666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=0.0002 Score=82.20 Aligned_cols=143 Identities=16% Similarity=0.269 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
...|..+..+-.+.|...+|++-|-+ .-|...|..++..+.+.|.+++-.+++...+++ .-.|.+. ..|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45788888888888888888877654 246678999999999999999999999888754 4555544 57889
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 002790 558 LLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
+|++.+++.|-++++. -||..-...+.+-|...+.++.|.-+|.. ...|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888774 46778888888999999999999988875 35677788888888888888765
Q ss_pred HHHH
Q 002790 638 RISA 641 (881)
Q Consensus 638 ~~~m 641 (881)
-+++
T Consensus 1243 aRKA 1246 (1666)
T KOG0985|consen 1243 ARKA 1246 (1666)
T ss_pred hhhc
Confidence 4433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-05 Score=84.21 Aligned_cols=452 Identities=14% Similarity=0.136 Sum_probs=216.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHH
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIG 179 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~ 179 (881)
|-.++..| ..+.+...++..+...+ +.+-...|.....-.+...|+.++| -...+..++. -.-+.+.|..+.-
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea----~~~vr~glr~-d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEA----YELVRLGLRN-DLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHH----HHHHHHHhcc-CcccchhHHHHHH
Confidence 33344433 45566666776666665 3333444554444445556666666 4433333332 1223445666655
Q ss_pred HHHhcCChHHHHHHHhhcC---CCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCC-HhHHHHHHHHHHhcCChHH
Q 002790 180 MYAKMGQMSDSFKLFDKVR---VKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPN-FVTWTSLLSSHARCGRLEE 255 (881)
Q Consensus 180 ~~~~~g~~~~A~~l~~~m~---~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ty~~li~~~~~~g~~~~ 255 (881)
.+-...++++|.+.|.... +.|...|.-+.-.-++.|+++.....-.+..+. .|. ...|..+..++.-.|++..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555677888888887543 345556665555556677777777766666654 343 3457777777778888888
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 002790 256 TMDLFDMMRKRGI-EVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIE 334 (881)
Q Consensus 256 A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 334 (881)
|..++++..+... .|+...|.-.....- -.....+.|.+++|.+.+....
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhh
Confidence 8888888776542 445444422221110 0112234455555555554443
Q ss_pred CC--C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHH-HHHHCCChHHHH-HHHHHHHHCC--
Q 002790 335 EK--N-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIG-AFASNGRGEEAL-DLFRKMQLAK-- 407 (881)
Q Consensus 335 ~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~-~~~~~g~~~~A~-~l~~~m~~~g-- 407 (881)
.. | ...-......+.+.++.++|..++..+... .||...|..... ++.+-.+.-+++ .+|....+.-
T Consensus 213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 21 1 111222334455556666666666666553 344444443332 222222222232 4444433221
Q ss_pred -CCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcc--------
Q 002790 408 -VVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLE---E-GHLVFEQIE-------- 474 (881)
Q Consensus 408 -~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~---~-A~~~~~~m~-------- 474 (881)
-.|-... ++......-.+...+++....+.|+++- +..+...|-.....+ + +..+...+.
T Consensus 287 ~e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 287 HECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 0111111 1111112222233344444444554332 222222221111111 0 111111110
Q ss_pred ------cCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 002790 475 ------KKDLITWN--SMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRI 545 (881)
Q Consensus 475 ------~~d~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~ 545 (881)
.|....|. -++..|-..|+++.|.++++..+.. .|+.+ -|..=.+.+.+.|++++|..++++.. ++
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~---el 434 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ---EL 434 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hc
Confidence 12233333 3455566667777777777766654 55544 34444456667777777777777665 22
Q ss_pred C-CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 002790 546 E-PQMEHYACMVDLLGRAGLLQEASDIVKNMPMEP-N--------AYVWGTLLNS--CRMHKNTDVAEAMASQI 607 (881)
Q Consensus 546 ~-p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~p-d--------~~~~~~Ll~~--~~~~g~~~~A~~~~~~~ 607 (881)
. ||..+-.--+.-..++.+.++|.++.......- + ...|-.+-.+ |.+.|++.+|.+=+..+
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2 233222244455566777777776665541110 1 1134333333 55666666665555444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-06 Score=94.60 Aligned_cols=206 Identities=13% Similarity=0.030 Sum_probs=120.5
Q ss_pred hCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-cchH
Q 002790 57 TGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGD-GFTF 135 (881)
Q Consensus 57 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 135 (881)
..++=++.+|-.|.-++.++|+++.+.+.|++...........|+.+-..|...|....|+.+++.-....-.|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344557889999999999999999999999987765556677899999999999999999999987654432343 3344
Q ss_pred HHHHHHHH-ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----------ChHHHHHHHhhcCC---C
Q 002790 136 PLVIRACK-FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMG-----------QMSDSFKLFDKVRV---K 200 (881)
Q Consensus 136 ~~ll~a~~-~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g-----------~~~~A~~l~~~m~~---~ 200 (881)
-..-+.|. +.+..+++++++.++.+......-......|-.+--+|...- ...++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444455 456778887776777664322211233444444444443221 11223333333321 1
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 002790 201 NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 201 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
|..+--.+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22111122223444455555555555555443344445555555555555555555555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-07 Score=106.86 Aligned_cols=210 Identities=15% Similarity=0.030 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002790 428 LNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEM 504 (881)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m 504 (881)
.++|...++.+++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444455555444432 22455666677777888888888888888753 3 5667888888899999999999999999
Q ss_pred HHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 002790 505 IEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA 581 (881)
Q Consensus 505 ~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~ 581 (881)
.+. .|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..+..+|...|++++|...++++ +..|+.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 886 44432 3334445566788999999999988733 2354 556778888899999999999999887 444554
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 582 Y-VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 582 ~-~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
. .++.+...+...| +.|...++.+.+..-..+..+..+...|.-.|+-+.+..+ +++.+.|
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4 4445555566666 4788877777665333232333367777778888877766 7777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-05 Score=88.68 Aligned_cols=438 Identities=14% Similarity=0.138 Sum_probs=229.6
Q ss_pred cCCChhHHHHHHhhCCCCCCCC-HhHHHHHHHHHHcCCChhHHHHHHHHHHh------------------CCCCCCcchH
Q 002790 75 RFGRLFDARNVFETAPFDCKSS-SLLWNSILRVNVSNGLYENALKLYVKMRK------------------LGVLGDGFTF 135 (881)
Q Consensus 75 ~~g~~~~A~~~~~~~~~~~~~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~------------------~g~~p~~~t~ 135 (881)
..|+++.|..+++.... .|+ ...|-.+.......|+..-|.+.|..+-+ ..+.-+...|
T Consensus 456 d~~df~ra~afles~~~--~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEM--GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred ccCchHHHHHHHHhhcc--CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 34789999998887654 244 34577777777777776666555543211 0011111111
Q ss_pred HHHHHHHH-ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCe-ehHHHHHHHHH
Q 002790 136 PLVIRACK-FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY-ISWNMMFSGFA 213 (881)
Q Consensus 136 ~~ll~a~~-~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~~y~~li~~~~ 213 (881)
..+=..++ -.+++..| +.+|-+- -.-..-|.+|....+|++|..+-+....|.. ..-.+.++++.
T Consensus 534 ykvra~lail~kkfk~a----e~ifleq---------n~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~ 600 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEA----EMIFLEQ---------NATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALM 600 (1636)
T ss_pred HHHHHHHHHHHhhhhHH----HHHHHhc---------ccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 11111111 11122222 3332110 0112345566666667766666554444322 12233344455
Q ss_pred hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHH
Q 002790 214 LNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKV 293 (881)
Q Consensus 214 ~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 293 (881)
..|+-++|-++-+ .|-.+ -+.|+.|.+.|.+.+|...... ...+..|......+..++.+..
T Consensus 601 dt~qd~ka~elk~--------sdgd~-laaiqlyika~~p~~a~~~a~n--~~~l~~de~il~~ia~alik~e------- 662 (1636)
T KOG3616|consen 601 DTGQDEKAAELKE--------SDGDG-LAAIQLYIKAGKPAKAARAALN--DEELLADEEILEHIAAALIKGE------- 662 (1636)
T ss_pred hcCchhhhhhhcc--------ccCcc-HHHHHHHHHcCCchHHHHhhcC--HHHhhccHHHHHHHHHHHHhhH-------
Confidence 5555555543321 11111 2345666777776666544311 1111122222222222222222
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC------------CC-hhH-HHHHHHHHHHcCChHHHHH
Q 002790 294 IHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE------------KN-IVS-WNALITSYAEAGLCDEAVE 359 (881)
Q Consensus 294 i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~------------~~-~~~-~~~li~~~~~~g~~~~A~~ 359 (881)
.|....+.|-+..++++|.+.|++-.. |. +++ -......+.+.|+++.|..
T Consensus 663 ---------------lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daain 727 (1636)
T KOG3616|consen 663 ---------------LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAIN 727 (1636)
T ss_pred ---------------HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHH
Confidence 222233334444444445444443211 11 111 1112233445566666655
Q ss_pred HHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 002790 360 VFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVV 439 (881)
Q Consensus 360 l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 439 (881)
.|-+... .--.+.+......|.+|+.+++.++.+. .-...|..+.+-|++.|+++.|.++|-+.
T Consensus 728 hfiea~~-------------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 728 HFIEANC-------------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred HHHHhhh-------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 5543221 1123445566777888888888777653 33345666777788888888888877542
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002790 440 RVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV 517 (881)
Q Consensus 440 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 517 (881)
..++.-|.+|.+.|++++|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 792 --------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~---- 855 (1636)
T KOG3616|consen 792 --------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK---- 855 (1636)
T ss_pred --------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH----
Confidence 23456688888888888888888877665 44556666666677788888877765432 4543
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHK 595 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g 595 (881)
.|..|-+.|..++.+++..+-. |+ ..+...+..-|...|++.+|.+.|-+.+ -|.+-++.|...+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHH------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhC------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhh
Confidence 3556777777777777765432 33 3455566667777788888877776553 3455555666666
Q ss_pred CHHHHHHHHH
Q 002790 596 NTDVAEAMAS 605 (881)
Q Consensus 596 ~~~~A~~~~~ 605 (881)
-+++|.++.+
T Consensus 923 lw~dayriak 932 (1636)
T KOG3616|consen 923 LWEDAYRIAK 932 (1636)
T ss_pred hHHHHHHHHh
Confidence 6666655443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-07 Score=100.56 Aligned_cols=211 Identities=13% Similarity=0.098 Sum_probs=151.7
Q ss_pred chHHHHHHHHHHHHHc-CCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHH
Q 002790 426 AALNIGREIHGHVVRV-SMNKN--ILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALA 499 (881)
Q Consensus 426 g~~~~a~~i~~~~~~~-g~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~ 499 (881)
+..+.+..-+.+++.. ...|+ ...+..+...|.+.|+.++|...|++..+ | +...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666643 22222 45677778889999999999999998864 2 67899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--C
Q 002790 500 TFEEMIEAGFKPD-GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--P 576 (881)
Q Consensus 500 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~ 576 (881)
.|++..+. .|+ ..++..+..++...|++++|.+.++... ...|+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999985 454 5578888888999999999999999998 34665432222233345678899999999665 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 577 MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF-------GLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 577 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..|+...| .+. ....|+...+ ..++.+. +..|..+..|..++.+|.+.|++++|+..|++..+.+
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 222 2234444333 2333333 3455667899999999999999999999999888754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-07 Score=94.38 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=38.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAG 563 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g 563 (881)
+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+. ...+...+..++..+...|
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALG 217 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHh
Confidence 3344444444444444444444331 112233444444444455555555555544422 1122333444444444555
Q ss_pred CHHHHHHHHHh
Q 002790 564 LLQEASDIVKN 574 (881)
Q Consensus 564 ~~~eA~~l~~~ 574 (881)
+.++|..+.+.
T Consensus 218 ~~~~a~~~~~~ 228 (234)
T TIGR02521 218 DVAAAQRYGAQ 228 (234)
T ss_pred hHHHHHHHHHH
Confidence 55555544433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-06 Score=86.03 Aligned_cols=442 Identities=12% Similarity=0.121 Sum_probs=202.5
Q ss_pred HHcCCChhHHHHHHhhCCC-C--CCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcc
Q 002790 73 YARFGRLFDARNVFETAPF-D--CKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFR 149 (881)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 149 (881)
+....++..|+.+++--.. + -..++..| +..++...|++++|+..++-..+.. .|+......|.-...-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445677888887765433 1 11233334 4456667889999998888877654 333333333322222334444
Q ss_pred cccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhH
Q 002790 150 FRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRME 229 (881)
Q Consensus 150 ~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 229 (881)
+| +++-.. .+.++-....|.+.-.+.++-++...+-+.+.... ..--+|.+.....-.+++|.+++.+..
T Consensus 109 eA----~~~~~k-----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EA----KSIAEK-----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HH----HHHHhh-----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 333221 12233333444455556666666555544443211 222233333333345778888888877
Q ss_pred HcCCCCCHhHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cccchhHHHHHHHHHhcCCCCc
Q 002790 230 LEGLEPNFVTWTS-LLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCAD--LAADHMGKVIHGFVIKGGFEDY 306 (881)
Q Consensus 230 ~~g~~pd~~ty~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~~~~~~~g~~~~ 306 (881)
.. .|+-...|. +.-+|.+..-++-+.++++--.+. -||+ |+..=+.+|.. .-.-..+++-.+.+.+.+-..
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 55 355444443 334566777777777766655543 1332 12222222221 111111111111111111000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHccCCCCCCCChhhHH
Q 002790 307 VFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEA-----GLCDEAVEVFSQLEKLDGGSMERPNVISWS 381 (881)
Q Consensus 307 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~ 381 (881)
-..+.-++++ ..-+.|++++-.+.+.- | .+--
T Consensus 253 -----------------------------------~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I------P--EARl 289 (557)
T KOG3785|consen 253 -----------------------------------YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI------P--EARL 289 (557)
T ss_pred -----------------------------------chhHHHHHHcCeEEEeCCccHHHhchHHHhhC------h--Hhhh
Confidence 0111222222 12344555444443311 1 1222
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHH-----HHhhhchHHHHHHHHHHHHHcCCCCch-hHHHHHHH
Q 002790 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLS-----VCAESAALNIGREIHGHVVRVSMNKNI-LVQNGLLN 455 (881)
Q Consensus 382 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-----~~~~~g~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~ 455 (881)
.|+--|.+.+++.+|..+.+++.- ..|.......+.. -..+...+..|.+.|+.+-+.+...|. .--.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 334445666666666666666642 2333333222222 222334556666666666555554443 22334444
Q ss_pred HHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEK----KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV-AVLSACSHAGLVN 530 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~ 530 (881)
++.-..++++....++.+.. .|...+| +..+++..|.+.+|+++|-+.....++ |..+|. .|.++|.+.+.++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 55555556655555555442 1333332 455566666666666666554433222 233333 3334455555566
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH
Q 002790 531 EGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVW 584 (881)
Q Consensus 531 ~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~ 584 (881)
.|+.++-++. -..+ ......+.+-|.+++.+--|.+.|+.+ ...|++.-|
T Consensus 446 lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 5555544332 1111 122233344455555555555555555 334554444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-07 Score=108.55 Aligned_cols=179 Identities=7% Similarity=-0.077 Sum_probs=143.7
Q ss_pred cCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 002790 460 CGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIF 536 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~ 536 (881)
.+++++|...+++..+. +...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35588999999887643 67788888888999999999999999999874 334557888888999999999999999
Q ss_pred HHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 537 DMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMP--MEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 537 ~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~--~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
++.. .+.|+. ..+..+...+...|++++|.+.+++.. ..|+ ...+..+...+...|+.++|...++++....|
T Consensus 396 ~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 396 NECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9998 456763 333445556777999999999998872 2354 44566677778899999999999999888888
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 613 ETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+......+...|...| ++|...++++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 88888888888888888 5888888877654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-07 Score=101.27 Aligned_cols=95 Identities=13% Similarity=0.260 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhc-----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREF-----RIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM--------PMEPN 580 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m--------~~~pd 580 (881)
+++.+...|.+.|++++|.++++++.... +..+. -..++.|...|.+.+++.+|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 55555555555666666665555554321 11222 234555666666666666666666543 22355
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 581 A-YVWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 581 ~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
. .+|..|...|...|+++.|+++.+.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 4788888889999999999988887763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-05 Score=91.14 Aligned_cols=282 Identities=11% Similarity=0.098 Sum_probs=169.0
Q ss_pred HHHHhcCChHHHHHHHhhcCC--CCeeh-HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHH-HHHHHHhc----
Q 002790 179 GMYAKMGQMSDSFKLFDKVRV--KNYIS-WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTS-LLSSHARC---- 250 (881)
Q Consensus 179 ~~~~~~g~~~~A~~l~~~m~~--~~~~~-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~-li~~~~~~---- 250 (881)
..+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..++..+.+. .|+...|-. +..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 455778999999999977543 34444 445567788999999999999999988 466666544 44444222
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc-chhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002790 251 -GRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAA-DHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328 (881)
Q Consensus 251 -g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 328 (881)
.+.+...++|+++...- |.......+.-.+..... ...+...+....+.|+|+ +++.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677788888887654 333333222212222111 223445556666777665 55666666765555555555
Q ss_pred HHhhccC------------------CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCC-hhhHHHHHHHH
Q 002790 329 LFSEIEE------------------KNIV--SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPN-VISWSAVIGAF 387 (881)
Q Consensus 329 ~~~~m~~------------------~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~-~~~y~~li~~~ 387 (881)
++..... |... ++.-+...|...|++++|++.+++.+++. |+ +..|..-...|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~Karil 238 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHH
Confidence 5554321 1221 23444556667777777777777777643 33 45666667777
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHH--------HHHHHHHHh
Q 002790 388 ASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQ--------NGLLNMYMK 459 (881)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~--------~~Li~~y~~ 459 (881)
-+.|++.+|.+.++..+... .-|...=+-....+.+.|+.++|.+++....+.+..|..... .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776554 334444455555666677777777777766665543222111 223456666
Q ss_pred cCCHHHHHHHHHhcc
Q 002790 460 CGCLEEGHLVFEQIE 474 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~ 474 (881)
.|++..|.+-|..+.
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-08 Score=97.06 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 002790 342 NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSV 421 (881)
Q Consensus 342 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 421 (881)
+.+.++|.+.|.+.+|.+.|+.-.+ ..|-+.||-.|-..|.+..++..|+.+|.+-.+. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh------
Confidence 3455566666666666666655544 3555556666666666666666666666555433 3444443
Q ss_pred HhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHH
Q 002790 422 CAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENAL 498 (881)
Q Consensus 422 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 498 (881)
.......+-..++.++|.++++...+. ++.....+..+|.-.++++-|+
T Consensus 293 ----------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 293 ----------------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred ----------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 122233344445555666665555432 4444444555566666677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPME 578 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~ 578 (881)
..++++++.|+. +...|..+.-+|...+++|-++.-|++.... .-.|+
T Consensus 345 ryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~------------------------------ 392 (478)
T KOG1129|consen 345 RYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPG------------------------------ 392 (478)
T ss_pred HHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcc------------------------------
Confidence 777777766643 4455666666666666666666666555421 11122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 579 PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 579 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.-..+|-.|.......||+..|.+.++-++..+|++...++.|+-.-.+.|++++|..+++..+...
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 1234666666667778888888888888888888889999999999999999999999988887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=94.39 Aligned_cols=190 Identities=12% Similarity=0.125 Sum_probs=159.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcc
Q 002790 450 QNGLLNMYMKCGCLEEGHLVFEQIE--KKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV-AVLSACSHA 526 (881)
Q Consensus 450 ~~~Li~~y~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~ 526 (881)
-+.+..+|.+.|.+.+|.+.|+... .+-+.||-.|-..|.+..++..|+.++.+-.+. .|-.+||. ...+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3567889999999999999998765 357889999999999999999999999998876 67777664 455677788
Q ss_pred CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002790 527 GLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM---PMEPNAYVWGTLLNSCRMHKNTDVAEA 602 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m---~~~pd~~~~~~Ll~~~~~~g~~~~A~~ 602 (881)
++.++|.++++...+ ..| +++...++...|.-.++.+-|+.+++++ +.. ++..|+.+.-+|.-.+.+|.++-
T Consensus 304 ~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 999999999999984 344 5788888899999999999999999876 443 67788888888999999999999
Q ss_pred HHHHHhhc--CCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 603 MASQIFGL--ITE-TTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 603 ~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
-++++... +|+ -..+|+.++.+..-.|++.-|.+.|+-....+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999876 343 45789999999999999999999999877654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00012 Score=80.90 Aligned_cols=340 Identities=14% Similarity=0.102 Sum_probs=180.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCCh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRL 253 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~ 253 (881)
-.+.+..+...|+-++|-++- +.+-.. -+.|+.|.+.|.+..|.+....=.. +..|......+..++.+..-+
T Consensus 592 k~sy~q~l~dt~qd~ka~elk----~sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~ely 664 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELK----ESDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELY 664 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhc----cccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHH
Confidence 334445555556666555431 111111 2346667777777776655422111 134455555555555555556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHhh
Q 002790 254 EETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVK-NALICVYGKHGDVKVAQNLFSE 332 (881)
Q Consensus 254 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~~~~~g~~~~A~~~~~~ 332 (881)
++|-.+|+++..- ...+..+.+...+..|.++-+. .+|..+.+. ......+...|+++.|...|-+
T Consensus 665 dkagdlfeki~d~---------dkale~fkkgdaf~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 6666666554321 1112222222223333332221 122222211 1223344455666666655544
Q ss_pred ccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCch
Q 002790 333 IEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANS 412 (881)
Q Consensus 333 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 412 (881)
.. ..-..|.+....+.|.+|+.+++.++.+. .-..-|..+.+.|...|+++.|.++|-+.-
T Consensus 732 a~-----~~~kaieaai~akew~kai~ildniqdqk------~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------- 792 (1636)
T KOG3616|consen 732 AN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK------TASGYYGEIADHYANKGDFEIAEELFTEAD-------- 792 (1636)
T ss_pred hh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc------cccccchHHHHHhccchhHHHHHHHHHhcc--------
Confidence 21 11122444556677777777777776643 223346666677777777777777775431
Q ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 002790 413 VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNG 492 (881)
Q Consensus 413 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 492 (881)
.++-.|..|.+.|+++.|.++-.+. .|.+..+..|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|
T Consensus 793 -~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~ 864 (1636)
T KOG3616|consen 793 -LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHG 864 (1636)
T ss_pred -hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhC
Confidence 2344566677777777776665443 233444555555555666777777777777777666543 56667777
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 002790 493 LGENALATFEEMIEAGFKPDG--VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASD 570 (881)
Q Consensus 493 ~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 570 (881)
..++.+++.++- .|+. .|...+..-+-..|++..|...|-+.. -|.+-+++|...+.+++|.+
T Consensus 865 ~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 865 LDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred cchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHH
Confidence 777776666543 2232 355555556666677777766665443 23445556666666666666
Q ss_pred HHHhC
Q 002790 571 IVKNM 575 (881)
Q Consensus 571 l~~~m 575 (881)
+-+.-
T Consensus 930 iakte 934 (1636)
T KOG3616|consen 930 IAKTE 934 (1636)
T ss_pred HHhcc
Confidence 65543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-05 Score=78.55 Aligned_cols=378 Identities=16% Similarity=0.140 Sum_probs=220.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHH---HHHhCCChhHHHHHHHHhHHcCCCCCHhHHH-HHHHHHH
Q 002790 173 IVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFS---GFALNFDCDGALELFKRMELEGLEPNFVTWT-SLLSSHA 248 (881)
Q Consensus 173 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~-~li~~~~ 248 (881)
-.-.|-..+...|++.+|+.-|....+-|+..|.++.+ .|...|+...|+.=|.+..+. +||-..-. .-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 33445566677899999999999988888888877764 688899999999999998876 78854321 1224467
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002790 249 RCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQN 328 (881)
Q Consensus 249 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 328 (881)
++|.++.|..=|+...+.. |+..+- ..+..+. ..+. ........+..+.-.|+...|+.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl----------~~~~------e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKL----------ALIQ------EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHH----------HhHH------HHHHHHHHHHHHhcCCchhhHHH
Confidence 9999999999999988764 221110 0111111 0000 01122333444556677777777
Q ss_pred HHhhccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 002790 329 LFSEIEE---KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL 405 (881)
Q Consensus 329 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 405 (881)
....+.+ -|...+..-..+|...|.+..|+.-++...+.. ..+..++--+-..+...|+.+.++...++-++
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 7777665 355566666677777777777777666665543 34455555566666677777777766666654
Q ss_pred CCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 002790 406 AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMI 485 (881)
Q Consensus 406 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li 485 (881)
. .||...+-. .| .++.+..+.++.|.
T Consensus 252 l--dpdHK~Cf~--------------------------------------~Y---KklkKv~K~les~e----------- 277 (504)
T KOG0624|consen 252 L--DPDHKLCFP--------------------------------------FY---KKLKKVVKSLESAE----------- 277 (504)
T ss_pred c--CcchhhHHH--------------------------------------HH---HHHHHHHHHHHHHH-----------
Confidence 3 444322110 01 11111222222221
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGV---AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRA 562 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~ 562 (881)
.....+++.++++..+...+.......+ .+..+-.++...|++.+|++...+.. .+.|+
T Consensus 278 -~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~-------------- 339 (504)
T KOG0624|consen 278 -QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPD-------------- 339 (504)
T ss_pred -HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCch--------------
Confidence 2234566677777777766653221122 33344455566677777777777776 45555
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 563 GLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 563 g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
|+.++.--..+|....+++.|+.-|+.+.+.++.+..+ +.| .+.|.++.+..-
T Consensus 340 -----------------dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~---------reG-le~Akrlkkqs~ 392 (504)
T KOG0624|consen 340 -----------------DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA---------REG-LERAKRLKKQSG 392 (504)
T ss_pred -----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH---------HHH-HHHHHHHHHHhc
Confidence 34455555556666677888888888888888877543 222 234444433332
Q ss_pred hCCCccCCcceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcc
Q 002790 643 TKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDND 698 (881)
Q Consensus 643 ~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~ 698 (881)
++..-++ -|-......++|..++.++- ..|.|||.
T Consensus 393 kRDYYKI----------------LGVkRnAsKqEI~KAYRKlA-----qkWHPDNF 427 (504)
T KOG0624|consen 393 KRDYYKI----------------LGVKRNASKQEITKAYRKLA-----QKWHPDNF 427 (504)
T ss_pred cchHHHH----------------hhhcccccHHHHHHHHHHHH-----HhcCCccc
Confidence 2222111 13344445567776666533 45899984
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00013 Score=80.53 Aligned_cols=442 Identities=12% Similarity=0.058 Sum_probs=251.5
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCeehHHHHHHHHHhCCChhH
Q 002790 144 FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV---KNYISWNMMFSGFALNFDCDG 220 (881)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~~y~~li~~~~~~g~~~~ 220 (881)
..+.+..+++.+++++. +.+-...+....--.+...|+-++|......-.. ++.+.|-.+.-.+-...++++
T Consensus 19 E~kQYkkgLK~~~~iL~-----k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-----KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHhHHHHHHHHHH-----hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 44555556333333333 2333334444444445667888888887775443 455777777777777788888
Q ss_pred HHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHh
Q 002790 221 ALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIK 300 (881)
Q Consensus 221 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 300 (881)
|.+.|......+ +-|...|.-+--.-++.|+++.....-.+..+..
T Consensus 94 aiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------------------------------- 139 (700)
T KOG1156|consen 94 AIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------------------------------- 139 (700)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---------------------------------
Confidence 888888877663 3344456655555566666666665555554431
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC-----CChhHHHH------HHHHHHHcCChHHHHHHHHHHHHccC
Q 002790 301 GGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE-----KNIVSWNA------LITSYAEAGLCDEAVEVFSQLEKLDG 369 (881)
Q Consensus 301 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~------li~~~~~~g~~~~A~~l~~~m~~~~~ 369 (881)
+.....|..+..++--.|+...|..++++..+ ++...+.. ......+.|..++|.+.+..-...-
T Consensus 140 ---~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i- 215 (700)
T KOG1156|consen 140 ---PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI- 215 (700)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-
Confidence 12233444455555556666666666665542 33332222 2344567788888888777655422
Q ss_pred CCCCCCChhh-HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHh-hh-chHHHHHHHHHHHHHcCC---
Q 002790 370 GSMERPNVIS-WSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCA-ES-AALNIGREIHGHVVRVSM--- 443 (881)
Q Consensus 370 ~~~~~p~~~~-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~-g~~~~a~~i~~~~~~~g~--- 443 (881)
-|... -.+-...+.+.+++++|..++..++.. .||..-|...+..+. +. +..+....++....+.-.
T Consensus 216 -----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 216 -----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred -----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 22222 234456788999999999999999876 788877776666554 33 333333355555443211
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cC----------
Q 002790 444 NKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK-DLITWNSMISGYGMNGLGENALATFEEMIE----AG---------- 508 (881)
Q Consensus 444 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g---------- 508 (881)
.|--...+. + .-..-.+...+++..+.++ =+.++..+...|-.-...+-..++...+.. .|
T Consensus 289 ~p~Rlplsv-l---~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 CPRRLPLSV-L---NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cchhccHHH-h---CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 111111111 1 0111122222333333222 122333433333222222211111111111 11
Q ss_pred CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCHHH
Q 002790 509 FKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP-M-EPNAYV 583 (881)
Q Consensus 509 ~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~-~-~pd~~~ 583 (881)
-+|... |+.-+...+-+.|+++.|..+++... +-.|+ ++.|-.-...+..+|.+++|..++++.. . .||...
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 145544 55667778889999999999999988 66787 6778777889999999999999999883 2 244443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------Cc-chHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITE------TT-GSYM--LLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~------~~-~~~~--~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
-.--..-..+.++.++|.+++..-...... +. -.|+ -=+.+|.+.|++-+|++-|..+.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 333444456788999999888776543211 11 1222 33667888899988887665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00013 Score=83.87 Aligned_cols=567 Identities=14% Similarity=0.047 Sum_probs=286.1
Q ss_pred HHHHHHHHHhCCCCC-hHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 48 KQVHNQLIVTGANAS-AFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
..++..+....+.|+ ...|..|-..|+..-+...|.+.|+..-+-.+.+..++......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 556666666666666 4578888888888888999999998877666678899999999999999999999884333222
Q ss_pred CCCCC-cch--HHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCee
Q 002790 127 GVLGD-GFT--FPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYI 203 (881)
Q Consensus 127 g~~p~-~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 203 (881)
.|- ... |..+--.+-..++...+ ..-++...+. -+.|...|..|..+|.++|++..|.++|.+...-++.
T Consensus 556 --a~a~~~k~nW~~rG~yyLea~n~h~a----V~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 556 --APAFACKENWVQRGPYYLEAHNLHGA----VCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred --chHHHHHhhhhhccccccCccchhhH----HHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 111 111 22222224455666666 3333333332 2346778999999999999999999999877654443
Q ss_pred hHHH---HHHHHHhCCChhHHHHHHHHhHHc------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-------cC
Q 002790 204 SWNM---MFSGFALNFDCDGALELFKRMELE------GLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK-------RG 267 (881)
Q Consensus 204 ~y~~---li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-------~g 267 (881)
++.. .....+..|.+.+|+..+...... +..--..++-.+...+.-.|-..+|...++.-.+ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3222 223456788899999888876532 1111122233333333333434444444433222 11
Q ss_pred CCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH---H---HHHHHHhhccC--CChh
Q 002790 268 IEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDV---K---VAQNLFSEIEE--KNIV 339 (881)
Q Consensus 268 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~---~---~A~~~~~~m~~--~~~~ 339 (881)
..-+...+-.+-.+|. ++.... .. .|+......|..-.-+.+.. + -+.+.+-.-.+ .+..
T Consensus 709 ~~~~~~~Wi~asdac~----------~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACY----------IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY 776 (1238)
T ss_pred hhhhHHHHHHHhHHHH----------HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc
Confidence 1111111111111111 111111 00 11111111111101111111 0 00000000000 1233
Q ss_pred HHHHHHHHHHH----c----CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc
Q 002790 340 SWNALITSYAE----A----GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN 411 (881)
Q Consensus 340 ~~~~li~~~~~----~----g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 411 (881)
+|..++..|.+ . .+...|+..+.+..+.. ..+..+||.|--. ...|.+.-|...|-+-.... +-+
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-----ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-----ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-----hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 44444444333 1 12234556666555533 3444555554333 44455555555554443321 333
Q ss_pred hhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----c---CCHHHHHH
Q 002790 412 SVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE-----K---KDLITWNS 483 (881)
Q Consensus 412 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~---~d~~~~~~ 483 (881)
..+|..+--.|....+++.|...+........ .+...|-.........|+.-++..+|..-. + ++..-|-.
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 44555555555666666666666665554321 122333222223334555556666655411 1 12333333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHH-
Q 002790 484 MISGYGMNGLGENALATFEEMIE---------AGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYA- 553 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~- 553 (881)
.......+|+.++-+...+++.. .|.+-+...|.......-+.+.+.+|..+..+...-...+-+...|+
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33333444444433333222211 12333445666666666666766666666555432111122333344
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHH
Q 002790 554 ---CMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT---GSYMLLSNIYAA 627 (881)
Q Consensus 554 ---~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 627 (881)
.....++..|.++.|..-+.....+.|..+..+-+.. .-.++++++...|+++..+...+. .....++.....
T Consensus 1009 ak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 3345566677777777666655544455444444443 445678888888888877733332 334445555566
Q ss_pred cCCHHHHHHHHHHHH
Q 002790 628 SGRWEDAAKVRISAK 642 (881)
Q Consensus 628 ~g~~~eA~~~~~~m~ 642 (881)
.+.-+.|...+-+.+
T Consensus 1088 ~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVK 1102 (1238)
T ss_pred cccchHHHHHHHHHH
Confidence 666777766655444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-07 Score=87.94 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPD-GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVD 557 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~ 557 (881)
+...|.-+|...|+...|.+-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++.. .+.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 4555677888889999999999998886 444 4488888888899999999999999888 56776 678888899
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHH
Q 002790 558 LLGRAGLLQEASDIVKNMPMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWED 633 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 633 (881)
.+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|..+.....+.....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988844443 35788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002790 634 AAKVRISAKTKGL 646 (881)
Q Consensus 634 A~~~~~~m~~~g~ 646 (881)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00012 Score=76.32 Aligned_cols=302 Identities=11% Similarity=-0.010 Sum_probs=201.1
Q ss_pred HHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhH----HHHHHHHHhh
Q 002790 349 AEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVT----ISGLLSVCAE 424 (881)
Q Consensus 349 ~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~ 424 (881)
+-.++...|...+-.+..... .+-|+.....+.+.+...|+.++|...|++.+.. .|+..+ |..+ +..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~---lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~ 278 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTT---LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQ 278 (564)
T ss_pred HHhcccchhhhHHHHHHhhcc---CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHh
Confidence 334555555555554444332 4566777778888888888888888888877643 343322 2222 245
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHH
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATF 501 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~ 501 (881)
.|+.+....+...+....- .+...|-.-.......++++.|..+-++..+. ++..|-.-...+...|++++|.-.|
T Consensus 279 eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred ccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 5666666666555543220 01111111122334556788888877776544 4444544456677889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCC
Q 002790 502 EEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV-DLLG-RAGLLQEASDIVKNM-PME 578 (881)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~eA~~l~~~m-~~~ 578 (881)
+..+... +-+..+|..|+.+|...|++.+|.-.-....+. +..+..+...+. ..+. .-..-++|.+++++. .++
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 9988752 345669999999999999999998877766632 223344544442 2232 233457889998876 777
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCccCCcceeEEE
Q 002790 579 PNAY-VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKKVAGQSWIEV 657 (881)
Q Consensus 579 pd~~-~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~~~~~s~~~~ 657 (881)
|+-. ..+.+...|...|..+.++.++++.+...|++ ...+.|++.+.....+.+|++.|......
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~------------- 500 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ------------- 500 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------------
Confidence 8743 66777777999999999999999999887764 58899999999999999999999966553
Q ss_pred cCeEEEEeeccCCCcchHHHHHHHHHHHHHHH
Q 002790 658 KRKIHMFSSGNSLQSDLKNVCEVLEELALQME 689 (881)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 689 (881)
.|+.+...+-++.+-++|+
T Consensus 501 -------------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 501 -------------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -------------CccchHHHHHHHHHHhccC
Confidence 2555666666666666665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-05 Score=78.32 Aligned_cols=309 Identities=12% Similarity=0.092 Sum_probs=203.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH-H
Q 002790 306 YVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALI---TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW-S 381 (881)
Q Consensus 306 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y-~ 381 (881)
++.-.-.|.+.+...|++..|+..|....+-|...|.++. ..|...|+...|+.-+.+..+ .+||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle------lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE------LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh------cCccHHHHHH
Confidence 3333445667777889999999999999887777776664 468888999999988888887 45664322 1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 002790 382 AVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCG 461 (881)
Q Consensus 382 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 461 (881)
.--..+.+.|.+++|..=|+..++. .|+..+ ...+..+.-..++-..+ ...+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCC
Confidence 2235678899999999999998876 343221 11222222111111111 12233445567
Q ss_pred CHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 002790 462 CLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 462 ~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
+...|+.....+.+. |...|..-..+|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777766542 56666666777777777777776666555432 33344555555666677777777777776
Q ss_pred HHHhcCCCCChh----HHHHH---H------HHHHHcCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHHcCCHHH
Q 002790 539 MVREFRIEPQME----HYACM---V------DLLGRAGLLQEASDIVKNM-PMEPNA--Y---VWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 539 m~~~~~~~p~~~----~~~~l---i------~~~~~~g~~~eA~~l~~~m-~~~pd~--~---~~~~Ll~~~~~~g~~~~ 599 (881)
.. .+.||.. .|..| . ......+++.++++-.+.. ..+|.. + .+..+-.+++..+++.+
T Consensus 249 CL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 249 CL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 66 5566632 12211 1 1233456666666655543 444542 2 33444555678899999
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
|++.+.++++.+|+|..++.--+.+|.-..++++|+.-|++..+-+
T Consensus 326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999887743
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.0011 Score=76.28 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (881)
.+.+|..+..+-...|.+.+|.+-|-+. .|+..|..+++...+.|.+++-...+....+..-.|... ..|+-+|.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 4567888888888888888888777543 356678888888888888888888877776665555544 456777777
Q ss_pred cCCHHHHHHHHH------------HHH-----Hhc-CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---------
Q 002790 526 AGLVNEGRRIFD------------MMV-----REF-RIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPME--------- 578 (881)
Q Consensus 526 ~g~~~~A~~l~~------------~m~-----~~~-~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~--------- 578 (881)
.+++.+-.++.. +.- +.. -+-.++..|..|...+...|.++.|.+--++....
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 777665443321 000 000 00112334555556666666666665555444200
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 002790 579 ------------------PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 579 ------------------pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
....-..-|+.-|...|-+++.+.+++..+.++......|.-|+..|++-
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11223334556666777788888888888888777788888888877765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.3e-05 Score=82.06 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=102.9
Q ss_pred HHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--ccCC
Q 002790 70 LSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACK--FMGS 147 (881)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~ 147 (881)
++.+.+.|++++|.+..+.+....|.+...+..=+-++.+.+.|++|+.+.+.-... ..+. .| .+=++|| +.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~-~~-~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVIN-SF-FFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcc-hh-hHHHHHHHHHccc
Confidence 556677788888888888887766667777777777788888888888555432211 1111 11 0234443 6677
Q ss_pred cccccchHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHh-CCChhHHHHHH
Q 002790 148 FRFRFSFGQIVHNHVLQMGFQGNVH-IVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFAL-NFDCDGALELF 225 (881)
Q Consensus 148 ~~~a~~~~~~~~~~m~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~-~g~~~~A~~l~ 225 (881)
.++| ...+. |..++.. +...-...+-+.|++++|..+|+.+.+.+...+...+.+-+- .+-.-.+ +
T Consensus 95 ~Dea----lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~-- 162 (652)
T KOG2376|consen 95 LDEA----LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-Q-- 162 (652)
T ss_pred HHHH----HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-H--
Confidence 7777 54444 4443332 444444556677888888888888876666665555443211 1111111 1
Q ss_pred HHhHHcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHH
Q 002790 226 KRMELEGLEPNFVTWTSLL---SSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 226 ~~m~~~g~~pd~~ty~~li---~~~~~~g~~~~A~~l~~~m~ 264 (881)
.|......| ..||..+. ..++..|++.+|+++++...
T Consensus 163 -~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 163 -LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred -HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 122222233 22444433 34567788888888888773
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-05 Score=89.68 Aligned_cols=298 Identities=15% Similarity=0.114 Sum_probs=160.0
Q ss_pred HHHHhcCCHHHHHHHHhhccC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH-HHHHHHHHHC
Q 002790 315 CVYGKHGDVKVAQNLFSEIEE--KNIV-SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW-SAVIGAFASN 390 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y-~~li~~~~~~ 390 (881)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN------PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHhhh
Confidence 455788999999999988665 4544 44566778889999999999999999865 455544 4444444222
Q ss_pred -----CChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 002790 391 -----GRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL-NIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLE 464 (881)
Q Consensus 391 -----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 464 (881)
...+...++|+++... -|.......+.-.+.....+ ..+..++..+.+.|+++ +++.|-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 2467778888888665 35444443333223332233 34556666666777543 4455555555333333
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002790 465 EGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVRE 542 (881)
Q Consensus 465 ~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~ 542 (881)
-..+++..... .....+.....- ....-.|... ++.-+...|...|++++|+++.++.+
T Consensus 161 ~i~~l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-- 221 (517)
T PF12569_consen 161 IIESLVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-- 221 (517)
T ss_pred HHHHHHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence 22222222110 000000000000 0000123321 33444445555666666666666555
Q ss_pred cCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCC---
Q 002790 543 FRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI--TET--- 614 (881)
Q Consensus 543 ~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~--p~~--- 614 (881)
...|+ +..|..-...|-+.|++++|.+.++.. ... .|-..-+-....+.+.|+.++|+.++..-...+ |..
T Consensus 222 -~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 222 -EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred -hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 23454 455555666666666666666666555 222 233333333444556666666666665544332 111
Q ss_pred ----cchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 615 ----TGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 615 ----~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.....-.+.+|.+.|++..|++.|....+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12233567788888888888887766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-05 Score=84.77 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=41.0
Q ss_pred ChHHHHHHHH--HHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 002790 62 SAFLAARVLS--IYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMR 124 (881)
Q Consensus 62 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 124 (881)
|..|-..+++ .|..-|+.+.|.+-.+.+++ -..|..|.+.+.+..+.+-|.-.+-.|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-----~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-----DSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-----hHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 3334444433 45667888888887777754 6789999999988888888777776664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-06 Score=86.65 Aligned_cols=164 Identities=10% Similarity=-0.048 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA 522 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 522 (881)
+...|+.+...|...|++++|...|++..+ | +...|..+...+...|++++|++.|++..+. .|+..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 455666677777777777777777777643 2 4567777777888888888888888888875 4544322222222
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHHc
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQE--ASDIVKNM-PME----P-NAYVWGTLLNSCRMH 594 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e--A~~l~~~m-~~~----p-d~~~~~~Ll~~~~~~ 594 (881)
+...++.++|...+++... ...|+...+ .+. ....|+..+ +.+.+.+. ... | ....|..+...+.+.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE--KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHh--hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 3456678888888866542 223332222 222 233454433 33333221 111 2 234788889999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCcc
Q 002790 595 KNTDVAEAMASQIFGLITETTG 616 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~ 616 (881)
|++++|+..|+++.+.+|++..
T Consensus 250 g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCHHHHHHHHHHHHHhCCchHH
Confidence 9999999999999999876543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-05 Score=81.66 Aligned_cols=415 Identities=11% Similarity=0.074 Sum_probs=236.3
Q ss_pred HHHhcCChHHHHHHHhhc---CCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHh-HHHHHHHHHHhcCChHH
Q 002790 180 MYAKMGQMSDSFKLFDKV---RVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFV-TWTSLLSSHARCGRLEE 255 (881)
Q Consensus 180 ~~~~~g~~~~A~~l~~~m---~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-ty~~li~~~~~~g~~~~ 255 (881)
+.+..|+++.|...|-+. ..+|.+.|..-..+|+..|++++|++=-.+-++. .|+.. .|+-...++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 445678888888888753 3457788888888888888888888776666655 67654 58888888888889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHH-----HHHHHhcCCHHHHHHHH
Q 002790 256 TMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNAL-----ICVYGKHGDVKVAQNLF 330 (881)
Q Consensus 256 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-----i~~~~~~g~~~~A~~~~ 330 (881)
|+.-|.+-.+.. +-+...++-+..+.. .+.+. .....+...+..+ -+.+...-.+..-+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~--------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA--------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh--------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 988887766542 112222333333320 00000 0001111111111 11111111122111111
Q ss_pred hhccCCChhHHHHHHHHHHHcCChHHHHHHHHH-----HHHccC---CCCCCCChhhHHHHHHHHHHCCChHHHHHHHHH
Q 002790 331 SEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQ-----LEKLDG---GSMERPNVISWSAVIGAFASNGRGEEALDLFRK 402 (881)
Q Consensus 331 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~~~---~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~ 402 (881)
...+ .. +..|....+...+.-.+.. +...+. .++..|. .+.. .......+
T Consensus 156 ~~~p----~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~~~~~d 213 (539)
T KOG0548|consen 156 QKNP----TS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGFPIIED 213 (539)
T ss_pred hcCc----Hh----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCCCccch
Confidence 1111 00 1111111111111111110 000000 0111111 0000 00000000
Q ss_pred HHH-CCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH---
Q 002790 403 MQL-AKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDL--- 478 (881)
Q Consensus 403 m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~--- 478 (881)
+.+ ...+--..-...+.++..+..+++.+.+.+...++.. .++.-++....+|...|.+.+....-+...+...
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r 291 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR 291 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence 000 0001111223456666777778888888888877765 5666667777788888887777666655443311
Q ss_pred HHHH-------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCh-h
Q 002790 479 ITWN-------SMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQM-E 550 (881)
Q Consensus 479 ~~~~-------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~-~ 550 (881)
.-|+ .+..+|.+.++++.|+..|.+....-..||.. .+....+++....+... -+.|.. .
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~ 359 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAE 359 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHH
Confidence 1222 23445666788889999998877654444322 12223444444444332 455653 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
-...-...+.+.|++.+|++.|.++ ...| |...|.....+|.+.+++..|+.-++..++++|+....|..-+.++...
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 2223367788999999999999998 3344 5678888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 002790 629 GRWEDAAKVRISAKTKG 645 (881)
Q Consensus 629 g~~~eA~~~~~~m~~~g 645 (881)
.+|++|++.|++..+..
T Consensus 440 k~ydkAleay~eale~d 456 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999776643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=91.53 Aligned_cols=147 Identities=13% Similarity=0.018 Sum_probs=90.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHHcCC
Q 002790 488 YGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEH---YACMVDLLGRAGL 564 (881)
Q Consensus 488 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~---~~~li~~~~~~g~ 564 (881)
+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|. .+..|... ..+++..+...+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchh
Confidence 33456677776666532 234455556666777777777777777776 34444221 1222333323345
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH-HHHHHHHHHH
Q 002790 565 LQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRW-EDAAKVRISA 641 (881)
Q Consensus 565 ~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~eA~~~~~~m 641 (881)
+.+|..+|+++. ..+++.+.+.+..++...|++++|+.+++++.+.+|.++.+...++-+....|+. +.+.+++..+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777777772 2356667777777777888888888888888888888888888888887888877 5566677766
Q ss_pred Hh
Q 002790 642 KT 643 (881)
Q Consensus 642 ~~ 643 (881)
++
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00013 Score=84.07 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=124.8
Q ss_pred HHHHHHHHhccc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 464 EEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 464 ~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
..|...+....+ .+..+||.|.-. ...|++.-|..-|-+-.... +....+|..+...|.+..+++-|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 456677766543 477888887655 66678888887777766552 4556688888888999999999999999887
Q ss_pred HhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH--------
Q 002790 541 REFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-------PMEPNAYVWGTLLNSCRMHKNTDVAEAMA-------- 604 (881)
Q Consensus 541 ~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-------~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~-------- 604 (881)
.+.|+ ...|--..-.....|+.-++..+|..- +.-|+...|..-.......|+.++-+...
T Consensus 878 ---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred ---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 67775 566666655666788888888888762 22355555555544455666655544444
Q ss_pred --HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 605 --SQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 605 --~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
++.....|.....|...+....+.+.+++|.+...+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444558999999999999999999999988877665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0013 Score=71.36 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 002790 393 GEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNK-NILVQNGLLNMYMKCGCLEEGHLVFE 471 (881)
Q Consensus 393 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~ 471 (881)
.+.....+++....-..--..+|...++...+...++.|+.+|.++.+.+..+ ++.+.++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555555555443222223456666777777777778888888887776666 77777777777664 56667777776
Q ss_pred hcccC--C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcC--
Q 002790 472 QIEKK--D-LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLVNEGRRIFDMMVREFR-- 544 (881)
Q Consensus 472 ~m~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~-- 544 (881)
.-.++ | ..--...++-+...++-..|..+|++....++.||.. .|..++.-=+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 54432 3 3333445555566666667777777777665555543 666777666667777777666666553332
Q ss_pred CCCChhHHHHHHHHHHHcCCH
Q 002790 545 IEPQMEHYACMVDLLGRAGLL 565 (881)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~ 565 (881)
..+....-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 222223333444444444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-05 Score=77.26 Aligned_cols=410 Identities=10% Similarity=0.062 Sum_probs=236.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCC---CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHH-HHHHHHh
Q 002790 174 VNELIGMYAKMGQMSDSFKLFDKVRVK---NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTS-LLSSHAR 249 (881)
Q Consensus 174 ~~~Li~~~~~~g~~~~A~~l~~~m~~~---~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~-li~~~~~ 249 (881)
+.+.+-.+.+..++++|.+++..-.++ +......+..+|....++..|-+.++++... .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455555556777888888887765544 3345566667777888888888888888755 565555543 2355667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002790 250 CGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNL 329 (881)
Q Consensus 250 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 329 (881)
.+.+.+|+.+...|.+. |+. ++... ..-....-..+++..+..+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L----------------------~~~~l-----------qLqaAIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PAL----------------------HSRVL-----------QLQAAIKYSEGDLPGSRSL 134 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHH----------------------HHHHH-----------HHHHHHhcccccCcchHHH
Confidence 78888888888777543 110 00000 0000112246777788888
Q ss_pred HhhccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 002790 330 FSEIEE-KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV 408 (881)
Q Consensus 330 ~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (881)
+++... .+..+.+.......+.|++++|.+-|....+-++ ......||.-+. ..+.++.+.|++...++.+.|+
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG----yqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG----YQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC----CCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 888874 4555555555666788999999999998888765 444567776554 4567888999999999888876
Q ss_pred CCchhH----HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHH
Q 002790 409 VANSVT----ISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK-----DLI 479 (881)
Q Consensus 409 ~p~~~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----d~~ 479 (881)
+-.+.. -+-.+++ ...|+ -..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++
T Consensus 210 r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred hcCCccCccceeccCch-hcccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 432210 0000000 00000 00000000 0122333344567889999999999999754 777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI-EPQMEHYACMVDL 558 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~-~p~~~~~~~li~~ 558 (881)
|...+.-. -..+++.+..+-+.-+...+. --..||..++-.||+..-++.|-.++.+-. .... -.+...|+ |+++
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHH
Confidence 77665332 124556666666666665532 335699999999999988888888775432 0000 11233333 3344
Q ss_pred HH-HcCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC----HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHH
Q 002790 559 LG-RAGLLQEASDIVKNMPMEPNAYVWGTLLNS-CRMHKN----TDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWE 632 (881)
Q Consensus 559 ~~-~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~-~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (881)
+. ..-..++|++-+..+...-.......-+.. -.++.+ ...+++-|++.+++-- .+....++.|....++.
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~ 431 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYP 431 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccH
Confidence 43 344667777666554211000111111111 112222 2223344444444421 24556777888899999
Q ss_pred HHHHHHHHHHhC
Q 002790 633 DAAKVRISAKTK 644 (881)
Q Consensus 633 eA~~~~~~m~~~ 644 (881)
.+.+.|..-.+.
T Consensus 432 ~vEk~Fr~Svef 443 (459)
T KOG4340|consen 432 MVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHhh
Confidence 999998866553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=77.35 Aligned_cols=192 Identities=12% Similarity=0.051 Sum_probs=145.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 451 NGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 451 ~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
..|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|+.+.|.+.|++.++.. +-+....|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34566788888888888888887654 45578888888888888888888888888753 233446777777788888
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 528 LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMAS 605 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~ 605 (881)
++++|.+.|++...+-...--..+|..++-+-.++|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888888754222223567888888888888888888888876 33343 4577778888888888888888888
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 606 QIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 606 ~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
......+.+.......+.+-...|+-+.+-++=..+..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88887778888888888888888888887776554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0033 Score=78.91 Aligned_cols=331 Identities=12% Similarity=0.045 Sum_probs=212.7
Q ss_pred HHHHhcCCHHHHHHHHhhccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCC--CCCCh--hhHHHHHHH
Q 002790 315 CVYGKHGDVKVAQNLFSEIEE----KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSM--ERPNV--ISWSAVIGA 386 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~p~~--~~y~~li~~ 386 (881)
......|+++.+...++.+.. .+..........+...|+++++...+......-.... ..+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344557888888888887742 2222233344555678999999999988765321000 01111 112223345
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCch----hHHHHHHHHHhhhchHHHHHHHHHHHHHc----CC-CCchhHHHHHHHHH
Q 002790 387 FASNGRGEEALDLFRKMQLAKVVANS----VTISGLLSVCAESAALNIGREIHGHVVRV----SM-NKNILVQNGLLNMY 457 (881)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y 457 (881)
+...|++++|...+++....--..+. ...+.+...+...|+++.|...+...... |. .........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999987753111121 23344455567789999999998888653 11 11123455667788
Q ss_pred HhcCCHHHHHHHHHhcccC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 002790 458 MKCGCLEEGHLVFEQIEKK-----------DLITWNSMISGYGMNGLGENALATFEEMIEA--GFKPD--GVAFVAVLSA 522 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~-----------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a 522 (881)
...|++++|...+++.... ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999988775421 1223445556677789999999999887653 11222 2344556667
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHY-----ACMVDLLGRAGLLQEASDIVKNMPME--PNA----YVWGTLLNSC 591 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~l~~~m~~~--pd~----~~~~~Ll~~~ 591 (881)
....|+.++|...++....-.........+ ...+..+...|+.++|.+++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999998875321111111111 11234456689999999998776321 111 1234566668
Q ss_pred HHcCCHHHHHHHHHHHhhcC------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 592 RMHKNTDVAEAMASQIFGLI------TETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...|+.++|...++++.... +....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999987651 1223567789999999999999999999988754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00017 Score=79.71 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGF-KPDG--VAFVAVLSA 522 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~~~ll~a 522 (881)
....+...+...|++++|...+++..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344555677777888887777776532 455667777777778888888888877766421 1222 234456667
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHHHcCCHHHHHHH--H-Hh---C-CCCCCHHHHHHHHHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQMEHY-A--CMVDLLGRAGLLQEASDI--V-KN---M-PMEPNAYVWGTLLNSCR 592 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~l--~-~~---m-~~~pd~~~~~~Ll~~~~ 592 (881)
+...|++++|..++++........+..... + .+..-+...|..+.+.+. + .. . ..............++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 777888888888887765221111111111 1 223333344432222222 1 11 1 11111122234555577
Q ss_pred HcCCHHHHHHHHHHHhhcC-C--------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 593 MHKNTDVAEAMASQIFGLI-T--------ETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 593 ~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..|+.+.|..+++.+.... . .........+.++.+.|++++|.+.+......+
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888999998888876542 1 124455677888899999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-06 Score=88.45 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=101.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH----AGLV 529 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~ 529 (881)
...|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 34556677777777776654 45566666777777888888888888887753 333 344445554432 2347
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNT-DVAEAMASQ 606 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~-~~A~~~~~~ 606 (881)
.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++++. ...| |+.+...++..+...|+. +.+.++.++
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 788888888763 33456777788888888888888888887765 3333 345666677766666766 677788888
Q ss_pred HhhcCCCCc
Q 002790 607 IFGLITETT 615 (881)
Q Consensus 607 ~~~~~p~~~ 615 (881)
+....|..+
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0069 Score=75.99 Aligned_cols=263 Identities=12% Similarity=-0.035 Sum_probs=131.9
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCeeh--HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChH
Q 002790 177 LIGMYAKMGQMSDSFKLFDKVRVKNYIS--WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLE 254 (881)
Q Consensus 177 Li~~~~~~g~~~~A~~l~~~m~~~~~~~--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~ 254 (881)
....|...|++.+|.............. .......+...|+.+.+.+.++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444556677776666555544322111 11122334556777777777776632211122222233445556788889
Q ss_pred HHHHHHHHHHHcCC------CCCHHH--HHHHHHHHhccccchhHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCC
Q 002790 255 ETMDLFDMMRKRGI------EVGAEA--IAVVLSVCADLAADHMGKVIHGFVIKGGFEDY----VFVKNALICVYGKHGD 322 (881)
Q Consensus 255 ~A~~l~~~m~~~g~------~p~~~t--~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~Li~~~~~~g~ 322 (881)
++..++....+.-- .+.... ...+-..+...|+.+.+....+.....--..+ ....+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 98888887654311 111111 11111233456677777777766554211111 1233445555667777
Q ss_pred HHHHHHHHhhccC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCC--C-ChhhHHHHHHHHHHC
Q 002790 323 VKVAQNLFSEIEE-------KN--IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMER--P-NVISWSAVIGAFASN 390 (881)
Q Consensus 323 ~~~A~~~~~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~--p-~~~~y~~li~~~~~~ 390 (881)
+++|...+.+... +. ..++..+...+...|++++|...+++........... + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 7777777766542 11 1233444556667777777777776655432100000 1 122334444556666
Q ss_pred CChHHHHHHHHHHHHCC--CCCc--hhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 002790 391 GRGEEALDLFRKMQLAK--VVAN--SVTISGLLSVCAESAALNIGREIHGHVV 439 (881)
Q Consensus 391 g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 439 (881)
|++++|...+++..... ..+. ...+..+.......|+.+.|.+.+....
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776654321 1111 1222223334445566666666555553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00043 Score=77.94 Aligned_cols=251 Identities=10% Similarity=0.118 Sum_probs=129.3
Q ss_pred CCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchH
Q 002790 76 FGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFG 155 (881)
Q Consensus 76 ~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 155 (881)
.|.+++|..+|.+.++ |..|=..|-..|.+++|+++-+.=-+-.. ..||..-..-+-..++++.|+++.
T Consensus 813 LgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 3555666666655544 33333445556777777766554222111 234444444444455555552211
Q ss_pred -------HHHHHHHHHhC--------CCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhH
Q 002790 156 -------QIVHNHVLQMG--------FQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDG 220 (881)
Q Consensus 156 -------~~~~~~m~~~g--------~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~ 220 (881)
.++++.+.+.. -..|...|.---.-+-..|++|.|+.++.... -|-++++..|-.|+.++
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchH
Confidence 12222221110 01223333333333334577777777766543 46667777777777777
Q ss_pred HHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch-----------
Q 002790 221 ALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH----------- 289 (881)
Q Consensus 221 A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------- 289 (881)
|-++-++- -|....-.+.+.|-..|++.+|...|-+.+ +|...|+.|...+--+
T Consensus 957 Aa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 957 AARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred HHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 77776653 344455567888888888888888887654 3444555554333211
Q ss_pred ----hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--------------CChhHHHHHHHHHHHc
Q 002790 290 ----MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--------------KNIVSWNALITSYAEA 351 (881)
Q Consensus 290 ----~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------------~~~~~~~~li~~~~~~ 351 (881)
.+-..+++ .|. -....+..|-+.|.+.+|+++-=+-.+ .|....+--.+.++..
T Consensus 1022 ~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 11122221 111 112345567788888777765322221 2444455555556666
Q ss_pred CChHHHHHHHHHHH
Q 002790 352 GLCDEAVEVFSQLE 365 (881)
Q Consensus 352 g~~~~A~~l~~~m~ 365 (881)
.++++|..++-...
T Consensus 1094 ~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766665443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00016 Score=72.27 Aligned_cols=196 Identities=12% Similarity=0.006 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHH-HHHH
Q 002790 64 FLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLV-IRAC 142 (881)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~ 142 (881)
--+.+++..+.+..++++|++++....+..+.+....+.+..+|....++..|-..++++... .|...-|..- ...+
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 345667777788899999999997766655668888999999999999999999999998765 4544443221 1234
Q ss_pred HccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCChHHHHHHHhhcCC-CCeehHHHHHHHHHhCCChh
Q 002790 143 KFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIG--MYAKMGQMSDSFKLFDKVRV-KNYISWNMMFSGFALNFDCD 219 (881)
Q Consensus 143 ~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~--~~~~~g~~~~A~~l~~~m~~-~~~~~y~~li~~~~~~g~~~ 219 (881)
.+.+.+..| ..+...|.+. ++...-..-+. ..-..+++..++.++++.+. .+..+-+...-..-+.|+++
T Consensus 89 Y~A~i~ADA----LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADA----LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHH----HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHH
Confidence 455556666 5555554332 22111111111 12345888899999999884 55555555555556899999
Q ss_pred HHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002790 220 GALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIE 269 (881)
Q Consensus 220 ~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 269 (881)
+|.+-|+...+-|--.....|+..+ +..+.|++..|++...++.++|++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 9999999887654334455777555 556778999999999999988864
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00039 Score=76.76 Aligned_cols=292 Identities=14% Similarity=0.033 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccC---CChh---HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHH
Q 002790 309 VKNALICVYGKHGDVKVAQNLFSEIEE---KNIV---SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSA 382 (881)
Q Consensus 309 ~~~~Li~~~~~~g~~~~A~~~~~~m~~---~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~ 382 (881)
.+..+...+...|+.+.+...+....+ ++.. ........+...|++++|.+.+++..+.. +.|...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~~a~~~ 82 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-----PRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHH
Confidence 344444455555555555444444321 1111 11122334556677777777777776643 233333332
Q ss_pred HHHHHHH----CCChHHHHHHHHHHHHCCCCCchh-HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 002790 383 VIGAFAS----NGRGEEALDLFRKMQLAKVVANSV-TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMY 457 (881)
Q Consensus 383 li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (881)
...+.. .+..+.+.+.+.. .....|+.. ....+...+...|++++|.+.++...+.. +.+...+..+...|
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 222222 3334444444433 112233322 22334445667777888888887777754 33456667777788
Q ss_pred HhcCCHHHHHHHHHhcccC-----C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHcc
Q 002790 458 MKCGCLEEGHLVFEQIEKK-----D--LITWNSMISGYGMNGLGENALATFEEMIEAGF-KPDGVAF-V--AVLSACSHA 526 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~-----d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~-~--~ll~a~~~~ 526 (881)
...|++++|...+++..+. + ...|..+...+...|++++|..++++...... .+..... . .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 8888888888888776532 2 12355677777888888888888888754321 1111111 1 223333334
Q ss_pred CCHHHHHHH---HHHHHHhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CC---CH----HHHHHHHHH--H
Q 002790 527 GLVNEGRRI---FDMMVREFRI-EPQMEHYACMVDLLGRAGLLQEASDIVKNMPM--EP---NA----YVWGTLLNS--C 591 (881)
Q Consensus 527 g~~~~A~~l---~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~--~p---d~----~~~~~Ll~~--~ 591 (881)
|..+.+.++ ..... ...- ............++...|+.++|..+++.+.. +. .. .+-..++.+ +
T Consensus 239 g~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 239 GHVDVGDRWEDLADYAA-WHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CCCChHHHHHHHHHHHH-hhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 432222222 11111 1000 00111222456667788888888888877611 11 11 122223333 5
Q ss_pred HHcCCHHHHHHHHHHHhhc
Q 002790 592 RMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~ 610 (881)
...|+.++|...+.+++..
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6888999999888887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-05 Score=80.83 Aligned_cols=179 Identities=13% Similarity=0.008 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----H
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DL---ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV----A 515 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 515 (881)
.+..+-.+...|.+.|++++|...|+++.+. +. ..+..+...+.+.|++++|...++++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 4556666677777778888888877776532 11 355666777777788888888888777652 3211 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002790 516 FVAVLSACSHA--------GLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGT 586 (881)
Q Consensus 516 ~~~ll~a~~~~--------g~~~~A~~l~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~ 586 (881)
+..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44444444443 5677777777777633 4442 22222111100 00000 011124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLITET---TGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...+.+.|++++|+..++++++..|.+ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566889999999999999999886654 478899999999999999999999887664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=4e-07 Score=61.31 Aligned_cols=34 Identities=38% Similarity=0.835 Sum_probs=30.5
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002790 231 EGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 231 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 264 (881)
+|+.||..||++||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999884
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=86.63 Aligned_cols=195 Identities=13% Similarity=0.093 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--------CCHHHH
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFK--------PDGVAF 516 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~ 516 (881)
..|.-|.......++-..|+..+.+..+- |......|.-.|...|.-.+|++.|+.-+....+ ++...-
T Consensus 320 eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 320 EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 33333433444444444455555544432 4555666666666667666777777666543210 000000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMH 594 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~ 594 (881)
.. ..+.....+....++|-++....+..+|+.++..|.-.|.-.|.+++|.+.|+.. ..+|+ ...||-|...+...
T Consensus 400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 00 1122223345556666666656676688899999999999999999999999988 66665 56999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 595 KNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+.++|+..|.+++++.|.-..+.+.|+..|...|.++||.+.|-.+..-
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998876653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=87.24 Aligned_cols=199 Identities=11% Similarity=0.130 Sum_probs=166.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002790 446 NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK--------DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFV 517 (881)
Q Consensus 446 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 517 (881)
+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|++..+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4566777788888899999999999987643 2347888888877888888899999999874 22234788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHH
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP---NAYVWGTLLNSCRM 593 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p---d~~~~~~Ll~~~~~ 593 (881)
.|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++++. ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999998877 55678999999999999999999999876 2223 34455666677789
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcc
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLKK 648 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~~ 648 (881)
.|+.+.+..+|+..+.-.|.-...|+.++++-.+.|+.+.+..+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999887643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.3e-07 Score=59.54 Aligned_cols=34 Identities=35% Similarity=0.673 Sum_probs=29.2
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 002790 165 MGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR 198 (881)
Q Consensus 165 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 198 (881)
.|+.||..+||.||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788899999999999999999999998888874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.011 Score=64.49 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
.+|...+....+..-...|..+|.+..+.+..+ +...+++++.-+| .++.+-|.++|+.-.+++|-. +.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 456666666666666777777777777776666 4445566666555 456777777777766554332 334456677
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC----cchHHHHHHHHHHc
Q 002790 558 LLGRAGLLQEASDIVKNM---PMEPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET----TGSYMLLSNIYAAS 628 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m---~~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 628 (881)
-+...++-..|..+|++. ...|| ...|..++.--..-|+...+.++-++.....|.+ ...-..+.+.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777777777777777776 12333 3578888877777888888877777776655521 12334556666666
Q ss_pred CCHHHHHHHHHHH
Q 002790 629 GRWEDAAKVRISA 641 (881)
Q Consensus 629 g~~~eA~~~~~~m 641 (881)
+.+..-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 6655444444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.9e-05 Score=75.53 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCC--HHH
Q 002790 526 AGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNS-CRMHKN--TDV 599 (881)
Q Consensus 526 ~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~-~~~~g~--~~~ 599 (881)
.++.+++...++...+ ..| +...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555666666666552 244 3667777777777777777777777766 4444 45566677665 356666 589
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
|.++++++++.+|.++.++..++..+.+.|++++|+..|+++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999887754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0019 Score=70.22 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=73.3
Q ss_pred HcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHccCCccccc
Q 002790 74 ARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLGVLGD-GFTFPLVIRACKFMGSFRFRF 152 (881)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~ 152 (881)
...|+++.|+..|-+...-.|+|-+.|+.-..+|+..|++++|++=-.+-++. .|+ ...|+-.-.++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA- 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA- 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH-
Confidence 45689999999997766656778888998999999999999888766665554 344 45677777788888888888
Q ss_pred chHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002790 153 SFGQIVHNHVLQMGFQGNVHIVNELIGMY 181 (881)
Q Consensus 153 ~~~~~~~~~m~~~g~~~~~~~~~~Li~~~ 181 (881)
..-+..-++.. +.|...++-|..++
T Consensus 90 ---~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ---ILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred ---HHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 66666655542 33455666666666
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.9e-05 Score=87.51 Aligned_cols=139 Identities=11% Similarity=0.081 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYAC 554 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~ 554 (881)
++..+..|.....+.|++++|..+++...+. .||.. ....+...+.+.+++++|...+++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 5777777888888888888888888888875 66655 66677778888888888888888887 45666 566777
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHH
Q 002790 555 MVDLLGRAGLLQEASDIVKNMP-MEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~-~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 620 (881)
+..++.+.|++++|.++|++.- ..|+ ..++.++..++.+.|+.++|...|+++++...+-...|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 7888888888888888888873 3344 5678888888888888888888888888775554444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-05 Score=74.09 Aligned_cols=93 Identities=12% Similarity=-0.110 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 002790 552 YACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
+..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|+..|+++.+.+|.++..+..++.++.+.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444555666666666666666665 3333 45567777777777777777877787777777777777778888887888
Q ss_pred CHHHHHHHHHHHHhC
Q 002790 630 RWEDAAKVRISAKTK 644 (881)
Q Consensus 630 ~~~eA~~~~~~m~~~ 644 (881)
++++|++.++...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888887777776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.5e-05 Score=71.65 Aligned_cols=122 Identities=9% Similarity=0.001 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-P 576 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~ 576 (881)
.+|++.++. .|+. +.....++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 455555543 4443 4455666777888888888888777 44554 677777888888888888888888777 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 002790 577 MEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 577 ~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (881)
..| +...+..+..++...|+.++|+..++++++..|.++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 333 567888888888999999999999999999999999888777766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=79.94 Aligned_cols=217 Identities=19% Similarity=0.248 Sum_probs=158.0
Q ss_pred HHHHhcCCHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCC
Q 002790 315 CVYGKHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNG 391 (881)
Q Consensus 315 ~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g 391 (881)
.-+.+.|++.+|.-.|+..... +...|--|......+++-..|+..+++..+.. +.|......|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-----P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-----PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-----CccHHHHHHHHHHHhhhh
Confidence 3456789999999999987763 45689889889999999999999999999865 567788888899999999
Q ss_pred ChHHHHHHHHHHHHCCCC--------CchhHHHHHHHHHhhhchHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhcCC
Q 002790 392 RGEEALDLFRKMQLAKVV--------ANSVTISGLLSVCAESAALNIGREIHGHVV-RVSMNKNILVQNGLLNMYMKCGC 462 (881)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~-~~g~~~~~~~~~~Li~~y~~~g~ 462 (881)
.-.+|++.++.......+ ++...-.. ..+.....+....++|-++. ..+..+|+.++..|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999988654210 00000000 12233334445555555553 45555777788888878888888
Q ss_pred HHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 002790 463 LEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 463 ~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
+++|...|+.... | |...||-|...++...+.++|+..|++.++. +|+-+ ....|.-+|...|.+++|...|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888888887753 3 7778888888888888888888888888874 67755 555566678888888888877665
Q ss_pred HH
Q 002790 539 MV 540 (881)
Q Consensus 539 m~ 540 (881)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 54
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.7e-05 Score=82.65 Aligned_cols=211 Identities=12% Similarity=0.014 Sum_probs=153.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHHcCC
Q 002790 416 SGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--KDLITWNSMISGYGMNGL 493 (881)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~ 493 (881)
..+...+.+.|-...|..+++.. ..+...|.+|+..|+..+|..+..+-.+ +|...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 33444445555555565555533 3345567788888877777777665543 467777777777666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIV 572 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~ 572 (881)
+++|.++++..... .-..+..-..+.++++++.+.|+.-. .+.|- ..+|-.+.-+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 77788877654432 11111122234678888888888766 34443 678888888888899999998888
Q ss_pred HhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 573 KNM-PMEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 573 ~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
... ...||. ..||.+-.+|.+.++-.+|...+.++.+-+-.+..++....-...+.|.|++|++.+.++.+-.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 776 566765 5899999999999999999999999999888888888888889999999999999999987643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00025 Score=79.51 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH
Q 002790 310 KNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS 389 (881)
Q Consensus 310 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~ 389 (881)
-..+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+..+ .+||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le------k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE------KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc------CCCcchhHHHhhhhccC
Confidence 3344455555555555555555532 344455555555555555555554444 14455555555544444
Q ss_pred CCChHHHHHHHHH
Q 002790 390 NGRGEEALDLFRK 402 (881)
Q Consensus 390 ~g~~~~A~~l~~~ 402 (881)
..-+++|.++++.
T Consensus 470 ~s~yEkawElsn~ 482 (777)
T KOG1128|consen 470 PSLYEKAWELSNY 482 (777)
T ss_pred hHHHHHHHHHhhh
Confidence 4445555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00091 Score=79.85 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=169.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCC
Q 002790 304 EDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--------KNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERP 375 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p 375 (881)
|.+...|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|++..+.- .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------d 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------D 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------c
Confidence 55667888888888999999999999988764 123578888888777888888889999888732 2
Q ss_pred ChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-CchhHHHHHH
Q 002790 376 NVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMN-KNILVQNGLL 454 (881)
Q Consensus 376 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~Li 454 (881)
....|..|...|.+.+..++|.++|+.|.+.- .-....|...+..+.+..+-+.|..++.++++.-.+ -.+......+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 34578888999999999999999999998763 356677888888888888889999999888774322 2455666667
Q ss_pred HHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCH
Q 002790 455 NMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV--AFVAVLSACSHAGLV 529 (881)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~ 529 (881)
.+-.+.|+.+.++.+|+..... -...|+..|+.-.++|+.+.+..+|++....++.|-.. .|...+.-=.+.|+-
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 7788999999999999987642 56789999999999999999999999999988777543 344444433344443
Q ss_pred H
Q 002790 530 N 530 (881)
Q Consensus 530 ~ 530 (881)
+
T Consensus 1688 ~ 1688 (1710)
T KOG1070|consen 1688 K 1688 (1710)
T ss_pred h
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=72.78 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=124.5
Q ss_pred CchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CH---HHH
Q 002790 410 ANSVTISGLLSVCAESAALNIGREIHGHVVRVSMN-K-NILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DL---ITW 481 (881)
Q Consensus 410 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~-~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~---~~~ 481 (881)
.....+..+...+.+.|+++.|...++.+.+.... | ....+..+...|.+.|++++|...++++.+. +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556677777888999999999999999875432 1 1246677889999999999999999998642 22 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHH
Q 002790 482 NSMISGYGMN--------GLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHY 552 (881)
Q Consensus 482 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~ 552 (881)
..+..++... |+.++|.+.|+++... .|+.. ....+... .. . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHH
Confidence 5555666554 6789999999999886 55543 22111111 00 0 0000 0112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 553 ACMVDLLGRAGLLQEASDIVKNM----PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~l~~~m----~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
..+...|.+.|++++|...+++. +..| ....+..+..++.+.|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788889999988888776 2223 245788888888999999999988887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.002 Score=69.57 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=94.8
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHH
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTD 598 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~ 598 (881)
.+...|.+++|+..++.+.++ .|+ +..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345678888888888888743 555 556667788888999999999988887 55666 557777888888899999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 599 VAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 599 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+|+.+++.....+|+++..|..|+.+|...|+..+|...+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999888888999999999999998888888888777665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.7e-05 Score=69.04 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=81.2
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHH
Q 002790 544 RIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620 (881)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 620 (881)
...|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+..|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34554 345566677777788888888887776 3333 56677888888888899999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 621 LSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 621 l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
++.+|...|++++|.+.+++..+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998877753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0016 Score=69.63 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=120.0
Q ss_pred HHHhcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 002790 456 MYMKCG-CLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLG--ENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 456 ~y~~~g-~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (881)
.+.+.| +++++...++++.+ ++...|+.....+.+.|+. ++++++++++++.. +-|...|.....++.+.|++
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhH
Confidence 334444 45677777766653 2445666555455555542 56778888887764 33556777777777788888
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----C
Q 002790 530 NEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRA---GLL----QEASDIVKNM-PMEP-NAYVWGTLLNSCRMH----K 595 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~----~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~----g 595 (881)
+++++.++++++. .| +...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+... +
T Consensus 159 ~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 159 EDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 8888888888733 33 355666665555544 222 4566666444 4444 455788887777663 4
Q ss_pred CHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC------------------CHHHHHHHHHHH
Q 002790 596 NTDVAEAMASQIFGLITETTGSYMLLSNIYAASG------------------RWEDAAKVRISA 641 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~eA~~~~~~m 641 (881)
+..+|...+.++....|.++.....|++.|+... ..++|.++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 4567888999988888999999999999998643 235677777766
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=77.90 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=115.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHH
Q 002790 442 SMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK--K-DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGV-AFV 517 (881)
Q Consensus 442 g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~ 517 (881)
.+..++..+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 4566788888899999999999999999999864 4 5667888889999999999999999999986 55554 566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLL 588 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~Ll 588 (881)
.+..++.+.|++++|..+|+++.. ..|+ ...+..+..++...|+.++|...|++. ...|-...|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667788899999999999999984 3455 788999999999999999999999987 3334455555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=67.71 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
......+...+...|++++|.++|+-. ...| +...|..|..+|...|++++|+..|..+..+.|+++..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455566777788999999999999887 4444 45688889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 002790 627 ASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 627 ~~g~~~eA~~~~~~m~~~ 644 (881)
+.|+.++|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0016 Score=77.42 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIE 506 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 506 (881)
++..|..+|-+.|+.++|..+++++.+- |+...|.+...|+.. +.++|.+++.+...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 4444555555555555555555555431 444555555555555 55555555554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0072 Score=60.22 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA----GLV 529 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----g~~ 529 (881)
...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+. +.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 345566666666666655522 2222222223334445566666666666642 2444555555555432 335
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTLLNSCRMHK-NTDVAEAMASQ 606 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~Ll~~~~~~g-~~~~A~~~~~~ 606 (881)
.+|.-+|++|.+ ...|++.+.+-...++...|++++|..++++. +...++.+...++-.....| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666652 23455555555555555555555555555554 11223334433333332222 33334445555
Q ss_pred HhhcCCCCc
Q 002790 607 IFGLITETT 615 (881)
Q Consensus 607 ~~~~~p~~~ 615 (881)
+....|..+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0023 Score=69.11 Aligned_cols=137 Identities=20% Similarity=0.193 Sum_probs=111.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCC
Q 002790 487 GYGMNGLGENALATFEEMIEAGFKPDGVAFVA-VLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGL 564 (881)
Q Consensus 487 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (881)
.+...|..++|+..++.++.. .||...|.. ....+.+.++.++|.+.++++. ...|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence 445678899999999998876 666665544 4556889999999999999998 56787 6667788899999999
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 565 LQEASDIVKNM--PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 565 ~~eA~~l~~~m--~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+.+|+..++.. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|+..+...+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence 99999999887 34456789999999999999988876554 456778999999999999988
Q ss_pred hCC
Q 002790 643 TKG 645 (881)
Q Consensus 643 ~~g 645 (881)
++.
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.004 Score=61.52 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 002790 450 QNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSM---ISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA 526 (881)
Q Consensus 450 ~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (881)
|..++-+...+|+.+.|..+++.+...=+.++... ..-+-..|++++|+++++..++.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 44455566777888888888888754311111111 112345788999999999999876 66677887777777778
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---cCCHHHHH
Q 002790 527 GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRM---HKNTDVAE 601 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~---~g~~~~A~ 601 (881)
|+--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -..|- +..+..+...+.. ..+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888753 5678999999999999999999999999998 44454 4455666666433 34788999
Q ss_pred HHHHHHhhcCCCCcchHH
Q 002790 602 AMASQIFGLITETTGSYM 619 (881)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~ 619 (881)
.+|.+++++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999986654433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00058 Score=67.86 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 002790 510 KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--PMEPNAYVWGTL 587 (881)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--~~~pd~~~~~~L 587 (881)
.|+......+-.++...|+-+....+...... .-..|....+.++....+.|++.+|...+++. ..++|...|+-+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333334455556666666666666555431 12223445555777777777777777777776 344566677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 588 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
..+|-+.|++++|...|.++.++.|.++..++.|+..|.-.|+.+.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7777777777777777777777777777777777777777777777777777666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.002 Score=68.93 Aligned_cols=184 Identities=8% Similarity=0.050 Sum_probs=135.8
Q ss_pred HHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--H
Q 002790 456 MYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNG-LGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGL--V 529 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--~ 529 (881)
.+.+.++.++|....+++.+. +...|+.....+...| +++++++.++++.+.. +-+..+|+.-...+.+.|+ .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 344567788888888887653 4456776666666777 5799999999999874 3334456655555556665 3
Q ss_pred HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CC----HHH
Q 002790 530 NEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMH---KN----TDV 599 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~---g~----~~~ 599 (881)
+++..+++++. ...|. ...|+....++.+.|++++|++.++++ ... -|..+|+.....+... |. .+.
T Consensus 125 ~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 67888998888 44564 788998999999999999999999998 333 3556777776665543 22 356
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAAS----GRWEDAAKVRISAKT 643 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~eA~~~~~~m~~ 643 (881)
.+.+..+++..+|.|...|..+..++... ++..+|.+.+.+..+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 78888899999999999999999999883 455678877776544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.13 Score=59.71 Aligned_cols=159 Identities=11% Similarity=0.007 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 481 WNSMISGYGMNGLGE---NALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 481 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
-+.|++.+.+.++.. +|+-+++.-.... +.|..+-..+|+.|+-.|-...|..+|+.+--+ .+..|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence 455666666665543 3444444444332 334445555666666667777777776666422 4444433222 223
Q ss_pred HHHHcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCCH
Q 002790 558 LLGRAGLLQEASDIVKNMP-M-EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLI----TETTGSYMLLSNIYAASGRW 631 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m~-~-~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 631 (881)
.+...|++..+...++..- . ..+..----.|....+.|.+.+..++..--..+. ..-..+=+......+..++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 3344455555554444320 0 0000001112222334555555444433222221 11122334566677777888
Q ss_pred HHHHHHHHHHH
Q 002790 632 EDAAKVRISAK 642 (881)
Q Consensus 632 ~eA~~~~~~m~ 642 (881)
++-...+..|+
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 88887777776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00039 Score=75.75 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=88.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 002790 517 VAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMH 594 (881)
Q Consensus 517 ~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~ 594 (881)
.+++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34444455556666666666666632 243 3334566666666666676666665 2223 455556566668899
Q ss_pred CCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 595 KNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 595 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00066 Score=73.99 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
....+|+..+...++++.|..+|+++.+.+......++..+...++-.+|++++++.+... +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445567777788899999999999988777777778888888888889999999988652 335555666666788899
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002790 528 LVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEP 579 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~p 579 (881)
+++.|..+.+++. ...|+ ..+|..|..+|.+.|++++|+-.++.++.-|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999998 56787 6789999999999999999999999887554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0033 Score=62.60 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 002790 519 VLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKN 596 (881)
Q Consensus 519 ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~ 596 (881)
.+....+.|++.+|...+.+... .-.+|...|+.+.-+|-+.|++++|..-|.+. ...| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444445555555555554441 11223445555555555555555555444443 2222 23344555555555555
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 002790 597 TDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
.+.|+.++.......+.+..+-..|..+....|++++|.++
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555566666666666665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0028 Score=63.07 Aligned_cols=153 Identities=10% Similarity=0.153 Sum_probs=107.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGR 533 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 533 (881)
+-.|.+.|+++.+....+.+..+. ..+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346666777666544443332221 01223556677777777777653 556667888888888888888888
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 534 RIFDMMVREFRIEPQ-MEHYACMVDLL-GRAGL--LQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 534 ~l~~~m~~~~~~~p~-~~~~~~li~~~-~~~g~--~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
..|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887 45564 67777777764 66676 48888888887 4445 4567777888899999999999999999
Q ss_pred hhcCCCCcchH
Q 002790 608 FGLITETTGSY 618 (881)
Q Consensus 608 ~~~~p~~~~~~ 618 (881)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99988876544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.5e-05 Score=51.86 Aligned_cols=33 Identities=45% Similarity=0.766 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPD 512 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 512 (881)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.4e-05 Score=51.46 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGVLGDG 132 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 132 (881)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.016 Score=69.11 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHH
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHV 438 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~ 438 (881)
.++..+..+|-+.|+.++|...|+++.+.. +-|....+.+...++.. +++.|.+++..+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 355566666666666666666666666554 22333444444444444 444444444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0055 Score=61.02 Aligned_cols=243 Identities=9% Similarity=-0.014 Sum_probs=145.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 002790 384 IGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCL 463 (881)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 463 (881)
++-+.-.|.+..++..-...... +-+...-..+-+++...|..... ...+.. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccc-ccCChHHHHHHHHHHhhCcchh
Confidence 45566677777776655544332 12223333333444444443221 112222 2233333333333333334443
Q ss_pred HHH-HHHHHhcccC---CHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 002790 464 EEG-HLVFEQIEKK---DLITWNS-MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 464 ~~A-~~~~~~m~~~---d~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
++- .++.+.+..+ +..++.. -...|+..|++++|++...... +......=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233333332 2222322 2345777889999998877622 222223333445677788999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHH----HHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 002790 539 MVREFRIEPQMEHYACMVDLL----GRAGLLQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 539 m~~~~~~~p~~~~~~~li~~~----~~~g~~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p 612 (881)
|. .+.- ..+.+.|..++ ...+.+.+|.-+|++|. ..|+..+.+....++...+++++|+.+++.++...+
T Consensus 163 mq---~ide-d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQ---QIDE-DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HH---ccch-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 97 3333 34555455544 44567899999999993 568888888888899999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 002790 613 ETTGSYMLLSNIYAASGRWEDAAK-VRISAK 642 (881)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~eA~~-~~~~m~ 642 (881)
.++.+...++-.-...|+-.++.+ .+..++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999888888888888766654 334333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.032 Score=55.34 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=127.4
Q ss_pred CCChhHHHHHHHHhHH---cC-CCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccch
Q 002790 215 NFDCDGALELFKRMEL---EG-LEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADH 289 (881)
Q Consensus 215 ~g~~~~A~~l~~~m~~---~g-~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 289 (881)
..++++.++++.+|.. .| ..|+..+ |..++-+....|+.+.|..+++++..+- |
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p------------------- 83 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--P------------------- 83 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--C-------------------
Confidence 4567777777777653 23 4566654 6667777777788888888877776652 2
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 290 MGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 290 ~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
.+..+...-.-.+-..|++++|.++++.+.+. |.+++---+...-..|+.-+|++.+....+
T Consensus 84 ---------------~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 84 ---------------GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred ---------------CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22222222222344578899999999998863 446677777777778888899998888887
Q ss_pred ccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh-HHHHHHHHH---hhhchHHHHHHHHHHHHHcC
Q 002790 367 LDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV-TISGLLSVC---AESAALNIGREIHGHVVRVS 442 (881)
Q Consensus 367 ~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~---~~~g~~~~a~~i~~~~~~~g 442 (881)
.- ..|...|.-+...|...|++++|.-.++++.-. .|... .+..+-..+ .-..+...+++++...++..
T Consensus 149 ~F-----~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 149 KF-----MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred Hh-----cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65 678899999999999999999999999999865 45433 333333332 22345666777777777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=61.46 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=81.7
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 002790 500 TFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-P 576 (881)
Q Consensus 500 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~ 576 (881)
.|++..+. .|+. .....+...+...|++++|.+.++.+.. ..| +...+..+...+.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555543 4433 3455666677788888888888888773 234 4677788888888888888888888776 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcc
Q 002790 577 MEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG 616 (881)
Q Consensus 577 ~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 616 (881)
..| +...+..+...+...|++++|...++++.+..|.+..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 344 4567777777888899999999999999998887764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=60.88 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCHHH
Q 002790 526 AGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP-MEPNA----YVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 526 ~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~-~~pd~----~~~~~Ll~~~~~~g~~~~ 599 (881)
.++.+.+...++.+.++++-.|- ....-.+...+...|++++|...|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555543221111 1223334455566666666666666551 11232 233445555667777777
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
|+..++.. ...+..+..+..++++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 223344566778888888888888888887753
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.6e-05 Score=49.90 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGVLG 130 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 130 (881)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKP 511 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 511 (881)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00083 Score=57.00 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 002790 552 YACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
+..+...+...|++++|.+.+++. ...|+ ...+..+...+...+++++|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 33333 3567777777888899999999999999888888888899999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 002790 630 RWEDAAKVRISAKTK 644 (881)
Q Consensus 630 ~~~eA~~~~~~m~~~ 644 (881)
++++|.+.+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998877653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=60.51 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 002790 563 GLLQEASDIVKNM-PMEP---NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVR 638 (881)
Q Consensus 563 g~~~eA~~l~~~m-~~~p---d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 638 (881)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+..|.+......++.+|.+.|++++|++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444455444444 1112 233444456666666666666666666 5555666666667788888888888888877
Q ss_pred HH
Q 002790 639 IS 640 (881)
Q Consensus 639 ~~ 640 (881)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=58.65 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---cchHHHHH
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITET---TGSYMLLS 622 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 622 (881)
++..++..+.+.|++++|.+.++++ ...|+ ...+..+...+.+.|+++.|...++.+....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555555666565555555 11222 2344555666667777777777777776665553 34566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 002790 623 NIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777766654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0086 Score=56.34 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhHHHH
Q 002790 481 WNSMISGYGMNGLGENALATFEEMIEAGFKPDG----VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEHYAC 554 (881)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~ 554 (881)
|..++..+ ..++...+.+.++++.... |+. .....+...+...|++++|...|+..... ...|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 3667777777777777753 222 23333445677778888888888887743 22222 223445
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 555 MVDLLGRAGLLQEASDIVKNMPME-PNAYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
|...+...|++++|+..++..... .....+......+...|++++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777888888888888775322 23345555666688888888888888765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0074 Score=63.64 Aligned_cols=267 Identities=12% Similarity=0.040 Sum_probs=152.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHhh
Q 002790 346 TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVAN-SVTISGLLSVCAE 424 (881)
Q Consensus 346 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 424 (881)
..+.+...+.+|+..+...++.. +.+..-|..-...+...|++++|+--.++-.+. +|. .......-+++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-----pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-----PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-----ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 34555666667777777766644 334455666666666677777766555444322 221 1122222333333
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc-----cCCHHHHHHHH-HHHHHcCChHHHH
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE-----KKDLITWNSMI-SGYGMNGLGENAL 498 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~d~~~~~~li-~~~~~~g~~~~A~ 498 (881)
.++..+|.+.++ +...+ ....|...++.+. +|...+|..+- .++...|++++|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444333 00000 0111111111111 12223343332 2334456666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHhcCCCCChhH-------------HHHHHHHHHHcC
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSA--CSHAGLVNEGRRIFDMMVREFRIEPQMEH-------------YACMVDLLGRAG 563 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a--~~~~g~~~~A~~l~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g 563 (881)
..--..++.. ++ ..+..++++ +...++.+.|...|++.+ .+.|+... +..=.+-..+.|
T Consensus 190 ~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 190 SEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 6555554431 11 122223332 234456666666666665 44554221 111234467889
Q ss_pred CHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHH
Q 002790 564 LLQEASDIVKNM-PMEP-----NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKV 637 (881)
Q Consensus 564 ~~~eA~~l~~~m-~~~p-----d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 637 (881)
++.+|.+.+.+. .+.| +...|........+.|+.++|+.-++++.+++|.-...|..-+.++.-.++|++|.+-
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 4444 4556666667778999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCC
Q 002790 638 RISAKTKG 645 (881)
Q Consensus 638 ~~~m~~~g 645 (881)
+++..+..
T Consensus 344 ~~~a~q~~ 351 (486)
T KOG0550|consen 344 YEKAMQLE 351 (486)
T ss_pred HHHHHhhc
Confidence 99877653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00057 Score=54.97 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG-RWEDAAKVRISAKT 643 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~m~~ 643 (881)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999998765
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0037 Score=56.28 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=58.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 002790 516 FVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLN 589 (881)
Q Consensus 516 ~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~ 589 (881)
+..+...+.+.|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|.+.+++. ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555532111111 234444555566666666666666554 22222 345666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCcchHH
Q 002790 590 SCRMHKNTDVAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 590 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 619 (881)
.+...|+.++|...++++++..|++.....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 677778888888888888877777665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.62 Score=54.48 Aligned_cols=211 Identities=15% Similarity=0.069 Sum_probs=137.5
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG 127 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 127 (881)
..+-..+.+.+-.+...++.+|+ +.+.|+.++|..+++......+.|..+...+-.+|.+.+..++|..+|++..+.
T Consensus 30 ~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~- 106 (932)
T KOG2053|consen 30 AKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK- 106 (932)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-
Confidence 33444444444444444444443 357799999999998876644458889999999999999999999999998865
Q ss_pred CCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhhc
Q 002790 128 VLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQ----------MSDSFKLFDKV 197 (881)
Q Consensus 128 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~----------~~~A~~l~~~m 197 (881)
-|+..-...+..++.+.+++.+- +++--++-+ .++-+.+.+-++++.+...-. ..-|.+.++.+
T Consensus 107 -~P~eell~~lFmayvR~~~yk~q----Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 107 -YPSEELLYHLFMAYVREKSYKKQ----QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 56777778888899888887766 333333323 356677777788887765421 22355555555
Q ss_pred CCCC-e-eh---HHHHHHHHHhCCChhHHHHHHH-HhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 198 RVKN-Y-IS---WNMMFSGFALNFDCDGALELFK-RMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 198 ~~~~-~-~~---y~~li~~~~~~g~~~~A~~l~~-~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
.+.+ . .+ .-.....+...|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++..+|
T Consensus 181 l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 181 LEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4333 1 11 1112233446778888888883 33333223333444556677788888888888888888776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.17 Score=54.02 Aligned_cols=110 Identities=11% Similarity=0.190 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002790 514 VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRM 593 (881)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~ 593 (881)
.+.+..+.-|...|....|.++-.+. ++ |+...|...+.+|+..|++++-.++.+. +-.+.-|..++..|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35666677788888888877776544 44 8888999999999999999988887654 2245788889999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
.|+..+|..+..+ ..+..-+.+|.+.|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888777 2335678889999999999887443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00036 Score=45.82 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHcC
Q 002790 204 SWNMMFSGFALNFDCDGALELFKRMELEG 232 (881)
Q Consensus 204 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g 232 (881)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0049 Score=67.51 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTD 598 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~ 598 (881)
.+...|++++|+..|++++ ...|+ ...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666555 23343 344444455555555555555555444 2222 2334444444455555555
Q ss_pred HHHHHHHHHhhcCCCCcchHH
Q 002790 599 VAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 599 ~A~~~~~~~~~~~p~~~~~~~ 619 (881)
+|+..+++++++.|.++....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555444333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=65.60 Aligned_cols=129 Identities=13% Similarity=0.022 Sum_probs=96.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH---HHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CCHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMM---VREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-------PME-PNAY 582 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m---~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-------~~~-pd~~ 582 (881)
.|..|...|.-.|+++.|+...+.- .+++|-... ...+..+.+++.-.|+++.|.+.|+.. +.+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666678899998776642 234454433 567888999999999999999998764 211 3345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGL------ITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+..+|.+.|.-..++++|+.++.+-+.+ .......++.|+++|...|..++|+.+....++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6678888888888999999998875543 233567899999999999999999998776654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00042 Score=45.53 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 002790 98 LLWNSILRVNVSNGLYENALKLYVKMRKLGV 128 (881)
Q Consensus 98 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 128 (881)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.47 Score=51.20 Aligned_cols=189 Identities=11% Similarity=0.073 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCHH-------HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIE--KKDLI-------TWNSMISGYGM----NGLGENALATFEEMIEAGFKPDGV 514 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~d~~-------~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ 514 (881)
.++..++....+.++...|.+.+.-+. +|+.. +-..+-+..+. .-+..+-+.+|++.....+.-..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ- 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ- 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-
Confidence 455566666667777777766666543 22111 11112222221 12334455666666655322211
Q ss_pred HHHHHHH---HHHccCC-HHHHHHHHHHHHHhcCCCCC-hhHHHHHH----HHHHHc---CCHH---HHHHHHHhCCCCC
Q 002790 515 AFVAVLS---ACSHAGL-VNEGRRIFDMMVREFRIEPQ-MEHYACMV----DLLGRA---GLLQ---EASDIVKNMPMEP 579 (881)
Q Consensus 515 t~~~ll~---a~~~~g~-~~~A~~l~~~m~~~~~~~p~-~~~~~~li----~~~~~~---g~~~---eA~~l~~~m~~~p 579 (881)
-...++. -+-+.|. -+.|+++++.+. .+.|. ...-|.+. ..|..+ ..+. +-.+.+++.++.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1222222 2445555 778888888887 33443 33333222 122211 1122 2233445555554
Q ss_pred ----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 580 ----NAYVWGTLLNS--CRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 580 ----d~~~~~~Ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
+...-|.|..+ +..+|++.++.-...=+.+..| ++.+|..++-.+....+++||.+++.++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34477788887 5789999999877776677777 8999999999999999999999998844
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=52.42 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 587 Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999988754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0039 Score=68.38 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=94.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhcCC-C-----CeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHH
Q 002790 168 QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV-K-----NYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWT 241 (881)
Q Consensus 168 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-~-----~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~ 241 (881)
+.+......+++......+++.+..++-+... + -..+..++|+.|.+.|..++++.+++.=...|+-||..|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555556666666666777778877776653 1 12355689999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 002790 242 SLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADL 285 (881)
Q Consensus 242 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 285 (881)
.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999888888888887777776554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.005 Score=59.91 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 550 EHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 550 ~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
..+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|+..++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44556666666667777777766655 22222 35677777778888999999999999988888888888888888
Q ss_pred HHHcCC
Q 002790 625 YAASGR 630 (881)
Q Consensus 625 ~~~~g~ 630 (881)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0047 Score=59.86 Aligned_cols=93 Identities=14% Similarity=-0.088 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777778888888877766 22222 3478888888999999999999999999999998888888888
Q ss_pred HHH-------HcCCHHHHHHHHHHH
Q 002790 624 IYA-------ASGRWEDAAKVRISA 641 (881)
Q Consensus 624 ~~~-------~~g~~~eA~~~~~~m 641 (881)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888777766654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0065 Score=56.75 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=81.8
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHH
Q 002790 544 RIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMP--MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYML 620 (881)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~--~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 620 (881)
|+.++ .........-+...|++++|..+|+-+. ..-+...|..|..+|...+++++|+..|..+..+.+.||..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55544 2333344555678899999999998762 22356678888888999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 002790 621 LSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 621 l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+..|...|+.++|...|....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999997766
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.21 Score=52.81 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-----
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGF-----KPDGV-AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ----- 548 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~~-t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~----- 548 (881)
++..+...+.+.|++++|.++|++....-. +.+.. .|...+-++...|++..|.+.+++.. ...|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~---~~~~~F~~s~ 233 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC---SQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG---TTSTTSTTSH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcH
Confidence 455667778888999999999998876432 22222 23333445667788889998888876 33442
Q ss_pred -hhHHHHHHHHHH--HcCCHHHHHHHHHhCC
Q 002790 549 -MEHYACMVDLLG--RAGLLQEASDIVKNMP 576 (881)
Q Consensus 549 -~~~~~~li~~~~--~~g~~~eA~~l~~~m~ 576 (881)
......|++++- ....+++|+.-|+.+.
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233445555553 2345667777777663
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.005 Score=62.59 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=68.2
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~-~~~~~Ll~~~~~~g~~~~ 599 (881)
..+.+++++|+..|.+.+ .+.|. ++.|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 445667777777777776 45654 555566667777777777777666554 555543 478888888888888888
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 600 AEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
|++.|+++++++|.+......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 8888888888888887444444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.69 Score=50.02 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=81.2
Q ss_pred HHHhcCC-HHHHHHHHHhccc---CCHHHHHHHHH----HHHHc---CChHHHHHHHHHHHHcCCCCCHHHH----HHHH
Q 002790 456 MYMKCGC-LEEGHLVFEQIEK---KDLITWNSMIS----GYGMN---GLGENALATFEEMIEAGFKPDGVAF----VAVL 520 (881)
Q Consensus 456 ~y~~~g~-~~~A~~~~~~m~~---~d~~~~~~li~----~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~----~~ll 520 (881)
-+-+.|. -++|..+++.+.+ -|..+-|.+.. .|.+. ....+-+.+-+-..+.|+.|-.+.= +.|.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 3444555 7778888887764 35555554332 22221 2234444444455567877765432 3333
Q ss_pred HH--HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002790 521 SA--CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGT 586 (881)
Q Consensus 521 ~a--~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~ 586 (881)
.| +...|++.++.-.-..+. .+.|++.+|..+.-++....+++||.+++..++ |+..++++
T Consensus 468 DAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 32 346788888877766666 678999999999999999999999999999885 45555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=64.97 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=82.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcC
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAG 563 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g 563 (881)
...+...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++++. .+.|+ ...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHhC
Confidence 455667899999999999999874 3456688888889999999999999999998 45665 778888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 002790 564 LLQEASDIVKNM-PMEPNAYVWGTLLNSC 591 (881)
Q Consensus 564 ~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~ 591 (881)
++++|+..|++. ...|+.......+..|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999887 5666655554444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.026 Score=64.59 Aligned_cols=137 Identities=14% Similarity=0.026 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHHHHHh
Q 002790 477 DLITWNSMISGYGMN-----GLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHA--------GLVNEGRRIFDMMVRE 542 (881)
Q Consensus 477 d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~A~~l~~~m~~~ 542 (881)
|...|...+++.... +...+|..+|++.++. .|+.. .+..+..++... .++..+.+..++....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 556666666654332 2255777777777775 55543 333332222111 0111222222221100
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 543 FRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 543 ~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.....++..|.++.-.+...|++++|...+++. ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 001112334444433333444444444444444 3334444444444444444444444444444444444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0091 Score=50.37 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 482 NSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 482 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555432 1222344444444455555555555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0083 Score=51.79 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHcCC-CCCHhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002790 207 MMFSGFALNFDCDGALELFKRMELEGL-EPNFVTWTSLLSSHARCG--------RLEETMDLFDMMRKRGIEVGAEAIAV 277 (881)
Q Consensus 207 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~ty~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~~~ 277 (881)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445555566888888888888888888 788888888887776543 24456777888888788888877777
Q ss_pred HHHHHh
Q 002790 278 VLSVCA 283 (881)
Q Consensus 278 ll~~~~ 283 (881)
++....
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 776553
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.1 Score=57.98 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHH--HHHHhcC
Q 002790 234 EPNFVTWTSLLSSHARCGRLEETMDL---------FDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIH--GFVIKGG 302 (881)
Q Consensus 234 ~pd~~ty~~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~--~~~~~~g 302 (881)
.|....+.+-+..|...|.+++|.++ ++.+... ..+.-.+++.-.+|.+.++...-+.+. +.+.+.|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34455566666667777777776554 1222111 123334555556777777766555543 4456667
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 002790 303 FEDYVFVKNALICVYGKHGDVKVAQNLFSEI 333 (881)
Q Consensus 303 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m 333 (881)
-.|+... +...++-.|++.+|-++|.+-
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 6666543 345566678888888887763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.031 Score=63.99 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=100.0
Q ss_pred cCCCCCHHHHHHHHHHHHcc--C---CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHc--------CCHHHHHHHH
Q 002790 507 AGFKPDGVAFVAVLSACSHA--G---LVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRA--------GLLQEASDIV 572 (881)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~~--g---~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~eA~~l~ 572 (881)
.+.+.|...|...+++.... + ..+.|..+|++.. ...|+ ...|..+..++... ++++.+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34567778888888875543 2 3778999999998 56888 55566555444332 1234445555
Q ss_pred HhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 573 KNM----PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 573 ~~m----~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
++. ....+...|..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 443 1233556777776667778999999999999999998 57899999999999999999999999887643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.015 Score=50.25 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=46.0
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCC-CCchhHHHHHHHHHhhhc--------hHHHHHHHHHHHHHcCCCCchhHHHHH
Q 002790 383 VIGAFASNGRGEEALDLFRKMQLAKV-VANSVTISGLLSVCAESA--------ALNIGREIHGHVVRVSMNKNILVQNGL 453 (881)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~g~~~~~~~~~~L 453 (881)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 666666666666655432 344455666666666666666666666
Q ss_pred HHHHHh
Q 002790 454 LNMYMK 459 (881)
Q Consensus 454 i~~y~~ 459 (881)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0035 Score=52.66 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=42.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHH
Q 002790 491 NGLGENALATFEEMIEAGFK-PDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEA 568 (881)
Q Consensus 491 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 568 (881)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666677777766665321 1333444456666666666666666665 2 22232 23333445666666666666
Q ss_pred HHHHHh
Q 002790 569 SDIVKN 574 (881)
Q Consensus 569 ~~l~~~ 574 (881)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.035 Score=53.92 Aligned_cols=129 Identities=13% Similarity=0.152 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPD--GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYA 553 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~ 553 (881)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.. ...|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHH
Confidence 445677777778888888888888888876543332 3467777788888888888888888887 33454 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC
Q 002790 554 CMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASG 629 (881)
Q Consensus 554 ~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (881)
.+...|...|+...+..-++.. ...+++|.+.++++.+..|++ |..++.-+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6777777777766555433321 113677888888888888776 444444444333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=1.4 Score=50.55 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 002790 508 GFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTL 587 (881)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~L 587 (881)
|..-...+.+-.+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.++. +.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhH
Confidence 334445567777778888999999999888775 68888888889999999999999888887752 4667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 588 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
..+|.+.|+.++|.++.-+.-.+ .-...+|.+.|++.+|.+.--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 89999999999999887764322 157889999999999988744
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0019 Score=51.64 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
...|++++|+..++++.+..|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998865543
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=59.87 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCH
Q 002790 487 GYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLL 565 (881)
Q Consensus 487 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 565 (881)
-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 3566788899999999988863 4456677777888999999999988888877 56776 67889999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHH
Q 002790 566 QEASDIVKNM-PMEPNAYVWGTLLNS 590 (881)
Q Consensus 566 ~eA~~l~~~m-~~~pd~~~~~~Ll~~ 590 (881)
++|++.|++. .+.|+..+|-.=+..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999998887 788888776544433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0075 Score=58.70 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.9
Q ss_pred CCCeehHHHHHHHHH-----hCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHh
Q 002790 199 VKNYISWNMMFSGFA-----LNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHAR 249 (881)
Q Consensus 199 ~~~~~~y~~li~~~~-----~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~ 249 (881)
.++-.+|..++..|. +.|..+=....++.|.+.|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 345555666666555 456777788888889999999999999999987754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.4 Score=50.72 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=75.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcc
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMN-GLGENALATFEEMIEA----GFKPD--GVAFVAVLSACSHA 526 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~pd--~~t~~~ll~a~~~~ 526 (881)
++.|...|++..|-+++.. +...|... |++++|++.|++..+. | .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4566677777766555444 34455555 6777777777766542 2 111 22556666778888
Q ss_pred CCHHHHHHHHHHHHHhcCC----CCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C---HHHHHHHHHHHHH-
Q 002790 527 GLVNEGRRIFDMMVREFRI----EPQM-EHYACMVDLLGRAGLLQEASDIVKNM-PMEP---N---AYVWGTLLNSCRM- 593 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~----~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p---d---~~~~~~Ll~~~~~- 593 (881)
|++++|.++|++.....-- ..+. ..|-..+-++...|+...|.+.+++. ...| + ......|+.+|..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 8888888888887643211 1111 12333344566677888887777765 2222 1 2244455555533
Q ss_pred -cCCHHHHHHHHHHHhh
Q 002790 594 -HKNTDVAEAMASQIFG 609 (881)
Q Consensus 594 -~g~~~~A~~~~~~~~~ 609 (881)
...++.+..-|+.+..
T Consensus 249 D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISR 265 (282)
T ss_dssp -CCCHHHHCHHHTTSS-
T ss_pred CHHHHHHHHHHHcccCc
Confidence 2344444444444333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=59.83 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=83.5
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhcCCCCcchHH
Q 002790 546 EP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCR---MHKNTDVAEAMASQIFGLITETTGSYM 619 (881)
Q Consensus 546 ~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~ 619 (881)
.| |...|..|...|.+.|+++.|..-|.+. .+.| ++..+..+..++. ...+..++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 4788999999999999999999988887 4443 4456666666532 344678999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 620 LLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 620 ~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
.|+..+...|++.+|...|+.|.+..-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998753
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.05 Score=57.42 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA-CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVD 557 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~ 557 (881)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 356677777777777888888888887442 2233334433333 333566777888888888654 345677888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 558 LLGRAGLLQEASDIVKNM-PMEPN----AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 888888988998888877 22233 34899999999999999999999999999887743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0046 Score=50.22 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 588 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...+...+++++|.+.++++++.+|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999888654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.008 Score=47.52 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 555 MVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345566677777777777666 33453 45777777778888888888888888888887764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.02 Score=62.99 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=86.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC-CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh
Q 002790 304 EDYVFVKNALICVYGKHGDVKVAQNLFSEIEE-KN-----IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV 377 (881)
Q Consensus 304 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~ 377 (881)
+-+......+++......+++.+..++.+... |+ ..|..++|+.|.+.|..++++.+++.=...|+ -||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi----F~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI----FPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc----CCCh
Confidence 33444455556666666667777777766653 21 23455788888888888888888887777774 8888
Q ss_pred hhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhh
Q 002790 378 ISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAES 425 (881)
Q Consensus 378 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 425 (881)
.++|.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888877777777777777776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.4 Score=47.23 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 002790 450 QNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 450 ~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (881)
.+..|.-+...|+...|.++-.+..-||-.-|-..+.+++..+++++-.++-.. . -.++-|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCH
Confidence 344455667778888888888888888888888888999988888877665332 2 2337788888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSC 591 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~ 591 (881)
.+|..+..++. +..-+..|.++|++.+|.+.--+.+ |...+..+...|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 88888776532 2445677888888888877655543 444444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.046 Score=50.95 Aligned_cols=84 Identities=8% Similarity=-0.117 Sum_probs=36.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCC
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGL 564 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (881)
..+...|++++|..+|+-..... +-+..-|..|..+|-..|++++|+..|.... .+.|| +..+-.+..++...|+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHcCC
Confidence 33344455555555555444431 1122233334444444455555555555444 23333 3444444444444444
Q ss_pred HHHHHHHHH
Q 002790 565 LQEASDIVK 573 (881)
Q Consensus 565 ~~eA~~l~~ 573 (881)
.++|.+.|+
T Consensus 119 ~~~A~~aF~ 127 (157)
T PRK15363 119 VCYAIKALK 127 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.61 Score=48.00 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHccCCCCCCCCh-hh---HHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNV-IS---WSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~-~~---y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
....+.+.|++++|.+.|+++.... |+. .. .-.+..+|.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455666677777776666643 221 11 123446666777777777777776654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.7 Score=46.90 Aligned_cols=95 Identities=6% Similarity=0.060 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 002790 48 KQVHNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYVKMRKLG 127 (881)
Q Consensus 48 ~~l~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 127 (881)
.++.+++.+. +.|...|-.||+-|..+|..++.+++++++.+-.|-=..+|..-+++-....++..+..+|-+-....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3444444332 35677999999999999999999999999988444456689999998888899999999998877654
Q ss_pred CCCCcchHHHHHHHHHccC
Q 002790 128 VLGDGFTFPLVIRACKFMG 146 (881)
Q Consensus 128 ~~p~~~t~~~ll~a~~~~~ 146 (881)
.. ...|..-+.-..+..
T Consensus 107 l~--ldLW~lYl~YIRr~n 123 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVN 123 (660)
T ss_pred cc--HhHHHHHHHHHHhhC
Confidence 43 444554554444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.29 Score=50.36 Aligned_cols=193 Identities=8% Similarity=-0.045 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 002790 62 SAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLW---NSILRVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLV 138 (881)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 138 (881)
++...-.....+.+.|++++|.+.|+.+....|-+...- -.+..++.+.+++++|...+++..+.........|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333333445555678999999999998876444444433 34667888999999999999999886433233345445
Q ss_pred HHHHHccCCcccccchHHHHHHHHHHh-CCCCc-------hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCeehHHHHHH
Q 002790 139 IRACKFMGSFRFRFSFGQIVHNHVLQM-GFQGN-------VHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYISWNMMFS 210 (881)
Q Consensus 139 l~a~~~~~~~~~a~~~~~~~~~~m~~~-g~~~~-------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~~y~~li~ 210 (881)
+.+.+.... . ...+...... ....| ...+..++.-|=...-..+|...+..+...=..---.+..
T Consensus 111 ~~g~~~~~~---~----~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 111 MRGLTNMAL---D----DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred HHHHhhhhc---c----hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544431000 0 0000000000 00000 0122333333333333444444333332111111113344
Q ss_pred HHHhCCChhHHHHHHHHhHHcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHH
Q 002790 211 GFALNFDCDGALELFKRMELEGLEPNF----VTWTSLLSSHARCGRLEETMDLFDMM 263 (881)
Q Consensus 211 ~~~~~g~~~~A~~l~~~m~~~g~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~m 263 (881)
.|.+.|.+..|..-|+.+.+. -|+. .....++.+|.+.|..++|.+....+
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 566777777777777777654 3332 23445666677777777666665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.054 Score=52.39 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPD--GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACM 555 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~l 555 (881)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...+++..+ +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 4556666666667777777777777665422221 23566666666677777777777766662 2333 3344444
Q ss_pred HHHHH
Q 002790 556 VDLLG 560 (881)
Q Consensus 556 i~~~~ 560 (881)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.03 Score=54.63 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=75.6
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 002790 467 HLVFEQI--EKKDLITWNSMISGYGMN-----GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA------------- 526 (881)
Q Consensus 467 ~~~~~~m--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 526 (881)
...|+.. ..+|-.+|..+++.|.+. |..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 456777888888888754 66777778889999999999999999999887543
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 002790 527 ---GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGL 564 (881)
Q Consensus 527 ---g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 564 (881)
.+-+-|++++++|. .+|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23456889999997 77999999999999998877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.22 Score=53.78 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEKK-------DLITWNSMISGYGM---NGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~~-------d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
.++-.|....+++.-.++.+.+... ....--...-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455677778888888888877653 11122223344455 6788888888888666556777777777766
Q ss_pred HHHcc---------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH----HHHH---Hh-C------CCC
Q 002790 522 ACSHA---------GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEA----SDIV---KN-M------PME 578 (881)
Q Consensus 522 a~~~~---------g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA----~~l~---~~-m------~~~ 578 (881)
.|-.. ...++|...|.+.- .+.|+..+--.++-.+.-.|...+. .++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65421 23667777776554 5556543333333344444432221 1211 00 0 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 579 PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 579 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
.|-..+.+++.++.-.|+.+.|.+.++++....|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 44556667777777777777777777777777655
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.029 Score=59.17 Aligned_cols=129 Identities=11% Similarity=0.121 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 002790 514 VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGR-AGLLQEASDIVKNM--PMEPNAYVWGTLLNS 590 (881)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~l~~~m--~~~pd~~~~~~Ll~~ 590 (881)
.+|..++....+.+..+.|..+|.+..+.. ..+..+|......-.+ .++.+.|.++|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888999999999999999998332 2234556666665445 46666699999987 344567889999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 591 CRMHKNTDVAEAMASQIFGLITETT---GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
+...++.+.|..+|++++...|.+. ..|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877655 58889999999999999999999988774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.052 Score=48.67 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNM---PMEPN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE---TTGSYMLLSNIYAA 627 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m---~~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 627 (881)
..++-..|+.++|+.+|++. +.... ...+..+.+.++..|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34445555666666655544 11111 235556666777788888888888877777666 55566667777888
Q ss_pred cCCHHHHHHHHHHHH
Q 002790 628 SGRWEDAAKVRISAK 642 (881)
Q Consensus 628 ~g~~~eA~~~~~~m~ 642 (881)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888887765443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0079 Score=48.02 Aligned_cols=61 Identities=15% Similarity=0.303 Sum_probs=37.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 002790 524 SHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTL 587 (881)
Q Consensus 524 ~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~L 587 (881)
...|++++|.++|+++.+. .| +...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3567777777777777633 44 3556666677777777777777777766 344554444333
|
... |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0051 Score=54.87 Aligned_cols=75 Identities=28% Similarity=0.427 Sum_probs=56.0
Q ss_pred cceeEEEcCeEEEEeeccCCCcchHHHHHHHHHHHHHHHHcCCcCCcchhhHhhhccccchhHHHhhhhhhhhhhhhcCc
Q 002790 651 GQSWIEVKRKIHMFSSGNSLQSDLKNVCEVLEELALQMENKGCVPDNDIILWEMMGKKNVKRIQRIRADNIKSKHRIVGF 730 (881)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (881)
|++|++. |.|++|+..||+. ++..+|...|+.|++..+.++..++..... .-.++.....+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-------d~~~~~~~~~~ 62 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDY-------DEEEKEESLCY 62 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhc-------ccccchhhhhc
Confidence 5788876 9999999999986 466778889999999998876665422111 11245568899
Q ss_pred cchHHHHHHHhhhc
Q 002790 731 RNLKLGLRLLLSLR 744 (881)
Q Consensus 731 ~~~~~~~~~~~~~~ 744 (881)
|+|++|.++.+...
T Consensus 63 HSEKlAiafgli~~ 76 (116)
T PF14432_consen 63 HSEKLAIAFGLINT 76 (116)
T ss_pred cHHHHHHHhcccce
Confidence 99999999986543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0038 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.3
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHH
Q 002790 604 ASQIFGLITETTGSYMLLSNIYAASGRWEDAA 635 (881)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 635 (881)
|+++++++|.++..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=3.5 Score=46.99 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=82.3
Q ss_pred cCChHHHHHHHhhcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 002790 184 MGQMSDSFKLFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGL--EPNFVTWTSLLSSHARCGRLEETMDLFD 261 (881)
Q Consensus 184 ~g~~~~A~~l~~~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~ 261 (881)
.|++++|++++-.+..+|. .|..+.+.|++-...++++.=- .+. ..-...|+.+...+.....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888777654 2444455566655555553211 000 0112346666666666666666666664
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHH
Q 002790 262 MMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSW 341 (881)
Q Consensus 262 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 341 (881)
.-... ...+.++.+...++.-+.+. ..++.+....-.+.+++...|.-++|.+.|-+-..|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 43211 11122233322222222221 2245566666677778888888888777776655442
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 002790 342 NALITSYAEAGLCDEAVEVFSQ 363 (881)
Q Consensus 342 ~~li~~~~~~g~~~~A~~l~~~ 363 (881)
+.+..|...++|.+|.++-+.
T Consensus 883 -aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 234445555666666655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.37 Score=42.93 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=87.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 002790 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEA 568 (881)
Q Consensus 489 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 568 (881)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..+.++.+-+-+.+.|- .-...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457778888888887764 24445555555444555556666677666433322221 112344555555443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc
Q 002790 569 SDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLK 647 (881)
Q Consensus 569 ~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~ 647 (881)
+......-+......|+-|.-.+++..+.+.+..+|....-++.+|.+.|+..++-++++++-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666777889999999999999998777778999999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.014 Score=46.70 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCC
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHK-NTDVAEAMASQIFGLIT 612 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g-~~~~A~~~~~~~~~~~p 612 (881)
+..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666666666666666666655 3334 3456777777777777 68888888888887776
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.68 Score=43.95 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHhCC------CCCCH
Q 002790 509 FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIE-PQMEHYACMVDLLGRAGLLQEASDIVKNMP------MEPNA 581 (881)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~eA~~l~~~m~------~~pd~ 581 (881)
..|+...-..|..+....|+..+|...|++.. . |+- -|....-.+.++....+++.+|...+++.. ..||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 36777777778888888899999999888876 3 443 356677778888888889988888887762 2244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
....+...+...|.+.+|+..++.+...-|. +..-......+.++|+.++|..-+..+.+.
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3345667788899999999999999988765 456667788889999999888776665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.041 Score=57.10 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=47.4
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCH
Q 002790 560 GRAGLLQEASDIVKNM-PMEPNA----YVWGTLLNSCRMHKNTDVAEAMASQIFGLITET---TGSYMLLSNIYAASGRW 631 (881)
Q Consensus 560 ~~~g~~~eA~~l~~~m-~~~pd~----~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 631 (881)
.+.|++++|...|+.. ...|+. ..+.-+...+...|++++|...|+.+++..|.+ +..+..++.+|.+.|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3444555555444444 112221 244445555666666666666666666665553 34444556666677777
Q ss_pred HHHHHHHHHHHhC
Q 002790 632 EDAAKVRISAKTK 644 (881)
Q Consensus 632 ~eA~~~~~~m~~~ 644 (881)
++|.++++++.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.12 Score=46.32 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDG--VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLG 560 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~ 560 (881)
+..++-..|+.++|+.+|++..+.|..... ..+..+.+.+...|++++|..++++...++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667789999999999999998876553 3677788888899999999999998885431111 1222333445677
Q ss_pred HcCCHHHHHHHHHh
Q 002790 561 RAGLLQEASDIVKN 574 (881)
Q Consensus 561 ~~g~~~eA~~l~~~ 574 (881)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.99 Score=42.89 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=49.9
Q ss_pred CCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHHHHHH
Q 002790 409 VANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK-----DLITWNS 483 (881)
Q Consensus 409 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----d~~~~~~ 483 (881)
.|+...-..+-.+....|+..+|...|++...--+-.|..+.-.+.++....+++..|...++++-+- ...+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444444555555555555555555555555444445555555555555555555555555544321 2223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 002790 484 MISGYGMNGLGENALATFEEMIEA 507 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~ 507 (881)
+.+.+...|++.+|..-|+...+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 444555555555555555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.5 Score=49.38 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=108.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhhCCCCCCCCHhHHHHHH----HHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 002790 65 LAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSIL----RVNVSNGLYENALKLYVKMRKLGVLGDGFTFPLVIR 140 (881)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 140 (881)
....-|..+.+...++-|..+-..-.. +...-..+. +-+.+.|++++|...|-+-... +.| ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 344557777777888888888765543 233323333 3455689999999888776543 233 23444
Q ss_pred HHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCee--hHHHHHHHHHhCCCh
Q 002790 141 ACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNYI--SWNMMFSGFALNFDC 218 (881)
Q Consensus 141 a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~--~y~~li~~~~~~g~~ 218 (881)
-+-....+..- -..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+.. -....+..+-+.+-.
T Consensus 406 kfLdaq~IknL----t~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNL----TSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHH----HHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChH
Confidence 44444444433 5666677777765 34445788899999999999888887776 3322 245556666666666
Q ss_pred hHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002790 219 DGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 219 ~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 264 (881)
++|..+-..... .... +--.+-..+++++|++.++.|.
T Consensus 480 ~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 666666554431 2222 2223456678888888887664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=4.4 Score=46.84 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGL 528 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (881)
+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+. + +.-|.-...+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhccc
Confidence 334444555666777777777777777777777777777777777766555544332 1 3456667777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 002790 529 VNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVK 573 (881)
Q Consensus 529 ~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~ 573 (881)
.++|.+++-+.. |.. -.+.+|.+.|++.+|.++--
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 777777766543 111 35666777777777766543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.27 Score=52.38 Aligned_cols=267 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCC
Q 002790 316 VYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGR 392 (881)
Q Consensus 316 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~ 392 (881)
.+-+..++..|+..+....+ | +..-|..-...+..-|++++|.--.++-.+.. +-....+.-.-+++...++
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-----d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-----DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC-----CCccccccchhhhhhhhHH
Confidence 44455556666666655443 2 34445555555666667776665555444322 1112233334444444555
Q ss_pred hHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCC-CCchhHHHHH-HHHHHhcCCHHHHHHHH
Q 002790 393 GEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSM-NKNILVQNGL-LNMYMKCGCLEEGHLVF 470 (881)
Q Consensus 393 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~-~~~~~~~~~L-i~~y~~~g~~~~A~~~~ 470 (881)
..+|...++.-. .+ ....+...++.+..... +|.-..+..| ..++.-.|+.++|..+-
T Consensus 133 ~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 555555444110 00 00011111111111111 1222333322 34555667777777666
Q ss_pred HhcccCCH-HHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHH---HH----------HHHccCCHHHHHH
Q 002790 471 EQIEKKDL-ITWNSMISGYG--MNGLGENALATFEEMIEAGFKPDGVAFVAV---LS----------ACSHAGLVNEGRR 534 (881)
Q Consensus 471 ~~m~~~d~-~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~----------a~~~~g~~~~A~~ 534 (881)
-.+.+-|. ..+...+++.+ -.++.+.|...|++.+.. .|+...-... .. -..+.|++..|.+
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 55554432 23333444433 356677777777777664 4554422221 11 2346789999999
Q ss_pred HHHHHHHhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 002790 535 IFDMMVREFRIEPQ-----MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNS--CRMHKNTDVAEAMASQ 606 (881)
Q Consensus 535 l~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~--~~~~g~~~~A~~~~~~ 606 (881)
.|.+.+ ++.|+ ...|........+.|+..+|+.--++. .+. +..++.-+..+ +...+++++|.+.+++
T Consensus 271 ~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 66665 455777777788999999999887766 333 23344444444 5567899999999999
Q ss_pred HhhcCCC
Q 002790 607 IFGLITE 613 (881)
Q Consensus 607 ~~~~~p~ 613 (881)
+.+....
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9887544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.037 Score=60.29 Aligned_cols=63 Identities=17% Similarity=-0.100 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 581 AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 581 ~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
...|+.+..+|...|++++|+..|+++++++|.+.. +|+.++.+|.+.|+.++|++.++++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555553 255555555556666665555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.56 Score=52.49 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHHhhCCC--C------CCCCHhHHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCC
Q 002790 60 NASAFLAARVLSIYARFGRLFDARNVFETAPF--D------CKSSSLLWNSILRVNVSNGL--YENALKLYVKMRKLGVL 129 (881)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 129 (881)
.|.+..+.+-+..|...|.+++|.++----.. . ..-+.-.++..=.+|.+-.+ +-+-+.-+++|+++|-.
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 34444455556667777888777654211000 0 00111223333344444333 22334445566666655
Q ss_pred CCcchHHHHHHHHHccCCcccc
Q 002790 130 GDGFTFPLVIRACKFMGSFRFR 151 (881)
Q Consensus 130 p~~~t~~~ll~a~~~~~~~~~a 151 (881)
|+... +...|+-.|++.+|
T Consensus 633 P~~iL---lA~~~Ay~gKF~EA 651 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEA 651 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHH
Confidence 65422 22335556666666
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.79 E-value=4.6 Score=45.65 Aligned_cols=412 Identities=12% Similarity=0.094 Sum_probs=213.4
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002790 203 ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSV 281 (881)
Q Consensus 203 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 281 (881)
..|+.+|..--...+.+.+...+..+... .|-..- |.....-=.+.|..+.+.++|++-.+. ++.+...+...+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 44555555444444445555566655544 455443 333333445566666677777665542 33333333333332
Q ss_pred Hh-ccccchhHHHHHHHHHhc-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHH---c----
Q 002790 282 CA-DLAADHMGKVIHGFVIKG-GF-EDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAE---A---- 351 (881)
Q Consensus 282 ~~-~~~~~~~a~~i~~~~~~~-g~-~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~---~---- 351 (881)
+. ..++.+..+..++..... |. -.....|...|..-..++++.....+++++.+-....++..-..|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 22 233444444444444332 21 12234556666666777888888888888877444444444333322 1
Q ss_pred --CChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHH-CCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchH
Q 002790 352 --GLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFAS-NGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAAL 428 (881)
Q Consensus 352 --g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 428 (881)
...+++.++-.............+....+..-+.--.. .+..+++.....+.. ..--..+......
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~ 271 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEE 271 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhH
Confidence 11222222222221100000000000011100000000 000111111000000 0000111111122
Q ss_pred HHHHHHHHHHHHcC---C----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHH
Q 002790 429 NIGREIHGHVVRVS---M----NKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENAL 498 (881)
Q Consensus 429 ~~a~~i~~~~~~~g---~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 498 (881)
...+..++.-++.- + .++..+|+..++.-.+.|+.+.+.-.|+++.-| -...|--.+.-....|+.+-|.
T Consensus 272 ~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~ 351 (577)
T KOG1258|consen 272 EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLAN 351 (577)
T ss_pred HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHH
Confidence 22222333332221 1 234577888888889999999999999998765 2345655555555668888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHH---HHHH
Q 002790 499 ATFEEMIEAGFKPDGVAFVAVLSA-CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEAS---DIVK 573 (881)
Q Consensus 499 ~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~---~l~~ 573 (881)
.++....+--++ +......+-.. +-..|+.+.|..+++.+..++ |+ ...-..-+....+.|..+.+. +++.
T Consensus 352 ~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 352 NVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred HHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHH
Confidence 777666554322 22222222222 445689999999999998653 66 333344566778899999888 5555
Q ss_pred hC-CCCCCHHHHHH----HHHH-HHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHH
Q 002790 574 NM-PMEPNAYVWGT----LLNS-CRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWE 632 (881)
Q Consensus 574 ~m-~~~pd~~~~~~----Ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (881)
.. ..+-+...... ...- +.-.++.+.|..++.++.+..|++...|..+++.....+...
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 44 22222222222 2222 455789999999999999999999999999998887776443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.019 Score=47.32 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc---CC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGL---IT----ETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+++.+...+...|++++|+..+++++++ .+ .-..++..++.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666677777777777777776644 22 1245778888889999999999888887653
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.2 Score=44.58 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
....+.+.|++++|...|+++......+ +--....-.++.++.+.|++++|...+++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNS--PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777888888888877755311 111234455667778888888888888877664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.24 Score=46.54 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+...++..+...|++++|..+++.++..+|-+...|..++.+|.+.|+..+|+++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35666777788999999999999999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.28 Score=50.48 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCCCHH-H
Q 002790 510 KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAG---LLQEASDIVKNM-PMEPNAY-V 583 (881)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g---~~~eA~~l~~~m-~~~pd~~-~ 583 (881)
+-|...|..|...|...|+.+.|...|.... .+.|+ +..+..+...+.... ...++.++|+++ ..+|+.. +
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4456678888888888888888888888777 34443 566666666654332 355777888877 5555554 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
..-|...+...|++.+|...++.+++..|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 44455558899999999999999999887765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.79 Score=45.92 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=72.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcC-----CCCchhHHHHHHH
Q 002790 381 SAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVS-----MNKNILVQNGLLN 455 (881)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g-----~~~~~~~~~~Li~ 455 (881)
+.++..+.-.|.+.-.+..+.+..+..-+.+......+.+.-.+.|+.+.+...++...+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444444455555555555544333444444455555555555555555555444321 2222222333334
Q ss_pred HHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002790 456 MYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAV 519 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 519 (881)
.|.-++++..|...|+++... |++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 555667777777777777643 4444444333344467778888888888775 4555444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.16 Score=52.80 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=64.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ----MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN----AYVWG 585 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd----~~~~~ 585 (881)
.|...+....+.|++++|...|+.+.+. .|+ ...+..+...|...|++++|...|+.+ ...|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3444443345557777777777777744 343 245566777777777777777777766 11222 33555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 586 TLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 586 ~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
.+...+...|+.+.|...++++++..|.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566667788999999999999988888765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.15 Score=54.48 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 581 AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 581 ~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+++.|..++.+.+++..|++.++++++..|+|.-..+.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4577888888999999999999999999999999999999999999999999999999988774
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=4 Score=40.46 Aligned_cols=194 Identities=19% Similarity=0.133 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002790 447 ILVQNGLLNMYMKCGCLEEGHLVFEQIEK-----KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLS 521 (881)
Q Consensus 447 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 521 (881)
..........+...+.+..+...+..... .....+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45566666777777888877777766542 2445566666667777778888888888876543331 22222222
Q ss_pred -HHHccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 002790 522 -ACSHAGLVNEGRRIFDMMVREFRIEP----QMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN--AYVWGTLLNSCRM 593 (881)
Q Consensus 522 -a~~~~g~~~~A~~l~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd--~~~~~~Ll~~~~~ 593 (881)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788889999988888752 333 2344445555577788899998888877 33333 5677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 594 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++++.+...+.......|.....+..+...+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999888876667777777777778889998888877654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.4 Score=44.01 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=89.8
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEK--K----DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDG--VAFVAVLSACSH 525 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~m~~--~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 525 (881)
...+...|++++|.+.|+.+.. | -....-.++.++-+.|++++|...+++.++. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3445566777777777777653 1 1234445666777777777787777777764 2332 122222222221
Q ss_pred -------------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 002790 526 -------------AGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVW--GTLLNS 590 (881)
Q Consensus 526 -------------~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~--~~Ll~~ 590 (881)
.+...+|...|+.+.+++ |+ .....+|...+..+. +...- ..+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~-------------S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRY---PN-------------SEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH----TT-------------STTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHC---cC-------------chHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 112344555555555332 33 223334433333321 11111 123455
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHcCCHHHHHH
Q 002790 591 CRMHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAASGRWEDAAK 636 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~ 636 (881)
|.+.|.+..|..-++.+++..|..+. ....++.+|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88999999999999999999888653 56688899999999885543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3 Score=41.62 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC----CCChhHHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRI----EPQMEHYACM 555 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~----~p~~~~~~~l 555 (881)
.|+--...|..+|.++.|-..+++.-+. ...-++++|+++|++...-... .--...|...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444556667777766666555554321 1223344555555544321100 1113345555
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCCcchHHHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNMP-------MEPNA-YVWGTLLNSCRMHKNTDVAEAMASQIFGL----ITETTGSYMLLSN 623 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m~-------~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~ 623 (881)
...|.+..+++||-..+.+-. .-|+. ..+...|-.+....|+..|+..++..-+. .|++..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 667778888888777665542 11333 23455555566677899999999886554 5667778888888
Q ss_pred HHHHcCCHHHHHHHHH
Q 002790 624 IYAASGRWEDAAKVRI 639 (881)
Q Consensus 624 ~~~~~g~~~eA~~~~~ 639 (881)
+| ..|+.+++.++..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 87 6788888877654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.3 Score=45.35 Aligned_cols=131 Identities=11% Similarity=0.000 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH---hcCC-CCChh
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMI----EAGFKP-DGVAFVAVLSACSHAGLVNEGRRIFDMMVR---EFRI-EPQME 550 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~---~~~~-~p~~~ 550 (881)
.|..|...|.-.|+++.|+...+.=+ +.|-+. ....+..+..++.-.|+++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666788888887654322 223221 223677788888888999999988876542 1111 12244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-------P-MEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-------~-~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
...+|.+.|.-...+++|+.++.+- . .--...++-+|..++...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667888888888899999888653 1 1123457778999999999999999988887654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.048 Score=39.13 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHH
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
.+|..+...+...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778888999999999999999999999999988877764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.9 Score=43.41 Aligned_cols=133 Identities=8% Similarity=-0.105 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHH-----HH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHY-----AC 554 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~-----~~ 554 (881)
.-+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|...|++..+..+ ..+-... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34556666666777778888888888876666777778888888888999988888887764432 2222222 22
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 555 MVDLLGRAGLLQEASDIVKNMPME--PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~~~--pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
....|.-++++.+|...+.+.... .|+...|.-.-+..-.|+...|++..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 223344455566666666555322 12233333333333445566666666666665554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.53 Score=49.24 Aligned_cols=163 Identities=10% Similarity=0.060 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC----hh
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIE-AGFKPD---GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ----ME 550 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~----~~ 550 (881)
..|..+.+++-+.-++.+++.+-+.-.. .|..|. .....++-.+....+.++++++.|+...+-..-.-| ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455556666555555566555444332 222231 112333445555566688888888877632211112 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCC--
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-------PMEPNA-----YVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITET-- 614 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~l~~~m-------~~~pd~-----~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~-- 614 (881)
+|..|...|.+..++++|.-+..+. +.+.-. .+...+.-+++..|....|.+.++++.++ ...|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6788888888888888776555443 322111 13334555688889999999999888765 3333
Q ss_pred --cchHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 615 --TGSYMLLSNIYAASGRWEDAAKVRISA 641 (881)
Q Consensus 615 --~~~~~~l~~~~~~~g~~~eA~~~~~~m 641 (881)
......++++|...|+.|.|..-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 344557888999999888887777654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=11 Score=43.19 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=20.1
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 002790 234 EPNFVTWTSLLSSHARCGRLEETMDLFDMM 263 (881)
Q Consensus 234 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 263 (881)
.|.+..|..+.....+.-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 567777877777666666666666666444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.14 Score=41.34 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=37.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchH
Q 002790 558 LLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSY 618 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 618 (881)
.|.+.+++++|.++++.+ ...| +...|......+...|++++|...++++.+..|.++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 455556666666666555 3333 334555566667777777777777777777777665443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.41 Score=43.40 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 002790 508 GFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDL 558 (881)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~ 558 (881)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777777777777777777777777777777777766666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.062 Score=44.14 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFG 609 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~ 609 (881)
++..+...+...|++++|++.++++.+
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666666665544
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.18 Score=47.31 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 002790 205 WNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK-----RGIEVGAEA 274 (881)
Q Consensus 205 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 274 (881)
...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566677888888888888887664 55667788888888888888888888887753 366666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.17 E-value=19 Score=44.22 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 002790 489 GMNGLGENALATFEEMIEAGFKPDGVAFVAVLSA----CSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGL 564 (881)
Q Consensus 489 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a----~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 564 (881)
-++|-+.+|+.++ +|+...+..+..+ |.....+++|--.|+..-+ ..--+.+|..+|+
T Consensus 919 ~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 919 KKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGD 980 (1265)
T ss_pred Hhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhcc
Confidence 3445555554443 4454444444433 3344555555555544320 0123455666777
Q ss_pred HHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Q 002790 565 LQEASDIVKNMPMEPNAYV--WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRIS 640 (881)
Q Consensus 565 ~~eA~~l~~~m~~~pd~~~--~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 640 (881)
+.+|+.+-.++...-|... -..|..-+...++.-+|-++..+..+. +.--...|+++..|++|+++-..
T Consensus 981 Wr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 981 WREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 7777777766644434332 255666677777666666665554331 22334456666777777776543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.25 Score=49.84 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred HHHHHhhcC--CCCeehHHHHHHHHHh-----CCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 002790 190 SFKLFDKVR--VKNYISWNMMFSGFAL-----NFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDM 262 (881)
Q Consensus 190 A~~l~~~m~--~~~~~~y~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 262 (881)
.++.|.... ++|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 344555555 5666777777776653 45677777888999999999999999999976654321
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHhhcc
Q 002790 263 MRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGD-VKVAQNLFSEIE 334 (881)
Q Consensus 263 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~~~~m~ 334 (881)
.|... |..++-.| -..-+-+..++++|..+|+.||..+-..|++++++.+- ..+..+++-.|+
T Consensus 123 ------iP~nv-fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 ------IPQNV-FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ------ccHHH-HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11111 11111111 12234456677777777777777777777777777665 334444444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=9.7 Score=40.72 Aligned_cols=245 Identities=19% Similarity=0.169 Sum_probs=158.5
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCch--hHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 002790 386 AFASNGRGEEALDLFRKMQLAKVVANS--VTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCL 463 (881)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 463 (881)
+-.-.|+++.|.+-|+.|... |.. --...|.-...+.|+.+.+.++-+..-..- +.-.-...+.+...|..|++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 344568888888888888642 221 122333334456788888887777665432 22345677888999999999
Q ss_pred HHHHHHHHhccc-----CCHH--HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHH
Q 002790 464 EEGHLVFEQIEK-----KDLI--TWNSMISGYGM---NGLGENALATFEEMIEAGFKPDGV-AFVAVLSACSHAGLVNEG 532 (881)
Q Consensus 464 ~~A~~~~~~m~~-----~d~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~A 532 (881)
+.|+++.+.-.. +++. .-..|+.+-+. .-+...|...-.+..+ +.||.+ .-..-..++.+.|++.++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 999999987543 3332 22333333222 2344555555444443 577765 344456678899999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002790 533 RRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM----PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~~ 607 (881)
-.+++.+- ...|.+.++...+ +.+.|+. +++-+++. ..+|| ..+...+..+....|++..|..-.+.+
T Consensus 283 ~~ilE~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999988 3466665554333 3455543 32222222 34454 456677778888999999999988888
Q ss_pred hhcCCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 002790 608 FGLITETTGSYMLLSNIYAAS-GRWEDAAKVRISAKTK 644 (881)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~m~~~ 644 (881)
....|.. .+|..|.++-... |+-.++...+.+..+.
T Consensus 356 ~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 356 AREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8887764 5888888887766 9999998888766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.06 E-value=11 Score=41.08 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=58.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhcCCCCe---ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHH
Q 002790 168 QGNVHIVNELIGMYAKMGQMSDSFKLFDKVRVKNY---ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLL 244 (881)
Q Consensus 168 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~---~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li 244 (881)
+.|...|-.||.-|...|..++.++++++|..|-+ .+|...+++-....++.....+|.+.....+ +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 55677888888888888889998999988887644 4688888877777888888888888876643 344455444
Q ss_pred HH
Q 002790 245 SS 246 (881)
Q Consensus 245 ~~ 246 (881)
+-
T Consensus 117 ~Y 118 (660)
T COG5107 117 EY 118 (660)
T ss_pred HH
Confidence 43
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.1 Score=49.35 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
|..+...+..+....++++.|...++++..++|..+.+|...+....-+|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555555555556666677777777777777777777777777777777777777777776444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.73 Score=49.36 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 002790 550 EHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 550 ~~~~~li~~~~~~g~~~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (881)
..+..+.-+|.+.+++.+|++.-++. ..+ +|....-.=..+|...|+++.|+..|++++++.|.|-.+-.-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45667777888888888888877766 333 4556666677889999999999999999999999999888888888888
Q ss_pred cCCHHHH-HHHHHHHHhC
Q 002790 628 SGRWEDA-AKVRISAKTK 644 (881)
Q Consensus 628 ~g~~~eA-~~~~~~m~~~ 644 (881)
..+.++. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7777655 7788888654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=12 Score=40.18 Aligned_cols=244 Identities=17% Similarity=0.140 Sum_probs=126.0
Q ss_pred HhcCCHHHHHHHHhhccC-CChh--HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChH
Q 002790 318 GKHGDVKVAQNLFSEIEE-KNIV--SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGE 394 (881)
Q Consensus 318 ~~~g~~~~A~~~~~~m~~-~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~ 394 (881)
.-.|+++.|.+-|+.|.. |... -...|.-.--+.|..+.|...-+.....- +.-.-.+...+...|..|+|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-----p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-----PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHhcCChH
Confidence 347999999999999985 3221 12223333345788888888777776643 233457888999999999999
Q ss_pred HHHHHHHHHHHCC-CCCchhH--HHHHHHHHhh---hchHHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHH
Q 002790 395 EALDLFRKMQLAK-VVANSVT--ISGLLSVCAE---SAALNIGREIHGHVVRVSMNKNILV-QNGLLNMYMKCGCLEEGH 467 (881)
Q Consensus 395 ~A~~l~~~m~~~g-~~p~~~t--~~~ll~~~~~---~g~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~ 467 (881)
.|+++.+.-+... +.++..- -..|+.+-+. ..+...+...-.+..+. .||..- --.-...|.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhh
Confidence 9999998776543 3444322 1223322211 12334444444333332 233211 111234556666666666
Q ss_pred HHHHhcccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 002790 468 LVFEQIEKK--DLITWNSMISGYGMNGLGENALATFEEMIE-AGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREF 543 (881)
Q Consensus 468 ~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~ 543 (881)
++++.+-+. ....+. +..+.+.| +.++.-+++... ..++||. .+...+..+-...|++..|..--+...
T Consensus 284 ~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--- 356 (531)
T COG3898 284 KILETAWKAEPHPDIAL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--- 356 (531)
T ss_pred hHHHHHHhcCCChHHHH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---
Confidence 666665432 222221 11222333 233333333221 1133433 244455555555566655555444443
Q ss_pred CCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 002790 544 RIEPQMEHYACMVDLLGRA-GLLQEASDIVKNM 575 (881)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~-g~~~eA~~l~~~m 575 (881)
...|....|..|.+.-... |+-.++...+.+.
T Consensus 357 r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 357 REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3455555555555544332 5555555555444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.42 Score=52.38 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAY----VWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~----~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555553 4444432 3556666666666666666666666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.43 E-value=5.3 Score=43.34 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAG---FKPDGVAFVAVLSACSH---AGLVNEGRRIFDMMVREFRIEPQMEHYA 553 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~ll~a~~~---~g~~~~A~~l~~~m~~~~~~~p~~~~~~ 553 (881)
+.-.++-+|....+++..+++.+.|.... +.-....-....-|+.+ .|+.++|++++..+... .-.+++++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33455667888999999999999998741 11122222334456667 89999999999985533 5567788888
Q ss_pred HHHHHHHH---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH----HHHhhc----C
Q 002790 554 CMVDLLGR---------AGLLQEASDIVKNM-PMEPNAYVWGTLLNSCRMHKN-T---DVAEAMA----SQIFGL----I 611 (881)
Q Consensus 554 ~li~~~~~---------~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~~~~~g~-~---~~A~~~~----~~~~~~----~ 611 (881)
.+...|-. ...+++|.+.|.+. ..+||...=..++......|. . .+..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88776642 22478899999887 666765543333333333332 1 1222222 111111 1
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 612 TETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 612 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
-.+-..+.++..+..-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223445568889999999999999999999865
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.1 Score=40.73 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH--------------HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 002790 513 GVAFVAVLSACSHAGLVNEGRRIFDMMV--------------REFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM--- 575 (881)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~A~~l~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m--- 575 (881)
..++..++.++++.|+++....+++..- ....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 12244566666666666666666666666666554
Q ss_pred -CCCCCHHHHHHHHHHH
Q 002790 576 -PMEPNAYVWGTLLNSC 591 (881)
Q Consensus 576 -~~~pd~~~~~~Ll~~~ 591 (881)
+++-+...|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 4444455666666554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.06 E-value=3.3 Score=42.72 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCH
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGT---LLNSCRMHKNT 597 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~---Ll~~~~~~g~~ 597 (881)
.....|+..+|..+|+..... .|+ ...--.++.+|...|+.++|..++..++.+-...-|.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456778888888888888733 333 56667788899999999999999999876543333333 12223333333
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 598 DVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 598 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
.+...+ ++-...+|+|...-..++..|...|+.++|.+.+-.+.++.
T Consensus 220 ~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222222 22233489999999999999999999999999888777654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=10 Score=37.47 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 002790 448 LVQNGLLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMIS-GYGMNGLGENALATFEEMIEAGFKP----DGVAFVAV 519 (881)
Q Consensus 448 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~l 519 (881)
..+..+...+...++...+.+.+...... +......... .+...|+.+.|...+++.... .| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHh
Confidence 33344444555555566666666655431 1122222223 577788888888888887552 33 23344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHK 595 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd-~~~~~~Ll~~~~~~g 595 (881)
...+...++.+.+...+....+ ..++ ...+..+...+...+.+++|...+... ...|+ ...+..+...+...+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 4446677888888888888873 3333 567788888888888889998888877 33444 445555555555777
Q ss_pred CHHHHHHHHHHHhhcCCC
Q 002790 596 NTDVAEAMASQIFGLITE 613 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~ 613 (881)
..+.+...+.+.....|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 899999999998888776
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.2 Score=39.23 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=58.0
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHH
Q 002790 556 VDLLGRAGLLQEASDIVKNMPM----E-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG---SYMLLSNIYAA 627 (881)
Q Consensus 556 i~~~~~~g~~~eA~~l~~~m~~----~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 627 (881)
.....+.|++++|.+.|+.+.. . -...+-..|+.++.+.+++++|...+++.++++|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3445567777777777776621 1 12346667788888899999999999999988887653 34444444555
Q ss_pred cCC---------------HHHHHHHHHHHHhC
Q 002790 628 SGR---------------WEDAAKVRISAKTK 644 (881)
Q Consensus 628 ~g~---------------~~eA~~~~~~m~~~ 644 (881)
... ..+|..-|+.+.++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 544 55666666665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.82 E-value=19 Score=41.03 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHhhccC--CChhHHHHHH-HHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHH
Q 002790 320 HGDVKVAQNLFSEIEE--KNIVSWNALI-TSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396 (881)
Q Consensus 320 ~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A 396 (881)
....+.|.++++.+.+ |+...|...- +.+...|+.++|++.|++...... ...+.....+--+.-.+.-..+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS-EWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh-hHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4567778888888776 6665554432 455667888888888886553211 11233344555666777888888888
Q ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHh-hhchH-------HHHHHHHHHHH
Q 002790 397 LDLFRKMQLAKVVANSVTISGLLSVCA-ESAAL-------NIGREIHGHVV 439 (881)
Q Consensus 397 ~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~-------~~a~~i~~~~~ 439 (881)
.+.|..+.+.. ..+..+|..+..+|. ..++. ++|.+++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888754 445555555544443 34545 66666666653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.77 Score=46.44 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=78.9
Q ss_pred HHHHHHhcc--cCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 002790 466 GHLVFEQIE--KKDLITWNSMISGYGMN-----GLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG----------- 527 (881)
Q Consensus 466 A~~~~~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 527 (881)
.++.|..+. ++|-.+|-+++..|... +.++-....++.|.+.|+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 56778888888887653 556667777899999999999999999998876542
Q ss_pred -----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 002790 528 -----LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQ 566 (881)
Q Consensus 528 -----~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 566 (881)
+-+=++.++++|. .+|+.||.++-..|++++++.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2344778999997 7899999999999999999988643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=13 Score=37.88 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 002790 345 ITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLA 406 (881)
Q Consensus 345 i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (881)
+..-.+.|++++|.+.|+.+..+...+ +-...+--.++.++.+.+++++|...+++....
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334455677777777777777654311 112344455566777777777777777776654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.72 E-value=17 Score=39.56 Aligned_cols=149 Identities=12% Similarity=-0.011 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--hhH
Q 002790 477 DLITWNSMISGYGMNGLGENALATFEEMIEAGFKP---DGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ--MEH 551 (881)
Q Consensus 477 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~--~~~ 551 (881)
...+|..++..+.+.|+++.|...+.++...+..+ +......-...+...|+..+|+..++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45678888888888999999998888887643211 2334444455566778888888888877741 11111 111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 002790 552 YACMVDLLGRAGLLQEASDI-VKNMPMEPNAYVWGTLLNSCRMH------KNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 552 ~~~li~~~~~~g~~~eA~~l-~~~m~~~pd~~~~~~Ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+++...|.++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 00000000011232333333333 788999999999999988887777777766
Q ss_pred HHHc
Q 002790 625 YAAS 628 (881)
Q Consensus 625 ~~~~ 628 (881)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 5443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.63 Score=41.37 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCC---cchHHHHHHHHHHcCCH
Q 002790 558 LLGRAGLLQEASDIVKNM-PM-EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL-ITET---TGSYMLLSNIYAASGRW 631 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~-~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~-~p~~---~~~~~~l~~~~~~~g~~ 631 (881)
++...|+++.|++.|.+. .. +.....||.-..+++-.|+.++|..-+++++++ .|.. ...|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 355666666666666655 22 234567788888888888888888888888877 3332 24577778888888888
Q ss_pred HHHHHHHHHHHhCC
Q 002790 632 EDAAKVRISAKTKG 645 (881)
Q Consensus 632 ~eA~~~~~~m~~~g 645 (881)
+.|..-|+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888777665
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.53 E-value=14 Score=39.12 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-------C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHH---
Q 002790 452 GLLNMYMKCGCLEEGHLVFEQIEK-------K--DLITWNSMISGYGMNGLGENALATFEEMIE----AGFKPDGVA--- 515 (881)
Q Consensus 452 ~Li~~y~~~g~~~~A~~~~~~m~~-------~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~t--- 515 (881)
++..++...+.++++.+.|+...+ + ....+..|...|.+..++++|.-+..+..+ .|+.--...
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555566666666655432 1 234566666777777777776655554432 222211112
Q ss_pred --HHHHHHHHHccCCHHHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 002790 516 --FVAVLSACSHAGLVNEGRRIFDMMVRE---FRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKN 574 (881)
Q Consensus 516 --~~~ll~a~~~~g~~~~A~~l~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~ 574 (881)
...+.-++...|.+.+|.+..++..+- .|-.+- .....++.+.|...|+.+.|+.-|++
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344566677777777776665532 122222 33445677778888887777766654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.44 E-value=29 Score=41.28 Aligned_cols=67 Identities=9% Similarity=-0.012 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHHhhCCC--CCCC--CHhHHHHHHHHHH-cCCChhHHHHHHHHHHh
Q 002790 51 HNQLIVTGANASAFLAARVLSIYARFGRLFDARNVFETAPF--DCKS--SSLLWNSILRVNV-SNGLYENALKLYVKMRK 125 (881)
Q Consensus 51 ~~~l~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~~n~li~~~~-~~g~~~~A~~l~~~m~~ 125 (881)
|.......-+.+...|..||.. |++.++.+.. ..+| +..++-.+...+. ...+++.|...+++...
T Consensus 18 ~~~~~~~~~~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~ 88 (608)
T PF10345_consen 18 HSLATKVKSEEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAIL 88 (608)
T ss_pred HHHHHhcCChhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333445566677777765 4555554442 2223 3445666777776 57889999999887654
Q ss_pred C
Q 002790 126 L 126 (881)
Q Consensus 126 ~ 126 (881)
.
T Consensus 89 l 89 (608)
T PF10345_consen 89 L 89 (608)
T ss_pred h
Confidence 4
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.42 E-value=10 Score=36.11 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred HHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccchhHHHHHHHHHhc
Q 002790 222 LELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAADHMGKVIHGFVIKG 301 (881)
Q Consensus 222 ~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 301 (881)
.+.++.+...|++|+...|..+++.+.+.|++.. +..+.+.++-+|.......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4555666678888988899999999999988654 4455566777776666544433322 122222222222221
Q ss_pred CCCCcHH-HHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 302 GFEDYVF-VKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 302 g~~~~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
.. .+..++..+...|++-+|.++.+.....+......++.+..+.++...-..+|+-..+
T Consensus 88 -----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 -----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 2334555666666666666666665443333344455555555554444444444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.33 E-value=4.7 Score=45.98 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHHH
Q 002790 527 GLVNEGRRIFDMMVREFRIEPQMEHYACM-VDLLGRAGLLQEASDIVKNMPM-E-----PNAYVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~eA~~l~~~m~~-~-----pd~~~~~~Ll~~~~~~g~~~~ 599 (881)
...+.|.++++.+.+. -|+...|... ...+...|++++|++.|++.-. + .....+--+...+....++++
T Consensus 247 ~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4577777788777733 4665554333 4556677888888888876521 1 112234445555677889999
Q ss_pred HHHHHHHHhhcCCCCcchHH-HHHHHHHHcCCH-------HHHHHHHHHHHhC
Q 002790 600 AEAMASQIFGLITETTGSYM-LLSNIYAASGRW-------EDAAKVRISAKTK 644 (881)
Q Consensus 600 A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~eA~~~~~~m~~~ 644 (881)
|...+.++.+...-+..+|. ..+-+|...|+. ++|.+++.+...-
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999887666655555 455556677888 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.05 E-value=38 Score=41.78 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCCh
Q 002790 314 ICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRG 393 (881)
Q Consensus 314 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~ 393 (881)
++.--+.|.+++|+.++.-=.+.--..|.+...-+...+.+++|.-.|+..-+. .--+.+|...|+|
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-------------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-------------EKALKAYKECGDW 981 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------HHHHHHHHHhccH
Confidence 333344555555555443322222233444444444556666665555543221 1235566667777
Q ss_pred HHHHHHHHHHHHCCCCCchh--HHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 002790 394 EEALDLFRKMQLAKVVANSV--TISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFE 471 (881)
Q Consensus 394 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 471 (881)
.+|+.+-.+|... -+.. +--.|..-+...++.-+|-++..+.... ..-.+..||+...+++|..+-.
T Consensus 982 r~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 982 REALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 7777777666321 1111 1133444455555555555554443321 1123445666666666666555
Q ss_pred hccc
Q 002790 472 QIEK 475 (881)
Q Consensus 472 ~m~~ 475 (881)
...+
T Consensus 1051 ~~~~ 1054 (1265)
T KOG1920|consen 1051 KAKR 1054 (1265)
T ss_pred hccc
Confidence 4443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.7 Score=44.37 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=55.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM----PMEPN-AYVWGTLL 588 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd-~~~~~~Ll 588 (881)
.|+.-+. +.+.|++.+|.+.|....+.+--.+ ....+--|..++...|++++|...|..+ +..|- +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444433 3345557777777766664431111 1334445666666666666666666555 22222 23445555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCcc
Q 002790 589 NSCRMHKNTDVAEAMASQIFGLITETTG 616 (881)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 616 (881)
.+..+.|+.++|...++++.+..|....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5566666777777777777666666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.76 E-value=6.5 Score=44.23 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred HHHhCCChhHHHHHHH--HhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccccc
Q 002790 211 GFALNFDCDGALELFK--RMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAAD 288 (881)
Q Consensus 211 ~~~~~g~~~~A~~l~~--~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 288 (881)
...-.|+++++.++.+ ++. ..+ | ....+.+++.+-+.|.++.|+++..+-..+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r---------------------- 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR---------------------- 324 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----------------------
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH----------------------
Confidence 3445677777766665 222 111 2 334777888888888888888876543322
Q ss_pred hhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcc
Q 002790 289 HMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLD 368 (881)
Q Consensus 289 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 368 (881)
.+...++|+++.|.++-++.. +...|..|.....+.|+++-|++.|.+...
T Consensus 325 -------------------------FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-- 375 (443)
T PF04053_consen 325 -------------------------FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-- 375 (443)
T ss_dssp -------------------------HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred -------------------------hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--
Confidence 233445666666666655543 444666666666666666666666655432
Q ss_pred CCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 002790 369 GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAK 407 (881)
Q Consensus 369 ~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (881)
|..|+-.|.-.|+.++-.++.+.....|
T Consensus 376 -----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 376 -----------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp -----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred -----------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 4445555556666555555554444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=8 Score=42.77 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHH
Q 002790 494 GENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIV 572 (881)
Q Consensus 494 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~ 572 (881)
..+|.++-++..+.+ +-|......+..+....++++.|..+|++.. .+.|| ..+|......+.-+|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555554 4445555555555555555666666666665 45555 333333333344444444444444
Q ss_pred Hh
Q 002790 573 KN 574 (881)
Q Consensus 573 ~~ 574 (881)
++
T Consensus 396 ~~ 397 (458)
T PRK11906 396 DK 397 (458)
T ss_pred HH
Confidence 44
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.54 E-value=62 Score=43.18 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
..+|-.......++|+++.|...+-+....--+..+.-...-.+..|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46777888888889999999887766532223456666777788999999999999998876
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.29 E-value=10 Score=35.09 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchhHHHHHHHH
Q 002790 342 NALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSVTISGLLSV 421 (881)
Q Consensus 342 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 421 (881)
..++..+.+.+........++.+...+ ..+...++.++..|++.+ ..+.++.++. ..+......+++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-----~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-----SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-----ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 345555555666666666666666544 245556666666666553 3344444432 1222333344555
Q ss_pred HhhhchHHHHHHHH
Q 002790 422 CAESAALNIGREIH 435 (881)
Q Consensus 422 ~~~~g~~~~a~~i~ 435 (881)
|.+.+.++++..++
T Consensus 79 c~~~~l~~~~~~l~ 92 (140)
T smart00299 79 CEKAKLYEEAVELY 92 (140)
T ss_pred HHHcCcHHHHHHHH
Confidence 55444444443333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.19 E-value=12 Score=38.67 Aligned_cols=154 Identities=13% Similarity=0.094 Sum_probs=98.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLL 565 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 565 (881)
......|+..+|..+|+...... .-+...-..+..+|...|+.+.|..++..+-.+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888877653 2234456677778888888888888887764221 011112223445666666666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHH-HHHHHHHH
Q 002790 566 QEASDIVKNMPMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGL--ITETTGSYMLLSNIYAASGRWED-AAKVRISA 641 (881)
Q Consensus 566 ~eA~~l~~~m~~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~m 641 (881)
.+...+-++....| |...-..+...+...|+.+.|...+=.++.. .-.+...-..|+..+.--|.-+. +..+.++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666665556 5566677777788888888888777766655 44456677777777777774443 33344433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.04 E-value=5.7 Score=42.05 Aligned_cols=134 Identities=7% Similarity=0.136 Sum_probs=75.1
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHh--c----CChHHHHHHHhhcCC-------CCeehHHHHHH
Q 002790 144 FMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAK--M----GQMSDSFKLFDKVRV-------KNYISWNMMFS 210 (881)
Q Consensus 144 ~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~--~----g~~~~A~~l~~~m~~-------~~~~~y~~li~ 210 (881)
...+++++++.+..+++.+.+.|+.-+.++|-+....... . .....|..+|+.|++ ++-.++..++.
T Consensus 70 ~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 70 SFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 3334566666666666666666666666555443332222 1 124456667776653 23345555544
Q ss_pred HHHhCCC----hhHHHHHHHHhHHcCCCCCHhH-HHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002790 211 GFALNFD----CDGALELFKRMELEGLEPNFVT-WTSLLSSHARCGR---LEETMDLFDMMRKRGIEVGAEAIAVVL 279 (881)
Q Consensus 211 ~~~~~g~----~~~A~~l~~~m~~~g~~pd~~t-y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 279 (881)
. ...+ .+.+..+|+.+.+.|+..+... +.+-+-++..... ..++.++++.+++.|+++....|..+-
T Consensus 150 ~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 150 M--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred c--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4 2233 2456777777887777665442 3333333332211 457788888888888887777765443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.03 E-value=9.8 Score=35.17 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=45.9
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002790 203 ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVC 282 (881)
Q Consensus 203 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 282 (881)
.....++..+...+.+.....+++.+...+ ..+...++.++..|++.. ..+..+.++. ..+......++..|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 344556666666677777777777776665 355556777777777653 3333344432 12223333445555
Q ss_pred hccccchhHHHHH
Q 002790 283 ADLAADHMGKVIH 295 (881)
Q Consensus 283 ~~~~~~~~a~~i~ 295 (881)
.+.+-++.+..++
T Consensus 80 ~~~~l~~~~~~l~ 92 (140)
T smart00299 80 EKAKLYEEAVELY 92 (140)
T ss_pred HHcCcHHHHHHHH
Confidence 5444444433333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.46 E-value=1 Score=43.23 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC
Q 002790 558 LLGRAGLLQEASDIVKNM-PMEP------NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGR 630 (881)
Q Consensus 558 ~~~~~g~~~eA~~l~~~m-~~~p------d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (881)
-+.+.|++++|..-|... ..-| ....|..-..+..+.+.++.|+.-+.++++++|........-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777776666554 1111 233455555667889999999999999999999988888888999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 002790 631 WEDAAKVRISAKTKG 645 (881)
Q Consensus 631 ~~eA~~~~~~m~~~g 645 (881)
+++|++-|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.35 E-value=26 Score=36.85 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHhhccC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhH
Q 002790 307 VFVKNALICVYGKHGDVK---VAQNLFSEIEE--KN-IVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISW 380 (881)
Q Consensus 307 ~~~~~~Li~~~~~~g~~~---~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y 380 (881)
..++..++.+|...+..+ +|.++++.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|...- .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-----~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-----DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-----ccccchH
Confidence 346677888888877654 45555555543 33 4455566677777888889999999988743 1133445
Q ss_pred HHHHHHH---HHCCChHHHHHHHHHHHHCCCCCch
Q 002790 381 SAVIGAF---ASNGRGEEALDLFRKMQLAKVVANS 412 (881)
Q Consensus 381 ~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 412 (881)
...+..+ .. .....|...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 5555444 33 3345666666666655555554
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.24 E-value=27 Score=36.78 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=12.0
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 002790 591 CRMHKNTDVAEAMASQIF 608 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~ 608 (881)
+.+.+++++|...|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456677777777777543
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.20 E-value=17 Score=40.37 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=65.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHH
Q 002790 515 AFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPM--EPNA--YVWGTLLNS 590 (881)
Q Consensus 515 t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~--~pd~--~~~~~Ll~~ 590 (881)
+-..+..++.+.|+.++|++.+++|.+++...-...+...|+.+|...+.+.++..++.+-.. -|.. .+|+..+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566667788999999999999986543222355677888999999999999998887731 1333 355554444
Q ss_pred HHHcCCH---------------HHHHHHHHHHhhcCCCCc
Q 002790 591 CRMHKNT---------------DVAEAMASQIFGLITETT 615 (881)
Q Consensus 591 ~~~~g~~---------------~~A~~~~~~~~~~~p~~~ 615 (881)
.+..++. ..|.+...++.+.+|--+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4433331 234566666666666443
|
The molecular function of this protein is uncertain. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=47 Score=39.51 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002790 307 VFVKNALICVYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEK 366 (881)
Q Consensus 307 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 366 (881)
...-...+..+.+.+++......+..- ..+...-.....+....|+.++|....+.+=.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333344455556667777666633222 23444444555666667776666555554433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=7.1 Score=40.78 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHhcccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHH--HHHHHHccCCHHHH
Q 002790 460 CGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVA--FVA--VLSACSHAGLVNEG 532 (881)
Q Consensus 460 ~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~--ll~a~~~~g~~~~A 532 (881)
.|+..+|-..++++.+. |...++--=++|.-.|+.+.-...+++..-. ..||... |.. +.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555432 5555555555566666655555555555532 2233321 111 12223345556666
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 002790 533 RRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 533 ~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m 575 (881)
.+.-++.. .+.| |.-.-.++...+...|++.++.+++.+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66555554 2333 2333344555555566666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=3 Score=43.41 Aligned_cols=158 Identities=11% Similarity=0.109 Sum_probs=112.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHHcCCH
Q 002790 490 MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYA----CMVDLLGRAGLL 565 (881)
Q Consensus 490 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 565 (881)
.+|+..+|...++++++. .+.|...+.-.=.+|...|+.+.-...++++.. ...||...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 467888888888888875 466677777778889999998888888888873 3356654433 344556688999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC----CcchHHHHHHHHHHcCCHHHHHHHHH
Q 002790 566 QEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE----TTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 566 ~eA~~l~~~m-~~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
++|++.-++. .+. .|...-.++.......++..++.++..+-...-.. -...|...+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988887 333 34455566666678888999998887775444221 12456677778888899999999998
Q ss_pred HHHhCCCccCC
Q 002790 640 SAKTKGLKKVA 650 (881)
Q Consensus 640 ~m~~~g~~~~~ 650 (881)
.-.-+.+.++.
T Consensus 272 ~ei~k~l~k~D 282 (491)
T KOG2610|consen 272 REIWKRLEKDD 282 (491)
T ss_pred HHHHHHhhccc
Confidence 75544444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.9 Score=42.71 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 002790 480 TWNSMISGYGMNGLGENALATFEEMIEAGFKPD----GVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYAC 554 (881)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~ 554 (881)
.|+.-+. +.+.|++.+|...|...++.. |+ ...+.-|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3554443 345666888888888887752 22 224556778888888888888888888877666665 577778
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 002790 555 MVDLLGRAGLLQEASDIVKNM 575 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m 575 (881)
|..+..+.|+.++|...|++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 888888888888888888777
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.70 E-value=15 Score=33.14 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
-++.+...|+-++-.+++.++...+ ++++.....+..||.+.|+..++.+++.++-
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3445555555555555555554322 4555555556666666666666666666555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=26 Score=35.72 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=91.7
Q ss_pred HHhcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcc---
Q 002790 457 YMKCGCLEEGHLVFEQIEKK------DLITWNSMISGYGMNGLGENALATFEEMIEAG-FKPDGVAFVAVLSACSHA--- 526 (881)
Q Consensus 457 y~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~--- 526 (881)
-.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.|| ..|...|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 34567777777777777542 22334444555666777777777777776642 2233 3344444444321
Q ss_pred ----CCH---HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCH
Q 002790 527 ----GLV---NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVW--GTLLNSCRMHKNT 597 (881)
Q Consensus 527 ----g~~---~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~--~~Ll~~~~~~g~~ 597 (881)
.+. .+|..-|+..+++ -||.. -..+|...+.... |.... .++..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 122 2333333444322 23311 0011111111110 11111 2334558889999
Q ss_pred HHHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 598 DVAEAMASQIFGLITETT---GSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 598 ~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
..|..-++++++.-|... ..+..+..+|.+.|..++|.+.-+-+.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999999998866554 345677888999999999988765443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.63 E-value=6.6 Score=44.15 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCh
Q 002790 415 ISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLG 494 (881)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 494 (881)
...++.-+.+.|..+.|.++... +. .-.+...++|+++.|.++.++.. +...|..|.+...+.|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 45555555566666666555322 11 12345567788888777665544 556788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 002790 495 ENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKN 574 (881)
Q Consensus 495 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~ 574 (881)
+-|.+.|++... |..|+--|.-.|+.+.-.++.+..... | -++....++.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888877776532 455555666677766666666555422 1 234444455556666666666665
Q ss_pred CC
Q 002790 575 MP 576 (881)
Q Consensus 575 m~ 576 (881)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=6.8 Score=37.02 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=42.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 002790 488 YGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQE 567 (881)
Q Consensus 488 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 567 (881)
+-..|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|.....- . .-|+..+--...+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 344566666666666555432 122223344444444455666666666554411 1 1123333344555666666666
Q ss_pred HHHHHHhC
Q 002790 568 ASDIVKNM 575 (881)
Q Consensus 568 A~~l~~~m 575 (881)
|.+.|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 66665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.45 E-value=53 Score=39.02 Aligned_cols=53 Identities=6% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 002790 555 MVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIF 608 (881)
Q Consensus 555 li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~ 608 (881)
++..+.+..+.+.+..+.+..+.. ++..|..+++.+.+.+..+.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 444556666677777777766544 66777777777777776555555555444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.21 E-value=2.4 Score=37.82 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcC
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM----PMEPN--AYVWGTLLNSCRMHK 595 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~l~~~m----~~~pd--~~~~~~Ll~~~~~~g 595 (881)
....|+++.|++.|.+.. .+.|. ...||.-..++.-+|+.++|++=+++. +-+-. -..|..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 344555555555555554 33332 455555555555555555555555443 11100 112333333466777
Q ss_pred CHHHHHHHHHHHhhcCC
Q 002790 596 NTDVAEAMASQIFGLIT 612 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p 612 (881)
+.+.|..-|+.+.++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766655533
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.95 E-value=10 Score=34.96 Aligned_cols=115 Identities=15% Similarity=0.025 Sum_probs=61.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGF--KPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRA 562 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~ 562 (881)
.....+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++-+--.|+ .-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344556777777777777766410 111235566677777777777777777777743222222 3344444444332
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCc
Q 002790 563 GLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 563 g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 615 (881)
...+..+.-+- ..+ +..+....|...++++++..|.+.
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22221111111 111 122345678888888888888865
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.77 E-value=20 Score=35.30 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 002790 478 LITWNSMISGYGMNGLGENALATFEEMIEAGFKPDG-VAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMV 556 (881)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li 556 (881)
...||-+.--+...|+++.|.+.|+...+.. |.- .++..-.-++.-.|++.-|.+=+...-+ -.|+..--...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 3456666666666777777777777766643 221 1111111123345666666655444432 233211111111
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCCC-------cchHHHHHHHHHHc
Q 002790 557 DLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRM-HKNTDVAEAMASQIFGLITET-------TGSYMLLSNIYAAS 628 (881)
Q Consensus 557 ~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~-~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 628 (881)
-.-.+.-++.+|..-+.+--...|..-|...|-.+.- +=..+ .+++++.+...++ ..+|..|+.-|...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1122333455555443332222344445444443221 11111 2222222221111 36899999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 002790 629 GRWEDAAKVRISAKTKG 645 (881)
Q Consensus 629 g~~~eA~~~~~~m~~~g 645 (881)
|+.++|..+|+.....+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999776654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.84 Score=30.93 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002790 617 SYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 617 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=35 Score=35.92 Aligned_cols=203 Identities=7% Similarity=0.027 Sum_probs=91.7
Q ss_pred CChhhHHHHHHHHHHCCCh----HHHHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHH--HHHHHHHHHHHcCCCCchh
Q 002790 375 PNVISWSAVIGAFASNGRG----EEALDLFRKMQLAKVVANSVTISGLLSVCAESAALN--IGREIHGHVVRVSMNKNIL 448 (881)
Q Consensus 375 p~~~~y~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~i~~~~~~~g~~~~~~ 448 (881)
+|...-...+.++.+.|+. +++...+..+... .|+...-...+.++...+... ............-..++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~ 143 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTN 143 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHH
Confidence 3444444455555555543 3455555555332 334333333333333322110 0011112222222233445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 002790 449 VQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNG-LGENALATFEEMIEAGFKPDGVAFVAVLSACSHAG 527 (881)
Q Consensus 449 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (881)
+-...+.++.+.|+.+....+..-+..+|...-..-+.++.+.+ +...+...+..+.. .+|...-...+.++.+.|
T Consensus 144 VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 144 VRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccC
Confidence 55555666666665443333333444445444444444555432 23455555555553 445556666666666666
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 002790 528 LVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNAYVWGTLLNS 590 (881)
Q Consensus 528 ~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m-~~~pd~~~~~~Ll~~ 590 (881)
+. .+...+-+..+. ++ .....+.+++..|.. +|...+.++ ...||..+-...+.+
T Consensus 221 ~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 221 DK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred Ch-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 63 444444444321 12 223455566666664 455555554 234455544443333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.35 E-value=16 Score=34.89 Aligned_cols=132 Identities=9% Similarity=0.062 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHccCCcccccchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHHh
Q 002790 118 KLYVKMRKLGVLGDGFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMG--QMSDSFKLFD 195 (881)
Q Consensus 118 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~l~~ 195 (881)
+.++.+.+.|++|+...|..+++.+.+.+... .+.+++..++-+|.......+-.+.... -..-|.+++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~--------~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS--------QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHH
Confidence 44555556677777777777777777766532 3344444454444443333222222111 0122223333
Q ss_pred hcCCCCeehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002790 196 KVRVKNYISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRK 265 (881)
Q Consensus 196 ~m~~~~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 265 (881)
++. ..+..++..+...|++-+|+++.+.... -+......++.+..+.++...-..+|+-..+
T Consensus 87 RL~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 2345555566666666666666655421 1222224455555555554444444443333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=64 Score=38.43 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=24.6
Q ss_pred HHHHHhcCCHHHHHHHHhhccC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 002790 314 ICVYGKHGDVKVAQNLFSEIEE--K-NIVSWNALITSYAEAGLCDEAVEVFSQL 364 (881)
Q Consensus 314 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 364 (881)
+..-.+.++++.+...+..|.. . ...-..-+.+++...|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333455566666555555543 1 1112223344444456666666555554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.03 E-value=1 Score=46.76 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCC
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEP-QMEHYACMVDLLGRAGLLQEASDIVKNMP-ME-PNAYVWGTLLNSCRMHKN 596 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~l~~~m~-~~-pd~~~~~~Ll~~~~~~g~ 596 (881)
..-|.+.|.+++|+..|.... .+.| +++++..-..+|.+..++..|+.-.+..- .. --...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456778888999998888776 5677 78888888888888888887765444331 11 012244444444455678
Q ss_pred HHHHHHHHHHHhhcCCCCc
Q 002790 597 TDVAEAMASQIFGLITETT 615 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~ 615 (881)
..+|.+-++.++++.|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8888888888888888854
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.96 E-value=1 Score=29.85 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
+|..+...+...|++++|+..++++++++|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555666666666665555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.4 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 584 ~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
|..+...+...|++++|++.++++++++|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444444555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.59 E-value=19 Score=33.97 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMPM-EPNAYVWGTLLNSCRMHKNTDVA 600 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~l~~~m~~-~pd~~~~~~Ll~~~~~~g~~~~A 600 (881)
-.+.++.+++..+++.+. -+.|.. ..-..-...+.+.|++.+|..+|+++.. .|....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345677888888888876 567763 3333344557788888888888888843 35555556666666655444444
Q ss_pred HHHHHHHhhcCC
Q 002790 601 EAMASQIFGLIT 612 (881)
Q Consensus 601 ~~~~~~~~~~~p 612 (881)
....+++.+..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 445555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.52 E-value=19 Score=34.18 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCchh-HHHHHHHH--Hhh
Q 002790 348 YAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKVVANSV-TISGLLSV--CAE 424 (881)
Q Consensus 348 ~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~ 424 (881)
+.+.+..++|+.-|..+.+.|.++ .| +-.-.-+.....+.|+...|...|.+.-...-.|-.. -...|=.+ +..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~--Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS--YP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc--ch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 355677777888887777766311 11 1111222344567778888888888776554444332 11111111 223
Q ss_pred hchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 002790 425 SAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIE 474 (881)
Q Consensus 425 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 474 (881)
.|.++....-.+.+...+-+.....-.+|.-+-.+.|++.+|.+.|..+.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44444444444333333333333333444444445555555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.98 Score=32.21 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC
Q 002790 100 WNSILRVNVSNGLYENALKLYVKMRKL 126 (881)
Q Consensus 100 ~n~li~~~~~~g~~~~A~~l~~~m~~~ 126 (881)
|..+..+|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.09 E-value=80 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002790 561 RAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAE 601 (881)
Q Consensus 561 ~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~ 601 (881)
+.+++++|+++.++- .|...|..||+-+...-.+-.+.
T Consensus 673 el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence 334555555555443 47778888887776554444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.70 E-value=41 Score=33.67 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHhhccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHH
Q 002790 316 VYGKHGDVKVAQNLFSEIEEKNIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEE 395 (881)
Q Consensus 316 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~ 395 (881)
.++-.+++++|-++|.+.. +.|-..++|..|-..|-+..+...+.+.+.|..+--.-..-+.+..++.+
T Consensus 23 lfgg~~k~eeAadl~~~Aa-----------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~e 91 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA-----------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEE 91 (288)
T ss_pred ccCCCcchHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHH
Confidence 3444567888888877653 22333333333333333332221111123333332222333445557888
Q ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHhhhchHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcc
Q 002790 396 ALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKC-GCLEEGHLVFEQIE 474 (881)
Q Consensus 396 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~~~~m~ 474 (881)
|...++... ..+...|++..|-..+..+-+ .|-.. .++++|+..|+..-
T Consensus 92 Av~cL~~ai---------------eIyt~~Grf~~aAk~~~~iaE---------------iyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 92 AVNCLEKAI---------------EIYTDMGRFTMAAKHHIEIAE---------------IYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHHHHHHH---------------HHHHhhhHHHHHHhhhhhHHH---------------HHhhhHHHHHHHHHHHHHHH
Confidence 777776543 446667777766665544322 22222 34444444444432
Q ss_pred c------CCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 002790 475 K------KDLITWNSM---ISGYGMNGLGENALATFEEMIEAGFKPDG 513 (881)
Q Consensus 475 ~------~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 513 (881)
+ .+...--.+ ..--+..+++.+|+++|++.....+..+.
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 1 111111112 22234567889999999988876544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=85.04 E-value=34 Score=38.20 Aligned_cols=145 Identities=13% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccc
Q 002790 208 MFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSVCADLAA 287 (881)
Q Consensus 208 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 287 (881)
+|...=+..+++.-.+.-++..+. .||-.+.-.++ +--......++.++|++..+.|- ..+.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----------~~lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----------ASLGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----------Hhhchhhh
Confidence 333334556666666666666544 45443322121 22234557888888888766541 01111100
Q ss_pred chhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhccC--CC---hhHHHHHHHHHHHcCChHHHHHHHH
Q 002790 288 DHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEE--KN---IVSWNALITSYAEAGLCDEAVEVFS 362 (881)
Q Consensus 288 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~ 362 (881)
.+..-..++........+-..+-..|..+.-+.|+.++|.+.|++|.+ |. ......++.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111011112222222233344445566677778888888888888864 22 2356678888888888888888888
Q ss_pred HHHH
Q 002790 363 QLEK 366 (881)
Q Consensus 363 ~m~~ 366 (881)
+-.+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7654
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.12 E-value=8.1 Score=40.14 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCCCCchhH
Q 002790 340 SWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQL-----AKVVANSVT 414 (881)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 414 (881)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 44455555666666666666666666644 45666777777777777777777777766643 466665554
Q ss_pred HHHH
Q 002790 415 ISGL 418 (881)
Q Consensus 415 ~~~l 418 (881)
....
T Consensus 230 ~~~y 233 (280)
T COG3629 230 RALY 233 (280)
T ss_pred HHHH
Confidence 4333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.70 E-value=50 Score=35.87 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 580 NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLIT----ETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 580 d~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
...+|..+...+++.|+++.|...+.++....+ ..+.+...-+..+...|+.++|+..++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999987642 246677788999999999999999998887743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.20 E-value=37 Score=32.33 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002790 212 FALNFDCDGALELFKRMELEGLEPNFVT-WTSLLSSHARCGRLEETMDLFDMMRKRGIEV 270 (881)
Q Consensus 212 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 270 (881)
+++.+..++|+.-|.++.+.|...=... ---+.....+.|+...|...|.+.-...-.|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 3566667777777777776553321111 1112233456677777777777766554334
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.09 E-value=7.9 Score=40.14 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=67.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhcCC-CCe-----ehHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCHh
Q 002790 165 MGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVRV-KNY-----ISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFV 238 (881)
Q Consensus 165 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-~~~-----~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 238 (881)
.|.+....+...++..-....+++++...+-++++ ++. .+-.+.++ ++-.-++++++.++..=...|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34455555666666665666778888877766653 211 11111222 223346778888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002790 239 TWTSLLSSHARCGRLEETMDLFDMMRKRG 267 (881)
Q Consensus 239 ty~~li~~~~~~g~~~~A~~l~~~m~~~g 267 (881)
+++.+|+.+.+.+++.+|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.05 E-value=22 Score=37.69 Aligned_cols=130 Identities=10% Similarity=0.175 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--ccCCcccccchHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCh
Q 002790 113 YENALKLYVKMRKLGVLGDGFTFPLVIRACK--FMGSFRFRFSFGQIVHNHVLQMGF---QGNVHIVNELIGMYAKMGQM 187 (881)
Q Consensus 113 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~m~~~g~---~~~~~~~~~Li~~~~~~g~~ 187 (881)
+++.+.+++.|++.|+.-+.++|-+..-... ...+.+.-...+..+++.|.+... .++-.++..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 3455678888899888888887766443333 344555555556889999988753 3455566666554 33333
Q ss_pred ----HHHHHHHhhcCC-----CCeehHHHHHHHHHhCCC---hhHHHHHHHHhHHcCCCCCHhHHHHHH
Q 002790 188 ----SDSFKLFDKVRV-----KNYISWNMMFSGFALNFD---CDGALELFKRMELEGLEPNFVTWTSLL 244 (881)
Q Consensus 188 ----~~A~~l~~~m~~-----~~~~~y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~ty~~li 244 (881)
+.+..+|+.+.. .|..-+.+-+-++..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345555555543 233333333333332221 457889999999999998888877654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.84 E-value=57 Score=32.97 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHH
Q 002790 379 SWSAVIGAFASNGRGEEALDLFRKM 403 (881)
Q Consensus 379 ~y~~li~~~~~~g~~~~A~~l~~~m 403 (881)
.|+--...|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4445555666666666665555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=82.75 E-value=2.2 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 583 ~~~~Ll~~~~~~g~~~~A~~~~~~~~~~ 610 (881)
+|..|...|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888885543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.42 E-value=56 Score=32.79 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=15.9
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCC
Q 002790 591 CRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~ 613 (881)
-...+++.+|+.+|+++....-+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35567888888888887655333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.90 E-value=5.9 Score=41.15 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++..++..+...++++.+...++++.+.+|-+...|..++.+|.+.|+...|+..|+.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456677777888889999999999999999999999999999999999999999999988763
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.86 E-value=8.4 Score=36.24 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 002790 591 CRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 591 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
-.+.++.++++.++..+.-+.|..+..-..-+..+.+.|+|.+|..+++.+.+..
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4567788899999998888889888888888888999999999999999887654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.78 E-value=7.9 Score=35.78 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=48.8
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 002790 592 RMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGL 646 (881)
Q Consensus 592 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~ 646 (881)
...++.++++.+++.+.-+-|..+..-..-+..+.+.|+|+||.++++...+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 4588999999999999999999998888999999999999999999998887653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.32 E-value=18 Score=40.99 Aligned_cols=149 Identities=19% Similarity=0.077 Sum_probs=103.8
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 002790 458 MKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFD 537 (881)
Q Consensus 458 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~ 537 (881)
.-.|+++.|..++..+.++ ..+.++.-+.+.|-.++|+++ .+|..-.- ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHH
Confidence 3457777777777666632 334455666677777777654 33333211 22346789999988877
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCcch
Q 002790 538 MMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 538 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+.+...+....|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 653 56779999999999999999999998753 366777777778887776666666665544443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 002790 618 YMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 618 ~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
-..+|...|+++++++++.
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHH
Confidence 3356778999999998876
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.20 E-value=2.8 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+..++.+|.+.|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999988653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.10 E-value=1.2e+02 Score=35.54 Aligned_cols=79 Identities=13% Similarity=-0.015 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc---CCHHHHHH
Q 002790 564 LLQEASDIVKNMPMEPNAYVWGTLLNSCRM----HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS---GRWEDAAK 636 (881)
Q Consensus 564 ~~~eA~~l~~~m~~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~eA~~ 636 (881)
+.+.+..++.+...+-+......|-..|.. ..+.+.|...|.++.+.. ......++.++.+- ..+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 445555666655444445555555544432 246778888887776665 56666777776543 12678888
Q ss_pred HHHHHHhCC
Q 002790 637 VRISAKTKG 645 (881)
Q Consensus 637 ~~~~m~~~g 645 (881)
+++...+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 888776643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.71 E-value=3 Score=27.51 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 002790 616 GSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 616 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999988763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 69/531 (12%), Positives = 152/531 (28%), Gaps = 135/531 (25%)
Query: 2 RHSLLHQPHQFSPSNPSRPFSIITYNNSLLDCFDHLLQQCKTIHQLKQVHNQLIV----T 57
R L + F+ N SR + +LL +L+ + ++
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALL--------------ELR--PAKNVLIDGVL 159
Query: 58 GANASAFLAARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENAL 117
G+ + +A V Y + D +F W ++ N + E
Sbjct: 160 GSGKTW-VALDVCLSY-KVQCKMD-FKIF-------------WLNLKNCNSPETVLEMLQ 203
Query: 118 KLYVKMRK-LGVLGDG-FTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVN 175
KL ++ D L I + + R + + L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCL------------ 247
Query: 176 ELIGMYAKMGQMSD-----SFKLFD---KV----RVKN-----------YISWNMMFSGF 212
L+ + + ++ F+ K+ R K +IS +
Sbjct: 248 -LV--------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 213 ALNFDCDGALELFKR---MELEGLEPNFVTWTSLLSSHARCG-RLEETMDLFDMMRKRGI 268
D L + + L P V T+ + + + + +D +
Sbjct: 299 TP----DEVKSLLLKYLDCRPQDL-PREVLTTNPR-RLSIIAESIRDGLATWDNWKH--- 349
Query: 269 EVGAEAIAVVLSVCAD-LAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQ 327
V + + ++ + L K+ + F + L+ +
Sbjct: 350 -VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 328 NLFSEIEEKNIV-SWNALITSY-------------AEAGLCDEAVEVFSQLEKLDGGSME 373
+ +++ + ++V T E L V+ ++ + D +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 374 RPNVIS-WSAVIGAFASNGRGEEALDLFRKMQL------AKVVANSVTISGLLSVCAESA 426
P + + + IG N E + LFR + L K+ +S + A +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS------TAWNASGS 519
Query: 427 ALNIGREIHGHVVRVSMNKNILVQ--NGLLNMYMKCG--CLEEGHLVFEQI 473
LN +++ + + N + N +L+ K + + +I
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 70/488 (14%), Positives = 143/488 (29%), Gaps = 142/488 (29%)
Query: 437 HVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGEN 496
+V R+ + + LL L V + G+ G G+
Sbjct: 130 NVSRLQPYLKL--RQALLE-------LRPAKNVL-------I---------DGVLGSGKT 164
Query: 497 ALAT---FEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVR-EFRIEP---QM 549
+A ++ + ++ + N + +M+ + ++I+P
Sbjct: 165 WVALDVCLSYKVQCKM-DFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 550 EHYACMVDLLGRAGLLQEA-SDIVKNMPMEPNAY-----VW-GTLLN----SCRM---HK 595
++ + L R +Q ++K+ P N V N SC++ +
Sbjct: 217 SDHSSNIKL--RIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 596 NTDVAEAMAS---------------------QIFGLITET----------TGSYMLLSNI 624
V + +++ + + T + LS I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 625 YAAS-----GRWEDAAKVRISAKTKGLKK-VAGQSWIEVKRKIHMFSSGNSLQSDLKNVC 678
A S W++ V T ++ + E ++ S
Sbjct: 334 -AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPT 389
Query: 679 EVLEELALQMENKGCVPDNDIILWEMMGKKNVKR-----------IQ---RIRADNIKSK 724
+L + + D +++ ++ V++ I +++ +N +
Sbjct: 390 ILLSLIWFDVIKS----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 725 HR-IVGFRNLKLGLRL--LLSLRSTN------GQLMKNKLKLGLVVFNLSLKLFNDAVTA 775
HR IV N+ L+ G +KN L +F D
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDF--- 500
Query: 776 TNRVISSDIRLE----NDSPHGLVLLRGLKVFDNFCNVTDTKQFMSVEELALAIMREIR- 830
R + IR + N S L L+ LK + + + D E L AI+ +
Sbjct: 501 --RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDP--KYERLVNAILDFLPK 554
Query: 831 -GENAVRS 837
EN + S
Sbjct: 555 IEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 6e-08
Identities = 67/423 (15%), Positives = 125/423 (29%), Gaps = 133/423 (31%)
Query: 1 MRHSLLHQPHQFSPSNPSRPFSIIT-----------------YNNSLL-----------D 32
M LL+Q S +I Y N LL +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 33 CFDHLLQQCKTI--HQLKQVHNQLIVTGA-------NASAFLAARVLSIYARFGRLFDAR 83
F+ CK + + KQV + L ++ V S+ ++
Sbjct: 261 AFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------- 310
Query: 84 NVFETAPFD-----CKSSSLLWNSI---LRVNVS---NGLYENALKLYVKMRK-LGVLGD 131
+ P D ++ + I +R ++ N + N KL + L VL
Sbjct: 311 --LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE- 367
Query: 132 GFTFPLVIRACKFMGSFRFRFSFGQIVHNHVLQMGFQGNVHIVNELIGM------YAKMG 185
P R F + F + HI L+ + + +
Sbjct: 368 ----PAEYRKM-----FD---RLS-V---------FPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 186 QMSDSFK---LFDKVRVKNYISWNMMFSGFALNFDCDGALELFKRM----------ELEG 232
+ + L +K ++ IS ++ L + L + + + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 233 LEPNFVT--WTSLLSSHARCGRLEETMDLFDMM--------RK-RGIEVGAEAIAVVLSV 281
L P ++ + S + H + E M LF M+ +K R A +L+
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 282 CADLAADHMGKVIHGFVIK--GGFEDYV-----FVKN-ALICVYGKHGD-VKVAQNLFSE 332
L K ++ +E V F+ + K+ D +++A L +E
Sbjct: 524 LQQL------KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA--LMAE 575
Query: 333 IEE 335
E
Sbjct: 576 DEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-06
Identities = 45/326 (13%), Positives = 99/326 (30%), Gaps = 86/326 (26%)
Query: 598 DVAEAMAS--------QIFGLITETTGSYMLL-------SNIYAASGRWEDAAKV----- 637
DV + S I +G+ L + E+ ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFL 94
Query: 638 --RISAKTKGLKKVAGQSWIEVKRKIHMFSSGNSLQSDLK-NVC-----EVLEELALQME 689
I + + + + +IE + +++ N Q K NV L + L++
Sbjct: 95 MSPIKTEQRQ-PSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 690 NKGCVPDNDIILWEMMGK-KNVKRIQRIRADNIKSKH--RI--VGFRNLKLGLRLLLSLR 744
P ++++ ++G K + + ++ K +I + +N +L L+
Sbjct: 149 -----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 745 STNGQLMKNKLKLGLVVFNLSLKLFNDAVTATNRVISSDIRLENDSPHGLVLLRG----- 799
Q+ N N+ L++ + R++ + L++L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLK-----SKPYENCLLVLLNVQNAK 257
Query: 800 -LKVFDNFC---------NVTD------TKQFMSVEEL-------ALAIMREIRGENAVR 836
F+ C VTD T +++ +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-- 315
Query: 837 SALPALVFTCSTS-LGCA-IATNSRN 860
LP V +T+ + IA + R+
Sbjct: 316 QDLPREV--LTTNPRRLSIIAESIRD 339
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 3e-09
Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 9/194 (4%)
Query: 396 ALDLFRKMQLAKVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455
A L + A ++ LL +L++ + G + ++
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 456 MYMKCGCLEEGHLVFEQIEKK-------DLITWNSMISGYGMNGLGENALATFEEMIEAG 508
+ L H + + L +N+++ G+ G + + + +AG
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 509 FKPDGVAFVAVLSACSHAGLVNEG-RRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQE 567
PD +++ A L R + M + ++ Q A ++ RA +L+
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 568 ASDIVKNMPMEPNA 581
+ + P
Sbjct: 255 VHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 8e-09
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 149 RFRFSFGQIVHNHVLQMGFQGNVHIVNELIGMYAKMGQMSDSFKLFDKVR-------VKN 201
+ Q Q G + Q+ + L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 202 YISWNMMFSGFALNFDCDGALELFKRMELEGLEPNFVTWTSLLSSHARCGRLEETM-DLF 260
+N + G+A + + ++ GL P+ +++ + L R + T+
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 261 DMMRKRGIEVGAEAIAVVLSVC 282
+ M + G+++ A AV+LS
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 15/139 (10%), Positives = 39/139 (28%), Gaps = 2/139 (1%)
Query: 337 NIVSWNALITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEA 396
A A + + + ++AV+ +A G +E
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKEL 184
Query: 397 LDLFRKMQLAKVVANSVTISGLLSVCA-ESAALNIGREIHGHVVRVSMNKNILVQNGLLN 455
+ + ++ A + + ++ + L + + + + L LL+
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244
Query: 456 MYMKCGCLEEGHLVFEQIE 474
+ L+ H V
Sbjct: 245 EEDRATVLKAVHKVKPTFS 263
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 881 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 39/354 (11%), Positives = 103/354 (29%), Gaps = 40/354 (11%)
Query: 319 KHGDVKVAQNLFSEIEEK---NIVSWNALITSYAEAGLCDEAVEVFSQLEKLD------- 368
+ GD + A+ ++ + N L + + + D + + K +
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 369 --------------------GGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQLAKV 408
++ + A A G+ + + +
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130
Query: 409 VANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHL 468
+ + L ++ + + + + L ++ G +
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 469 VFE---QIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSH 525
FE ++ L + ++ + + + A+A + + V +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYE 249
Query: 526 AGLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKN--MPMEPNAY 582
GL++ + R ++P + Y + + L G + EA D +A
Sbjct: 250 QGLIDLAIDTYR---RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAK 636
L N R N + A + + + E ++ L+++ G+ ++A
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.004
Identities = 41/298 (13%), Positives = 85/298 (28%), Gaps = 13/298 (4%)
Query: 348 YAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRK-MQLA 406
+AG + A QL + + N + R + + ++
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 407 KVVANSVTISGLLSVCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEG 466
++A + + G + I H ++ + L +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 467 HLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHA 526
++ Q + + + G E A A + + IE +P+ + L +A
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNLGCVFNA 181
Query: 527 GLVNEGRRIFDMMVREFRIEPQM-EHYACMVDLLGRAGLLQEASDIVKNMP--MEPNAYV 583
E + ++P + Y + ++L A + A +A V
Sbjct: 182 --QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISA 641
G L D+A + L +Y L+N G +A +A
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.2 bits (90), Expect = 0.002
Identities = 21/210 (10%), Positives = 62/210 (29%), Gaps = 14/210 (6%)
Query: 167 FQGNVHIVNELIGMYAKMGQM--SDSFKLFDKVRVKNYISWNMM--FSGFALNFDCDGAL 222
+ + + +++ + + +L + + +++ A A
Sbjct: 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162
Query: 223 ELFKRMELEGLEP-NFVTWTSLLSSHARCGRLEETMDLFDMMRKRGIEVGAEAIAVVLSV 281
EL L N+ +W + ++ + ++ +
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 282 CADLAADHMGKVIHGFVIKGGFEDYVFVKNALICVYGKHGDVKVAQNLFSEIEEKN---I 338
D +A + + G + +F + + E+E +N +
Sbjct: 223 PNDQSAWFYHRWLLGR------AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 276
Query: 339 VSWNALITSYAEAGLCDEAVEVFSQLEKLD 368
++ L+ + E ++ FS L+ +D
Sbjct: 277 LTIILLMRALDPLLYEKETLQYFSTLKAVD 306
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 881 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.79 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.86 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.43 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.38 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.02 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.42 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-20 Score=152.28 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=108.1
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9840110899999999998818998654999999999953999999999985335---9978999999999975993799
Q 002790 421 VCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENA 497 (881)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 497 (881)
.+...+..+.|...+....... +.+...+..+...+...|++++|...++.... .+...+..+...+...|++++|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 256 (388)
T d1w3ba_ 178 VFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 0102471999999999999849-464999999715522005299999999985777554799999999999987899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-C
Q ss_conf 999999999298778999999999998039899999999998985399879548999999999919989999999829-9
Q 002790 498 LATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-P 576 (881)
Q Consensus 498 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~ 576 (881)
...|++..+.. +-+...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|.+.+++. .
T Consensus 257 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 257 IDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999849-998999999999999748799999999865404--873001015799999987899999999999998
Q ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999-99999999999973999999999999850289991149999999997299
Q 002790 577 MEPN-AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGR 630 (881)
Q Consensus 577 ~~pd-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (881)
..|+ ..++..+...+...|++++|+..+++++++.|.++..|..++.+|.+.|+
T Consensus 334 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 6889899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.9e-20 Score=151.37 Aligned_cols=219 Identities=13% Similarity=0.122 Sum_probs=177.7
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9840110899999999998818998654999999999953999999999985335---9978999999999975993799
Q 002790 421 VCAESAALNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENA 497 (881)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 497 (881)
.....+....+........... +.+...+..+...+...|+.++|...++...+ .+...|..+...+...|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 222 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 2211000135678888740258-610689986363010247199999999999984946499999971552200529999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC-
Q ss_conf 999999999298778999999999998039899999999998985399879-548999999999919989999999829-
Q 002790 498 LATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM- 575 (881)
Q Consensus 498 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m- 575 (881)
...+++..... ..+...+..+...+.+.|++++|...++++.+ ..|+ ...+..+...+...|++++|.+.++..
T Consensus 223 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 223 VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999857775-54799999999999987899999999999998---499989999999999997487999999998654
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf -999999999999999997399999999999985028999114999999999729988999999999849
Q 002790 576 -PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 576 -~~~pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
..+.+...+..+...+...|++++|+..++++++..|.++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0487300101579999998789999999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=9.4e-13 Score=99.42 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9899999999998985399879548999999999919989999999829-9999-9999999999999739999999999
Q 002790 527 GLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMA 604 (881)
Q Consensus 527 g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~ 604 (881)
+...++...+....+...-..+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|+..+
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 57999999999999971301222111036888888887755002111222222222111013330122111101378887
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 998502899911499999999972998899999999984
Q 002790 605 SQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+++++..|.++..+..++.+|.+.|++++|++.+++..+
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 789988432499999999999987899999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.7e-12 Score=96.33 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99379999999999929-8778999999999998039899999999998985399879-548999999999919989999
Q 002790 492 GLGENALATFEEMIEAG-FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEAS 569 (881)
Q Consensus 492 g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~ 569 (881)
+...++.+.+.+..... -.++...+..+...+...|++++|...++..... .|+ ...|..+...+...|++++|.
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHCCCCCCCCHHHH
T ss_conf 5799999999999997130122211103688888888775500211122222---2222111013330122111101378
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH-----------HHHHHHHHHHCCCHHHHH
Q ss_conf 999829-9999-99999999999997399999999999985028999114-----------999999999729988999
Q 002790 570 DIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGS-----------YMLLSNIYAASGRWEDAA 635 (881)
Q Consensus 570 ~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~eA~ 635 (881)
+.+++. ...| +..+|..+..++...|++++|+..+++++++.|.+... +..+..++...|+.+.+.
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 8877899884324999999999999878999999999999970975700112459999999999999999829889999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=7e-09 Score=73.28 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=73.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHH
Q ss_conf 9999997599379999999999929----8778999999999998039899999999998985399879-----548999
Q 002790 484 MISGYGMNGLGENALATFEEMIEAG----FKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-----MEHYAC 554 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-----~~~~~~ 554 (881)
+...+...|+.+.+...+....... .......+......+...+....+...+............ ...+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 87899981456666899999888766300246899998888888764667888899999999998731157269999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCCCHHHHHH
Q ss_conf 999999919989999999829-999-----99999999999999739999999999998502------899911499999
Q 002790 555 MVDLLGRAGLLQEASDIVKNM-PME-----PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGL------ITETTGSYMLLS 622 (881)
Q Consensus 555 li~~~~~~g~~~eA~~~~~~m-~~~-----pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~ 622 (881)
....+...|++++|...+++. ... .....+..+...+...|++++|...+++++.. .|.....+..++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999860448989999999997622466677788999999998758799999999999988764266747999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999972998899999999984
Q 002790 623 NIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 623 ~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+|.+.|++++|.+.+++..+
T Consensus 299 ~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
T ss_conf 999987899999999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.9e-07 Score=63.55 Aligned_cols=51 Identities=22% Similarity=0.037 Sum_probs=20.8
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99189932899999995875999887------479999999996599479999999999
Q 002790 212 FALNFDCDGALELFKRMELEGLEPNF------VTWTSLLSSHARCGRLEETMDLFDMMR 264 (881)
Q Consensus 212 ~~~~g~~~~A~~l~~~m~~~g~~pd~------~ty~~li~~~~~~g~~~~A~~l~~~m~ 264 (881)
+...|++++|..++++.... .|+. ..+..+...+...|++++|...|++..
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99888999999999999854--8689967999999999999998799999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=2.5e-07 Score=62.83 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC---C-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8999999999988189986549999999999539999999999853359---9-78999999999975993799999999
Q 002790 428 LNIGREIHGHVVRVSMNKNILVQNGLLNMYMKCGCLEEGHLVFEQIEKK---D-LITWNSMISGYGMNGLGENALATFEE 503 (881)
Q Consensus 428 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~ 503 (881)
.+.+..+++..+....+.+...+...+..+.+.|+.+.|..+|+.+.+. + ...|...+....+.++.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 59999999999987499879999999999986133899999999999871578699999999999982786889999999
Q ss_pred HHHCCCCCCHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCC
Q ss_conf 999298778999999999-998039899999999998985399879548999999999919989999999829----999
Q 002790 504 MIEAGFKPDGVAFVAVLS-ACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM----PME 578 (881)
Q Consensus 504 m~~~g~~pd~~t~~~ll~-a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m----~~~ 578 (881)
+...+. .+...+..... -+...|+.+.|..+|+.+.+.. ..+...|...++.+.+.|+.+.|..+|++. +..
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 998088-8679999999999876557789999999999861--0038899999999998698689999999999827898
Q ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99--999999999999739999999999998502899
Q 002790 579 PN--AYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 579 pd--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~ 613 (881)
|+ ...|...+..-..+|+.+.+..+++++.+..|.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 6899999999999999849999999999999987711
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=2.2e-09 Score=76.74 Aligned_cols=168 Identities=5% Similarity=-0.097 Sum_probs=102.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 999999539999999999853359---97899999999997599379999999999929877899999999999803989
Q 002790 453 LLNMYMKCGCLEEGHLVFEQIEKK---DLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLV 529 (881)
Q Consensus 453 Li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (881)
....+...+..++|...++.+.+. +...|+.+...+...|++++|...+++.... .|+. ......+...+..
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~ 224 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPN 224 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHCCH
T ss_conf 8999874455289999999988718987999999999999826889899988776776--8999---9999999882441
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999998985399879548999999999919989999999829-99999-999999999999739999999999998
Q 002790 530 NEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTLLNSCRMHKNTDVAEAMASQI 607 (881)
Q Consensus 530 ~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~pd-~~~~~~ll~~~~~~~~~~~A~~~~~~~ 607 (881)
+++...+...... -.++...+..++..+...|+..+|.+.+.+. ...|+ ...|..+...+...|+.++|...++++
T Consensus 225 ~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a 302 (334)
T d1dcea1 225 DQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 302 (334)
T ss_dssp CSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 4889999988771--86605678879999999866999999999887629137999999999998789999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHH
Q ss_conf 50289991149999999997
Q 002790 608 FGLITETTGSYMLLSNIYAA 627 (881)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~ 627 (881)
++++|.....|..|...+.-
T Consensus 303 i~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 303 KAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHCGGGHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHH
T ss_conf 98796639999999999867
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=4.5e-08 Score=67.87 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999998502899911499999999
Q 002790 598 DVAEAMASQIFGLITETTGSYMLLSNIY 625 (881)
Q Consensus 598 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (881)
++|+..+.++++..|.+...+..++.++
T Consensus 203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll 230 (315)
T d2h6fa1 203 EREVQYTLEMIKLVPHNESAWNYLKGIL 230 (315)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7767999999984988569999987798
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=2.9e-07 Score=62.37 Aligned_cols=179 Identities=9% Similarity=0.010 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999985335----99789999999999759937999999999992987789999999999980398999999999
Q 002790 462 CLEEGHLVFEQIEK----KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFD 537 (881)
Q Consensus 462 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~ 537 (881)
..++|..+|++..+ .+...|...+......|+.+.|..+|+++...........+...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHH-HHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98985399879-54899999999-9919989999999829--99999999999999999739999999999998502899
Q 002790 538 MMVREFRIEPQ-MEHYACMVDLL-GRAGLLQEASDIVKNM--PMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITE 613 (881)
Q Consensus 538 ~m~~~~~~~p~-~~~~~~li~~~-~~~g~~~eA~~~~~~m--~~~pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~ 613 (881)
.+.+ ..|. ...|...+... ...|+.+.|..+|+.+ ....+...|...+......|+.+.|..++++++...|.
T Consensus 159 ~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHH---HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9998---0888679999999999876557789999999999861003889999999999869868999999999982789
Q ss_pred CCC----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 911----499999999972998899999999984
Q 002790 614 TTG----SYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 614 ~~~----~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
++. .|...+..-...|+.+.+..+.+++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8689999999999999984999999999999998
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.5e-08 Score=70.98 Aligned_cols=61 Identities=8% Similarity=0.017 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999999999759937999999999992987789999999999980398999999999989
Q 002790 479 ITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
.+|..+...+...|++++|++.++++.+.. +-+...|..+...+...|++++|...++.+.
T Consensus 113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al 173 (315)
T d2h6fa1 113 QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 173 (315)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689887588885053788998875554321-0046889988778888886678999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=2e-08 Score=70.27 Aligned_cols=86 Identities=14% Similarity=-0.022 Sum_probs=32.9
Q ss_pred HHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 9999953999999999985335---9978999999999975993799999999999298778999999999998039899
Q 002790 454 LNMYMKCGCLEEGHLVFEQIEK---KDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVN 530 (881)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (881)
...|.+.|++++|...|++..+ .+..+|+.+..++...|++++|++.|++..... +-+...+..+..++...|+++
T Consensus 44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 122 (259)
T d1xnfa_ 44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDK 122 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999987999999999998543499988999600427888777887523446899987-611115888999999876679
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999989
Q 002790 531 EGRRIFDMMV 540 (881)
Q Consensus 531 ~A~~l~~~m~ 540 (881)
+|...++...
T Consensus 123 ~A~~~~~~al 132 (259)
T d1xnfa_ 123 LAQDDLLAFY 132 (259)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.3e-07 Score=64.69 Aligned_cols=32 Identities=13% Similarity=-0.187 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999973999999999999850289991
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITETT 615 (881)
Q Consensus 584 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~ 615 (881)
|..+...+...|++++|...+++++...|.+.
T Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 212 NFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999987899999999999998399779
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=5.1e-08 Score=67.45 Aligned_cols=44 Identities=5% Similarity=-0.238 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999850289991149999999997299889999999
Q 002790 596 NTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRI 639 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 639 (881)
+.+++...+.+.....|.+...+..++.+|.+.|++++|.+.++
T Consensus 257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~ 300 (334)
T d1dcea1 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 300 (334)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 69999999998876291379999999999987899999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=6.7e-06 Score=53.19 Aligned_cols=21 Identities=5% Similarity=-0.233 Sum_probs=8.4
Q ss_pred HHCCCHHHHHHHHHHHHHCCC
Q ss_conf 973999999999999850289
Q 002790 592 RMHKNTDVAEAMASQIFGLIT 612 (881)
Q Consensus 592 ~~~~~~~~A~~~~~~~~~~~p 612 (881)
...++.+.|...+++..+..|
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC--
T ss_pred HHHCCHHHHHHHHHHHHHHCC
T ss_conf 984659999999999997597
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=2e-06 Score=56.70 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 79548999999999919989999999829-999-9999999999999973999999999999850289991149999999
Q 002790 547 PQMEHYACMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 547 p~~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~-pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
|+...+...+..|.+.|++++|+..|++. ... .+...|..+..++...|+++.|+..+++++++.|.++..|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 64999999999999869999999999999985999899998178987410000012478888887188738999999999
Q ss_pred HHHCCCHHHHHHHHHHHHH
Q ss_conf 9972998899999999984
Q 002790 625 YAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 625 ~~~~g~~~eA~~~~~~m~~ 643 (881)
|.+.|++++|+..++++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
T ss_conf 9987999999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.6e-05 Score=49.21 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=41.0
Q ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99953999999999985335997899999999997599379999999999929877899999999999803989999999
Q 002790 456 MYMKCGCLEEGHLVFEQIEKKDLITWNSMISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRI 535 (881)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l 535 (881)
.+...|+++.|.+.|..+..++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|...
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99987799999999986489889999999999998589146787899999985-52346678899999854249999999
Q ss_pred HHHHH
Q ss_conf 99989
Q 002790 536 FDMMV 540 (881)
Q Consensus 536 ~~~m~ 540 (881)
|++..
T Consensus 93 ~~kAl 97 (192)
T d1hh8a_ 93 LKEAL 97 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.6e-05 Score=50.69 Aligned_cols=81 Identities=12% Similarity=0.006 Sum_probs=35.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCC
Q ss_conf 999975993799999999999298778999999999998039899999999998985399879-5489999999999199
Q 002790 486 SGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGL 564 (881)
Q Consensus 486 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (881)
..+...|+++.|++.|+++ .+|+...+..+..++...|++++|...|++.++ +.|+ ...|..+..++.+.|+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999877999999999864----898899999999999985891467878999999---855234667889999985424
Q ss_pred HHHHHHHHH
Q ss_conf 899999998
Q 002790 565 LQEASDIVK 573 (881)
Q Consensus 565 ~~eA~~~~~ 573 (881)
+++|.+.|+
T Consensus 86 ~~~A~~~~~ 94 (192)
T d1hh8a_ 86 YDLAIKDLK 94 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=2.4e-05 Score=49.48 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=5.8
Q ss_pred HHCCCHHHHHHHHHHC
Q ss_conf 9919989999999829
Q 002790 560 GRAGLLQEASDIVKNM 575 (881)
Q Consensus 560 ~~~g~~~eA~~~~~~m 575 (881)
...|+++.|...+++.
T Consensus 210 l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 210 LAATDAVAAARTLQEG 225 (290)
T ss_dssp HHTTCHHHHHHHHHGG
T ss_pred HHHCCHHHHHHHHHHH
T ss_conf 9846599999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=2.9e-06 Score=55.68 Aligned_cols=104 Identities=11% Similarity=-0.020 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCC-HHHHHHH
Q ss_conf 78999999999998039899999999998985399879-548999999999919989999999829-99999-9999999
Q 002790 511 PDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPN-AYVWGTL 587 (881)
Q Consensus 511 pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~pd-~~~~~~l 587 (881)
|+...+......+.+.|++++|+..|.++... .|+ +..|..++.+|.+.|++++|+..+++. ...|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 64999999999999869999999999999985---999899998178987410000012478888887188738999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 999997399999999999985028999114
Q 002790 588 LNSCRMHKNTDVAEAMASQIFGLITETTGS 617 (881)
Q Consensus 588 l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 617 (881)
..++...|++++|+..+++++++.|.+...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999998799999999999998749556798
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.5e-05 Score=49.29 Aligned_cols=100 Identities=8% Similarity=-0.050 Sum_probs=46.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHH
Q ss_conf 998039899999999998985399879-548999999999919989999999829-9999-9999999999999739999
Q 002790 522 ACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTD 598 (881)
Q Consensus 522 a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~ 598 (881)
.+.+.|++++|...|++..+ +.|+ ...|..+..++...|++++|...|++. ...| +...|..+..++...|+++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99995899999998660211---000113332456788874054212888899999875446687799999999949999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999999850289991149999999
Q 002790 599 VAEAMASQIFGLITETTGSYMLLSNI 624 (881)
Q Consensus 599 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 624 (881)
+|...++++....|.++..+..+..+
T Consensus 96 eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 96 AALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99998999987299979999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=6.6e-07 Score=59.97 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=20.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999998199379999999978735999999880107789999997899579999999978
Q 002790 344 LITSYAEAGLCDEAVEVFSQLEKLDGGSMERPNVISWSAVIGAFASNGRGEEALDLFRKMQ 404 (881)
Q Consensus 344 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 404 (881)
+...+...+++++|...|.+..... +.+...|+.+...+...|+..+|...|.+..
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~-----P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLV-----PSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998024789999999999878-----9965999999999998699999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.8e-05 Score=48.11 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 999999919989999999829-9999-99999999999997399999999999985028999114999999999729988
Q 002790 555 MVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWE 632 (881)
Q Consensus 555 li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (881)
.+..|.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|.+...|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999995899999998660211000113332456788874054212888899999875446687799999999949999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999984
Q 002790 633 DAAKVRISAKT 643 (881)
Q Consensus 633 eA~~~~~~m~~ 643 (881)
+|...+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.8e-05 Score=48.13 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=54.6
Q ss_pred HHHHHHCCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 99999919989999999829-99-99999999999999973999999999999850289991149999999997299889
Q 002790 556 VDLLGRAGLLQEASDIVKNM-PM-EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWED 633 (881)
Q Consensus 556 i~~~~~~g~~~eA~~~~~~m-~~-~pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 633 (881)
+..+.+.|++++|+..|++. .. +.+...|..+..++...|++++|+..++++++..|.++..|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999969999999999998861996013430001101100001121001346777402202677889999998127999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999849
Q 002790 634 AAKVRISAKTK 644 (881)
Q Consensus 634 A~~~~~~m~~~ 644 (881)
|+..+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999984
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.8e-05 Score=48.08 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=63.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCC
Q ss_conf 99998039899999999998985399879-548999999999919989999999829-9-99999999999999997399
Q 002790 520 LSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-P-MEPNAYVWGTLLNSCRMHKN 596 (881)
Q Consensus 520 l~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~-~~pd~~~~~~ll~~~~~~~~ 596 (881)
...+...|++++|+..|+..++. .|+ ...|..+..++...|++++|+..+++. . .+.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999969999999999998861---996013430001101100001121001346777402202677889999998127
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999999985028999114999999999
Q 002790 597 TDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
+++|+..++++++..|.++..+..+..+..
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999999999999849898999999997838
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=0.00014 Score=44.29 Aligned_cols=61 Identities=10% Similarity=-0.111 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999739999999999998502899911499999999972998899999999984
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
+|..+..++.+.|++++|+..+++++.+.|.++..+..++.+|...|++++|+..+++..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988642110110000000100223103467779999872229999999999997
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.7e-05 Score=49.14 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=19.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999759937999999999992987789999999999980398999999999989
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
+...+...+++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998024789999999999878-9965999999999998699999999999998
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.00034 Score=41.69 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 8999999999919989999999829-9999-9999999999999739999999999998502899911499999999972
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
+|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..+++++++.|.++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002231034677799998722299999999999972989899999999999999
Q ss_pred CCHHHH
Q ss_conf 998899
Q 002790 629 GRWEDA 634 (881)
Q Consensus 629 g~~~eA 634 (881)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=0.00031 Score=41.92 Aligned_cols=63 Identities=16% Similarity=0.024 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999999997399999999999985028999114999999999729988999999999849
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTK 644 (881)
Q Consensus 582 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 644 (881)
.++..+..++.+.+++++|+..++++++.+|.+...|..++.+|...|++++|...+++..+-
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999619999998465301110100010000000124677689999968999999999999982
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.95 E-value=4.9e-05 Score=47.36 Aligned_cols=89 Identities=12% Similarity=-0.046 Sum_probs=73.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999999919989999999829-9999-999999999999973999999999999850289991149999999997299
Q 002790 553 ACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGR 630 (881)
Q Consensus 553 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (881)
..++..+.+.|++++|...+++. ...| +...|..+..++...+++++|+..++++++..|.++..+..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred HHHHHHHHHHH
Q ss_conf 88999999999
Q 002790 631 WEDAAKVRISA 641 (881)
Q Consensus 631 ~~eA~~~~~~m 641 (881)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.85 E-value=0.00073 Score=39.41 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999739999999999998502899911499999999972998899999999984
Q 002790 584 WGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 584 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
|..+..++.+.+++++|+..++++++++|.+...|..++.+|...|++++|...++++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 984999987762201100022322201310488999889999882789999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.00031 Score=41.94 Aligned_cols=61 Identities=7% Similarity=-0.098 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999739999999999998502899911499999999972998899999999984
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+..+..++.+.+++++|+..+++++++.|.++..|..++.+|.+.|++++|+..++++.+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998999998640210136665544310002236777699999980479999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.79 E-value=0.00091 Score=38.79 Aligned_cols=91 Identities=3% Similarity=-0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 8999999999919989999999829-99-999999999999999739999999999998502899911499999999972
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PM-EPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAAS 628 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~~~~~m-~~-~pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (881)
.|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|+..++++++++|.++.+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985989899999999999999
Q ss_pred CCHHH-HHHHHHHH
Q ss_conf 99889-99999999
Q 002790 629 GRWED-AAKVRISA 641 (881)
Q Consensus 629 g~~~e-A~~~~~~m 641 (881)
+...+ ..+.+..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 86999999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=9.2e-05 Score=45.51 Aligned_cols=103 Identities=11% Similarity=-0.069 Sum_probs=52.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCH---HHHHHHHHHC-CCCCCH---HHHHHHHH
Q ss_conf 9999998039899999999998985399879-54899999999991998---9999999829-999999---99999999
Q 002790 518 AVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLL---QEASDIVKNM-PMEPNA---YVWGTLLN 589 (881)
Q Consensus 518 ~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~---~eA~~~~~~m-~~~pd~---~~~~~ll~ 589 (881)
.++..+...+++++|.+.|+...+ ..|+ +.++..+..++.+.++. ++|+.++++. ...|++ .+|..+..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 798873699999999999999883---29998999999999999851267899999999999860699319999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9997399999999999985028999114999999
Q 002790 590 SCRMHKNTDVAEAMASQIFGLITETTGSYMLLSN 623 (881)
Q Consensus 590 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 623 (881)
+|...|++++|+..++++++..|.+.........
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999731699999999999769098999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00018 Score=43.51 Aligned_cols=89 Identities=7% Similarity=-0.097 Sum_probs=37.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHH
Q ss_conf 999999919989999999829-999-99999999999999739---9999999999985028999--1149999999997
Q 002790 555 MVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHK---NTDVAEAMASQIFGLITET--TGSYMLLSNIYAA 627 (881)
Q Consensus 555 li~~~~~~g~~~eA~~~~~~m-~~~-pd~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~ 627 (881)
+++.+...+++++|.+.|++. ... .+..++..+..++.+.+ +.++|+.++++++...|.+ ...+..++.+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98873699999999999999883299989999999999998512678999999999998606993199999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 2998899999999984
Q 002790 628 SGRWEDAAKVRISAKT 643 (881)
Q Consensus 628 ~g~~~eA~~~~~~m~~ 643 (881)
.|++++|++.|+++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 7316999999999997
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.0008 Score=39.16 Aligned_cols=86 Identities=14% Similarity=-0.015 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 548999999999919989999999829-9999-99999999999997399999999999985028999114999999999
Q 002790 549 MEHYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYA 626 (881)
Q Consensus 549 ~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (881)
...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|+++.|+..+++++++.|.+..+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999899999864021013666554431000223677769999998047999999999999859899999999999999
Q ss_pred HCCCHHHH
Q ss_conf 72998899
Q 002790 627 ASGRWEDA 634 (881)
Q Consensus 627 ~~g~~~eA 634 (881)
+.....++
T Consensus 157 ~l~~~~~~ 164 (169)
T d1ihga1 157 KIKAQKDK 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99989999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.58 E-value=0.0014 Score=37.45 Aligned_cols=75 Identities=8% Similarity=-0.099 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 8999999999919989999999829-9999-9999999999999739999999999998502899911499999999
Q 002790 551 HYACMVDLLGRAGLLQEASDIVKNM-PMEP-NAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIY 625 (881)
Q Consensus 551 ~~~~li~~~~~~g~~~eA~~~~~~m-~~~p-d~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (881)
+|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..+++++++.|.+..+...+..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99619999998465301110100010000000124677689999968999999999999982989899999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0004 Score=41.21 Aligned_cols=89 Identities=9% Similarity=0.046 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-------HHHHHHHH
Q ss_conf 9999999919989999999829-999-99999999999999739999999999998502899911-------49999999
Q 002790 554 CMVDLLGRAGLLQEASDIVKNM-PME-PNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTG-------SYMLLSNI 624 (881)
Q Consensus 554 ~li~~~~~~g~~~eA~~~~~~m-~~~-pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~ 624 (881)
.++..+.+.|++++|++.|++. ... .+...+..+..++...|+++.|+..++++++..|.+.. +|..++..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998599999999999998849645899986889998818607789999999986801278898899999999999
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 997299889999999998
Q 002790 625 YAASGRWEDAAKVRISAK 642 (881)
Q Consensus 625 ~~~~g~~~eA~~~~~~m~ 642 (881)
+...+++++|++.+++..
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH
T ss_conf 999388999999999998
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.53 E-value=0.0022 Score=36.24 Aligned_cols=50 Identities=20% Similarity=0.049 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 3999999999999850289991149999999997----299889999999998499
Q 002790 594 HKNTDVAEAMASQIFGLITETTGSYMLLSNIYAA----SGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 594 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~m~~~g 645 (881)
..+.+.|+..+++..+.. ++..+..|+.+|.+ ..+.++|.+++++..+.|
T Consensus 195 ~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 310344454676653036--899999999999839997618999999999999876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.0016 Score=37.13 Aligned_cols=60 Identities=13% Similarity=-0.067 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999999973999999999999850289991149999999997299889999999998
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAK 642 (881)
Q Consensus 583 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 642 (881)
.+..+...+...|++++|+..++++++..|.+...|..++.+|.+.|++++|++.|+++.
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999887990578999999998498519999999999998557999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.41 E-value=0.00034 Score=41.71 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=26.6
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 759937999999999992987789999999999980398999999999989
Q 002790 490 MNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 490 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
+.|++++|+..+++.++.. +-+...+..+...++..|++++|...++...
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8889999999999999978-9999999999999998799999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.40 E-value=0.0011 Score=38.23 Aligned_cols=86 Identities=8% Similarity=-0.073 Sum_probs=39.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCC
Q ss_conf 9999975993799999999999298778999999999998039899999999998985399879-548999999999919
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAG 563 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g 563 (881)
...+.+.|++++|+..|++..... +-+...+..+..++.+.|++++|...+++..+ +.|+ ...+..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHCC
T ss_conf 999998760589999886101121-11100123354564101258774100000111---11100000378999999978
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999982
Q 002790 564 LLQEASDIVKN 574 (881)
Q Consensus 564 ~~~eA~~~~~~ 574 (881)
++++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 99999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.23 E-value=0.0023 Score=36.08 Aligned_cols=61 Identities=11% Similarity=-0.022 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-------C----CCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999973999999999999850289-------9----911499999999972998899999999984
Q 002790 583 VWGTLLNSCRMHKNTDVAEAMASQIFGLIT-------E----TTGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 583 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.|..+..++...|++++|...+++.+...| . ....+..++.+|.+.|++++|++.+++..+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999982863001576643553043100245544311278775269999988888888999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0071 Score=32.75 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=23.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999759937999999999992987789999999999980398999999999989
Q 002790 484 MISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMV 540 (881)
Q Consensus 484 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~ 540 (881)
+...+...|++++|+..|++.++.+ +.+...+..+..++.+.|++++|...++.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998599999999999998849-6458999868899988186077899999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.96 E-value=0.00081 Score=39.12 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=76.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHHCCCHHH
Q ss_conf 98039899999999998985399879-548999999999919989999999829-999999-999999999997399999
Q 002790 523 CSHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNM-PMEPNA-YVWGTLLNSCRMHKNTDV 599 (881)
Q Consensus 523 ~~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m-~~~pd~-~~~~~ll~~~~~~~~~~~ 599 (881)
..+.|++++|+..+++.++ ..|+ ...+..++..|+..|++++|.+.++.. ...|+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 9888899999999999999---7899999999999999987999999999999998699738999999999983466378
Q ss_pred HHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998502-89991149999999997299889999999998499
Q 002790 600 AEAMASQIFGL-ITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 600 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
+.......... .|+....+...+..+.+.|+.++|.+.++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 99875444203586479999999999996799899999999998339
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.86 E-value=0.01 Score=31.71 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999907991689999831999999987589999999990999569999999
Q 002790 67 ARVLSIYARFGRLFDARNVFETAPFDCKSSSLLWNSILRVNVSNGLYENALKLYV 121 (881)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 121 (881)
..+...|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~ 64 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGAR 64 (336)
T ss_dssp -----------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC--------HHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999999878779999999986789--------9999999970315999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.74 E-value=0.012 Score=31.12 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=5.7
Q ss_pred HHHHHHHCCCHHHHHHH
Q ss_conf 99999965994799999
Q 002790 243 LLSSHARCGRLEETMDL 259 (881)
Q Consensus 243 li~~~~~~g~~~~A~~l 259 (881)
++..+.+.+++..|.++
T Consensus 46 l~~~~v~l~~~~~avd~ 62 (336)
T d1b89a_ 46 LASTLVHLGEYQAAVDG 62 (336)
T ss_dssp HHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHH
T ss_conf 99999703159999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.63 E-value=0.0022 Score=36.22 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999999850289991149999999997299889999999998499
Q 002790 596 NTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKG 645 (881)
Q Consensus 596 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g 645 (881)
+++.|...++++++..|.+...+..|... .+|.+++.+..+.|
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_conf 67876312110002598889999999999-------99797899999873
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.43 E-value=0.0032 Score=35.12 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=51.3
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 8039899999999998985399879-548999999999919989999999829999999999999999997399999999
Q 002790 524 SHAGLVNEGRRIFDMMVREFRIEPQ-MEHYACMVDLLGRAGLLQEASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEA 602 (881)
Q Consensus 524 ~~~g~~~~A~~l~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~~pd~~~~~~ll~~~~~~~~~~~A~~ 602 (881)
.+.+.+++|...++...+ +.|+ ...+..+..+|...+++..+.+ ..+.+++|+.
T Consensus 8 ~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHH
T ss_conf 987369999999999986---188310899999999987621333367----------------------7887888999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCC-----------HHHHHHHHHHHHH
Q ss_conf 9999850289991149999999997299-----------8899999999984
Q 002790 603 MASQIFGLITETTGSYMLLSNIYAASGR-----------WEDAAKVRISAKT 643 (881)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~eA~~~~~~m~~ 643 (881)
.++++++++|.++..|..++.+|...|+ +++|.+.|++..+
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999887301205877668999987010113578898867876312110002
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.38 E-value=0.021 Score=29.57 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=17.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999997599379999999999929877899999999999803989999999999
Q 002790 485 ISGYGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDM 538 (881)
Q Consensus 485 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~ 538 (881)
...+...|++++|+..++++.... +-+...+..++.++...|+..+|++.|+.
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999988799057899999999849-85199999999999985579999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.022 Score=29.48 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999999999739999999999998502899911499999
Q 002790 582 YVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLS 622 (881)
Q Consensus 582 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 622 (881)
.++..+..++.+.|++++|+..++++++++|.++.++..+.
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99998726888657739888788779886929799999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.02 Score=29.70 Aligned_cols=59 Identities=14% Similarity=-0.014 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999997399999999999985028999-------11499999999972998899999999984
Q 002790 585 GTLLNSCRMHKNTDVAEAMASQIFGLITET-------TGSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 585 ~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
-.+...+.+.|+++.|+..++++++..|.+ ..++..++.+|.+.|++++|+..++++.+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999779999999999999988653014764789999872688865773988878877988
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.27 E-value=0.024 Score=29.17 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=3.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 37999999999
Q 002790 494 GENALATFEEM 504 (881)
Q Consensus 494 ~~~A~~l~~~m 504 (881)
.++|+..|++.
T Consensus 198 ~~~A~~~~~~a 208 (265)
T d1ouva_ 198 FKEALARYSKA 208 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 34445467665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.02 E-value=0.032 Score=28.38 Aligned_cols=24 Identities=4% Similarity=-0.183 Sum_probs=9.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999739999999999998502
Q 002790 587 LLNSCRMHKNTDVAEAMASQIFGL 610 (881)
Q Consensus 587 ll~~~~~~~~~~~A~~~~~~~~~~ 610 (881)
+..++...|++++|+..+++++++
T Consensus 106 ~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 106 RALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 699999888888889999999986
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.98 E-value=0.23 Score=22.58 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99759937999999999992987789999999999980398999999999989853998795489999999999199899
Q 002790 488 YGMNGLGENALATFEEMIEAGFKPDGVAFVAVLSACSHAGLVNEGRRIFDMMVREFRIEPQMEHYACMVDLLGRAGLLQE 567 (881)
Q Consensus 488 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~l~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 567 (881)
+...|..++..+++.+.... .+..-|+-++--....-+-+...+.++.+-+-+.+.|- .....++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHH-HCHHHHHHHHHHHCC---
T ss_conf 98742488679999998466---77551244545243000268999999987634085243-267899999988362---
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999829999999999999999997399999999999985028999114999999999729988999999999849996
Q 002790 568 ASDIVKNMPMEPNAYVWGTLLNSCRMHKNTDVAEAMASQIFGLITETTGSYMLLSNIYAASGRWEDAAKVRISAKTKGLK 647 (881)
Q Consensus 568 A~~~~~~m~~~pd~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~g~~ 647 (881)
+.......+.....+|.-+.-..+++.+.+....++....-++.+|.+.|...++-+++.++-++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf ------------18999999999998260878999999987537998799999999998852244489999999997599
Q ss_pred C
Q ss_conf 6
Q 002790 648 K 648 (881)
Q Consensus 648 ~ 648 (881)
.
T Consensus 153 e 153 (161)
T d1wy6a1 153 E 153 (161)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.42 E-value=0.86 Score=18.70 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999850289991-1499999999972998899999999984
Q 002790 597 TDVAEAMASQIFGLITETT-GSYMLLSNIYAASGRWEDAAKVRISAKT 643 (881)
Q Consensus 597 ~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 643 (881)
.+.|+.+++++....|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999998549505999999999999987329999999999982
|