Citrus Sinensis ID: 002793

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880
MKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRQCSGSSSNSGVDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEcccccccccccccccccccccccccccEEEEEEcccccccEEEEcccccHHHHHccccccccccccEEEEEEcccccccccccEEEEEcccccccHHHHHHHHHHHcccccccccHHHHHccccccccccHHHHccccccccccEEEEccccccccccEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHccccEEEccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEccccccccccccEEEccEEEEEEcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEEEEEcccc
cccccccccHHHccccHHHHccccccHccccccccEEEEEccccccccccccccccccccccccEEEccccccEEEccccccccccccccHHHHHHHHcccEEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccEEEEEcccccccEEEEEcccccccEEEccccccccccccEEEEEEEcccccccccccEEEEEEccccccccHHHHEEEccccccccccHHHHHHHHcccccccHHHHHccccHccccEEEEccccccccccEEEEEEcccccEEEEEEEEEEEEEEccccHHHHHHHHccccEEccccEcccccHHHHcccccccccccEEEEEEEEEEcccccEEEEEEcHHHHHcHHHccHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHcccEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHEEEccccccccccccccEcccccEcccccHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccEEEEEEcccEEcEEEEEEccccccEEEcccccEEEEEEcccccEEEccccEEEEEccEEEEEEEEEccccccccccHccccccccccccccccccccHcccccccccccEHHHHccccEEEEEEccccccccEEEEEEEEcccc
mkgfsnnssivedsnlpteangmhsdickgkskVDVSYEYSNctllsekgihhdddssseaYNQEMIEregynyinghhpstsdstekvsssqqnDGMNAIERLSAMIssyptkrptgrvvsiiersprrdgivGFLNVNqwfnykggsrkdakknrsslsvpdreyiqltpthpkypkMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDewneespfpqahVLHVfgrggevepqINAILYEnaiccsgfspeslsclpcvpwevpqeellsrkdLRNFCiftidpstatdlddaLSIERLSDGISRVGVHIADVSyfvlpgtaldieAQVRSTSVYMLQrkipmlpvllseevgslnpgvdrLAFSIFWDlnsagdvvdrwiGRTVIRSCCKLSYEHAQDiidgkfdvessntlgegwpqlygqfewSDVVRSIKSLYEVSKILkdkrftdgalrlenskpvflfdeygtpydsvlsgreDLNFLFEEFMLLANKTAAEVIARafpdsallrrhpapnmrKLREFEAFCskhglqldtsssgqfHQSLEQAREKLKDDYVLFDILINyatrpmqlasyfcsgdfkddtdwghyalafpvythftsplrrypdlVVHRTLNAALEAEKLYWKHRrmlpknnhregvrgrfltgifydkdaaeSLEGREALSVAALKYGVPCADILVNVAthcndrklACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAhkrsfkrggpgnyrALEEVALVvrpndlkeehgmfggsvnkcfttdanakrqcsgsssnsgvdpgvfpltipllstIPVAlnaigggdgpleIGVRLYMSSYMR
mkgfsnnssivedsnlpteangmhsdiCKGKSKVDVSYEYSNCTLLsekgihhdddsSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMissyptkrptgrvvsiiersprrdgivgflnvnqwfnykggsrkdakknrsslsvpdreyiqltpthpkypkmvVLVKDLPDSIKKRleegdatiEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTidpstatdlddALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIlkdkrftdgalrlenskpvflfdeYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARafpdsallrrhpAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKhrrmlpknnhregvrgrFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARvlalgprfmTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKrsfkrggpgnyRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRqcsgsssnsgvdpGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
MKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPstsdstekvsssQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRQCSGSSSNSGVDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
********************************KVDVSYEYSNCTLL************************************************************************RVVSIIERSPRRDGIVGFLNVNQWFNYK********************YIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLR*********LREFEAFCS************************LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTT******************PGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYM*****
******N****EDSNLPTEANGMHSDICKGKSKVDV*******************************EREGYNYINGHHPSTSDSTEKVSSSQ***GMNAI*****************RVVSIIERSPRRDGIVGFLNVNQWFNYK**************SVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSS***FHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKH**********************YDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACR*VKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSL**************YRALEEVALVVR****************************************GVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
**********VEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHH****************DGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKG***************PDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDAN*************VDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
***************LPT**N*MHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKL*****RMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFG*SV**********************VDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRQCSGSSSNSGVDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query880 2.2.26 [Sep-21-2011]
Q8IYB7885 DIS3-like exonuclease 2 O yes no 0.671 0.667 0.378 1e-117
Q8CI75870 DIS3-like exonuclease 2 O yes no 0.640 0.648 0.372 1e-115
Q0V9R3834 DIS3-like exonuclease 2 O yes no 0.636 0.671 0.379 1e-113
O14040927 Dis3-like exonuclease C2C yes no 0.593 0.563 0.398 1e-100
Q09568848 Uncharacterized ribonucle yes no 0.605 0.628 0.325 4e-83
A0JN801053 DIS3-like exonuclease 1 O no no 0.648 0.542 0.315 3e-79
Q9CSH3958 Exosome complex exonuclea no no 0.520 0.478 0.361 1e-78
Q9Y2L1958 Exosome complex exonuclea no no 0.521 0.479 0.365 6e-78
Q8TF461054 DIS3-like exonuclease 1 O no no 0.648 0.541 0.312 3e-76
Q5R5N81054 DIS3-like exonuclease 1 O no no 0.648 0.541 0.312 2e-75
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4 Back     alignment and function desciption
 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/679 (37%), Positives = 357/679 (52%), Gaps = 88/679 (12%)

Query: 76  NGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVG 135
           +G  P T D T  +S   +     +++R             + +VV I+E+   R    G
Sbjct: 204 DGDAPVTKDETTCISQDTRALSEKSLQR-------------SAKVVYILEKKHSR-AATG 249

Query: 136 FLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRL 195
           FL +             A KN        R+Y   +P+  + P++ V +KD P     R 
Sbjct: 250 FLKLL------------ADKNSELF----RKYALFSPSDHRVPRIYVPLKDCPQDFVARP 293

Query: 196 EEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSP 255
           ++   T    L   RI +W E+  F    +    G+ GE+EP+   IL E  +  S FS 
Sbjct: 294 KDYANT----LFICRIVDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSS 349

Query: 256 ESLSCLP-CVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVH 314
           E L CLP  +PW +P EE   R+DLR  CIFTIDPSTA DLDDALS + L+DG  +VGVH
Sbjct: 350 EVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVH 409

Query: 315 IADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWD 374
           IADVSYFV  G+ LD  A  R+TSVY++Q+ +PMLP LL EE+ SLNP  D+L FS+ W 
Sbjct: 410 IADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWT 469

Query: 375 LNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDV 434
           L   G ++D W GRT+IRSC KLSYEHAQ +I+   +   +  L    P +  +    +V
Sbjct: 470 LTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKEL----PPISPEHSSEEV 525

Query: 435 VRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEF 493
            +++ +L+ ++K L+ +RF DGALRL+  K  F  D E G P    +    + N L EEF
Sbjct: 526 HQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEF 585

Query: 494 MLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLE 553
           MLLAN   A  I RAFP+ ALLRRHP P  R L +   FC + GL +D SS+G  ++SL 
Sbjct: 586 MLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLT 645

Query: 554 QAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRR 613
           Q     K      ++L N  +RPMQ+A YFCSG  +D   + HYAL  P+YTHFTSP+RR
Sbjct: 646 QTFGDDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRR 705

Query: 614 YPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREAL 673
           + D++VHR L AAL                    G R R         D A         
Sbjct: 706 FADVLVHRLLAAAL--------------------GYRERL--------DMA--------- 728

Query: 674 SVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLAL 733
                       D L   A HCNDR++A + V++    L+  +L+K+   L SEA V+ +
Sbjct: 729 -----------PDTLQKQADHCNDRRMASKRVQELSTSLFFAVLVKESGPLESEAMVMGI 777

Query: 734 GPRFMTIYIEKLAIERRIY 752
             +   + + +  +++RIY
Sbjct: 778 LKQAFDVLVLRYGVQKRIY 796
Ribonuclease that plays a critical role in RNA metabolism. It is essential for correct mitosis, and negatively regulates cell proliferation.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1 Back     alignment and function description
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1 Back     alignment and function description
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1 Back     alignment and function description
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans GN=F48E8.6 PE=3 SV=2 Back     alignment and function description
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2 Back     alignment and function description
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4 Back     alignment and function description
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2 Back     alignment and function description
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2 Back     alignment and function description
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query880
255545438 1099 RNA binding protein, putative [Ricinus c 0.995 0.797 0.667 0.0
359492408 1131 PREDICTED: DIS3-like exonuclease 2-like 0.989 0.770 0.630 0.0
356551558 1133 PREDICTED: DIS3-like exonuclease 2-like 0.989 0.768 0.626 0.0
224082254944 predicted protein [Populus trichocarpa] 0.972 0.906 0.638 0.0
356550838 1184 PREDICTED: DIS3-like exonuclease 2-like 0.973 0.723 0.613 0.0
449446430 1125 PREDICTED: DIS3-like exonuclease 2-like 0.989 0.774 0.595 0.0
449499475 1159 PREDICTED: LOW QUALITY PROTEIN: DIS3-lik 0.988 0.750 0.594 0.0
357488975 1162 DIS3-like exonuclease [Medicago truncatu 0.984 0.745 0.569 0.0
302141847 1007 unnamed protein product [Vitis vinifera] 0.860 0.751 0.618 0.0
224066863860 predicted protein [Populus trichocarpa] 0.819 0.838 0.659 0.0
>gi|255545438|ref|XP_002513779.1| RNA binding protein, putative [Ricinus communis] gi|223546865|gb|EEF48362.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/884 (66%), Positives = 704/884 (79%), Gaps = 8/884 (0%)

Query: 3    GFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEY--SNCTLLSEKGIHHDDDS-SS 59
            G SN+ ++ ED N   E + M S  CKGK KV+V +++  S    L +KGIH +D S ++
Sbjct: 216  GPSNSIALAEDCNSAVELSEMASGSCKGKIKVEVDHDFAESGSFSLPQKGIHSEDSSCAT 275

Query: 60   EAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGR 119
            EA +QE+    GYN   G HPS S+S+   SS  Q++G NA+ RL  MISS+PTKRPTGR
Sbjct: 276  EAVHQELNGSTGYNIGIGDHPSASESSNFGSSMGQHEGANAVGRLCTMISSHPTKRPTGR 335

Query: 120  VVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPK 179
            VV+IIERSPRRD I+GFLNV QWF  +   +KD+KKN++S S+ DREYIQL PT PK+PK
Sbjct: 336  VVAIIERSPRRDAIIGFLNVKQWFYCREACKKDSKKNKNSSSISDREYIQLMPTDPKFPK 395

Query: 180  MVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQI 239
            M+VL   LPDSIKKRLE GDAT+EMELVAA+ID W++ESP P AHV  +FGRG E+EPQ+
Sbjct: 396  MMVLASSLPDSIKKRLEGGDATVEMELVAAQIDNWDDESPSPHAHVSRIFGRGSELEPQL 455

Query: 240  NAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDAL 299
            +AILYEN IC S FSPESLSC+PC  WEVP EE+  RKDLRN CIFTIDPSTATDLDDAL
Sbjct: 456  SAILYENTICYSDFSPESLSCIPCDSWEVPAEEIRRRKDLRNLCIFTIDPSTATDLDDAL 515

Query: 300  SIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGS 359
            S+ERL +GI RVGVHIADVSYFVLP +ALD EAQ RSTSVY+L+ K+PMLP LLSE +GS
Sbjct: 516  SVERLPNGILRVGVHIADVSYFVLPDSALDKEAQARSTSVYLLRGKLPMLPPLLSENLGS 575

Query: 360  LNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLG 419
            LNPGVDRLAF+IFW+LNS GDV DRWIGRTVI+SCCKLSY+HAQ+++DG    E+ NT G
Sbjct: 576  LNPGVDRLAFTIFWELNSTGDVTDRWIGRTVIQSCCKLSYQHAQEMVDGVIREEACNTFG 635

Query: 420  EGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSV 479
               PQLYG F+WSDV+RS+KSL E+SK L++KRF DGAL+LE+SK  FLFDEYG PYDSV
Sbjct: 636  NSLPQLYGPFDWSDVIRSVKSLNEISKTLREKRFNDGALQLESSKIGFLFDEYGIPYDSV 695

Query: 480  LSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQ 539
            L GR+D +FL EEFMLLAN+TAAEVI+RAFPDSALLRRHPAPNMRKLREFEAFC KHGLQ
Sbjct: 696  LCGRKDSDFLVEEFMLLANRTAAEVISRAFPDSALLRRHPAPNMRKLREFEAFCCKHGLQ 755

Query: 540  LDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD-TDWGHYA 598
            LD+SSSG FHQSLE  R KLKDD VL  IL++YA+RPMQLA+YFCSG  KD+  DWGHYA
Sbjct: 756  LDSSSSGNFHQSLECIRGKLKDDSVLCGILMSYASRPMQLATYFCSGVMKDNMNDWGHYA 815

Query: 599  LAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIF 658
            LA  +YTHFTSPLRRYPD++VHRTL AA+EAE+LY + RR+  K    + V  R  TGI+
Sbjct: 816  LAVALYTHFTSPLRRYPDIIVHRTLAAAIEAEELYMRSRRISCKAGMGDKVM-RCFTGIY 874

Query: 659  YDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILL 718
            +DKDAAES+EG+EALS AA K+ +PC + L NV  +CNDRKLA R+VKDAC KLYMW LL
Sbjct: 875  FDKDAAESVEGKEALSAAASKHRIPCTESLANVVAYCNDRKLASRHVKDACDKLYMWALL 934

Query: 719  KKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVLSLCAHK 778
            K+KEVLLS+ARVL LGPRFM+IYI+KLAIERRIYY+EVEGL VEWLE TSTLVL+LC++K
Sbjct: 935  KRKEVLLSDARVLGLGPRFMSIYIQKLAIERRIYYEEVEGLTVEWLEATSTLVLNLCSYK 994

Query: 779  RSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRQCS---GSSSN 835
            R+F+R G G YR L+E A VV P  LK E  M G S  +C   D++   + S      S 
Sbjct: 995  RAFRRSGSGFYRELDEFAWVVSPCSLKLEADMVGESPKECRIADSDNNGKASQHIDPISE 1054

Query: 836  SGVDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYM 879
            S +DP VFP+T+ LLSTIPVAL+A+GG D P+EIGVR++ SSY+
Sbjct: 1055 SKIDPVVFPITVRLLSTIPVALHAVGGDDRPIEIGVRVFASSYL 1098

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492408|ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551558|ref|XP_003544141.1| PREDICTED: DIS3-like exonuclease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224082254|ref|XP_002306619.1| predicted protein [Populus trichocarpa] gi|222856068|gb|EEE93615.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550838|ref|XP_003543790.1| PREDICTED: DIS3-like exonuclease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446430|ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449499475|ref|XP_004160827.1| PREDICTED: LOW QUALITY PROTEIN: DIS3-like exonuclease 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357488975|ref|XP_003614775.1| DIS3-like exonuclease [Medicago truncatula] gi|355516110|gb|AES97733.1| DIS3-like exonuclease [Medicago truncatula] Back     alignment and taxonomy information
>gi|302141847|emb|CBI19050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224066863|ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|222843977|gb|EEE81524.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query880
TAIR|locus:22032311055 AT1G77680 [Arabidopsis thalian 0.785 0.654 0.621 1.9e-234
RGD|1560168884 Dis3l2 "DIS3 mitotic control h 0.517 0.514 0.447 1.5e-112
MGI|MGI:2442555870 Dis3l2 "DIS3 mitotic control h 0.517 0.522 0.445 3.1e-112
ZFIN|ZDB-GENE-070705-171995 si:ch211-273k1.4 "si:ch211-273 0.517 0.457 0.447 1.9e-110
UNIPROTKB|Q8IYB7885 DIS3L2 "DIS3-like exonuclease 0.517 0.514 0.458 3.9e-110
UNIPROTKB|E1C372875 DIS3L2 "Uncharacterized protei 0.510 0.513 0.468 8e-110
UNIPROTKB|E1B7R0882 DIS3L2 "Uncharacterized protei 0.576 0.574 0.437 2.1e-100
UNIPROTKB|E2QZ40870 DIS3L2 "Uncharacterized protei 0.621 0.628 0.410 9.1e-100
UNIPROTKB|F6XKS7879 DIS3L2 "Uncharacterized protei 0.621 0.622 0.410 9.1e-100
POMBASE|SPAC2C4.07c927 SPAC2C4.07c "ribonuclease II ( 0.580 0.551 0.406 7.6e-99
TAIR|locus:2203231 AT1G77680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2261 (801.0 bits), Expect = 1.9e-234, P = 1.9e-234
 Identities = 441/710 (62%), Positives = 539/710 (75%)

Query:    93 QQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKD 152
             +Q    +A+++L  ++SS+P KRPTG+VV+++E+S  RD IVG L+V  W +YK     D
Sbjct:   296 EQKGNCSAVDKLCGILSSFPHKRPTGQVVAVVEKSLVRDSIVGLLDVKGWIHYK---ESD 352

Query:   153 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARID 212
              K+ +S LS+ D EY+QL P  P++PK++V    LP SI+ RLE  D  +E ELVAA+I 
Sbjct:   353 PKRCKSPLSLSDDEYVQLMPADPRFPKLIVPFHVLPGSIRARLENLDPNLEAELVAAQIV 412

Query:   213 EWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEE 272
             +W E SPFP A + H+FGRG E+EPQINAILY+N++C S FSP SL+ LP VPWEVP+EE
Sbjct:   413 DWGEGSPFPVAQITHLFGRGSELEPQINAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEE 472

Query:   273 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 332
             +  RKDLR+ C+ TIDPSTATDLDDALS++ L  G  RVGVHIADVSYFVLP TALD EA
Sbjct:   473 VQRRKDLRDLCVLTIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEA 532

Query:   333 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 392
             + RSTSVY++QRKI MLP LLSE VGSL+PG DRLAFSI WDLN  GDV+DRWIGRT+IR
Sbjct:   533 RFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIR 592

Query:   393 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 452
             SCCKLSY+HAQDIIDGK DV  +     GWP L+G F+W DV RS+K L E+S  L+ KR
Sbjct:   593 SCCKLSYDHAQDIIDGKSDVAEN-----GWPALHGSFKWCDVTRSVKQLSEISTTLRQKR 647

Query:   453 FTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDS 512
             F +GAL+LENSKPVFLFDE+G PYD V   R+  NFL EEFMLLAN TAAEVI++A+  S
Sbjct:   648 FRNGALQLENSKPVFLFDEHGVPYDFVTCSRKGSNFLVEEFMLLANMTAAEVISQAYRAS 707

Query:   513 ALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINY 572
             +LLRRHP PN RKL+EFE FCSKHG+ LD SSSGQ   SLE+    LKDD V  DIL NY
Sbjct:   708 SLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSLEKITGNLKDDSVFVDILNNY 767

Query:   573 ATRPMQLASYFCSGDFKDDT-DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 631
             A +PMQLASYFC+G+ KD   +WGHYALA P+YTHFTSPLRRYPD+VVHR L AALEAE+
Sbjct:   768 AIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPLRRYPDIVVHRALAAALEAEE 827

Query:   632 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 691
             LY K ++        EG R  F TGI ++KDAAES+EG+EALSVAALK+GVP  +IL +V
Sbjct:   828 LYSKQKQTAID----EG-RSCF-TGIHFNKDAAESIEGKEALSVAALKHGVPSTEILSDV 881

Query:   692 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRI 751
             A +CN+RKLA R V+DAC KLY W +LK+KE+   EARV+ LG RFMT+YI KL IERRI
Sbjct:   882 AAYCNERKLAARKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGIERRI 941

Query:   752 YYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRP 801
             YYD++EGL  +WLE TSTL++     K   KRGG G ++ ++E   +V P
Sbjct:   942 YYDQIEGLCADWLEATSTLIVD----KLYSKRGGRGFFKPMKEAVYLVSP 987
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0004540 "ribonuclease activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
RGD|1560168 Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2442555 Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-171 si:ch211-273k1.4 "si:ch211-273k1.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYB7 DIS3L2 "DIS3-like exonuclease 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C372 DIS3L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7R0 DIS3L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ40 DIS3L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XKS7 DIS3L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
POMBASE|SPAC2C4.07c SPAC2C4.07c "ribonuclease II (RNB) family (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!
3rd Layer3.1.13.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query880
COG0557706 COG0557, VacB, Exoribonuclease R [Transcription] 1e-117
pfam00773322 pfam00773, RNB, RNB domain 1e-111
TIGR02063709 TIGR02063, RNase_R, ribonuclease R 2e-99
smart00955286 smart00955, RNB, This domain is the catalytic doma 5e-94
TIGR00358654 TIGR00358, 3_prime_RNase, VacB and RNase II family 3e-70
PRK11642813 PRK11642, PRK11642, exoribonuclease R; Provisional 6e-45
TIGR02062639 TIGR02062, RNase_B, exoribonuclease II 7e-27
COG4776645 COG4776, Rnb, Exoribonuclease II [Transcription] 2e-25
PRK05054644 PRK05054, PRK05054, exoribonuclease II; Provisiona 4e-25
>gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] Back     alignment and domain information 
 Score =  372 bits (958), Expect = e-117
 Identities = 188/516 (36%), Positives = 253/516 (49%), Gaps = 67/516 (12%)

Query: 114 KRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPT 173
           +     VV I+ER      +VG L  +Q                    +PD + +     
Sbjct: 123 RFKEAAVVRILER--ANSALVGELRPSQGIGRV---------------LPDDKRLP---- 161

Query: 174 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 233
                 + +  +  P       EEG       LV   I  W + S  P   V+ V G  G
Sbjct: 162 ----FLIAIPPEQAPG-----AEEGH------LVVVEITRWPDTSRPPFGEVVEVLGDLG 206

Query: 234 EVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTAT 293
           +    I AIL ++ I  S F  + L     +P EVP+E+L  R DLR+  IFTIDP  A 
Sbjct: 207 DPGADIEAILRDHGI-PSEFPEKVLDEAAALPDEVPEEDLKGRVDLRDLPIFTIDPEDAK 265

Query: 294 DLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLL 353
           DLDDA+S+E+L +G  R+GVHIADVS++V PG+ALD EA+ R TSVY+  R IPMLP  L
Sbjct: 266 DLDDAVSVEKLRNGGYRLGVHIADVSHYVQPGSALDKEARKRGTSVYLPDRVIPMLPEAL 325

Query: 354 SEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVE 413
           S  + SLNPGVDRLA S    L+S G V    I  +VI+S  +L+YE  Q I+DGK D +
Sbjct: 326 SNGLCSLNPGVDRLALSCEMTLDSEGRVKKYEIYPSVIKSAARLTYEEVQAILDGKEDDK 385

Query: 414 SSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG 473
                             + ++ S+  L E++KILK KR + GA+  +  +   + DE G
Sbjct: 386 Y-----------------APLLDSLLELLELAKILKKKRLSRGAIDFDTPEAKIVLDEEG 428

Query: 474 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC 533
            P +  +  R D   L EEFMLLAN+T AE + +      L R H  P+  KL+    F 
Sbjct: 429 RPVEIEIRERLDAEKLIEEFMLLANETVAEHLEKHKIP-LLYRTHERPSTEKLQSLREFL 487

Query: 534 SKHGLQLDTSSSGQFHQSLEQAREKLKD--DYVLFDILINYATRPMQLASYFCSGDFKDD 591
              GL L    S    Q  +   E +K      +   L+    R M+ A Y         
Sbjct: 488 QNLGLVLPLGGSKPQPQDYQILLETVKGRPLEAVLQTLLL---RSMKQAEY-------SP 537

Query: 592 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 627
            + GH+ LA   YTHFTSP+RRYPDL+VHR L A L
Sbjct: 538 DNVGHFGLALDYYTHFTSPIRRYPDLIVHRQLKALL 573

Length = 706
>gnl|CDD|216112 pfam00773, RNB, RNB domain Back     alignment and domain information
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R Back     alignment and domain information
>gnl|CDD|214935 smart00955, RNB, This domain is the catalytic domain of ribonuclease II Back     alignment and domain information
>gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional Back     alignment and domain information
>gnl|CDD|131117 TIGR02062, RNase_B, exoribonuclease II Back     alignment and domain information
>gnl|CDD|227117 COG4776, Rnb, Exoribonuclease II [Transcription] Back     alignment and domain information
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 880
PRK11642813 exoribonuclease R; Provisional 100.0
TIGR00358654 3_prime_RNase VacB and RNase II family 3'-5' exori 100.0
TIGR02063709 RNase_R ribonuclease R. This family consists of an 100.0
PRK05054644 exoribonuclease II; Provisional 100.0
COG0557706 VacB Exoribonuclease R [Transcription] 100.0
TIGR02062639 RNase_B exoribonuclease II. This family consists o 100.0
KOG2102941 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
PF00773325 RNB: RNB domain CAUTION: The Prosite pattern does 100.0
COG4776645 Rnb Exoribonuclease II [Transcription] 100.0
cd0447183 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai 98.23
cd0446099 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. 97.11
PF0820658 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013 97.07
TIGR00448179 rpoE DNA-directed RNA polymerase (rpoE), archaeal 96.95
cd0568673 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom 96.75
cd0568479 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal 96.08
COG1095183 RPB7 DNA-directed RNA polymerase, subunit E' [Tran 95.72
cd0568972 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p 95.52
PRK08582139 hypothetical protein; Provisional 95.51
PRK08563187 DNA-directed RNA polymerase subunit E'; Provisiona 95.47
cd0570673 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a 95.46
cd0569769 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t 95.42
cd0570877 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a 95.28
cd0569069 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p 95.24
cd0445276 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr 95.16
PF0057574 S1: S1 RNA binding domain; InterPro: IPR003029 Rib 95.08
cd0570768 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a 94.7
cd0568568 S1_Tex S1_Tex: The C-terminal S1 domain of a trans 94.59
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 94.43
cd0569671 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t 94.39
PF0820658 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013 94.39
PRK07252120 hypothetical protein; Provisional 94.15
cd0569870 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp 93.96
cd0446183 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp 93.84
PRK05807136 hypothetical protein; Provisional 93.81
cd0570574 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a 93.35
cd0447268 S1_PNPase S1_PNPase: Polynucleotide phosphorylase 93.22
cd0568868 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p 92.32
cd0569269 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p 92.2
smart0031672 S1 Ribosomal protein S1-like RNA-binding domain. 92.17
cd0570373 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R 91.47
cd0569173 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p 91.45
cd0447377 S1_RecJ_like S1_RecJ_like: The S1 domain of the ar 91.39
PTZ00248 319 eukaryotic translation initiation factor 2 subunit 90.73
PRK03987 262 translation initiation factor IF-2 subunit alpha; 90.7
PRK08059123 general stress protein 13; Validated 89.94
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 89.55
PTZ00162176 DNA-directed RNA polymerase II subunit 7; Provisio 89.31
PRK07899486 rpsA 30S ribosomal protein S1; Reviewed 89.0
cd0570270 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R 88.93
TIGR02063709 RNase_R ribonuclease R. This family consists of an 88.83
cd0569566 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t 88.7
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 88.27
PHA0294588 interferon resistance protein; Provisional 88.15
cd0570472 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a 87.8
PRK12269863 bifunctional cytidylate kinase/ribosomal protein S 86.67
cd0016465 S1_like S1_like: Ribosomal protein S1-like RNA-bin 86.65
cd0445388 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik 85.81
cd05693100 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp 85.47
PRK07400318 30S ribosomal protein S1; Reviewed 85.05
cd0446288 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly 84.68
COG1098129 VacB Predicted RNA binding protein (contains ribos 82.6
PRK07899 486 rpsA 30S ribosomal protein S1; Reviewed 81.84
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 81.05
COG0539 541 RpsA Ribosomal protein S1 [Translation, ribosomal 80.08
>PRK11642 exoribonuclease R; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-124  Score=1128.67  Aligned_cols=628  Identities=24%  Similarity=0.319  Sum_probs=547.7

Q ss_pred             ccccCcCccccCCCCccc-ccccceeeeeeecccCCCCCCCCCccccccccCccchhhhhc--eeEEEEecC-CCCCccE
Q 002793           43 CTLLSEKGIHHDDDSSSE-AYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIE--RLSAMISSY-PTKRPTG  118 (880)
Q Consensus        43 ~~~~~~k~~~~~~~~~g~-~~h~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~v~~~~~~~-~~~~p~G  118 (880)
                      .|.+|++.....    |. ..|+.||||+..   ++.        .+|+||..++++.|||  +|++.+... .+++|+|
T Consensus        75 ~~~~~~~~~~~~----G~v~~~~~GfgFv~~---e~~--------~~difI~~~~l~~A~~GD~V~v~i~~~~~~~r~eg  139 (813)
T PRK11642         75 CYALPERLDLLK----GTVIGHRDGYGFLRV---EGR--------KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA  139 (813)
T ss_pred             eEecCCcCceEE----EEEEECCCccEEEEE---CCC--------CCCEEEChHHHccCCCCCEEEEEEccCCCCCCcEE
Confidence            455555433222    88 779999999632   221        1478999999999999  888887653 3467899


Q ss_pred             EEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCCCCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccC
Q 002793          119 RVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEG  198 (880)
Q Consensus       119 ~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~g  198 (880)
                      +|++||+|+.  +.+||++..                ..        +..+++|+|+|++..+.+...    ....+++|
T Consensus       140 ~Vv~IleR~~--~~~vG~~~~----------------~~--------~~~~v~P~d~r~~~~i~i~~~----~~~~~~~g  189 (813)
T PRK11642        140 RIVRVLVPKT--SQIVGRYFT----------------DA--------GVGFVVPDDSRLSFDILIPPE----QIMGARMG  189 (813)
T ss_pred             EEEEEEecCC--CEEEEEEEE----------------eC--------CeEEEEECCCCCCCcEEeccc----cccCCCCC
Confidence            9999999985  679999982                22        367899999999985554221    12355666


Q ss_pred             CccccceEEEEEEeecCCCCCCCcEEEEEEcCCCCChhHHHHHHHHhcCCCCCCCChhhhccCCCCCCCCChhhhccCcc
Q 002793          199 DATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKD  278 (880)
Q Consensus       199 d~~~~~~lvvv~I~~wp~~~~~p~G~iv~~LG~~~d~~~e~~ail~e~~i~~~~F~~~vl~~~~~~~~~i~~~e~~~R~D  278 (880)
                      |      +|+|+|++||..+.+|.|+|+++||..+++.+|++++|.+|+| +.+||++++++++.+++.+++++.++|+|
T Consensus       190 d------~V~v~I~~~p~~~~~~~g~iv~vLG~~~d~~~d~~~il~~~~i-p~~Fp~~v~~ea~~~~~~~~~~~~~~R~D  262 (813)
T PRK11642        190 F------VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAGRVD  262 (813)
T ss_pred             C------EEEEEEecCCCcCCCCCEEEEEEecCCCCcchHHHHHHHHcCC-CCCCCHHHHHHHHhccccCChhHhccccc
Confidence            6      8999999999999999999999999999999999999999999 57999999999999999999999999999


Q ss_pred             CCCceEEEEcCCCCCCCCceEEEEEcCCceEEEEEEEccccccccCCCHhhHHHHhCcceeecCCCcccCCChhhhhccc
Q 002793          279 LRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVG  358 (880)
Q Consensus       279 lr~l~i~TIDp~~akDlDDAlsie~l~~G~~~lgVHIADVS~yV~~gS~LD~eA~~RgtSvYLp~rviPMLP~~Ls~~lc  358 (880)
                      ||++++|||||++|+||||||||+++++|+|+||||||||||||++||+||+||++||||||||++++||||+.|||++|
T Consensus       263 Lr~l~~vTID~~~akD~DDAvsie~~~~g~~~L~VHIADVs~yV~~gS~LD~eA~~RgtSvYlpd~viPMLP~~Lsn~lc  342 (813)
T PRK11642        263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLC  342 (813)
T ss_pred             cccCcEEEECCCCCCcccceEEEEEeCCCcEEEEEEecchhheeCCCCHHHHHHHHhCCeEeCCCceeeCCCHHHhcCcc
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEEEEEEcCCCCEEEEEEEEEEEecccccCHHHHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHH
Q 002793          359 SLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSI  438 (880)
Q Consensus       359 SL~pg~dRlA~Sv~~~id~~G~i~~~~~~~SvIrS~~rLTY~~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L  438 (880)
                      ||+||++|+||||.|+||.+|+|++++|++|+|+|+++|||++|+++|+++...  .             ..+.++.++|
T Consensus       343 SL~p~~dRla~s~~~~id~~G~v~~~~~~~svI~s~~rltY~~v~~~l~~~~~~--~-------------~~~~~~~~~L  407 (813)
T PRK11642        343 SLNPQVDRLCMVCEMTISSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL--R-------------EQYAPLVKHL  407 (813)
T ss_pred             ccCCCCceeEEEEEEEECCCCCCcCCEEEEEEEEECceECHHHHHHHHcCCccc--c-------------hhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999874210  0             0245678999


Q ss_pred             HHHHHHHHHHHHhHhcCCCccccCCCceeeeCCCCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEeC
Q 002793          439 KSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRH  518 (880)
Q Consensus       439 ~~L~~la~~Lr~~R~~~Gal~l~~pe~~i~lDe~g~p~~i~~~~~~~a~~LIEEfMilAN~~vA~~l~~~~~~~~l~R~H  518 (880)
                      ..|+++|++|+++|+++|+|+|+.||++|.+|++|.+..+...++.+||.|||||||+||++||+|+.++ +.|++||+|
T Consensus       408 ~~l~~la~~Lr~~R~~~Gai~~d~~E~~i~ld~~g~~~~i~~~~~~~a~~lIEE~MllAN~~vA~~l~~~-~~p~lyR~H  486 (813)
T PRK11642        408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KEPALFRIH  486 (813)
T ss_pred             HHHHHHHHHHHHHHHHCCCcccCCCceEEEECCCCCEeeEEecccccHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875 889999999


Q ss_pred             CCCChHHHHHHHHHHHHcCCccCCC---ChhHHHHHHHHHHHhhcCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcc
Q 002793          519 PAPNMRKLREFEAFCSKHGLQLDTS---SSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWG  595 (880)
Q Consensus       519 ~~P~~~kl~~l~~~~~~~G~~l~~~---~~~~l~~~L~~i~~~~~~~~~~~~~l~~~~lR~m~~A~Y~~sg~~~s~~~~~  595 (880)
                      +.|+++++++|.+++..+|+.++..   ++..++..|..+.    +.|. ..+|..+++|+|++|.|       ++++.+
T Consensus       487 ~~P~~ekl~~l~~~l~~lG~~l~~~~~~~~~~~~~ll~~~~----~~~~-~~~l~~~llRsm~~A~Y-------~~~~~g  554 (813)
T PRK11642        487 DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA----DRPD-AEMLQTMLLRSMKQAIY-------DPENRG  554 (813)
T ss_pred             CCCCHHHHHHHHHHHHHcCCcccCCCCCCHHHHHHHHHHHh----CCcH-HHHHHHHHHHhcccccc-------CCCCCC
Confidence            9999999999999999999998643   2455666666654    3443 25677888999999999       568999


Q ss_pred             ccccCCCCeeeccCCCCChhhHHHHHHHHHHHHhchhhhhhhccCCCCCCcccccccccc-ccccccchhhhhhhhhHHH
Q 002793          596 HYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLT-GIFYDKDAAESLEGREALS  674 (880)
Q Consensus       596 HfgL~~~~YTHFTSPIRRY~DLiVHR~L~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~es~~~~~~~~  674 (880)
                      |||||++.||||||||||||||+|||+|+++|.++...                 ..|+. ..+|..             
T Consensus       555 HfGLa~~~YtHFTSPIRRY~DLivHR~Lk~~L~~~~~~-----------------~~~~~~~~~~~~-------------  604 (813)
T PRK11642        555 HFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGH-----------------KGNTTETGGYHY-------------  604 (813)
T ss_pred             ccccccccccccCchhhhhHHHHHHHHHHHHHhCCCCc-----------------cccccccccccc-------------
Confidence            99999999999999999999999999999999754210                 00111 011211             


Q ss_pred             HHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceEEeEEEEEeeccEEEEEEecCceEEEEEee
Q 002793          675 VAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYD  754 (880)
Q Consensus       675 ~~~~~~~~~~~~~l~~ia~~~N~r~~~A~~a~r~s~~l~~~~~l~~~~~~~~~a~V~~v~~~~~~V~Ip~~giE~~V~~~  754 (880)
                               ..+.+..+|+|||++++.|.+|+|++.++++++||+++.|.+++|+|++|.++||+|.|+++++||+||++
T Consensus       605 ---------~~~~l~~~~~~~s~~er~A~~aeR~~~~~~~~~~m~~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs  675 (813)
T PRK11642        605 ---------SMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS  675 (813)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEe
Confidence                     01346789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEecccceEEEeeecccceeecCCCceEEe
Q 002793          755 EVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRA  791 (880)
Q Consensus       755 ~l~~~~~e~~~~~~~lv~~~~~~k~~~~~g~~~~~r~  791 (880)
                      +|.++||+|++.+++|+|  +++++.|++||.|+++.
T Consensus       676 ~L~~d~y~~d~~~~~L~g--~~~~~~~~lGD~V~VkV  710 (813)
T PRK11642        676 SLDNDYYRFDQVGQRLIG--ESSGQTYRLGDRVEVRV  710 (813)
T ss_pred             ecCCcceEecchheEEec--ccCCcEECCCCEEEEEE
Confidence            999999999999999999  67889999999888774

>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>TIGR02063 RNase_R ribonuclease R Back     alignment and domain information
>PRK05054 exoribonuclease II; Provisional Back     alignment and domain information
>COG0557 VacB Exoribonuclease R [Transcription] Back     alignment and domain information
>TIGR02062 RNase_B exoribonuclease II Back     alignment and domain information
>KOG2102 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00773 RNB: RNB domain CAUTION: The Prosite pattern does not correspond to this Pfam Back     alignment and domain information
>COG4776 Rnb Exoribonuclease II [Transcription] Back     alignment and domain information
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain Back     alignment and domain information
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain Back     alignment and domain information
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies Back     alignment and domain information
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form Back     alignment and domain information
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain Back     alignment and domain information
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide Back     alignment and domain information
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] Back     alignment and domain information
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>PRK08582 hypothetical protein; Provisional Back     alignment and domain information
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional Back     alignment and domain information
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain Back     alignment and domain information
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies Back     alignment and domain information
>PRK07252 hypothetical protein; Provisional Back     alignment and domain information
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains Back     alignment and domain information
>PRK05807 hypothetical protein; Provisional Back     alignment and domain information
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain Back     alignment and domain information
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain Back     alignment and domain information
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease Back     alignment and domain information
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated Back     alignment and domain information
>PRK08059 general stress protein 13; Validated Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional Back     alignment and domain information
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>TIGR02063 RNase_R ribonuclease R Back     alignment and domain information
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PHA02945 interferon resistance protein; Provisional Back     alignment and domain information
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional Back     alignment and domain information
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain Back     alignment and domain information
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain Back     alignment and domain information
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits Back     alignment and domain information
>PRK07400 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain Back     alignment and domain information
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query880
2wp8_J977 Yeast Rrp44 Nuclease Length = 977 7e-66
4ifd_J1003 Crystal Structure Of An 11-subunit Eukaryotic Exoso 8e-66
2vnu_D760 Crystal Structure Of Sc Rrp44 Length = 760 2e-61
2ix0_A663 Rnase Ii Length = 663 3e-17
2ix1_A664 Rnase Ii D209n Mutant Length = 664 9e-17
2r7d_A469 Crystal Structure Of Ribonuclease Ii Family Protein 2e-12
2id0_A644 Escherichia Coli Rnase Ii Length = 644 2e-12
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (635), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 176/497 (35%), Positives = 259/497 (52%), Gaps = 50/497 (10%)
Query: 180 MVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQI 239
           ++++ K LP  ++ R       ++  +V + ID W     +P  H +   G     + + 
Sbjct: 400 VILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHFVRDLGTIESAQAET 457
Query: 240 NAILYENAICCSGFSPESLSCLPCV------------PWEVPQEELLS-RKDLRNFCIFT 286
            A+L E+ +    FS + L CLP              P  V ++ LL+ RKDLR+  I +
Sbjct: 458 EALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICS 517
Query: 287 IDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKI 346
           IDP    D++DAL  ++L +G   VGVHIADV++FV PGTALD E   R TSVY++ ++I
Sbjct: 518 IDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRI 577
Query: 347 PMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDII 406
            MLP+LL  ++ SL P VDR AFS+ W+L+ + ++V+    ++VIRS    SYE AQ  I
Sbjct: 578 DMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI 637
Query: 407 DGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK-P 465
           D K     ++ L  G                +++L ++S  LK KR   GAL L + +  
Sbjct: 638 DDK---TQNDELTMG----------------MRALLKLSVKLKQKRLEAGALNLASPEVK 678
Query: 466 VFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAP---N 522
           V +  E   P +  +      N L EEFMLLAN + A  I  AFP +A+LRRH AP   N
Sbjct: 679 VHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTN 738
Query: 523 MRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN-YATRPMQLAS 581
              L E     ++  + +   SS     SL++  +  +D Y  F+ L+   +TR M  A 
Sbjct: 739 FEILNEM--LNTRKNMSISLESSKALADSLDRCVDP-EDPY--FNTLVRIMSTRCMMAAQ 793
Query: 582 YFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR---- 637
           YF SG +    D+ HY LA  +YTHFTSP+RRY D+V HR L  A+  E L   HR    
Sbjct: 794 YFYSGAYS-YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNK 852
Query: 638 -RMLPKNNHREGVRGRF 653
             M+ +N +R+    +F
Sbjct: 853 MDMICRNINRKHRNAQF 869
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003 Back     alignment and structure
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44 Length = 760 Back     alignment and structure
>pdb|2IX0|A Chain A, Rnase Ii Length = 663 Back     alignment and structure
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant Length = 664 Back     alignment and structure
>pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From Deinococcus Radiodurans, Triclinic Crystal Form. Northeast Structural Genomics Target Drr63 Length = 469 Back     alignment and structure
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query880
2vnu_D760 Exosome complex exonuclease RRP44; hydrolase-RNA c 0.0
2wp8_J977 Exosome complex exonuclease DIS3; nucleus, hydrola 1e-176
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 1e-114
2r7d_A469 Ribonuclease II family protein; structural genomic 1e-101
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 Back     alignment and structure
 Score =  541 bits (1397), Expect = 0.0
 Identities = 190/745 (25%), Positives = 303/745 (40%), Gaps = 127/745 (17%)

Query: 58  SSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPT 117
           SS   + E  +      I       ++ +   ++   +     + + + +       +PT
Sbjct: 89  SSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPT 148

Query: 118 GRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKY 177
            +VV I  RS R+   VG L                  +         + + +       
Sbjct: 149 AKVVYIQRRSWRQ--YVGQL----------------APSSVDPQSSSTQNVFVILMDKCL 190

Query: 178 PKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEP 237
           PK+ +  +   + + KR            +   ID W     +P  H +   G     + 
Sbjct: 191 PKVRIRTRRAAELLDKR------------IVISIDSWPTTHKYPLGHFVRDLGTIESAQA 238

Query: 238 QINAILYENAICCSGFSPESLSCLPCV--PWEVPQ-----------EELLSRKDLRNFCI 284
           +  A+L E+ +    FS + L CLP     W+ P              L  RKDLR+  I
Sbjct: 239 ETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLI 298

Query: 285 FTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQR 344
            +IDP    D++DAL  ++L +G   VGVHIADV++FV PGTALD E   R TSVY++ +
Sbjct: 299 CSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDK 358

Query: 345 KIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQD 404
           +I MLP+LL  ++ SL P VDR AFS+ W+L+ + ++V+    ++VIRS    SYE AQ 
Sbjct: 359 RIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQL 418

Query: 405 IIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK 464
            ID K   +                   ++   +++L ++S  LK KR   GAL L + +
Sbjct: 419 RIDDKTQND-------------------ELTMGMRALLKLSVKLKQKRLEAGALNLASPE 459

Query: 465 PVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNM 523
                D E   P +  +      N L EEFMLLAN + A  I  AFP +A+LRRH AP  
Sbjct: 460 VKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPS 519

Query: 524 RKLREFEAFC-SKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASY 582
                      ++  + +   SS     SL++  +   +D     ++   +TR M  A Y
Sbjct: 520 TNFEILNEMLNTRKNMSISLESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQY 577

Query: 583 FCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPK 642
           F SG +    D+ HY LA  +YTHFTSP+RRY D+V HR L  A+  E L   H      
Sbjct: 578 FYSGAYSYP-DFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTH------ 630

Query: 643 NNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLAC 702
                            DK+                         +  +  + N +    
Sbjct: 631 ----------------RDKNK------------------------MDMICRNINRKHRNA 650

Query: 703 RNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIY---------- 752
           +    A ++ Y+  +++          V+ +    + + + K  +E  I           
Sbjct: 651 QFAGRASIEYYVGQVMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNS 709

Query: 753 --YDEVEG-LIVEWLETTSTLVLSL 774
             +DEVE  L      +     + +
Sbjct: 710 AAFDEVEYKLTFVPTNSDKPRDVYV 734
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 Back     alignment and structure
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 880
d2vnud4416 b.40.4.16 (D:495-910) Exosome complex exonuclease 2e-80
d2ix0a4385 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Esch 6e-70
d2r7da2401 b.40.4.16 (A:3-403) Ribonuclease II family protein 4e-46
d2vnud195 b.40.4.5 (D:400-494) Exosome complex exonuclease R 6e-10
d2vnud3148 b.40.4.5 (D:252-399) Exosome complex exonuclease R 0.002
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 416 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  263 bits (673), Expect = 2e-80
 Identities = 147/400 (36%), Positives = 207/400 (51%), Gaps = 37/400 (9%)

Query: 253 FSPESLSCLPCV--PWEVPQE-----------ELLSRKDLRNFCIFTIDPSTATDLDDAL 299
           FS + L CLP     W+ P +            L  RKDLR+  I +IDP    D++DAL
Sbjct: 1   FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDAL 60

Query: 300 SIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGS 359
             ++L +G   VGVHIADV++FV PGTALD E   R TSVY++ ++I MLP+LL  ++ S
Sbjct: 61  HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCS 120

Query: 360 LNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLG 419
           L P VDR AFS+ W+L+ + ++V+    ++VIRS    SYE AQ  I             
Sbjct: 121 LKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI------------- 167

Query: 420 EGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDS 478
                   + +  ++   +++L ++S  LK KR   GAL L + +     D E   P + 
Sbjct: 168 ------DDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEV 221

Query: 479 VLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHG- 537
            +      N L EEFMLLAN + A  I  AFP +A+LRRH AP            +    
Sbjct: 222 EIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKN 281

Query: 538 LQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHY 597
           + +   SS     SL++  +   +D     ++   +TR M  A YF SG +    D+ HY
Sbjct: 282 MSISLESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP-DFRHY 338

Query: 598 ALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR 637
            LA  +YTHFTSP+RRY D+V HR L  A+  E L   HR
Sbjct: 339 GLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHR 378
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 385 Back     information, alignment and structure
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Length = 401 Back     information, alignment and structure
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 95 Back     information, alignment and structure
>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query880
d2vnud4416 Exosome complex exonuclease RRP44 {Saccharomyces c 100.0
d2ix0a4385 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 100.0
d2r7da2401 Ribonuclease II family protein DR0020 {Deinococcus 100.0
d2vnud195 Exosome complex exonuclease RRP44 {Saccharomyces c 99.49
d2ix0a190 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 99.12
d2ix0a387 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 98.73
d2vnud288 Exosome complex exonuclease RRP44 {Saccharomyces c 98.71
d1go3e1106 C-terminal domain of RNA polymerase II subunit RBP 98.44
d2c35b194 C-terminal domain of RNA polymerase II subunit RBP 98.06
d1y14b191 C-terminal domain of RNA polymerase II subunit RBP 98.02
d2ix0a279 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 97.33
d1kl9a286 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 96.3
d2ahob284 Eukaryotic initiation factor 2alpha, eIF2alpha, N- 95.25
d3bzka494 Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] 93.56
d1sroa_76 S1 RNA-binding domain of polyribonucleotide phosph 92.55
d2je6i187 S1-domain of exosome complex RNA-binding protein 1 91.53
d2z0sa188 S1-domain of exosome complex RNA-binding protein 1 91.37
d2ba0a183 S1-domain of exosome complex RNA-binding protein 1 90.63
d1e3pa262 S1 RNA-binding domain of polyribonucleotide phosph 86.79
d2nn6h195 S1-domain of Ribosomal RNA-processing protein 4, R 85.54
d1wi5a_119 S1-domain of RRP5 protein homolog (PDCD11, KIAA018 84.89
d2vnud3148 Exosome complex exonuclease RRP44 {Saccharomyces c 80.69
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=0  Score=691.36  Aligned_cols=401  Identities=38%  Similarity=0.598  Sum_probs=352.7

Q ss_pred             CCHHHHCCCCCC--CCCCCH-----------HHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf             996665039999--999992-----------2210384478861999849999897755999990896379999973332
Q 002793          253 FSPESLSCLPCV--PWEVPQ-----------EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVS  319 (880)
Q Consensus       253 F~~~vl~~~~~~--~~~i~~-----------~~~~~R~DLr~~~vfTIDp~~akDlDDAisie~l~~G~~~igVHIADVS  319 (880)
                      ||++|++|+|..  +|.++.           .+.++|+|||++++|||||++|+|+||||||+++++|.|+|||||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva   80 (416)
T d2vnud4           1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT   80 (416)
T ss_dssp             CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred             CCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHH
T ss_conf             98789964432368643764453122115752323771177898799769999546565899995899599999983578


Q ss_pred             CCCCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCH
Q ss_conf             10158997569998375405639982169984222002478999943799999997689979999999999941552499
Q 002793          320 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSY  399 (880)
Q Consensus       320 ~~V~~gS~LD~eA~~RgtSvYLp~~viPMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~~~i~~SvIrS~~rLtY  399 (880)
                      +||++||+||++|++||+|+|||++++||||+.||+++|||.||++|+|+|+.+.++.+|++.+++|++|+|+|.++|||
T Consensus        81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY  160 (416)
T d2vnud4          81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY  160 (416)
T ss_dssp             HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred             HHHCCCCHHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEHHHHCCCCCCCH
T ss_conf             86299998999999848037589971144788886545205698202467765540210144420332012033322321


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC-CCCCEEEE
Q ss_conf             99998881699965667668998745688761459999999999999999967319971026998332107-99982787
Q 002793          400 EHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDS  478 (880)
Q Consensus       400 e~vq~il~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~la~~Lr~~R~~~Gal~l~~~e~~i~ld-e~g~p~~~  478 (880)
                      ++|+++|++...                   ..++...|..|+.+++.|+++|.++|++.++.++.++.+| +++.+..+
T Consensus       161 ~ev~~~l~~~~~-------------------~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~  221 (416)
T d2vnud4         161 EQAQLRIDDKTQ-------------------NDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEV  221 (416)
T ss_dssp             HHHHHHHHCTTC-------------------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEE
T ss_pred             HHHHHHHCCCCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             667887513543-------------------2100067899999999999999856875457874279942333556543


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             824787278999999999999999999975999306983799995789999999998-2984479990579999999998
Q 002793          479 VLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSK-HGLQLDTSSSGQFHQSLEQARE  557 (880)
Q Consensus       479 ~~~~~~~s~~LIEEfMilAN~~vA~~l~~~~~~~~llR~h~~P~~~kl~~l~~~~~~-~g~~l~~~~~~~l~~sL~~i~~  557 (880)
                      ....+.++|.|||||||+||.+||+++.++++.+++||+|+.|+.++++.+.+++.. .|+.++.++...+..+|.++.+
T Consensus       222 ~~~~~~~s~~lVeE~Mi~AN~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  301 (416)
T d2vnud4         222 EIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVD  301 (416)
T ss_dssp             EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCB
T ss_pred             CEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             11222420140787765430899999998478887640007999799999999999701267686522557899998747


Q ss_pred             HHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf             50388899999999880456781761458889898866422378871000578988245899999999997002244421
Q 002793          558 KLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR  637 (880)
Q Consensus       558 ~~~~~~~~~~~l~~~~lr~m~~A~Y~~~g~~~s~~~~~HfgL~~~~YTHFTSPIRRY~DLivHR~L~a~L~~e~~~~~~~  637 (880)
                      .  .++.....+....+|+|.+|.|+..+.+ +..+.+|||||++.|||||||||||+||+|||||+++|.+++..... 
T Consensus       302 ~--~~~~~~~~i~~~~~~~~~~a~~~~~~~~-s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~-  377 (416)
T d2vnud4         302 P--EDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTH-  377 (416)
T ss_dssp             T--TBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGG-
T ss_pred             C--CCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH-
T ss_conf             5--6726999999998877888776301557-99762737657220151686776378999999999997379999774-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             03987777665445422341145211345556667789766249982557999999988998999999999999999999
Q 002793          638 RMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWIL  717 (880)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~~~~~~~~~~~~l~~~~~l~~i~~~~N~r~~~Ar~A~r~s~~l~~~~~  717 (880)
                                                                   .+.+.+..+|.+||++++.|++|||++.++|+|+|
T Consensus       378 ---------------------------------------------~~~e~l~~i~~~~~~~e~~a~~aer~~~~~~~~~~  412 (416)
T d2vnud4         378 ---------------------------------------------RDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQV  412 (416)
T ss_dssp             ---------------------------------------------GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------------------------------------43999999999999999999999999999999999


Q ss_pred             HHHC
Q ss_conf             7613
Q 002793          718 LKKK  721 (880)
Q Consensus       718 lk~~  721 (880)
                      |+++
T Consensus       413 lk~~  416 (416)
T d2vnud4         413 MRNN  416 (416)
T ss_dssp             HHTC
T ss_pred             HHCC
T ss_conf             7578
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure